diff --git a/plugins/neon/src/fr/inrialpes/exmo/align/plugin/neontk/OfflineAlign.java b/plugins/neon/src/fr/inrialpes/exmo/align/plugin/neontk/OfflineAlign.java
index c1f26ea68ad48a3cf89a087d9a9379f67ce3ad69..e918fbd6e4dee2776dd035c7345d0b157dfe344a 100755
--- a/plugins/neon/src/fr/inrialpes/exmo/align/plugin/neontk/OfflineAlign.java
+++ b/plugins/neon/src/fr/inrialpes/exmo/align/plugin/neontk/OfflineAlign.java
@@ -78,10 +78,7 @@ public class OfflineAlign {
System.out.println("Filename 1="+ selectedNeOnOnto1);
System.out.println("Filename 2="+ selectedNeOnOnto2);
-
-
-
Parameters p = new BasicParameters();
AlignmentProcess A1 = null;
//String htmlString = null;
@@ -125,42 +122,6 @@ public class OfflineAlign {
owlF.flush();
owlF.close();
- String str1 = fileToString(new File(ontoFolder.getAbsolutePath() + File.separator + name.toString()+ ".owl") );
-
- //Add URI to OWL file : rethink !!!
- File f0 = new File( ontoFolder.getAbsolutePath() + File.separator + name.toString()+ ".owl" );
- String s1 = str1.substring(0, str1.indexOf('>') + 1 );
- String s2 = str1.substring(str1.indexOf('>') + 2, str1.length());
-
- String[] ss2 = s1.split("xmlns");
- String s3 = "<?xml version=\"1.0\"?>\n" + ss2[0] + " ";
-
- s3 = s3 + "xmlns=\"" + "file:" + f0.getAbsolutePath() + "#\"\n ";
- s3 = s3 + "xml:base=\"" + "file:" + f0.getAbsolutePath() + "\"\n ";
- s3 = s3 + "xmlns:owl=\"http://www.w3.org/2002/07/owl#\"\n " + "xmlns";
-
- for(int i=2; i<ss2.length;i++) {
- s3 = s3 + ss2[i];
- if(i != ss2.length-1 ) s3 = s3 + "xmlns";
- }
-
-
- File owlFile = new File( ontoFolder.getAbsolutePath() + File.separator + name.toString()+ ".owl" );
- FileWriter out = new FileWriter( owlFile );
- out.write( s3 + s2 );
- out.flush();
- out.close();
-
- //for displaying
- /*
- FileWriter htmlF = new FileWriter( alignFolder.getAbsolutePath() + File.separator + name.toString() + ".html" );
- AlignmentVisitor V1 = new HTMLRendererVisitor(
- new PrintWriter ( htmlF ) );
-
- A1.render(V1);
- htmlF.flush();
- htmlF.close();
- */
} catch ( Exception ex ) { ex.printStackTrace(); };
@@ -175,23 +136,30 @@ public class OfflineAlign {
Integer name = new Integer(SWTInterface.getNewAlignId());
Alignment A1 = SWTInterface.alignmentTable.get( id );
- Alignment clonedA1 = (BasicAlignment)((BasicAlignment)A1).clone();
+ //BasicAlignment clonedA1 = (BasicAlignment)((BasicAlignment)A1).clone();
+ BasicAlignment clonedA1 = null;
try {
-
- clonedA1.cut(thres);
- SWTInterface.alignmentTable.put( alignFolder.getAbsolutePath() + File.separator + name.toString(), clonedA1 );
-
+
+ File exFile = new File(id + ".rdf");
+
+ AlignmentParser ap = new AlignmentParser(1);
+ clonedA1 = (BasicAlignment) ap.parse(exFile.toURI().toString());
+
File fnRdf = new File( alignFolder.getAbsolutePath() + File.separator + name.toString()+ ".rdf" );
if (fnRdf.exists()) fnRdf.delete();
- FileWriter rdfF = new FileWriter(fnRdf);
+ FileWriter rdfF = new FileWriter( fnRdf );
AlignmentVisitor rdfV = new RDFRendererVisitor( new PrintWriter ( rdfF ) );
clonedA1.render(rdfV);
rdfF.flush();
rdfF.close();
+ clonedA1.cut(thres);
+ SWTInterface.alignmentTable.put( alignFolder.getAbsolutePath() + File.separator + name.toString(), clonedA1 );
+
+
File owlFile = new File( ontoFolder.getAbsolutePath() + File.separator + name.toString()+ ".owl");
if (owlFile.exists()) owlFile.delete();
@@ -204,49 +172,7 @@ public class OfflineAlign {
clonedA1.render(owlV);
owlF.flush();
owlF.close();
-
-
- String str1 = fileToString(new File( ontoFolder.getAbsolutePath() + File.separator + name.toString()+ ".owl") );
-
-
- //Add URI to OWL file : rethink !!!
