From 9415c7f3f17a18bab36d1115e28cf276c7f55378 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?J=C3=A9r=C3=B4me=20Euzenat?= <Jerome.Euzenat@inria.fr>
Date: Sat, 10 Feb 2007 20:46:32 +0000
Subject: [PATCH] - Modified the database schema (larger size -- exceded in
some example) - protected (quote) database assertions - added initDatabase,
resetDatabase and first updateDatabase - rewrote all sql statements in
uppercase - added version attribute and stored in database - added log in the
database of the server and check it before reset - added copyright notice for
the RTSI snippet and JWhich
---
.../align/service/AServProtocolManager.java | 78 ++++----
.../exmo/align/service/AlignmentService.java | 5 +-
.../inrialpes/exmo/align/service/Cache.java | 5 +-
.../exmo/align/service/CacheImpl.java | 179 ++++++++++++++++--
.../exmo/align/service/DBServiceImpl.java | 6 +-
.../inrialpes/exmo/align/service/dbschema.sql | 65 -------
6 files changed, 209 insertions(+), 129 deletions(-)
delete mode 100644 src/fr/inrialpes/exmo/align/service/dbschema.sql
diff --git a/src/fr/inrialpes/exmo/align/service/AServProtocolManager.java b/src/fr/inrialpes/exmo/align/service/AServProtocolManager.java
index a96abcc1..df41696b 100644
--- a/src/fr/inrialpes/exmo/align/service/AServProtocolManager.java
+++ b/src/fr/inrialpes/exmo/align/service/AServProtocolManager.java
@@ -16,6 +16,37 @@
* You should have received a copy of the GNU Lesser General Public License
* along with this program; if not, write to the Free Software
* Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA.
+ *
+ * A small part of this class (within the implementations() method) is:
+ * Copyright (C) Daniel Le Berre, 2001
+ * from his util.RTSI class
+ * which contains a few lines:
+ * Copyright (C) 2002-2005, FullSpan Software
+ * under BSD licence
+ *
+ * Redistribution and use in source and binary forms, with or without
+ * modification, are permitted provided that the following conditions are met:
+ *
+ * - Redistributions of source code must retain the above copyright notice,
+ * this list of conditions and the following disclaimer.
+ * - Redistributions in binary form must reproduce the above copyright notice,
+ * this list of conditions and the following disclaimer in the documentation
+ * and/or other materials provided with the distribution.
+ * - Neither the name of FullSpan Software nor the names of its contributors
+ * may be used to endorse or promote products derived from this software
+ * without specific prior written permission.
+ *
+ * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
+ * AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
+ * IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
+ * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE
+ * LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
+ * CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
+ * SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS
+ * INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN
+ * CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
+ * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF
+ * THE POSSIBILITY OF SUCH DAMAGE.
*/
package fr.inrialpes.exmo.align.service;
@@ -31,7 +62,6 @@ import org.semanticweb.owl.align.AlignmentProcess;
import org.semanticweb.owl.align.AlignmentVisitor;
import org.semanticweb.owl.align.AlignmentException;
-//*/3.0
import org.semanticweb.owl.util.OWLManager;
import org.semanticweb.owl.model.OWLOntology;
import org.semanticweb.owl.model.OWLException;
@@ -96,9 +126,9 @@ public class AServProtocolManager {
public void init( DBService connection, Parameters p ) throws SQLException {
alignmentCache = new CacheImpl( connection );
- alignmentCache.init();
+ alignmentCache.init( p );
// dummy string
