Commit dfef00bc authored by MARIJON Pierre's avatar MARIJON Pierre

correct typo

parent de06280c
......@@ -163,6 +163,7 @@ def finish(args):
def select(args):
for accession in args["input"]:
accession, ERS_accession = accession.split("\t")
# accession = accession.strip()
# dump_call = ["fastq-dump", "-O"]
......@@ -173,7 +174,7 @@ def select(args):
# # build data directory
# data_path.mkdir(parents=True, exist_ok=True)
run_id, assembly_len = get_info_about_ERS(accession)
run_id, assembly_len = get_info_about_ERS(ERS_accession)
# if run_id is None and assembly_len is None:
# logging.error("We didn't find assembly size for this species sorry we skip this !")
# continue
......
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