From 6f18de507098dae61b28f13e79b40746ed0b0dd6 Mon Sep 17 00:00:00 2001
From: Nicolas Guillouet <nicolas@meaningengines.com>
Date: Tue, 8 Jul 2014 15:42:25 +0000
Subject: [PATCH] Modification of queries generation (on
fr.inrialpes.exmo.align.impl.renderer.GraphPatternRendererVisitor) for using
federated queries + first test for SPARQLSelectRendererVisitor
---
.../renderer/GraphPatternRendererVisitor.java | 24 ++++++-
.../SPARQLConstructRendererVisitor.java | 2 +-
test/input/alignment1.rdf | 12 ++--
test/input/alignment2.rdf | 63 +++++++++++++++++
test/src/SPARQLConstructVisitorTest.java | 70 +++++++++++--------
test/src/SPARQLSelectRendererVisitorTest.java | 70 +++++++++++++++++++
6 files changed, 203 insertions(+), 38 deletions(-)
create mode 100644 test/input/alignment2.rdf
create mode 100644 test/src/SPARQLSelectRendererVisitorTest.java
diff --git a/src/fr/inrialpes/exmo/align/impl/renderer/GraphPatternRendererVisitor.java b/src/fr/inrialpes/exmo/align/impl/renderer/GraphPatternRendererVisitor.java
index 3b199b98..dfdb0680 100644
--- a/src/fr/inrialpes/exmo/align/impl/renderer/GraphPatternRendererVisitor.java
+++ b/src/fr/inrialpes/exmo/align/impl/renderer/GraphPatternRendererVisitor.java
@@ -77,6 +77,8 @@ import java.util.LinkedList;
public abstract class GraphPatternRendererVisitor extends IndentedRendererVisitor implements EDOALVisitor {
final static Logger logger = LoggerFactory.getLogger(GraphPatternRendererVisitor.class);
+ protected static String FEDERATED_SERVICE_INTRODUCTION = "FEDERATED_SERVICE_BEGIN";
+ protected static String FEDERATED_SERVICE_FINALIZATION = "FEDERATED_SERVICE_END";
Alignment alignment = null;
Cell cell = null;
@@ -237,13 +239,21 @@ public abstract class GraphPatternRendererVisitor extends IndentedRendererVisito
}
+ private static String cleanQuery(String query, String serviceName){
+ if(serviceName == null || serviceName == "" ){
+ return query.replaceAll(FEDERATED_SERVICE_INTRODUCTION, "").replaceAll(FEDERATED_SERVICE_FINALIZATION, "");
+ }else{
+ return query.replaceAll(FEDERATED_SERVICE_INTRODUCTION, String.format("\nSERVICE <%s> {", serviceName)).replaceAll(FEDERATED_SERVICE_FINALIZATION, "}\n");
+ }
+ }
+
public void saveQuery(Object referer, String query) {
//Query is stored in memory
if(!queries.containsKey(referer)){
queries.put(referer, new LinkedList());
}
queries.get(referer).add(query);
-
+ query = cleanQuery(query, null);
if (split) {
BufferedWriter out = null;
try {
@@ -263,8 +273,18 @@ public abstract class GraphPatternRendererVisitor extends IndentedRendererVisito
}
}
+ /**
+ * Produce Query only for local call.