- myId = "localhost://alignserv";
+ myId = "http://"+p.getParameter("host")+":"+p.getParameter("port");
renderers = implementations( "org.semanticweb.owl.align.AlignmentVisitor" );
methods = implementations( "org.semanticweb.owl.align.AlignmentProcess" );
methods.remove("fr.inrialpes.exmo.align.impl.DistanceAlignment"); // this one is generic
@@ -121,6 +151,8 @@ public class AServProtocolManager {
}
public void close() {
+ try { alignmentCache.close(); }
+ catch (SQLException sqle) { sqle.printStackTrace(); }
}
private int newId() { return localId++; }
@@ -195,17 +227,11 @@ public class AServProtocolManager {
if ( params.getParameter("init") != null && !params.getParameter("init").equals("") ) {
try {
//if (debug > 0) System.err.println(" Retrieving init");
- //AlignmentParser aparser = new AlignmentParser(0);
- //init = aparser.parse((String)params.getParameter("init"), loadedOntologies);
try {
init = alignmentCache.getAlignment( (String)params.getParameter("init") );
} catch (Exception e) {
return new UnknownAlignment(newId(),mess,myId,mess.getSender(),(String)params.getParameter("init"),(Parameters)null);
}
- // Not really useful
- //onto1 = (OWLOntology)init.getOntology1();
- //onto2 = (OWLOntology)init.getOntology2();
- //if (debug > 0) System.err.println(" Init retrieved");
} catch (Exception e) {
return new UnknownAlignment(newId(),mess,myId,mess.getSender(),(String)params.getParameter("init"),(Parameters)null);
}
@@ -241,8 +267,6 @@ public class AServProtocolManager {
if ( method == null )
method = "fr.inrialpes.exmo.align.impl.method.StringDistAlignment";
Class alignmentClass = Class.forName(method);
- //Class oClass = Class.forName("org.semanticweb.owl.model.OWLOntology");
- //Class[] cparams = { oClass, oClass };
Class[] cparams = {};
java.lang.reflect.Constructor alignmentConstructor = alignmentClass.getConstructor(cparams);
AlignmentProcess result = (AlignmentProcess)alignmentConstructor.newInstance(mparams);
@@ -295,31 +319,13 @@ public class AServProtocolManager {
} catch (Exception e) {
return new ErrorMsg(newId(),mess,myId,mess.getSender(),"MalformedURI problem",(Parameters)null);
}; //done below
- // This useless and is done only for launching the error
- //OWLOntology onto1 = reachable( uri1 );
- //OWLOntology onto2 = reachable( uri2 );
- //if ( onto1 == null ){
- // Unreachable
- // return new UnreachableOntology(newId(),mess,myId,mess.getSender(),(String)params.getParameter("onto1"),(Parameters)null);
- //} else if ( onto2 == null ){
- // return new UnreachableOntology(newId(),mess,myId,mess.getSender(),(String)params.getParameter("onto2"),(Parameters)null);
- //} else {
- // try {
- // find it
- // Set alignments = alignmentCache.getAlignments( onto1.getLogicalURI(), onto2.getLogicalURI() );
- Set alignments = alignmentCache.getAlignments( uri1, uri2 );
- String msg = "";
- for( Iterator it = alignments.iterator(); it.hasNext(); ){
- //ids.put( ((Alignment)it.next()).getExtension( "id" ) );
- msg += ((Alignment)it.next()).getExtension( "id" );
- msg += " ";
- }
- return new AlignmentIds(newId(),mess,myId,mess.getSender(),msg,(Parameters)null);
- // } catch (Exception e) { // URI problems in gLU
- //e.printStackTrace();
- //return new ErrorMsg(newId(),mess,myId,mess.getSender(),"getlogicalURI problem on the ontologies",(Parameters)null);
- //}
- //}
+ Set alignments = alignmentCache.getAlignments( uri1, uri2 );
+ String msg = "";
+ for( Iterator it = alignments.iterator(); it.hasNext(); ){
+ msg += ((Alignment)it.next()).getExtension( "id" );
+ msg += " ";
+ }
+ return new AlignmentIds(newId(),mess,myId,mess.getSender(),msg,(Parameters)null);
}
// ABSOLUTELY NOT IMPLEMENTED
diff --git a/src/fr/inrialpes/exmo/align/service/AlignmentService.java b/src/fr/inrialpes/exmo/align/service/AlignmentService.java
