diff --git a/lib/align.jar b/lib/align.jar
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diff --git a/lib/alignsvc.jar b/lib/alignsvc.jar
index c07fce3e19b2cac68b95686947e8a15f0dfb9ff4..287bc05b9bd7f6dba2f25e754cdcc784cbf30c4a 100644
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diff --git a/lib/alignwn.jar b/lib/alignwn.jar
index 9d1037ed228c0ac359e94c2f69a03917ed4afd2e..e82d718a692e88cd82f2bf59a556b8fdc01d94de 100644
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diff --git a/lib/getopt.jar b/lib/getopt/getopt.jar
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diff --git a/lib/jade.jar b/lib/jade/jade.jar
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diff --git a/lib/mysql-connector-java-5.0.3-bin.jar b/lib/jdbc/mysql-connector-java-5.0.3-bin.jar
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diff --git a/lib/postgresql-8.3-603.jdbc3.jar b/lib/jdbc/postgresql-8.3-603.jdbc3.jar
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diff --git a/lib/jena.jar b/lib/jena/jena.jar
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diff --git a/lib/jetty-util.jar b/lib/jetty/jetty-util.jar
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diff --git a/lib/commons-logging.jar b/lib/log4j/commons-logging.jar
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diff --git a/lib/mappingapilite.jar b/lib/mappingapi/mappingapilite.jar
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diff --git a/lib/api.jar b/lib/owlapi1/api.jar
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diff --git a/lib/oyster2.jar b/lib/oyster/oyster2.jar
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diff --git a/lib/procalign.jar b/lib/procalign.jar
index 11ac41333a40af595078c9df7bdccc2fe3f75758..6767b86b419560f136d319e048ebea591e04b9b1 100644
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diff --git a/lib/servlet-api.jar b/lib/servlet/servlet-api.jar
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diff --git a/lib/xercesImpl.jar b/lib/xerces/xercesImpl.jar
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rename to lib/xerces/xercesImpl.jar