+ * @param referer
+ * @param index
+ * @return
+ */
public String getQuery(Object referer, int index){
- return queries.get(referer).get(index);
+ return getQuery(referer, index, null);
+ }
+
+ public String getQuery(Object referer, int index, URI remoteURI){
+ return cleanQuery(queries.get(referer).get(index), (remoteURI == null ? null : remoteURI.toString()));
}
protected String createPrefixList() {
diff --git a/src/fr/inrialpes/exmo/align/impl/renderer/SPARQLConstructRendererVisitor.java b/src/fr/inrialpes/exmo/align/impl/renderer/SPARQLConstructRendererVisitor.java
index c78c648f..29b724a7 100644
--- a/src/fr/inrialpes/exmo/align/impl/renderer/SPARQLConstructRendererVisitor.java
+++ b/src/fr/inrialpes/exmo/align/impl/renderer/SPARQLConstructRendererVisitor.java
@@ -181,7 +181,7 @@ public class SPARQLConstructRendererVisitor extends GraphPatternRendererVisitor
}
protected String createConstruct(String GP1, String GP2) {
- return createPrefixList() + "CONSTRUCT {" + NL + GP1 + "}" + NL + "WHERE {" + NL + GP2 + "}" + NL;
+ return createPrefixList() + "CONSTRUCT {" + NL + GP1 + "}" + NL + "WHERE {" + FEDERATED_SERVICE_INTRODUCTION + NL + GP2 + FEDERATED_SERVICE_FINALIZATION + "}" + NL;
}
protected String createCoreseQuery(String query) {
diff --git a/test/input/alignment1.rdf b/test/input/alignment1.rdf
index 26e80142..4acb24d0 100644
--- a/test/input/alignment1.rdf
+++ b/test/input/alignment1.rdf
@@ -15,11 +15,11 @@
<time>34</time>
<ns0:ouri2>http://purl.org/ontology/mo/</ns0:ouri2>
<id>http://localhost:8089/alid/1394718240757/976</id>
- <ns0:ouri1>http://exmo.inria.fr/connectors/example_musical_work_desc/</ns0:ouri1>
+ <ns0:ouri1>http://exmo.inrialpes.fr/connectors/example_musical_work_desc/</ns0:ouri1>
<method>fr.inrialpes.exmo.align.impl.method.SubsDistNameAlignment</method>
<onto1>
- <Ontology rdf:about="http://exmo.inria.fr/connectors/example_musical_work_desc/">
- <location>file:///home/nicolas/Bureau/Discotheka/Inria/Mission/tests/musical_work_source_desc.owl</location>
+ <Ontology rdf:about="http://exmo.inrialpes.fr/connectors/example_musical_work_desc/">
+ <location></location>
<formalism>
<Formalism align:name="OWL2.0" align:uri="http://www.w3.org/2002/07/owl#"/>
</formalism>
@@ -27,16 +27,16 @@
</onto1>
<onto2>
<Ontology rdf:about="http://purl.org/ontology/mo/">
- <location>file:///home/nicolas/Bureau/Discotheka/Inria/Mission/tests/musicontology1.2.rdf</location>
+ <location></location>
<formalism>
<Formalism align:name="OWL2.0" align:uri="http://www.w3.org/2002/07/owl#"/>
</formalism>
</Ontology>
</onto2>
<map>
- <Cell rdf:about="http://exmo.inria.fr/connectors#cell_key">
+ <Cell rdf:about="http://exmo.inrialpes.fr/connectors#cell_key">
<entity1>
- <edoal:Property rdf:about="http://exmo.inria.fr/connectors#key" />
+ <edoal:Property rdf:about="http://exmo.inrialpes.fr/connectors#key" />
</entity1>
<entity2>
<edoal:Property>
diff --git a/test/input/alignment2.rdf b/test/input/alignment2.rdf
new file mode 100644
index 00000000..e0686483
--- /dev/null
+++ b/test/input/alignment2.rdf
@@ -0,0 +1,63 @@
+<?xml version='1.0' encoding='utf-8' standalone='no'?>
+<rdf:RDF xmlns='http://knowledgeweb.semanticweb.org/heterogeneity/alignment#'
