MOSAIC

Bvpy is a python library, based on FEniCS, Gmsh & Meshio, to easily implement and study numerically Boundary Value Problems and Initial Boundary Value Problems through the Finite Element Method.

Python library implementing data structures and algorithms for the representation and manipulation of cellular complexes.

Python library for the reconstruction of 3D meshes from segmented shoot apical meristem (SAM) tissue images : Dual Reconstruction by Adjacency Complex Optimization (DRACO) and SAM Tissue Enhanced Mesh (STEM)

A package for treating trees augmented with 3D geometry.

A set of tools to improve L-py functionalities

https://mosaic.gitlabpages.inria.fr/mosaic-commons

A Combinatorial Model of Phyllotaxis Perturbations in Arabidopsis thaliana.

TimageTK (Tissue Image Toolkit) is a Python package dedicated to image processing of multicellular architectures, such as plants or animals. It is intended for biologists, modellers and computer scientists.

The library offers an array of tools for image enhancement, transformation, and feature extraction. From mathematical morphology to filtering algorithms and peak detection, they refine image data and assist in critical processing workflows for various analysis needs.

https://mosaic.gitlabpages.inria.fr/timagetk

Tissue Image Toolkit - Geometry (timagetk_geometry) is a Python package providing computational geometry tools for 3D images of multi-cellular tissues.

Polarity Analysis through Robust Extraction and Density Estimation of Signals at cell-wall level

Python library for manipulating trees and DAG reduction of trees