From fa42fc5c985e9be45e7faa897aff4a299775b8a9 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?J=C3=A9r=C3=B4me=20David?=
<Jerome.David@univ-grenoble-alpes.fr>
Date: Tue, 16 Jul 2013 15:10:38 +0000
Subject: [PATCH] Added onlyLocalEntities option to ontologyfactory. This is
only implemented for Jena and OWL3API
---
.../exmo/ontowrap/OntologyFactory.java | 18 +++++++-
.../exmo/ontowrap/jena25/JENAOntology.java | 43 ++++++++++++++-----
.../ontowrap/jena25/JENAOntologyFactory.java | 10 +++--
.../owlapi10/OWLAPIOntologyFactory.java | 4 +-
.../ontowrap/owlapi30/OWLAPI3Ontology.java | 33 +++++++++++---
.../owlapi30/OWLAPI3OntologyFactory.java | 8 ++--
.../ontowrap/skosapi/SKOSOntologyFactory.java | 4 +-
.../skoslite/SKOSLiteOntologyFactory.java | 4 +-
.../exmo/ontowrap/util/EntityFilter.java | 1 +
9 files changed, 91 insertions(+), 34 deletions(-)
diff --git a/src/fr/inrialpes/exmo/ontowrap/OntologyFactory.java b/src/fr/inrialpes/exmo/ontowrap/OntologyFactory.java
index 8d8f5b71..f80d48df 100644
--- a/src/fr/inrialpes/exmo/ontowrap/OntologyFactory.java
+++ b/src/fr/inrialpes/exmo/ontowrap/OntologyFactory.java
@@ -144,13 +144,27 @@ public abstract class OntologyFactory {
* Encapsulate an ontology already in the environment
* These methods should rather be in a LoadableOntologyFactory
*/
- public abstract LoadedOntology newOntology( Object onto ) throws OntowrapException;
+ public abstract LoadedOntology newOntology( Object onto , boolean onlyLocalEntities ) throws OntowrapException;
+
+ public LoadedOntology newOntology( Object onto ) throws OntowrapException {
+ return newOntology(onto,false);
+ }
+
+
/**
* Load an ontology, cache enabled
* These methods should rather be in a LoadableOntologyFactory
*/
- public abstract LoadedOntology loadOntology( URI uri ) throws OntowrapException;
+ public LoadedOntology loadOntology( URI uri ) throws OntowrapException {
+ return loadOntology(uri,true);
+ }
+
+ /**
+ * Load an ontology, cache enabled
+ * These methods should rather be in a LoadableOntologyFactory
+ */
+ public abstract LoadedOntology loadOntology( URI uri , boolean onlyLocalEntities) throws OntowrapException;
/**
* Load an ontology, cache enabled if true, disabled otherwise
diff --git a/src/fr/inrialpes/exmo/ontowrap/jena25/JENAOntology.java b/src/fr/inrialpes/exmo/ontowrap/jena25/JENAOntology.java
index 1bb6bbcf..f7bec973 100644
--- a/src/fr/inrialpes/exmo/ontowrap/jena25/JENAOntology.java
+++ b/src/fr/inrialpes/exmo/ontowrap/jena25/JENAOntology.java
@@ -55,8 +55,15 @@ import fr.inrialpes.exmo.ontowrap.util.EntityFilter;
public class JENAOntology extends BasicOntology<OntModel> implements HeavyLoadedOntology<OntModel>{
+ private boolean onlyLocalEntities=true;
// JE: this is not very Java 1.5...