- File f0 = new File( ontoFolder.getAbsolutePath() + File.separator + name.toString()+ ".owl" );
- String s1 = str1.substring(0, str1.indexOf('>') + 1 );
- String s2 = str1.substring(str1.indexOf('>') + 2, str1.length());
-
- String[] ss2 = s1.split("xmlns");
- String s3 = "<?xml version=\"1.0\"?>\n" + ss2[0] + " ";
-
- s3 = s3 + "xmlns=\"" + "file:" + f0.getAbsolutePath() + "#\"\n ";
- s3 = s3 + "xml:base=\"" + "file:" + f0.getAbsolutePath() + "\"\n ";
- s3 = s3 + "xmlns:owl=\"http://www.w3.org/2002/07/owl#\"\n " + "xmlns";
-
- for(int i=2; i<ss2.length;i++) {
- s3 = s3 + ss2[i];
- if(i != ss2.length-1 ) s3 = s3 + "xmlns";
- }
-
-
- File owlFile2 = new File( ontoFolder.getAbsolutePath() + File.separator + name.toString()+ ".owl" );
- if (owlFile2.exists()) owlFile2.delete();
- FileWriter out = new FileWriter( owlFile2 );
- out.write( s3 + s2 );
- out.flush();
- out.close();
-
- //for displaying
- /*
- File htmlFile = new File( ontoFolder.getAbsolutePath()+ File.separator + name.toString()+ ".html" );
- if (htmlFile.exists()) htmlFile.delete();
- FileWriter htmlF = new FileWriter( htmlFile );
-
- AlignmentVisitor V1 = new HTMLRendererVisitor(
- new PrintWriter ( htmlF ) );
-
- clonedA1.render(V1);
- htmlF.flush();
- htmlF.close();
- */
+
}
catch ( Exception ex ) { ex.printStackTrace();};
diff --git a/plugins/neon/src/fr/inrialpes/exmo/align/plugin/neontk/OnlineAlign.java b/plugins/neon/src/fr/inrialpes/exmo/align/plugin/neontk/OnlineAlign.java
index afe284fc4db088c646d1792ee194984cfcdab370..99fb4d12452cdb88936173ebc0a1c94418fe0bb4 100755
--- a/plugins/neon/src/fr/inrialpes/exmo/align/plugin/neontk/OnlineAlign.java
+++ b/plugins/neon/src/fr/inrialpes/exmo/align/plugin/neontk/OnlineAlign.java
@@ -29,8 +29,10 @@ import java.io.FileInputStream;
import java.io.DataOutputStream;
import java.io.IOException;
import java.io.InputStreamReader;
+import java.io.ByteArrayInputStream;
import java.io.OutputStream;
+import java.io.ByteArrayOutputStream;
import java.net.HttpURLConnection;
import java.net.URL;
@@ -41,6 +43,23 @@ import java.util.zip.ZipInputStream;
import javax.swing.JOptionPane;
import org.semanticweb.owl.align.Parameters;
+import org.w3c.dom.Document;
+import org.w3c.dom.Node;
+import org.w3c.dom.NodeList;
+import org.xml.sax.SAXException;
+
+import javax.xml.parsers.DocumentBuilder;
+import javax.xml.parsers.DocumentBuilderFactory;
+import javax.xml.parsers.ParserConfigurationException;
+import javax.xml.xpath.XPath;
+import javax.xml.xpath.XPathConstants;
+import javax.xml.xpath.XPathExpressionException;
+import javax.xml.xpath.XPathFactory;
+import javax.xml.transform.TransformerFactory;
+import javax.xml.transform.Transformer;
+import javax.xml.transform.OutputKeys;
+import javax.xml.transform.dom.DOMSource;
+import javax.xml.transform.stream.StreamResult;
import fr.inrialpes.exmo.align.impl.BasicParameters;
@@ -54,7 +73,8 @@ public class OnlineAlign {
URL SOAPUrl = null;
String SOAPAction = null;
String uploadFile = null;
-
+ private static DocumentBuilder BUILDER = null;
+ final DocumentBuilderFactory fac = DocumentBuilderFactory.newInstance();
