diff --git a/plugins/neon/src/fr/inrialpes/exmo/align/plugin/neontk/AlignFormSectionFactory.java b/plugins/neon/src/fr/inrialpes/exmo/align/plugin/neontk/AlignFormSectionFactory.java
index 2d8e7fb65b3aefa9c0ecb6e77bdc372eb1d00f86..dea47e42ff35967a1804ef3d7d430757ee5f2487 100644
--- a/plugins/neon/src/fr/inrialpes/exmo/align/plugin/neontk/AlignFormSectionFactory.java
+++ b/plugins/neon/src/fr/inrialpes/exmo/align/plugin/neontk/AlignFormSectionFactory.java
@@ -46,6 +46,7 @@ public class AlignFormSectionFactory {
SWT.WRAP );
section.setText( sectionTitle );
section.setDescription( sectionDescription );
+
toolkit.createCompositeSeparator( section );
section.setLayout( AlignFormLayoutFactory.createClearTableWrapLayout( false, 1 ) );
TableWrapData data = new TableWrapData( TableWrapData.FILL_GRAB );
@@ -67,7 +68,7 @@ public class AlignFormSectionFactory {
ExpandableComposite.TWISTIE |
SWT.WRAP );
section.setText(sectionTitle);
-
+
Composite client = toolkit.createComposite( section );
section.setClient( client );
diff --git a/plugins/neon/src/fr/inrialpes/exmo/align/plugin/neontk/AlignView.java b/plugins/neon/src/fr/inrialpes/exmo/align/plugin/neontk/AlignView.java
index ba597b000f3fd3153eba57c6b38a31336cb54333..2dc5aec0ab46c88805afd56ba40403b454b9958b 100755
--- a/plugins/neon/src/fr/inrialpes/exmo/align/plugin/neontk/AlignView.java
+++ b/plugins/neon/src/fr/inrialpes/exmo/align/plugin/neontk/AlignView.java
@@ -26,10 +26,15 @@ import java.awt.Component;
import java.awt.Container;
import java.awt.Dimension;
import java.awt.GridLayout;
+import java.awt.Point;
import java.io.File;
+import java.io.FileWriter;
+import java.io.PrintWriter;
+import java.io.StringWriter;
import java.net.URI;
import java.util.HashMap;
import java.util.Hashtable;
+import java.util.Properties;
import java.util.Set;
import java.util.Vector;
@@ -50,6 +55,7 @@ import org.eclipse.swt.widgets.Label;
import org.eclipse.swt.browser.Browser;
import org.eclipse.swt.layout.GridData;
import org.eclipse.swt.layout.FillLayout;
+import org.eclipse.swt.layout.RowLayout;
import org.eclipse.ui.forms.widgets.FormToolkit;
import org.eclipse.ui.forms.widgets.ScrolledForm;
import org.eclipse.ui.forms.widgets.ScrolledFormText;
@@ -64,10 +70,21 @@ import org.eclipse.jface.dialogs.MessageDialog;
//import org.eclipse.jface.dialogs.MessageDialog;
import org.semanticweb.kaon2.api.OntologyManager;
import org.semanticweb.owl.align.Alignment;
+import org.semanticweb.owl.align.AlignmentVisitor;
+import com.ontoprise.config.IConfig;
import com.ontoprise.ontostudio.datamodel.DatamodelPlugin;
+import com.ontoprise.ontostudio.datamodel.DatamodelTypes;
+import com.ontoprise.ontostudio.datamodel.exception.ControlException;
+import com.ontoprise.ontostudio.gui.commands.project.CreateProject;
+import com.ontoprise.ontostudio.io.ImportExportControl;
+import fr.inrialpes.exmo.align.impl.ObjectAlignment;
+import fr.inrialpes.exmo.align.impl.URIAlignment;
+import fr.inrialpes.exmo.align.impl.renderer.HTMLRendererVisitor;
+import fr.inrialpes.exmo.align.impl.renderer.OWLAxiomsRendererVisitor;
import fr.inrialpes.exmo.align.onto.owlapi10.OWLAPIOntologyFactory;
+import fr.inrialpes.exmo.align.parser.AlignmentParser;
import fr.inrialpes.exmo.align.plugin.neontk.AlignFormLayoutFactory;
import fr.inrialpes.exmo.align.plugin.neontk.AlignFormSectionFactory;
import fr.inrialpes.exmo.align.plugin.neontk.OnlineAlign;
@@ -87,7 +104,7 @@ public class AlignView extends ViewPart
private Button cancelButton, discardButton, resButton, onto1Refresh, onto2Refresh,
localImportButton, serverImportButton, uploadButton,
localTrimButton, serverTrimButton, connButton, goButton, offlineButton, onlineButton;
- private Button storeButton, matchButton, findButton, findAllButton, fetchButton;
+ private Button storeButton, matchButton, findButton, findAllButton;// fetchButton;
//private String selectedProject = null;
//private Section ontoSelectSection;
