From fa40d4ed6ff218ed38d9087d63bdfc4099495d8e Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?J=C3=A9r=C3=B4me=20Euzenat?= <Jerome.Euzenat@inria.fr>
Date: Tue, 25 Mar 2008 21:09:31 +0000
Subject: [PATCH] - updated to version 3.2 (new manual, wordnet 3.0, new
 output)

---
 html/align.html   | 62 +++++++++++++++++++++++++++++------------------
 html/alignwn.html |  2 +-
 html/index.html   |  3 +--
 3 files changed, 40 insertions(+), 27 deletions(-)

diff --git a/html/align.html b/html/align.html
index 1ba82ff2..3a43631c 100644
--- a/html/align.html
+++ b/html/align.html
@@ -32,15 +32,21 @@ library, required libraries.</p>
 <p>Running the program is achieved through:
 <div class="fragment"><pre>
 $ java -jar lib/procalign.jar
+Two URIs required
 usage: Procalign [options] URI1 URI2
 options are:
-        --impl=className -i classname           Use the given alignment implementation.
-        --renderer=className -r className       Specifies the alignment renderer
-        --output=filename -o filename   Output the alignment in filename
-        --alignment=filename -a filename Start from an XML alignment file
-        --threshold=double -t double    Filters the similarities under threshold
-        --debug[=n] -d [n]              Report debug info at level n
-        --help -h                       Print this message
+	--impl=className -i classname		Use the given alignment implementation.
+	--renderer=className -r className	Specifies the alignment renderer
+	--output=filename -o filename	Output the alignment in filename
+	--params=filename -p filename	Reads parameters from filename
+	--alignment=filename -a filename Start from an XML alignment file
+	--threshold=double -t double	Filters the similarities under threshold
+	--cutmethod=hard|perc|prop|best|span -T hard|perc|prop|best|span	method for computing the threshold
+	--debug[=n] -d [n]		Report debug info at level n
+	-Dparam=value			Set parameter
+	--help -h			Print this message
+
+Alignment API implementation 3.2 ($Id$)
 </pre></div>
 Congratutalations, you are done. We
 advise you to learn more by using the <a href="tutorial">tutorial</a>
@@ -217,32 +223,40 @@ documentation. If you are familiar with CVS, the move is straightforward.)
   distance on class names. It thus have to build a matrix of distance
   and to choose the alignment from the distance. It can be called by:
 <div class="fragment"><pre>
-$ java -jar lib/procalign.jar file://$CWD/rdf/onto1.owl file://$CWD/rdf/onto2.owl -i fr.inrialpes.exmo.align.impl.method.EditDistNameAlignment
-</pre></div>
-which returns:
-<div class="code"><pre>
+$ java -jar lib/procalign.jar file://$CWD/examples/rdf/onto1.owl file://$CWD/examples/rdf/onto2.owl -i fr.inrialpes.exmo.align.impl.method.StringDistAlignment
 &lt;?xml version='1.0' encoding='utf-8' standalone='no'?>
-&lt;!DOCTYPE rdf:RDF SYSTEM "align.dtd">
-
-&lt;rdf:RDF xmlns='http://knowledgeweb.semanticweb.org/heterogeneity/alignment'>
+&lt;rdf:RDF xmlns='http://knowledgeweb.semanticweb.org/heterogeneity/alignment#'
+         xmlns:rdf='http://www.w3.org/1999/02/22-rdf-syntax-ns#'
+         xmlns:xsd='http://www.w3.org/2001/XMLSchema#'
+         xmlns:align='http://knowledgeweb.semanticweb.org/heterogeneity/alignment#'>
 &lt;Alignment>
   &lt;xml>yes&lt;/xml>
   &lt;level>0&lt;/level>
-  &lt;type>11&lt;/type>
-  &lt;onto1>file://$CWD/rdf/onto1.owl&lt;/onto1>
-  &lt;onto2>file://$CWD/rdf/onto2.owl&lt;/onto2>
+  &lt;type>**&lt;/type>
+  &lt;method>fr.inrialpes.exmo.align.impl.method.StringDistAlignment&lt;/method>
+  &lt;time>4&lt;/time>
+  &lt;onto1>
+    &lt;Ontology rdf:about="http://www.example.org/ontology1">
+      &lt;location>file:///Java/alignapi/examples/rdf/onto1.owl&lt;/location>
+      &lt;formalism>
+        &lt;Formalism align:name="OWL1.0" align:uri="http://www.w3.org/2002/07/owl#"/>
+      &lt;/formalism>
+    &lt;/Ontology>
+  &lt;/onto1>
+  &lt;onto2>
+    &lt;Ontology rdf:about="http://www.example.org/ontology2">
+      &lt;location>file:///Java/alignapi/examples/rdf/onto2.owl&lt;/location>
+      &lt;formalism>
+        &lt;Formalism align:name="OWL1.0" align:uri="http://www.w3.org/2002/07/owl#"/>
+      &lt;/formalism>
+    &lt;/Ontology>
+  &lt;/onto2>
   &lt;map>
-    &lt;Cell>
-      &lt;entity1 rdf:resource='http://www.example.org/ontology1#reviewedarticle'/>
-      &lt;entity2 rdf:resource='http://www.example.org/ontology2#article'/>
-      &lt;measure rdf:datatype='xsd:float'>0.5333333333333333&lt;/measure>
-      &lt;relation>=&lt;/relation>
-    &lt;/Cell>
     &lt;Cell>
       &lt;entity1 rdf:resource='http://www.example.org/ontology1#journalarticle'/>
       &lt;entity2 rdf:resource='http://www.example.org/ontology2#journalarticle'/>
-      &lt;measure rdf:datatype='xsd:float'>0.0&lt;/measure>
       &lt;relation>=&lt;/relation>
+      &lt;measure rdf:datatype='http://www.w3.org/2001/XMLSchema#float'>1.0&lt;/measure>
     &lt;/Cell>
   &lt;/map>
 &lt;/Alignment>
diff --git a/html/alignwn.html b/html/alignwn.html
index 82fe4d23..52e43076 100644
--- a/html/alignwn.html
+++ b/html/alignwn.html
@@ -20,7 +20,7 @@ using OLA.</p>
 <dd>as well as the OWL API are necessary. Its lib directory
 contains the alignwn.jar file.</dd>
 <dt><a href="">Wordnet</a></dt>
-<dd>version 2.0 is used.</dd>
+<dd>version 2.0 is used; it seems to work flawlessly with 3.0.</dd>
 <dt>The <a href="">Java WordNet Library (JWNL)</a></dt>
 <dd>whose jar-file should be put in the same directory as alignwn.jar.</dd>
 <dt>Apache <a href="">common-loggings</a></dt>
diff --git a/html/index.html b/html/index.html
index afa383f4..45492f17 100644
--- a/html/index.html
+++ b/html/index.html
@@ -64,8 +64,7 @@
 <dt><a href="tutorial/">Tutorial</a></dt>
 <dd>Walk through the Alignment API features</dd>
 <dt><a href="http://gforge.inria.fr/docman/view.php/117/251/align.pdf">Documentation</a></dt>
-<dd>Supposed to be a reference manual, but outdated. It could be
-  useful anyway.</dd>
+<dd>Supposed to be a reference manual, but not fully complete.</dd>
 </dl>
 </p>
 
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