public OnlineAlign( String htmlPort, String host) {
try {
@@ -65,6 +85,10 @@ public class OnlineAlign {
} catch ( Exception ex ) { ex.printStackTrace(); };
+ fac.setValidating(false);
+ fac.setNamespaceAware(false);
+ try { BUILDER = fac.newDocumentBuilder(); }
+ catch (ParserConfigurationException e) { };
}
public String uploadAlign(String alignId) {
@@ -85,17 +109,32 @@ public class OnlineAlign {
String message = createMessage( params );
System.out.println("HOST= "+ HOST + ", PORT= " + PORT + ", Action = "+ SOAPAction);
- System.out.println("Message :"+ message);
+ System.out.println("Message for load file :"+ message);
// Send message
//answer = sendMessage( message, params );
answer = sendFile( message, params );
-
- System.out.println("Loaded Align="+ answer);
+ System.out.println("SOAP loaded align=" + answer );
} catch ( Exception ex ) { ex.printStackTrace(); };
- if(! connected ) return null;
- return answer;
+ if(! connected ) return null;
+
+ Document domMessage = null;
+ try {
+ domMessage = BUILDER.parse( new ByteArrayInputStream( answer.getBytes()) );
+
+ } catch ( IOException ioex ) {
+ ioex.printStackTrace();
+ } catch ( SAXException saxex ) {
+ saxex.printStackTrace();
+ }
+
+
+ String[] result = getTagFromSOAP( domMessage, "loadResponse" );
+ System.out.println("Loaded Align="+ result[0]);
+
+ return result[0];
+
}
public String trimAlign(String alignId, String thres) {
@@ -121,15 +160,32 @@ public class OnlineAlign {
// Send message
answer = sendMessage( message, params );
- System.out.println("Trim Align="+ answer);
+
}
catch ( Exception ex ) { ex.printStackTrace(); };
if(! connected ) return null;
- return answer;
+
+ Document domMessage = null;
+ try {
+ domMessage = BUILDER.parse( new ByteArrayInputStream( answer.getBytes()) );
+
+ } catch ( IOException ioex ) {
+ ioex.printStackTrace();
+ } catch ( SAXException saxex ) {
+ saxex.printStackTrace();
+ }
+
+ String[] result = getTagFromSOAP( domMessage, "cutResponse" );
+
+ System.out.println("Trim Align="+ result[0]);
+
+ return result[0];
+
+
}
- public String getMethods() {
+ public String[] getMethods() {
String answer = null;
@@ -154,13 +210,25 @@ public class OnlineAlign {
}
catch ( Exception ex ) { ex.printStackTrace(); };
if(! connected ) return null;
- return answer;
-
-
+ Document domMessage = null;
+ try {
+ domMessage = BUILDER.parse( new ByteArrayInputStream( answer.getBytes()) );
+
+ } catch ( IOException ioex ) {
+ ioex.printStackTrace();
+ } catch ( SAXException saxex ) {
+ saxex.printStackTrace();
+ }
+
+
+ String[] result = getTagFromSOAP( domMessage, "listmethodsResponse/classList/method" ) ;
+ for(int i=0; i< result.length;i++) System.out.println("methods=" + result[i]);
+ return result;
+
}
- public String findAlignForOntos(String onto1, String onto2) {
+ public String[] findAlignForOntos(String onto1, String onto2) {
String answer = null;
@@ -185,11 +253,25 @@ public class OnlineAlign {
catch ( Exception ex ) { ex.printStackTrace(); };
if(! connected ) return null;
- return answer;
+ Document domMessage = null;
+ try {
+ domMessage = BUILDER.parse( new ByteArrayInputStream( answer.getBytes()) );
+
