Commit 3cd757ad by MARIJON Pierre

If we remove all containment graph lost connectivity

parent 8cc7dbb1
......@@ -8,7 +8,7 @@ rule paf2gfa:
gfa="{filename}.gfa"
shell:
config['paf2gfa']['bin'] + " {input.paf} {output.gfa} --remove-all-containement --remove-all-internal"
config['paf2gfa']['bin'] + " {input.paf} {output.gfa} --remove-all-internal"
rule paf2gfa_containment:
input:
......
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