+ xmlns:rdf='http://www.w3.org/1999/02/22-rdf-syntax-ns#'
+ xmlns:ns0='http://exmo.inrialpes.fr/align/service#'
+ xmlns:xsd='http://www.w3.org/2001/XMLSchema#'
+ xmlns:align='http://knowledgeweb.semanticweb.org/heterogeneity/alignment#'
+ xmlns:edoal='http://ns.inria.org/edoal/1.0/#'>
+ <Alignment rdf:about="http://localhost:8089/alid/1394718240757/976">
+ <xml>yes</xml>
+ <level>2EDOAL</level>
+ <type>?*</type>
+ <pretty>test1</pretty>
+ <ns0:cached>Thu Mar 13 14:44:05 CET 2014</ns0:cached>
+ <ns0:stored>null</ns0:stored>
+ <time>34</time>
+ <ns0:ouri2>http://purl.org/ontology/mo/</ns0:ouri2>
+ <id>http://localhost:8089/alid/1394718240757/976</id>
+ <ns0:ouri1>http://exmo.inrialpes.fr/connectors/example_musical_work_desc/</ns0:ouri1>
+ <method>fr.inrialpes.exmo.align.impl.method.SubsDistNameAlignment</method>
+ <onto1>
+ <Ontology rdf:about="http://exmo.inrialpes.fr/connectors/example_musical_work_desc/">
+ <location>/home/tests/example_musical_work_desc.owl</location>
+ <formalism>
+ <Formalism align:name="OWL2.0" align:uri="http://www.w3.org/2002/07/owl#"/>
+ </formalism>
+ </Ontology>
+ </onto1>
+ <onto2>
+ <Ontology rdf:about="http://purl.org/ontology/mo/">
+ <location>http://purl.org/ontology/mo/</location>
+ <formalism>
+ <Formalism align:name="OWL2.0" align:uri="http://www.w3.org/2002/07/owl#"/>
+ </formalism>
+ </Ontology>
+ </onto2>
+ <map>
+ <Cell rdf:about="http://exmo.inrialpes.fr/connectors#cell1">
+ <entity1>
+ <edoal:Class rdf:about="http://exmo.inrialpes.fr/connectors#RootElement"/>
+ </entity1>
+ <entity2>
+ <edoal:Class rdf:about="http://purl.org/ontology/mo/MusicalWork"/>
+ </entity2>
+ <relation>=</relation>
+ <measure rdf:datatype='http://www.w3.org/2001/XMLSchema#float'>1.0</measure>
+ <linkkey>
+ <Linkkey type="rule">
+ <bindings>
+ <Corresp type="eq">
+ <property1>
+ <edoal:Property rdf:about="http://purl.org/ontology/mo/opus" />
+ </property1>
+ <property2>
+ <edoal:Property rdf:about="http://exmo.inrialpes.fr/connectors#number" />
+ </property2>
+ </Corresp>
+ </bindings>
+ </Linkkey>
+ </linkkey>
+ </Cell>
+ </map>
+ </Alignment>
+</rdf:RDF>
diff --git a/test/src/SPARQLConstructVisitorTest.java b/test/src/SPARQLConstructVisitorTest.java
index b3bf9862..c68bb1ac 100644
--- a/test/src/SPARQLConstructVisitorTest.java
+++ b/test/src/SPARQLConstructVisitorTest.java
@@ -1,5 +1,4 @@
-import fr.inrialpes.exmo.align.impl.ObjectAlignment;
import fr.inrialpes.exmo.align.impl.edoal.ClassId;
import fr.inrialpes.exmo.align.impl.edoal.EDOALAlignment;
import fr.inrialpes.exmo.align.impl.edoal.EDOALCell;
@@ -7,20 +6,15 @@ import fr.inrialpes.exmo.align.impl.edoal.Expression;
import fr.inrialpes.exmo.align.impl.edoal.PropertyId;
import fr.inrialpes.exmo.align.impl.rel.EquivRelation;
import fr.inrialpes.exmo.align.impl.renderer.SPARQLConstructRendererVisitor;
-import fr.inrialpes.exmo.align.parser.AlignmentParser;
-import fr.inrialpes.exmo.align.parser.RDFParser;
-import java.io.FileInputStream;
-import java.io.InputStream;
+import fr.inrialpes.exmo.align.test.Utils;
import java.io.PrintWriter;
import java.io.StringWriter;
import java.net.URI;
import java.util.Enumeration;