+ } catch ( IOException ioex ) {
+ ioex.printStackTrace();
+ } catch ( SAXException saxex ) {
+ saxex.printStackTrace();
+ }
+
+ String[] result = getTagFromSOAP( domMessage, "findResponse/alignmentList/alid" );
+
+ for(int i=0; i< result.length;i++) System.out.println("aligns for ontos=" + result[i]);
+
+ return result;
}
- public String getAllAlign() {
+ public String[] getAllAlign() {
String answer = null;
@@ -215,8 +297,24 @@ public class OnlineAlign {
catch ( Exception ex ) { ex.printStackTrace(); };
if(! connected ) return null;
-
- return answer;
+
+ // Cut SOAP header
+ //answer = "<?xml version='1.0' encoding='utf-8' standalone='no'?>" + answer ;
+ Document domMessage = null;
+ try {
+ domMessage = BUILDER.parse( new ByteArrayInputStream( answer.getBytes()) );
+
+ } catch ( IOException ioex ) {
+ ioex.printStackTrace();
+ } catch ( SAXException saxex ) {
+ saxex.printStackTrace();
+ }
+
+
+ String[] result = getTagFromSOAP( domMessage, "listalignmentsResponse/alignmentList/alid" );
+ for(int i=0; i< result.length;i++) System.out.println("aligns=" + result[i]);
+
+ return result;
@@ -250,12 +348,31 @@ public class OnlineAlign {
// Send message
answer = sendMessage( message, params );
- // Displays it
- System.out.println("alignId="+ answer);
+ System.out.println("SOAP Match align=" + answer );
+
}
+
catch ( Exception ex ) { ex.printStackTrace(); };
if(! connected ) return null;
- return answer;
+
+ // Cut SOAP header
+ //answer = "<?xml version='1.0' encoding='utf-8' standalone='no'?>" + answer ;
+ Document domMessage = null;
+ try {
+ domMessage = BUILDER.parse( new ByteArrayInputStream( answer.getBytes()) );
+
+ } catch ( IOException ioex ) {
+ ioex.printStackTrace();
+ } catch ( SAXException saxex ) {
+ saxex.printStackTrace();
+ }
+
+
+ String result[] = getTagFromSOAP( domMessage, "matchResponse" );
+
+ System.out.println("Match align Id=" + result[0]);
+
+ return result[0];
}
@@ -289,52 +406,34 @@ public class OnlineAlign {
answer = sendMessage( message, params );
if(! connected ) return null;
- System.out.println("OwlAlign="+ answer);
+
} catch ( Exception ex ) { ex.printStackTrace(); };
- // Cut SOAP header
- String [] cutResult = answer.split("result");
+ // Cut SOAP header
+ //answer = "<?xml version='1.0' encoding='utf-8' standalone='no'?>" + answer ;
+ answer = answer.replace("<?xml version='1.0' encoding='utf-8' standalone='no'?>", "");
+
- if(cutResult==null) return null;
-
- String str = "";
-
- for(int i= 0; i< cutResult.length; i++){
-
- if(i >= 1 && i <= cutResult.length -2)
- str = str + cutResult[i];
+ Document domMessage = null;
+ try {
+ domMessage = BUILDER.parse( new ByteArrayInputStream( answer.getBytes()) );
+
+ } catch ( IOException ioex ) {
+ ioex.printStackTrace();
+ } catch ( SAXException saxex ) {
+ saxex.printStackTrace();
}
-
- //System.out.println("OwlAlign STR ="+ str);
- if(str.equals("")) return null;
- String str1 = str.substring(1, str.length() - 3);
-
- //extract id from "alid"
- //String [] sali = alignId.split("/");
- //String uniqueId = sali[sali.length-2].concat(sali[sali.length-1]);
-
-
- //Add URI to OWL file : rethink !!!