index 4897ca03..3763552a 100644
--- a/src/fr/inrialpes/exmo/align/service/AlignmentService.java
+++ b/src/fr/inrialpes/exmo/align/service/AlignmentService.java
@@ -137,14 +137,15 @@ public class AlignmentService {
// Close services
for ( Enumeration e = services.elements() ; e.hasMoreElements() ; ) {
AlignmentServiceProfile serv = (AlignmentServiceProfile)e.nextElement();
- try { serv.close();
- } catch ( AServException ex ) {
+ try { serv.close(); }
+ catch ( AServException ex ) {
System.err.println("Cannot close "+serv);
ex.printStackTrace();
}
}
// Shut down database connection
+ manager.close();
connection.close();
if ( debug > 0 ) System.err.println("Database connection closed");
}
diff --git a/src/fr/inrialpes/exmo/align/service/Cache.java b/src/fr/inrialpes/exmo/align/service/Cache.java
index 66653bdf..1cd16144 100644
--- a/src/fr/inrialpes/exmo/align/service/Cache.java
+++ b/src/fr/inrialpes/exmo/align/service/Cache.java
@@ -1,7 +1,7 @@
/*
* $Id$
*
- * Copyright (C) XX, 2006
+ * Copyright (C) Seungkeun Lee, 2006
* Copyright (C) INRIA Rh�ne-Alpes, 2006-2007
*
* This program is free software; you can redistribute it and/or
@@ -27,9 +27,10 @@ import java.sql.SQLException;
import org.semanticweb.owl.align.Alignment;
import org.semanticweb.owl.align.AlignmentException;
+import org.semanticweb.owl.align.Parameters;
public interface Cache {
- void init() throws SQLException;
+ void init( Parameters p ) throws SQLException;
Alignment getMetadata( String id ) throws Exception;
Alignment getAlignment( String id ) throws Exception;
Set getAlignments( URI uri );
diff --git a/src/fr/inrialpes/exmo/align/service/CacheImpl.java b/src/fr/inrialpes/exmo/align/service/CacheImpl.java
index 10344629..650b4abd 100644
--- a/src/fr/inrialpes/exmo/align/service/CacheImpl.java
+++ b/src/fr/inrialpes/exmo/align/service/CacheImpl.java
@@ -45,6 +45,7 @@ import fr.inrialpes.exmo.align.impl.URICell;
import org.semanticweb.owl.align.Alignment;
import org.semanticweb.owl.align.AlignmentException;
import org.semanticweb.owl.align.Cell;
+import org.semanticweb.owl.align.Parameters;
/**
* This class caches the content of the alignment database. I.e.,
@@ -56,7 +57,13 @@ import org.semanticweb.owl.align.Cell;
public class CacheImpl implements Cache {
Hashtable alignmentTable = null;
Hashtable ontologyTable = null;
+
+ String host = null;
+ String port = null;
+ int rights = 1; // writing rights in the database (default is 1)
+ final int VERSION = 300; // Version of the API to be stored in the database
+
Statement st = null;
ResultSet rs = null;
Connection conn = null;
@@ -82,11 +89,25 @@ public class CacheImpl implements Cache {
* loads the alignment descriptions from the database and put them in the
* alignmentTable hashtable
*/
- public void init() throws SQLException {
+ public void init( Parameters p ) throws SQLException {
+ port = (String)p.getParameter("http"); // bad idea
+ host = (String)p.getParameter("host");
+ // test if a database is here, otherwise create it
+ rs = (ResultSet)st.executeQuery("SHOW TABLES LIKE 'server'");
+ if ( !rs.next() ) initDatabase();
+ // register by the database
+ st.executeUpdate("INSERT INTO server (host, port, edit, version) VALUES ('"+host+"','"+port+"','"+rights+"',"+VERSION+")");
+ // load alignment descriptions
loadAlignments( true );
}
- //**********************************************************************
+ public void close() throws SQLException {
+ // unregister by the database
+ st.executeUpdate("DELETE FROM server WHERE host='"+host+"' AND port='"+port+"'");
+ }
+
+ // **********************************************************************
+ // LOADING FROM DATABASE
/**
* loads the alignment descriptions from the database and put them in the
* alignmentTable hashtable