import java.util.Properties;
-import org.semanticweb.owl.align.Alignment;
import org.semanticweb.owl.align.Cell;
import org.semanticweb.owl.align.Relation;
import static org.testng.Assert.assertEquals;
-import static org.testng.Assert.assertNotNull;
import org.testng.annotations.BeforeClass;
import org.testng.annotations.Test;
@@ -35,19 +29,6 @@ import org.testng.annotations.Test;
*/
public class SPARQLConstructVisitorTest {
- private Alignment alignment = null;
- private ObjectAlignment oalignment = null;
-
- private static EDOALAlignment loadAlignement(String fileName) throws Exception {
- AlignmentParser aparser = new AlignmentParser(0);
- assertNotNull(aparser);
- aparser.initAlignment(null);
- RDFParser alignmentParser = new RDFParser();
- InputStream alignIn = new FileInputStream("test/input/" + fileName);
- EDOALAlignment loadedAlignment = alignmentParser.parse(alignIn);
- return loadedAlignment;
- }
-
// Read the alignement that will be rendered by everyone
@BeforeClass(groups = {"full", "impl", "raw"})
private void init() throws Exception {
@@ -63,7 +44,7 @@ public class SPARQLConstructVisitorTest {
public void ConstructSimplePropertiesRelation() throws Exception {
EDOALAlignment alignment = new EDOALAlignment();
Relation opusRelation = new EquivRelation();
- Expression opusExpression1 = new PropertyId(new URI("http://exmo.inria.fr/connectors#opus"));
+ Expression opusExpression1 = new PropertyId(new URI("http://exmo.inrialpes.fr/connectors#opus"));
Expression opusExpression2 = new PropertyId(new URI("http://purl.org/ontology/mo/opus"));
EDOALCell opusCell = new EDOALCell("1", opusExpression1, opusExpression2, opusRelation, 1.0);
alignment.addAlignCell(opusCell);
@@ -76,7 +57,7 @@ public class SPARQLConstructVisitorTest {
alignment.render(renderer);
String expectedQuery1 = "PREFIX rdf:<http://www.w3.org/1999/02/22-rdf-syntax-ns#>\n"
- + "PREFIX ns0:<http://exmo.inria.fr/connectors#>\n"
+ + "PREFIX ns0:<http://exmo.inrialpes.fr/connectors#>\n"
+ "PREFIX ns1:<http://purl.org/ontology/mo/>\n"
+ "CONSTRUCT {\n"
+ "?s ns0:opus ?o .\n"
@@ -86,7 +67,7 @@ public class SPARQLConstructVisitorTest {
+ "}\n";
String expectedQuery2 = "PREFIX rdf:<http://www.w3.org/1999/02/22-rdf-syntax-ns#>\n"
- + "PREFIX ns0:<http://exmo.inria.fr/connectors#>\n"
+ + "PREFIX ns0:<http://exmo.inrialpes.fr/connectors#>\n"
+ "PREFIX ns1:<http://purl.org/ontology/mo/>\n"
+ "CONSTRUCT {\n"
+ "?s ns1:opus ?o .\n"
@@ -96,6 +77,37 @@ public class SPARQLConstructVisitorTest {
+ "}\n";
assertEquals(renderer.getQuery(opusCell, 0), expectedQuery1);
assertEquals(renderer.getQuery(opusCell, 1), expectedQuery2);
+
+ //For remote sparql endpoint :
+
+
+ String remoteServiceURIName = "http://example.org/remoteSparql";
+ URI remoteServiceURI = new URI(remoteServiceURIName);
+ expectedQuery1 = String.format("PREFIX rdf:<http://www.w3.org/1999/02/22-rdf-syntax-ns#>\n"
+ + "PREFIX ns0:<http://exmo.inrialpes.fr/connectors#>\n"
+ + "PREFIX ns1:<http://purl.org/ontology/mo/>\n"
+ + "CONSTRUCT {\n"
+ + "?s ns0:opus ?o .\n"
+ + "}\n"
+ + "WHERE {\n"
+ + "SERVICE <%s> {\n"
+ + "?s ns1:opus ?o .\n"
+ + "}\n"
+ + "}\n", remoteServiceURIName);
+