- String s1 = str1.substring(0, str1.indexOf('>') + 1 );
- String s2 = str1.substring(str1.indexOf('>') + 2, str1.length());
-
- String[] ss2 = s1.split("xmlns");
- String s3 = "<?xml version=\"1.0\"?>\n" + ss2[0] + " ";
-
- s3 = s3 + "xmlns=\"" + alignId + "#\"\n ";
- s3 = s3 + "xml:base=\"" + alignId + "\"\n ";
- s3 = s3 + "xmlns:owl=\"http://www.w3.org/2002/07/owl#\"\n " + "xmlns";
-
- for(int i=2; i<ss2.length;i++) {
- s3 = s3 + ss2[i];
- if(i != ss2.length-1 ) s3 = s3 + "xmlns";
- }
-
- return s3 + s2;
+
+ String result[] = getTagFromSOAP( domMessage, "retrieveResponse/result/RDF" );
+
+
+
+ System.out.println("OWLAlign="+ result[0]);
+ return result[0];
}
public String getRDFAlignment(String alignId) {
@@ -366,77 +465,37 @@ public class OnlineAlign {
answer = sendMessage( message, params );
if(! connected ) return null;
- System.out.println("RDFAlign="+ answer);
+
} catch ( Exception ex ) { ex.printStackTrace(); };
// Cut SOAP header
- String [] cutResult = answer.split("result");
- if(cutResult==null) return null;
-
- String str = "";
+ //answer = "<?xml version='1.0' encoding='utf-8' standalone='no'?>" + answer ;
+ answer = answer.replace("<?xml version='1.0' encoding='utf-8' standalone='no'?>", "");
+
- for(int i= 0; i< cutResult.length; i++){
-
- if(i >= 1 && i <= cutResult.length -2)
- str = str + cutResult[i];
+ Document domMessage = null;
+ try {
+ domMessage = BUILDER.parse( new ByteArrayInputStream( answer.getBytes()) );
+
+ } catch ( IOException ioex ) {
+ ioex.printStackTrace();
+ } catch ( SAXException saxex ) {
+ saxex.printStackTrace();
}
-
- //System.out.println("OwlAlign STR ="+ str);
-
- if(str.equals("")) return null;
- String str1 = str.substring(1, str.length() - 3);
-
- //Add URI to RDF file : rethink !!!
- String s1 = str1.substring(0, str1.indexOf('>') + 1 );
- String s2 = str1.substring(str1.indexOf('>') + 2, str1.length());
-
+ String result[] = getTagFromSOAP( domMessage, "retrieveResponse/result/RDF" );
+
+
+ System.out.println("RDFAlign="+ result[0]);
- return s2;
+ return result[0];
}
- public String getHTMLAlignment(String alignId) {
-
- //retrieve alignment for displaying
-
- Parameters params = new BasicParameters();
- params.setParameter( "host", HOST );
- //params.setParameter( "http", PORT );
- //params.setParameter( "wsdl", WSDL );
- params.setParameter( "command","retrieve");
- params.setParameter( "arg1", alignId);
- params.setParameter( "arg2", "fr.inrialpes.exmo.align.impl.renderer.HTMLRendererVisitor");
-
- Vector corrList = new Vector();
-
- String answer = null;
-
- try {
- // Read parameters
-
- //Parameters params = ws.readParameters( aservArgRetrieve );
-
- // Create the SOAP message
- String message = createMessage( params );
-
- System.out.println("URL SOAP :"+ SOAPUrl+ ", Action:"+ SOAPAction);
- System.out.println("Message :"+ message);
-
- // Send message
- answer = sendMessage( message, params );
-
- //corrList = getCorresFromAnswer( answer, "tr", "#" );
-
- }
- catch ( Exception ex ) { ex.printStackTrace(); };
- if(! connected ) return null;
- return answer;
-
- }
+
public String storeAlign(String alignId) {
@@ -466,7 +525,7 @@ public class OnlineAlign {
// Send message
answer = sendMessage( message, params );
- System.out.println("Stored Align="+ answer);
+
//corrList = getCorresFromAnswer( answer, "tr", "#" );
}
@@ -474,9 +533,86 @@ public class OnlineAlign {
if(! connected ) return null;
- return answer;
+ Document domMessage = null;
+ try {
+ domMessage = BUILDER.parse( new ByteArrayInputStream( answer.getBytes()) );
+
+ } catch ( IOException ioex ) {
+ ioex.printStackTrace();
+ } catch ( SAXException saxex ) {
+ saxex.printStackTrace();
+ }