@@ -110,8 +131,7 @@ public class CacheImpl implements Cache {
if (force) {
// Retrieve the alignment ids
- query = "select id " + "from alignment";
- rs = (ResultSet) st.executeQuery(query);
+ rs = (ResultSet) st.executeQuery("SELECT id FROM alignment");
while(rs.next()) {
id = rs.getString("id");
idInfo.add(id);
@@ -143,7 +163,7 @@ public class CacheImpl implements Cache {
try {
// Get basic ontology metadata
- query = "select * from alignment where id = '" + id +"'";
+ query = "SELECT * FROM alignment WHERE id = '" + id +"'";
rs = (ResultSet) st.executeQuery(query);
while(rs.next()) {
// Either uri1 or file1
@@ -156,7 +176,7 @@ public class CacheImpl implements Cache {
}
// Get extension metadata
- query = "select * from extension where id = '" + id + "'";
+ query = "SELECT * FROM extension WHERE id = '" + id + "'";
rs = (ResultSet) st.executeQuery(query);
while(rs.next()) {
tag = rs.getString("tag");
@@ -193,7 +213,7 @@ public class CacheImpl implements Cache {
result.setOntology2( new URI( result.getExtension( "ouri2" ) ) );
// Get cells
- query = "select * from cell where id = '" + id + "'";
+ query = "SELECT * FROM cell WHERE id = '" + id + "'";
rs = (ResultSet) st.executeQuery(query);
while(rs.next()) {
ent1 = new URI(rs.getString("uri1"));
@@ -213,11 +233,7 @@ public class CacheImpl implements Cache {
private String generateAlignmentId() {
// Generate an id based on a URI prefix + Date + random number
- Date date;
- String id;
- date = new Date();
- id = "http://localhost:8089/" + date.getTime() + "/" + randomNum();
- return id;
+ return "http://"+host+":"+port+"/alid/" + new Date().getTime() + "/" + randomNum();
}
private int randomNum() {
@@ -226,6 +242,7 @@ public class CacheImpl implements Cache {
}
//**********************************************************************
+ // FETCHING FROM CACHE
/**
* retrieve alignment metadata from id
* This is more difficult because we return the alignment we have
@@ -233,10 +250,8 @@ public class CacheImpl implements Cache {
*/
public Alignment getMetadata( String id ) throws Exception {
Alignment result = (Alignment)alignmentTable.get( id );
-
if ( result == null )
throw new Exception("getMetadata: Cannot find alignment");
-
return result;
}
@@ -258,7 +273,6 @@ public class CacheImpl implements Cache {
return result;
}
- //**********************************************************************
public Set getAlignments( URI uri ) {
return (Set)ontologyTable.get( uri );
}
@@ -277,6 +291,8 @@ public class CacheImpl implements Cache {
return result;
}
+ //**********************************************************************
+ // RECORDING ALIGNMENTS
/**
* records newly created alignment
*/
@@ -336,6 +352,36 @@ public class CacheImpl implements Cache {
}
//**********************************************************************
+ // STORING IN DATABASE
+ /**
+ * quote:
+ * Prepare a string to be used in SQL queries by preceeding occurences of
+ * "'", """, and "\" by a "\".
+ * This should be implemented at a lower level within Java itself
+ * (or the sql package).
+ * This function is used here for protecting everything to be entered in
+ * the database
+ */
+ public String quote( String s ) {
+ String result = null;
+ char[] chars = s.toCharArray();
+ int j = 0;
+ int i = 0;
+ char c;
+ for ( ; i < chars.length; i++ ){
+ c = chars[i];
+ if ( c == '\'' || c == '"' || c == '\\' ) {
+ result += new String( chars, j, i-j ) + "\\" + c;
+ j = i+1;
+ };
+ }
+ if ( result != null ) {
+ return result + new String( chars, j, i-j );
+ } else {
+ return s;
+ }
+ }
+
public void storeAlignment( String id ) throws Exception {
String query = null;
Alignment alignment = null;
@@ -366,16 +412,16 @@ public class CacheImpl implements Cache {
String type = alignment.getType();
String level = alignment.getLevel();