// This is because of the version of Jena we use apparently
+
+
+
+ public JENAOntology(boolean onlyLocalEntities) {
+ this.onlyLocalEntities=onlyLocalEntities;
+ }
public Object getEntity(URI u) throws OntowrapException {
return onto.getOntResource(u.toString());
@@ -205,13 +212,22 @@ public class JENAOntology extends BasicOntology<OntModel> implements HeavyLoaded
}
};
}*/
+
+ private <K> Set<K> getFilteredOrNot(Set<K> s) {
+ if (onlyLocalEntities)
+ return new EntityFilter<K>(s,this);
+ else
+ return s;
+ }
public Set<OntClass> getClasses() {
- return new EntityFilter<OntClass>(onto.listNamedClasses().toSet(),this);
+
+ return getFilteredOrNot(onto.listNamedClasses().toSet());
+
}
public Set<DatatypeProperty> getDataProperties() {
- return new EntityFilter<DatatypeProperty>(onto.listDatatypeProperties().toSet(),this);
+ return getFilteredOrNot(onto.listDatatypeProperties().toSet());
//return getEntitySet(onto.listDatatypeProperties());
}
@@ -222,22 +238,21 @@ public class JENAOntology extends BasicOntology<OntModel> implements HeavyLoaded
public Set<OntResource> getEntities() {
- return new EntityFilter<OntResource>((onto.listAllOntProperties().mapWith( mapProperty )
+ return getFilteredOrNot((onto.listAllOntProperties().mapWith( mapProperty )
.andThen(onto.listNamedClasses().mapWith( mapClass ))
- .andThen(onto.listIndividuals().mapWith( mapInd )).toSet()),
- this);
+ .andThen(onto.listIndividuals().mapWith( mapInd )).toSet()));
}
public Set<Individual> getIndividuals() {
- return new EntityFilter<Individual>(onto.listIndividuals().toSet(),this);
+ return getFilteredOrNot(onto.listIndividuals().toSet());
}
public Set<ObjectProperty> getObjectProperties() {
- return new EntityFilter<ObjectProperty>(onto.listObjectProperties().toSet(),this);
+ return getFilteredOrNot(onto.listObjectProperties().toSet());
}
public Set<OntProperty> getProperties() {
- return new EntityFilter<OntProperty>(onto.listAllOntProperties().toSet(),this);
+ return getFilteredOrNot(onto.listAllOntProperties().toSet());
/*return getEntitySet( onto.listAllOntProperties().filterDrop( new Filter () {
public boolean accept( Object o ) { return (o instanceof AnnotationProperty); }
}) );*/
@@ -308,7 +323,10 @@ public class JENAOntology extends BasicOntology<OntModel> implements HeavyLoaded
public Set<OntProperty> getDataProperties(Object c, int local, int asserted, int named) {
return new EntityFilter<OntProperty>( ((OntClass) c).listDeclaredProperties(asserted==OntologyFactory.DIRECT).toSet(),this) {
protected boolean isFiltered(OntProperty obj) {
- return super.isFiltered(obj) && !obj.isDatatypeProperty();
+ if (JENAOntology.this.onlyLocalEntities)
+ return super.isFiltered(obj) && !obj.isDatatypeProperty();
+ else
+ return !obj.isDatatypeProperty();
}
};
@@ -329,12 +347,15 @@ public class JENAOntology extends BasicOntology<OntModel> implements HeavyLoaded
public Set<OntProperty> getObjectProperties(Object c, int local, int asserted, int named) {
return new EntityFilter<OntProperty>( ((OntClass) c).listDeclaredProperties(asserted==OntologyFactory.DIRECT).toSet(),this) {
protected boolean isFiltered( OntProperty obj ) {
- return super.isFiltered(obj) && !obj.isObjectProperty();
+ if (JENAOntology.this.onlyLocalEntities)
+ return super.isFiltered(obj) && !obj.isObjectProperty();
+ else
+ return !obj.isObjectProperty();
}
};
}
public Set<OntProperty> getProperties(Object c, int local, int asserted, int named) {
- return new EntityFilter<OntProperty>( ((OntClass) c).listDeclaredProperties(asserted==OntologyFactory.DIRECT).toSet(),this);