+
+
+ String result[] = getTagFromSOAP( domMessage, "storeResponse" );
+
+
+ System.out.println("Stored Align="+ result[0]);
+
+ return result[0];
- }
+ }
+
+ public String[] getTagFromSOAP( Document dom, String tag ){
+ XPath XPATH = XPathFactory.newInstance().newXPath();
+ String[] result = null;
+ Node n = null;
+ NodeList nl = null;
+ try {
+ // The two first elements are prefixed by: "SOAP-ENV:"
+ if(tag.equals("listmethodsResponse/classList/method") || tag.equals("listalignmentsResponse/alignmentList/alid")
+ || tag.equals("findResponse/alignmentList/alid") ) {
+ nl = (NodeList)(XPATH.evaluate("/Envelope/Body/" + tag, dom, XPathConstants.NODESET));
+ result = new String[nl.getLength()];
+
+ for (int i=0; i< nl.getLength(); i++) {
+ Node method = (Node) nl.item(i);
+
+ Node firstnode = method.getFirstChild();
+ String nm = firstnode.getNodeValue();
+
+ if(nm!=null) result[i] = nm;
+
+ }
+ } else if (tag.equals("retrieveResponse/result/RDF") ) {
+ n = (Node)(XPATH.evaluate("/Envelope/Body/" + tag, dom, XPathConstants.NODE));
+ ByteArrayOutputStream stream = new ByteArrayOutputStream();
+ try {
+ Transformer tf = TransformerFactory.newInstance().newTransformer();
+ tf.setOutputProperty(OutputKeys.ENCODING,"utf-8");
+ tf.setOutputProperty(OutputKeys.INDENT,"yes");
+
+ tf.transform(new DOMSource(n),new StreamResult(stream));
+ }
+ catch (Exception e){}
+ //Node firstnode = n.getFirstChild();
+
+ String nm = stream.toString();
+ result = new String[1];
+ result[0] = nm;
+ //System.out.println("result retrieve="+result[0]);
+ //System.out.println("no first="+ n.getNodeValue());
+ } else {
+ Node nn = (Node)(XPATH.evaluate("/Envelope/Body/" + tag, dom, XPathConstants.NODE));
+ result = new String[1];
+
+ NodeList ns = nn.getChildNodes();
+
+ //tag "alid" is third
+ Node n3 = (Node) ns.item(2);
+ Node nx = n3.getFirstChild();
+ String nm = nx.getNodeValue();
+
+ result[0] = nm;
+ }
+
+ } catch (XPathExpressionException e) {
+ } catch (NullPointerException e) {
+ }
+
+ return result;
+ }
+
public String createMessage( Parameters params ) throws Exception {
String messageBegin = "<SOAP-ENV:Envelope xmlns:SOAP-ENV=\'http://schemas.xmlsoap.org/soap/envelope/\' " +
@@ -736,6 +872,7 @@ public class OnlineAlign {
fi.close();
System.out.println("Upload Read done.");
+
// Read the response
InputStreamReader isr = new InputStreamReader(httpConn.getInputStream());
BufferedReader in = new BufferedReader(isr);
diff --git a/plugins/neon/src/fr/inrialpes/exmo/align/plugin/neontk/SWTInterface.java b/plugins/neon/src/fr/inrialpes/exmo/align/plugin/neontk/SWTInterface.java
index 606cc7ab1f0ba55df79f7329fab7dedac37a5147..bc7b8d37a35c8aec0d30d1845c09104cedd3800d 100644
--- a/plugins/neon/src/fr/inrialpes/exmo/align/plugin/neontk/SWTInterface.java
+++ b/plugins/neon/src/fr/inrialpes/exmo/align/plugin/neontk/SWTInterface.java
@@ -99,6 +99,8 @@ import com.ontoprise.ontostudio.datamodel.exception.ControlException;
import fr.inrialpes.exmo.align.parser.AlignmentParser;
import org.semanticweb.owl.align.Cell;
+import fr.inrialpes.exmo.align.impl.Ontology;
+import fr.inrialpes.exmo.align.impl.BasicCell;
//import org.semanticweb.owl.align.Relation;
import fr.inrialpes.exmo.align.impl.BasicAlignment;
@@ -397,13 +399,13 @@ public class SWTInterface extends JPanel {
selectedPort = portField.getText();
onAlign = new OnlineAlign(selectedPort, selectedHost);
- String mt = onAlign.getMethods();
- if(mt == null) {
+ String list[] = onAlign.getMethods();
+ if(list == null || list.length ==0) {
JOptionPane.showMessageDialog(null, "Impossible connection!","Warning",2);
return;
}
- String[] list = getResultsFromAnswer( mt, "method", null ); //"."