- query = "insert into alignment " +
+ query = "INSERT INTO alignment " +
"(id, owlontology1, owlontology2, type, level, file1, file2, uri1, uri2) " +
- "values ('" + id + "','" + s_O1 + "','" + s_O2 + "','" + type + "','" + level + "','" + s_File1 + "','" + s_File2 + "','" + s_uri1 + "','" + s_uri2 + "')";
+ "VALUES ('" + quote(id) + "','" + quote(s_O1) + "','" + quote(s_O2) + "','" + quote(type) + "','" + quote(level) + "','" + quote(s_File1) + "','" + quote(s_File2) + "','" + quote(s_uri1) + "','" + quote(s_uri2) + "')";
st.executeUpdate(query);
for( Enumeration e = alignment.getExtensions().getNames() ; e.hasMoreElements() ; ){
String tag = (String)e.nextElement();
String s_method = alignment.getExtension(tag);
- query = "insert into extension " +
+ query = "INSERT INTO extension " +
"(id, tag, method) " +
- "values ('" + id + "','" + tag + "','" + s_method + "')";
+ "VALUES ('" + quote(id) + "','" + quote(tag) + "','" + quote(s_method) + "')";
st.executeUpdate(query);
}
@@ -394,9 +440,9 @@ public class CacheImpl implements Cache {
temp[4] = c.getSemantics();
else temp[4] = "";
temp[5] = ((BasicRelation)c.getRelation()).getRelation();
- query = "insert into cell " +
+ query = "INSERT INTO cell " +
"(id, cell_id, uri1, uri2, measure, semantics, relation) " +
- "values ('" + id + "','" + temp[0] + "','" + temp[1] + "','" + temp[2] + "','" + temp[3] + "','" + temp[4] + "','" + temp[5] + "')";
+ "VALUES ('" + quote(id) + "','" + quote(temp[0]) + "','" + quote(temp[1]) + "','" + quote(temp[2]) + "','" + quote(temp[3]) + "','" + quote(temp[4]) + "','" + quote(temp[5]) + "')";
st.executeUpdate(query);
}
}
@@ -406,6 +452,7 @@ public class CacheImpl implements Cache {
}
//**********************************************************************
+ // CACHE MANAGEMENT (Not implemented yet)
public void resetCacheStamp( Alignment result ){
result.setExtension("fr.inrialpes.exmo.align.service.cached", new Date().toString() );
}
@@ -418,4 +465,94 @@ public class CacheImpl implements Cache {
// - clean up cells
// }
}
+
+ // **********************************************************************
+ // DATABASE CREATION AND UPDATING
+ /*
+ # server info
+
+ create table server (
+ host varchar(50),
+ port varchar(5),
+ edit varchar(5)
+ );
+
+
+ # alignment info
+
+ create table alignment (
+ id varchar(100),
+ owlontology1 varchar(250),
+ owlontology2 varchar(250),
+ type varchar(5),
+ level varchar(1),
+ file1 varchar(250),
+ file2 varchar(250),
+ uri1 varchar(250),
+ uri2 varchar(250));
+
+ # cell info
+
+ create table cell(
+ id varchar(100),
+ cell_id varchar(250),
+ uri1 varchar(250),
+ uri2 varchar(250),
+ semantics varchar(30),
+ measure varchar(20),
+ relation varchar(5));
+
+ # extension info
+
+ create table extension(
+ id varchar(100),
+ tag varchar(100),
+ method varchar(500));
+
+ */
+
+ public void initDatabase() throws SQLException {
+ // Create tables
+ st.executeUpdate("CREATE TABLE alignment (id VARCHAR(100), owlontology1 VARCHAR(250), owlontology2 VARCHAR(250), type VARCHAR(5), level VARCHAR(1), file1 VARCHAR(250), file2 VARCHAR(250), uri1 VARCHAR(250), uri2 VARCHAR(250))");
+ st.executeUpdate("CREATE TABLE cell(id VARCHAR(100), cell_id VARCHAR(250), uri1 VARCHAR(250), uri2 VARCHAR(250), semantics VARCHAR(30), measure VARCHAR(20), relation VARCHAR(5))");
+ st.executeUpdate("CREATE TABLE extension(id VARCHAR(100), tag VARCHAR(100), method VARCHAR(500))");
+ st.executeUpdate("CREATE TABLE server (host VARCHAR(50), port VARCHAR(5), edit BOOLEAN, version VARCHAR(5))");
+ st.executeUpdate("INSERT INTO server (host, port, edit, version) VALUES ('dbms', 'port', 0, '"+VERSION+"')");
+ }
+
+ public void resetDatabase( boolean force ) throws SQLException, AlignmentException {
+ // Check that no one else is connected...