//private Section alignViewSection;
@@ -95,9 +112,11 @@ public class AlignView extends ViewPart
private String selectedOnto1, selectedOnto2, selectedLocalAlign, selectedServerAlign;
private String[] ontoList = new String[0];
private String[] methodList = new String[0];
- public HashMap<String,String> ontoByProj = new HashMap<String,String>(0);
- //String selectedLocalAlign = null;
- //String selectedAlign = null;
+ public HashMap<String,String> ontoByProj = new HashMap<String,String>(0);
+
+ private Composite htmlClient = null;
+ private Browser htmlBrowser = null;
+ private FormToolkit formToolkit = null;
public static Hashtable<String,Alignment> alignmentTable = new Hashtable<String,Alignment>();
static String [] forUniqueness = new String[0];
@@ -115,7 +134,7 @@ public class AlignView extends ViewPart
String selectedMethod = "fr.inrialpes.exmo.align.impl.method.NameEqAlignment";
String wserver = "http://kameleon.ijs.si/ontolight/ontolight.asmx";
- String wsmethod="";
+ String wsmethod= "";
String alignProject = "AlignmentProject";
@@ -128,7 +147,8 @@ public class AlignView extends ViewPart
@Override
public void createPartControl(final Composite parent) {
- FormToolkit formToolkit = new FormToolkit(Display.getCurrent());
+ //FormToolkit formToolkit = new FormToolkit(Display.getCurrent());
+ formToolkit = new FormToolkit(Display.getCurrent());
ScrolledForm scrolledForm = formToolkit.createScrolledForm(parent);
Composite body = scrolledForm.getBody();
body.setLayout(AlignFormLayoutFactory.createFormTableWrapLayout(false,1));
@@ -165,7 +185,7 @@ public class AlignView extends ViewPart
String sectionTitle = "Input";
Composite client ;
- int columns = 6;
+ int columns = 5;
int textWidth = 600;
int textHeight = 20;
GridData gd = new GridData();
@@ -192,12 +212,12 @@ public class AlignView extends ViewPart
Label dummy1 = new Label(client, SWT.NONE);
Label dummy2 = new Label(client, SWT.NONE);
Label dummy3 = new Label(client, SWT.NONE);
- Label dummy4 = new Label(client, SWT.NONE);
+ //Label dummy4 = new Label(client, SWT.NONE);
// Choose ontology 1
Label onto1 = new Label(client, SWT.NONE);
onto1.setText("Ontology 1 ");
- ontoBox1 = new Combo(client, SWT.DROP_DOWN | SWT.READ_ONLY );
+ ontoBox1 = new Combo(client, SWT.DROP_DOWN );
ontoBox1.setLayoutData( gd );
ontoBox1.setEnabled(true);
ontoBox1.addSelectionListener(this);
@@ -208,14 +228,15 @@ public class AlignView extends ViewPart
onto1Refresh.setEnabled(true);
Label dummy5 = new Label(client, SWT.NONE);
Label dummy6 = new Label(client, SWT.NONE);
- Label dummy7 = new Label(client, SWT.NONE);
+ //Label dummy7 = new Label(client, SWT.NONE);
//Choose ontology 2
Label onto2 = new Label(client, SWT.NONE);
onto2.setText("Ontology 2 ");
- ontoBox2 = new Combo(client, SWT.DROP_DOWN | SWT.READ_ONLY );
+ ontoBox2 = new Combo(client, SWT.DROP_DOWN );
ontoBox2.setLayoutData(gd);
ontoBox2.setEnabled(true);
+
ontoBox2.addSelectionListener(this);
onto2Refresh = new Button(client, SWT.PUSH);
onto2Refresh.setText("Refresh");
@@ -224,7 +245,7 @@ public class AlignView extends ViewPart
onto2Refresh.setEnabled(true);
Label dummy8 = new Label(client, SWT.NONE);
Label dummy9 = new Label(client, SWT.NONE);
- Label dummy10 = new Label(client, SWT.NONE);
+ //Label dummy10 = new Label(client, SWT.NONE);
//methods
Label methodLabel = new Label(client, SWT.NONE);
@@ -243,7 +264,7 @@ public class AlignView extends ViewPart
Label dummy11 = new Label(client, SWT.NONE);
Label dummy12 = new Label(client, SWT.NONE);
- Label dummy13 = new Label(client, SWT.NONE);
+ //Label dummy13 = new Label(client, SWT.NONE);
//server alignment list
Label serverAlignLabel = new Label(client, SWT.NONE );
@@ -277,11 +298,11 @@ public class AlignView extends ViewPart
storeButton.setEnabled(false);
//fetch
- fetchButton = new Button(client, SWT.PUSH);
- fetchButton.setText("Fetch");
- fetchButton.setSize(buttonWidth, buttonHeight);