+ //String[] list = getResultsFromAnswer( mt, "method", null ); //"."
methodList = new String[list.length];
strategy.removeAllItems();
@@ -517,7 +519,7 @@ public class SWTInterface extends JPanel {
}
File fn = new File(selectedLocalAlign + ".owl");
-
+ //if (fn.exists()) fn.delete();
//System.out.println("Filename off to export :"+ fn.getAbsolutePath());
corrList = getCorresFromAnswer( SWTInterface.alignmentTable.get(selectedLocalAlign) );
@@ -569,7 +571,6 @@ public class SWTInterface extends JPanel {
proper.put(IConfig.ONTOLOGY_LANGUAGE.toString(), IConfig.OntologyLanguage.OWL.toString());
new CreateProject( inputName, DatamodelTypes.RAM, proper ).run();
- // ProjectControl.getDefault().createNewOntologyProject(inputName, new String[0]);
}
ImportExportControl ieControl = new ImportExportControl();
@@ -599,12 +600,14 @@ public class SWTInterface extends JPanel {
//System.out.println("file name off to export :"+ fn.getName());
try {
- onAlign.uploadAlign(selectedLocalAlign + ".rdf");
+ String uploaded = onAlign.uploadAlign(selectedLocalAlign + ".rdf");
localAlignIdList = new String[1];
localAlignIdList[0] = selectedLocalAlign;
localAlignBox.removeAllItems();
localAlignBox.addItem(selectedLocalAlign);
+
+ JOptionPane.showMessageDialog(null, "Uploaded alignment : "+ uploaded,"Warning",2);
} catch ( Exception ex ) { ex.printStackTrace();}
}
@@ -640,11 +643,15 @@ public class SWTInterface extends JPanel {
try {
File rdfFile = new File( rdfPath );
+ //if (rdfFile.exists()) rdfFile.delete();
+
out = new FileWriter( rdfFile );
out.write( rdfalignStr );
- //out.write( answer );
+ out.flush();
out.close();
+
File file = new File(rdfPath);
+
AlignmentParser ap = new AlignmentParser(1);
Alignment align = ap.parse(file.toURI().toString());
@@ -699,8 +706,6 @@ public class SWTInterface extends JPanel {
catch ( Exception ex ) { ex.printStackTrace();};
//get align from server, then export it as owl onto
- String owlPath = ontoFolder.getAbsolutePath() + File.separator + getNewAlignId() + ".owl";
-
String owlalignStr = onAlign.getOWLAlignment( selectedAlign );
@@ -736,17 +741,21 @@ public class SWTInterface extends JPanel {
new CreateProject( inputName, DatamodelTypes.RAM, proper ).run();
}
}
-
+
+ String owlPath = ontoFolder.getAbsolutePath() + File.separator + getNewAlignId() + ".owl";
File owlFile = new File( owlPath );
+ if (owlFile.exists()) owlFile.delete();
+
out = new FileWriter( owlFile );
out.write( owlalignStr );
- //out.write( answer );
+ out.flush();
out.close();
+
try {
ImportExportControl ieControl = new ImportExportControl();
String[] importedModules = ieControl.importFileSystem(inputName, "file:" + owlPath, null);
- //ieControl.addOntologies2Project(importedModules, inputName);
+ //ieControl.addOntologies2Project(importedModules, inputName);
} catch ( ControlException ex ) { }
}
@@ -764,14 +773,15 @@ public class SWTInterface extends JPanel {
// for connecting to server
//onAlign = new OnlineAlign(selectedPort, selectedHost);
+ String[] list = null;
if(online) {
- String aa = onAlign.getAllAlign();
- if(aa == null) {
+ list = onAlign.getAllAlign();
+ if(list == null || list.length==0) {
JOptionPane.showMessageDialog(null, "Impossible connection!","Warning",2);
return;
}
- String[] list = getResultsFromAnswer( aa , "alid", null );
+ //String[] list = getResultsFromAnswer( aa , "alid", null );
alignIdList = new String[list.length];
alignBox.removeAllItems();
@@ -804,7 +814,7 @@ public class SWTInterface extends JPanel {
}
else { //offline
- String[] list = offAlign.getAllAlign( );
