Commit de06280c authored by MARIJON Pierre's avatar MARIJON Pierre

correct typo

parent effc7180
......@@ -9,7 +9,7 @@ import statistics
from pathlib import Path
from bs4 import BeautifulSoup
canu_call_template = "canu -p canu -pacbio-raw {} -d {} genomeSize={} correctedErrorRate={} corOutCoverage={} corMinCoverage={} maxThreads=10"
canu_call_template = "canu -p canu -pacbio-raw {} -d {} genomeSize={} correctedErrorRate={} corOutCoverage={} corMinCoverage={} maxThreads=15"
canu_call_template_unitig = canu_call_template + " stopAfter=unitig"
minimap_call_template = "minimap -x ava10k -t 10 {} {}"
......@@ -173,7 +173,7 @@ def select(args):
# # build data directory
# data_path.mkdir(parents=True, exist_ok=True)
# run_id, assembly_len = get_info_about_ERS(accession)
run_id, assembly_len = get_info_about_ERS(accession)
# if run_id is None and assembly_len is None:
# logging.error("We didn't find assembly size for this species sorry we skip this !")
# continue
......
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