+ return getFilteredOrNot(((OntClass) c).listDeclaredProperties(asserted==OntologyFactory.DIRECT).toSet());
}
public Set<? extends OntResource> getRange(Object p, int asserted) {
diff --git a/src/fr/inrialpes/exmo/ontowrap/jena25/JENAOntologyFactory.java b/src/fr/inrialpes/exmo/ontowrap/jena25/JENAOntologyFactory.java
index 4b6ca350..08e4286a 100644
--- a/src/fr/inrialpes/exmo/ontowrap/jena25/JENAOntologyFactory.java
+++ b/src/fr/inrialpes/exmo/ontowrap/jena25/JENAOntologyFactory.java
@@ -48,9 +48,9 @@ public class JENAOntologyFactory extends OntologyFactory {
} catch (URISyntaxException ex) { ex.printStackTrace(); } // should not happen
}
- public JENAOntology newOntology( Object ontology ) throws OntowrapException {
+ public JENAOntology newOntology( Object ontology , boolean onlyLocalEntities ) throws OntowrapException {
if ( ontology instanceof OntModel ) {
- JENAOntology onto = new JENAOntology();
+ JENAOntology onto = new JENAOntology(onlyLocalEntities);
onto.setFormalism( formalismId );
onto.setFormURI( formalismUri );
onto.setOntology( (OntModel)ontology );
@@ -70,12 +70,14 @@ public class JENAOntologyFactory extends OntologyFactory {
}
cache.recordOntology( onto.getURI(), onto );
return onto;
+
} else {
throw new OntowrapException( "Argument is not an OntModel: "+ontology );
}
+
}
- public JENAOntology loadOntology( URI uri ) throws OntowrapException {
+ public JENAOntology loadOntology( URI uri , boolean onlyLocalEntities) throws OntowrapException {
JENAOntology onto = null;
onto = cache.getOntologyFromURI( uri );
if ( onto != null ) return onto;
@@ -84,7 +86,7 @@ public class JENAOntologyFactory extends OntologyFactory {
try {
OntModel m = ModelFactory.createOntologyModel( OntModelSpec.OWL_MEM, null );
m.read(uri.toString());
- onto = new JENAOntology();
+ onto = new JENAOntology(onlyLocalEntities);
onto.setFile(uri);
// to be checked : why several ontologies in a model ???
// If no URI can be extracted from ontology, then we use the physical URI
diff --git a/src/fr/inrialpes/exmo/ontowrap/owlapi10/OWLAPIOntologyFactory.java b/src/fr/inrialpes/exmo/ontowrap/owlapi10/OWLAPIOntologyFactory.java
index fc7ee6ea..3039bd37 100644
--- a/src/fr/inrialpes/exmo/ontowrap/owlapi10/OWLAPIOntologyFactory.java
+++ b/src/fr/inrialpes/exmo/ontowrap/owlapi10/OWLAPIOntologyFactory.java
@@ -56,7 +56,7 @@ public class OWLAPIOntologyFactory extends OntologyFactory {
cache.clear();
}
- public OWLAPIOntology newOntology( Object ontology ) throws OntowrapException {
+ public OWLAPIOntology newOntology( Object ontology, boolean onlyLocalEntities ) throws OntowrapException {
if ( ontology instanceof OWLOntology ) {
OWLAPIOntology onto = new OWLAPIOntology();
onto.setFormalism( formalismId );
@@ -76,7 +76,7 @@ public class OWLAPIOntologyFactory extends OntologyFactory {
}
}
- public OWLAPIOntology loadOntology( URI uri ) throws OntowrapException {
+ public OWLAPIOntology loadOntology( URI uri, boolean onlyLocalEntities) throws OntowrapException {
OWLAPIOntology onto = null;
onto = cache.getOntologyFromURI( uri );
if ( onto != null ) return onto;
diff --git a/src/fr/inrialpes/exmo/ontowrap/owlapi30/OWLAPI3Ontology.java b/src/fr/inrialpes/exmo/ontowrap/owlapi30/OWLAPI3Ontology.java
index fd3041d8..99377df6 100644
--- a/src/fr/inrialpes/exmo/ontowrap/owlapi30/OWLAPI3Ontology.java
+++ b/src/fr/inrialpes/exmo/ontowrap/owlapi30/OWLAPI3Ontology.java
@@ -62,25 +62,40 @@ import fr.inrialpes.exmo.ontowrap.util.EntityFilter;