+ list = offAlign.getAllAlign( );
if(list!=null) {
localAlignIdList = new String[list.length];
localAlignBox.removeAllItems();
@@ -835,11 +845,11 @@ public class SWTInterface extends JPanel {
JOptionPane.showMessageDialog(null, "Choose two ontologies from lists!","Warning",2);
else {
- String ao = onAlign.findAlignForOntos(selectedOnto1, selectedOnto2);
- if(ao == null)
+ String[] list = onAlign.findAlignForOntos(selectedOnto1, selectedOnto2);
+ if(list == null || list.length==0)
JOptionPane.showMessageDialog(null, "Impossible connection!","Warning",2);
else {
- String[] list = getResultsFromAnswer(ao, "alid", null );
+ //String[] list = getResultsFromAnswer(ao, "alid", null );
alignIdList = new String[list.length];
alignBox.removeAllItems();
@@ -879,22 +889,21 @@ public class SWTInterface extends JPanel {
String at = onAlign.trimAlign(selectedAlign, thres);
- if(at == null)
+ if(at == null || at.equals(""))
JOptionPane.showMessageDialog(null, "Impossible connection!","Warning",2);
else {
- String[] list = getResultsFromAnswer( at, "alid", null );
+ //String[] list = getResultsFromAnswer( at, "alid", null );
- alignIdList = new String[list.length];
+ //alignIdList = new String[list.length];
+ alignIdList = new String[1];
alignBox.removeAllItems();
- for(int i=0; i< list.length; i++){
- alignIdList[i]= list[i];
- alignBox.addItem(list[i]);
- }
+ alignIdList[0]= at;
+ alignBox.addItem(at);
+
+ selectedAlign = alignIdList[0];
- if(alignIdList.length > 0) {
- selectedAlign = alignIdList[0];
- }
+
}
}
@@ -947,9 +956,21 @@ public class SWTInterface extends JPanel {
else {
String sto = onAlign.storeAlign(selectedAlign);
- if(sto == null)
+
+ if(sto == null || sto.equals("") )
JOptionPane.showMessageDialog(null, "Impossible connection!","Warning",2);
-
+ else {
+ alignIdList = new String[1];
+ alignBox.removeAllItems();
+
+ alignIdList[0]= sto;
+ alignBox.addItem(sto);
+
+ selectedAlign = alignIdList[0];
+ JOptionPane.showMessageDialog(null, "Stored alignment : "+ sto ,"Warning",2);
+ }
+
+
}
}
@@ -987,30 +1008,19 @@ public class SWTInterface extends JPanel {
}
String answer = onAlign.getAlignId( matchMethod, selectedOnto1, selectedOnto2 );
- if(answer==null) {
+ if(answer==null || answer.equals("")) {
JOptionPane.showMessageDialog(null, "Alignment is not produced.","Warning",2);
return;
}
-
- alignIdList = getResultsFromAnswer( answer, "alid", null );
- if(alignIdList==null || alignIdList[0].equals("null")) JOptionPane.showMessageDialog(null, "Alignment is not produced.","Warning",2);
- else {
-
- alignBox.removeAllItems();
+
+ alignIdList = new String[1];
+ alignIdList[0] = answer;
+ alignBox.removeAllItems();
+ alignBox.addItem(alignIdList[0]);
+ selectedAlign = alignIdList[0];
- for(int i=0; i< alignIdList.length; i++){
-
- alignBox.addItem(alignIdList[i]);
- }
-
- if(alignIdList.length > 0) {
- selectedAlign = alignIdList[0];
- }
- }
-
-
-
+
}
else { //offline
@@ -1349,18 +1359,18 @@ private HashMap<String,String> refreshOntoList() {
for(int i=0; i<cells.size(); i++) {
try {
- corr = new String[4];
+ corr = new String[4];
- corr[0] = cells.get(i).getObject1AsURI().toString();
+ corr[0] = ((BasicCell)cells.get(i)).getObject1().toString();
//by default : equivalence
//corr[1] = cells.get(i).getRelation().toString();
corr[1] = "=";
corr[2] = (new Double(cells.get(i).getStrength())).toString();
- corr[3] = cells.get(i).getObject2AsURI().toString();
+ corr[3] = ((BasicCell)cells.get(i)).getObject2().toString();
names.add(corr);
- }catch (Exception e) {}
+ }catch (Exception ex) { ex.printStackTrace(); }
}
return names;