+ expectedQuery2 = String.format("PREFIX rdf:<http://www.w3.org/1999/02/22-rdf-syntax-ns#>\n"
+ + "PREFIX ns0:<http://exmo.inrialpes.fr/connectors#>\n"
+ + "PREFIX ns1:<http://purl.org/ontology/mo/>\n"
+ + "CONSTRUCT {\n"
+ + "?s ns1:opus ?o .\n"
+ + "}\n"
+ + "WHERE {\n"
+ + "SERVICE <%s> {\n"
+ + "?s ns0:opus ?o .\n"
+ + "}\n"
+ + "}\n", remoteServiceURIName);
+ assertEquals(renderer.getQuery(opusCell, 0, remoteServiceURI), expectedQuery1);
+ assertEquals(renderer.getQuery(opusCell, 1, remoteServiceURI), expectedQuery2);
}
/**
@@ -107,7 +119,7 @@ public class SPARQLConstructVisitorTest {
public void ConstructSimpleClassesRelation() throws Exception {
EDOALAlignment alignment = new EDOALAlignment();
Relation classesRelation = new EquivRelation();
- Expression rootElementExpression = new ClassId(new URI("http://exmo.inria.fr/connectors#RootElement"));
+ Expression rootElementExpression = new ClassId(new URI("http://exmo.inrialpes.fr/connectors#RootElement"));
Expression musicalWorkExpression = new ClassId(new URI("http://purl.org/ontology/mo/MusicalWork"));
EDOALCell classCell = new EDOALCell("1", rootElementExpression, musicalWorkExpression, classesRelation, 1.0);
alignment.addAlignCell(classCell);
@@ -120,7 +132,7 @@ public class SPARQLConstructVisitorTest {
alignment.render(renderer);
String expectedQuery1 = "PREFIX rdf:<http://www.w3.org/1999/02/22-rdf-syntax-ns#>\n"
- + "PREFIX ns0:<http://exmo.inria.fr/connectors#>\n"
+ + "PREFIX ns0:<http://exmo.inrialpes.fr/connectors#>\n"
+ "PREFIX ns1:<http://purl.org/ontology/mo/>\n"
+ "CONSTRUCT {\n"
+ "?s rdf:type ns0:RootElement .\n"
@@ -130,7 +142,7 @@ public class SPARQLConstructVisitorTest {
+ "}\n";
String expectedQuery2 = "PREFIX rdf:<http://www.w3.org/1999/02/22-rdf-syntax-ns#>\n"
- + "PREFIX ns0:<http://exmo.inria.fr/connectors#>\n"
+ + "PREFIX ns0:<http://exmo.inrialpes.fr/connectors#>\n"
+ "PREFIX ns1:<http://purl.org/ontology/mo/>\n"
+ "CONSTRUCT {\n"
+ "?s rdf:type ns1:MusicalWork .\n"
@@ -146,7 +158,7 @@ public class SPARQLConstructVisitorTest {
public void ConstructComposePropertyRelation() throws Exception {
String[] alignmentFilesNames = {"alignment1.rdf"};
for (String alignmentFileName : alignmentFilesNames) {
- EDOALAlignment alignment = loadAlignement(alignmentFileName);
+ EDOALAlignment alignment = Utils.loadAlignement(alignmentFileName);
StringWriter stringWriter = new StringWriter();
PrintWriter writer = new PrintWriter(stringWriter);
SPARQLConstructRendererVisitor renderer = new SPARQLConstructRendererVisitor(writer);
@@ -159,7 +171,7 @@ public class SPARQLConstructVisitorTest {
String expectedQuery1 = "PREFIX rdf:<http://www.w3.org/1999/02/22-rdf-syntax-ns#>\n"
+ "PREFIX ns1:<http://purl.org/NET/c4dm/keys.owl#>\n"
- + "PREFIX ns0:<http://exmo.inria.fr/connectors#>\n"
+ + "PREFIX ns0:<http://exmo.inrialpes.fr/connectors#>\n"
+ "PREFIX ns3:<http://www.w3.org/2000/01/rdf-schema#>\n"
+ "PREFIX ns2:<http://purl.org/ontology/mo/>\n"
+ "CONSTRUCT {\n"
@@ -173,7 +185,7 @@ public class SPARQLConstructVisitorTest {
String expectedQuery2 = "PREFIX rdf:<http://www.w3.org/1999/02/22-rdf-syntax-ns#>\n"
+ "PREFIX ns1:<http://purl.org/NET/c4dm/keys.owl#>\n"
- + "PREFIX ns0:<http://exmo.inria.fr/connectors#>\n"