public class OWLAPI3Ontology extends BasicOntology<OWLOntology> implements HeavyLoadedOntology<OWLOntology> {
- public OWLAPI3Ontology() {
+ private boolean onlyLocalEntities=true;
+ public OWLAPI3Ontology(boolean onlyLocalEntities) {
+ this.onlyLocalEntities=onlyLocalEntities;
}
+ private <K> Set<K> getFilteredOrNot(Set<K> s) {
+ if (onlyLocalEntities)
+ return new EntityFilter<K>(s,this);
+ else
+ return s;
+ }
+
public Set<? extends Object> getClasses() {
//return onto.getReferencedClasses();
//return onto.getClassesInSignature();
- return new EntityFilter<OWLClass>(onto.getClassesInSignature(),this);
+ return getFilteredOrNot(onto.getClassesInSignature());
}
public Set<? extends Object> getDataProperties() {
- return new EntityFilter<OWLDataProperty>(onto.getDataPropertiesInSignature(),this);
+ return getFilteredOrNot(onto.getDataPropertiesInSignature());
//return onto.getDataPropertiesInSignature();
}
+
+
+
public Set<? extends Object> getEntities() {
//return onto.getSignature();
return new EntityFilter<OWLEntity>(onto.getSignature(),this) {
protected final boolean isFiltered(OWLEntity obj) {
- return super.isFiltered(obj) || obj instanceof OWLAnnotationProperty || obj instanceof OWLDatatype;
+ if (onlyLocalEntities)
+ return super.isFiltered(obj) || obj instanceof OWLAnnotationProperty || obj instanceof OWLDatatype;
+ else
+ return obj instanceof OWLAnnotationProperty || obj instanceof OWLDatatype;
}
};
}
@@ -219,19 +234,23 @@ public class OWLAPI3Ontology extends BasicOntology<OWLOntology> implements Heavy
public Set<? extends Object> getIndividuals() {
//return onto.getIndividualsInSignature();
- return new EntityFilter<OWLNamedIndividual>(onto.getIndividualsInSignature(),this);
+ return getFilteredOrNot(onto.getIndividualsInSignature());
}
public Set<? extends Object> getObjectProperties() {
//System.err.println ( "ONTO: "+onto );
//return onto.getObjectPropertiesInSignature();
- return new EntityFilter<OWLObjectProperty>(onto.getObjectPropertiesInSignature(),this);
+ return getFilteredOrNot(onto.getObjectPropertiesInSignature());
}
public Set<? extends Object> getProperties() {
return new EntityFilter<OWLEntity>(onto.getSignature(),this) {
protected final boolean isFiltered(OWLEntity obj) {
- return super.isFiltered(obj) || !(obj instanceof OWLObjectProperty || obj instanceof OWLDataProperty);
+ if (onlyLocalEntities)
+ return super.isFiltered(obj) || !(obj instanceof OWLObjectProperty || obj instanceof OWLDataProperty);
+ else {
+ return !(obj instanceof OWLObjectProperty || obj instanceof OWLDataProperty);
+ }
}
};
diff --git a/src/fr/inrialpes/exmo/ontowrap/owlapi30/OWLAPI3OntologyFactory.java b/src/fr/inrialpes/exmo/ontowrap/owlapi30/OWLAPI3OntologyFactory.java
index 81382dc9..788996dc 100644
--- a/src/fr/inrialpes/exmo/ontowrap/owlapi30/OWLAPI3OntologyFactory.java
+++ b/src/fr/inrialpes/exmo/ontowrap/owlapi30/OWLAPI3OntologyFactory.java
@@ -58,9 +58,9 @@ public class OWLAPI3OntologyFactory extends OntologyFactory {
}
@Override
- public OWLAPI3Ontology newOntology( Object ontology ) throws OntowrapException {
+ public OWLAPI3Ontology newOntology( Object ontology , boolean onlyLocalEntities) throws OntowrapException {
if ( ontology instanceof OWLOntology ) {
- OWLAPI3Ontology onto = new OWLAPI3Ontology();
+ OWLAPI3Ontology onto = new OWLAPI3Ontology(onlyLocalEntities);
onto.setFormalism( formalismId );
onto.setFormURI( formalismUri );
onto.setOntology( (OWLOntology)ontology );
@@ -74,7 +74,7 @@ public class OWLAPI3OntologyFactory extends OntologyFactory {