+ if ( force != true ){
+ ResultSet rs = (ResultSet) st.executeQuery("SELECT COUNT(*) AS rowcount FROM server WHERE edit=1");
+ rs.next();
+ int count = rs.getInt("rowcount") ;
+ rs.close() ;
+ if ( count > 1 ) {
+ throw new AlignmentException("Cannot init database: other processes use it");
+ }
+ }
+ // Suppress old database if exists
+ st.executeUpdate("DROP TABLE IF EXISTS server");
+ st.executeUpdate("DROP TABLE IF EXISTS alignment");
+ st.executeUpdate("DROP TABLE IF EXISTS cell");
+ st.executeUpdate("DROP TABLE IF EXISTS extension");
+ // Redo it
+ initDatabase();
+ // Register this server, etc. characteristics (incl. version name)
+ st.executeUpdate("INSERT INTO server (host, port, edit, version) VALUES ('"+host+"','"+port+"','"+rights+"',"+VERSION+")");
+ }
+
+ public void updateDatabase( ) throws SQLException, AlignmentException {
+ // get the version number
+ ResultSet rs = (ResultSet) st.executeQuery("SELECT version FROM server WHERE port='port'");
+ rs.next();
+ int version = rs.getInt("version") ;
+ if ( version <= VERSION ) {
+ throw new AlignmentException("Database must be upgraded ("+version+" -> "+VERSION+")");
+ // In theory it is possible to:
+ // - fully load all the database
+ // - resetDatabase( false );
+ // - completely save the database
+ }
+ }
}
diff --git a/src/fr/inrialpes/exmo/align/service/DBServiceImpl.java b/src/fr/inrialpes/exmo/align/service/DBServiceImpl.java
index d7ddd5d0..f914a963 100644
--- a/src/fr/inrialpes/exmo/align/service/DBServiceImpl.java
+++ b/src/fr/inrialpes/exmo/align/service/DBServiceImpl.java
@@ -53,15 +53,15 @@ public class DBServiceImpl implements DBService{
}
public void connect( String password ) throws SQLException {
- connect( IPAddress, port, user, password );
+ connect( IPAddress, port, user, password, database );
}
public void connect( String user, String password ) throws SQLException {
- connect( IPAddress, port, user, password );
+ connect( IPAddress, port, user, password, database );
}
public void connect( String port, String user, String password ) throws SQLException {
- connect( IPAddress, port, user, password );
+ connect( IPAddress, port, user, password, database );
}
public void connect(String IPAddress, String port, String user, String password ) throws SQLException {
diff --git a/src/fr/inrialpes/exmo/align/service/dbschema.sql b/src/fr/inrialpes/exmo/align/service/dbschema.sql
deleted file mode 100644
index a3dd3761..00000000
--- a/src/fr/inrialpes/exmo/align/service/dbschema.sql
+++ /dev/null
@@ -1,65 +0,0 @@
-#
-# Create the database. If you change any value here, report
-# the changes in the DBInfo.php file.
-#
-
-CREATE DATABASE AServDB;
-
-#
-# Create a MySQL user. Change 'localhost' to the name of the server
-# that hosts MySQL.
-#
-
-GRANT ALL PRIVILEGES ON AServDB.* TO adminAServ@localhost
- IDENTIFIED BY 'aaa345';
-
-#
-# Create a MySQL user with restricted right for SQL queries
-#
-
-GRANT select ON AServ.* TO alignserver@localhost IDENTIFIED BY 'adf342';
-
-connect AServDB;
-
-# server info
-
-create table server (
- host varchar(50),
- port varchar(5),
- edit varchar(5)
-);
-
-
-# alignment info
-
-create table alignment (
- id varchar(100),
- owlontology1 varchar(100),
- owlontology2 varchar(100),
- type varchar(5),
- level varchar(1),
- file1 varchar(100),
- file2 varchar(100),
- uri1 varchar(100),
- uri2 varchar(100));
-
-
-# cell info
-
-create table cell(
- id varchar(100),
- cell_id varchar(20),
- uri1 varchar(100),
- uri2 varchar(100),
- semantics varchar(30),
- measure varchar(20),
- relation varchar(5));
-
-
-# extension info
-
-create table extension(
- id varchar(100),
- tag varchar(100),
- method varchar(500));
-
--
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