+ + "PREFIX ns0:<http://exmo.inrialpes.fr/connectors#>\n"
+ "PREFIX ns3:<http://www.w3.org/2000/01/rdf-schema#>\n"
+ "PREFIX ns2:<http://purl.org/ontology/mo/>\n"
+ "CONSTRUCT {\n"
diff --git a/test/src/SPARQLSelectRendererVisitorTest.java b/test/src/SPARQLSelectRendererVisitorTest.java
new file mode 100644
index 00000000..afee166b
--- /dev/null
+++ b/test/src/SPARQLSelectRendererVisitorTest.java
@@ -0,0 +1,70 @@
+
+import fr.inrialpes.exmo.align.impl.edoal.EDOALAlignment;
+import fr.inrialpes.exmo.align.impl.renderer.SPARQLSelectRendererVisitor;
+import fr.inrialpes.exmo.align.test.Utils;
+import java.io.PrintWriter;
+import java.io.StringWriter;
+import java.net.URI;
+import java.util.Enumeration;
+import java.util.Properties;
+import org.semanticweb.owl.align.Cell;
+import static org.testng.Assert.assertEquals;
+import static org.testng.Assert.fail;
+import org.testng.annotations.Test;
+
+/**
+ *
+ * @author Nicolas Guillouet <nicolas.guillouet@inria.fr>
+ */
+public class SPARQLSelectRendererVisitorTest {
+
+ @Test(groups = {"full", "impl", "raw"})
+ public void QueryFromSimpleLinkkey() throws Exception {
+ String alignmentFileName = "alignment2.rdf";
+ EDOALAlignment alignment = Utils.loadAlignement(alignmentFileName);
+ StringWriter stringWriter = new StringWriter();
+ PrintWriter writer = new PrintWriter(stringWriter);
+ SPARQLSelectRendererVisitor renderer = new SPARQLSelectRendererVisitor(writer);
+ Properties properties = new Properties();
+ renderer.init(properties);
+ alignment.render(renderer);
+ assertEquals(alignment.nbCells(), 1);
+ Enumeration<Cell> cells = alignment.getElements();
+ Cell cell = cells.nextElement();
+ URI remoteURI = new URI("http://example.org/data.rdf");
+ String expectedQuery1 = "PREFIX rdf:<http://www.w3.org/1999/02/22-rdf-syntax-ns#>\n"
+ + "PREFIX ns0:<http://exmo.inria.fr/connectors#>\n"
+ + "PREFIX ns1:<http://purl.org/ontology/mo/>\n"
+ + "CONSTRUCT ?s1 ?s2"
+ + "WHERE {\n"
+ + "?s1 rdf:type ns0:RootElement .\n"
+ + "?s1 ns0:number ?o1 ."
+ + "SERVICE <http://example.org/data.rdf> {"
+ + "?s2 rdf:type ns1:MusicalWork . \n"
+ + "?s2 ns1:opus ?o1"
+ + "}\n"
+ + "}\n";
+
+ String expectedQuery2 = "PREFIX rdf:<http://www.w3.org/1999/02/22-rdf-syntax-ns#>\n"
+ + "PREFIX ns0:<http://exmo.inria.fr/connectors#>\n"
+ + "PREFIX ns1:<http://purl.org/ontology/mo/>\n"
+ + "CONSTRUCT ?s1 ?s2"
+ + "WHERE {\n"
+ + "?s2 rdf:type ns1:MusicalWork . \n"
+ + "?s2 ns1:opus ?o1"
+ + "SERVICE <http://example.org/data.rdf> {"
+ + "?s1 rdf:type ns0:RootElement .\n"
+ + "?s1 ns0:number ?o1 ."
+ + "}\n"
+ + "}\n";
+ assertEquals(renderer.getQuery(cell, 0, remoteURI), expectedQuery1, "FOR alignment file " + alignmentFileName);
+ assertEquals(renderer.getQuery(cell, 1, remoteURI), expectedQuery2, "FOR alignment file " + alignmentFileName);
+ fail("HAVE TODO");
+ }
+
+ @Test(groups = {"full", "impl", "raw"})
+ public void HaveTodo() throws Exception {
+ fail("HAVE TODO : with (in + eq) => OPTIONAL (with SERVICE call on remote) / many correspondances / With transformations / On local (FROM ...) or remote sparql endpoint (SERVICE) ");
+ }
+
+}
--
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