}
@Override
- public HeavyLoadedOntology loadOntology( URI uri ) throws OntowrapException {
+ public HeavyLoadedOntology loadOntology( URI uri , boolean onlyLocalEntities) throws OntowrapException {
OWLAPI3Ontology onto = null;
//System.err.println( " Loading ontology "+uri );
// Cache seems to be implemented in API 3.0 anyway
@@ -108,7 +108,7 @@ public class OWLAPI3OntologyFactory extends OntologyFactory {
oocex.printStackTrace();
throw new OntowrapException("Cannot load " + uri, oocex );
}
- onto = new OWLAPI3Ontology();
+ onto = new OWLAPI3Ontology(onlyLocalEntities);
onto.setFormalism( formalismId );
onto.setFormURI( formalismUri );
onto.setOntology( ontology );
diff --git a/src/fr/inrialpes/exmo/ontowrap/skosapi/SKOSOntologyFactory.java b/src/fr/inrialpes/exmo/ontowrap/skosapi/SKOSOntologyFactory.java
index 4d59f7e8..fa9fdf95 100644
--- a/src/fr/inrialpes/exmo/ontowrap/skosapi/SKOSOntologyFactory.java
+++ b/src/fr/inrialpes/exmo/ontowrap/skosapi/SKOSOntologyFactory.java
@@ -57,7 +57,7 @@ public class SKOSOntologyFactory extends OntologyFactory {
}
@Override
- public SKOSThesaurus newOntology( Object ontology ) throws OntowrapException {
+ public SKOSThesaurus newOntology( Object ontology , boolean onlyLocalEntities) throws OntowrapException {
if ( ontology instanceof SKOSDataset ) {
SKOSThesaurus onto = null;
onto = new SKOSThesaurus();
@@ -76,7 +76,7 @@ public class SKOSOntologyFactory extends OntologyFactory {
}
@Override
- public SKOSThesaurus loadOntology( URI uri ) throws OntowrapException {
+ public SKOSThesaurus loadOntology( URI uri , boolean onlyLocalEntities) throws OntowrapException {
//System.err.println(" Loading "+uri );
SKOSThesaurus onto = null;
onto = cache.getOntologyFromURI( uri );
diff --git a/src/fr/inrialpes/exmo/ontowrap/skoslite/SKOSLiteOntologyFactory.java b/src/fr/inrialpes/exmo/ontowrap/skoslite/SKOSLiteOntologyFactory.java
index 1c9ab621..aefc3594 100644
--- a/src/fr/inrialpes/exmo/ontowrap/skoslite/SKOSLiteOntologyFactory.java
+++ b/src/fr/inrialpes/exmo/ontowrap/skoslite/SKOSLiteOntologyFactory.java
@@ -50,7 +50,7 @@ public class SKOSLiteOntologyFactory extends OntologyFactory {
}
@Override
- public SKOSLiteThesaurus loadOntology(URI uri) throws OntowrapException {
+ public SKOSLiteThesaurus loadOntology(URI uri, boolean onlyLocalEntities) throws OntowrapException {
SKOSLiteThesaurus onto = cache.getOntologyFromURI( uri );
if ( onto != null ) return onto;
onto = cache.getOntology( uri );
@@ -66,7 +66,7 @@ public class SKOSLiteOntologyFactory extends OntologyFactory {
}
@Override
- public SKOSLiteThesaurus newOntology(Object m) throws OntowrapException {
+ public SKOSLiteThesaurus newOntology(Object m, boolean onlyLocalEntities) throws OntowrapException {
if ( m instanceof Model ) {
SKOSLiteThesaurus onto = new SKOSLiteThesaurus((Model) m);
onto.setFormalism( formalismId );
diff --git a/src/fr/inrialpes/exmo/ontowrap/util/EntityFilter.java b/src/fr/inrialpes/exmo/ontowrap/util/EntityFilter.java
index c9895e3f..d99f8982 100644
--- a/src/fr/inrialpes/exmo/ontowrap/util/EntityFilter.java
+++ b/src/fr/inrialpes/exmo/ontowrap/util/EntityFilter.java
@@ -29,6 +29,7 @@ import fr.inrialpes.exmo.ontowrap.OntowrapException;
public class EntityFilter<T> extends FilteredSet<T> {
private String ontoURI=null;
private LoadedOntology<?> onto=null;
+
public EntityFilter(Set<T> s, LoadedOntology<?> onto) {
super(s);
ontoURI = onto.getURI().toString().replaceFirst("#.*", "");
--
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