- fetchButton.addSelectionListener(this);
- fetchButton.setEnabled(false);
+ //fetchButton = new Button(client, SWT.PUSH);
+ //fetchButton.setText("Fetch");
+ //fetchButton.setSize(buttonWidth, buttonHeight);
+ //fetchButton.addSelectionListener(this);
+ //fetchButton.setEnabled(false);
//local alignment list
Label localAlignLabel = new Label(client, SWT.NONE );
@@ -313,14 +334,14 @@ public class AlignView extends ViewPart
uploadButton.addSelectionListener(this);
uploadButton.setEnabled(false);
- Label dummy14 = new Label(client, SWT.NONE);
+ //Label dummy14 = new Label(client, SWT.NONE);
Label dummy15 = new Label(client, SWT.NONE);
Label dummy16 = new Label(client, SWT.NONE);
Label dummy17 = new Label(client, SWT.NONE);
Label dummy18 = new Label(client, SWT.NONE);
Label dummy19 = new Label(client, SWT.NONE);
- Label dummy20 = new Label(client, SWT.NONE);
+ //Label dummy20 = new Label(client, SWT.NONE);
Label dummy21 = new Label(client, SWT.NONE);
@@ -334,7 +355,7 @@ public class AlignView extends ViewPart
Label dummy22 = new Label(client, SWT.NONE);
Label dummy23 = new Label(client, SWT.NONE);
Label dummy24 = new Label(client, SWT.NONE);
- Label dummy25 = new Label(client, SWT.NONE);
+ //Label dummy25 = new Label(client, SWT.NONE);
Label dummy26 = new Label(client, SWT.NONE);
//find all
@@ -350,34 +371,32 @@ public class AlignView extends ViewPart
private void createAlignmentPart(final Composite parent,
final FormToolkit toolkit){
+
String sectionTitle = "View Alignment";
-
- //int columns = 1;
- //int textWidth = 800;
- //int textHeight = 20;
- //FillLayout fl = new FillLayout();
- //Composite client = new ScrolledFormText( parent, true );
- //fl.widthHint = textWidth;
- //fl.heightHint = textHeight;
- //String tx = "<html><body>This is Unicode HTML content from memory</body></html>";
- Composite client = AlignFormSectionFactory.createHtmlSection(
- toolkit, parent, sectionTitle);
- //client = AlignFormSectionFactory.createGridExpandableSection(
- //toolkit, parent, sectionTitle, columns, true);
- //alignViewSection = AlignFormSectionFactory.getGridExpendableSection();
- //alignViewSection = AlignFormSectionFactory.getSimpleSection();
- //alignViewSection.setExpanded( true );
-
- //Composite client = new ScrolledFormText( parent, true );
-
- client.setLayout(new FillLayout());
- client.setSize(960, 720);
- client.setLocation(0, 0);
-
- Browser browser = new Browser(client, SWT.BORDER);
- browser.setText("<html><body>This is Unicode HTML content from memory</body></html>");
-
- toolkit.paintBordersFor(client);
+ //Composite client = AlignFormSectionFactory.createHtmlSection(
+ // toolkit, parent, sectionTitle);
+ htmlClient = AlignFormSectionFactory.createHtmlSection(
+ toolkit, parent, sectionTitle);
+
+ htmlClient.setSize(450, 100);
+
+ FillLayout fillLayout = new FillLayout(SWT.VERTICAL);
+
+ htmlClient.setLayout( fillLayout );
+
+ htmlClient.setLocation(0, 0);
+
+
+ htmlBrowser = new Browser(htmlClient, SWT.BORDER );
+
+ toolkit.paintBordersFor(htmlClient);
+ }
+
+ public void viewHTMLAlign(String html, final FormToolkit toolkit) {
+ htmlBrowser.setText("");
+ toolkit.paintBordersFor(htmlClient);
+ htmlBrowser.setText(html);
+ toolkit.paintBordersFor(htmlClient);
}
public void handleEvent(Event e) {
@@ -389,6 +408,7 @@ public class AlignView extends ViewPart
//this.onlineButton.setExpanded(true);
OnlineDialog onDialog = new OnlineDialog( getSite().getShell() );
onDialog.setInput("aserv.inrialpes.fr");
+ onDialog.setMessage("URL for alignment server:");
onDialog.open();
if ( !(onDialog.getInput() == null) && !onDialog.getInput().equals("")) {
online = true;
@@ -401,74 +421,132 @@ public class AlignView extends ViewPart
"Impossible connection!");
return;
}
- if(localAlignBox.getItems()==null || localAlignBox.getItems().length ==0) {
- setButtons( 3 ); //no localList, no server list
-
+ onlineButton.setEnabled( false );
+ offlineButton.setEnabled( true );
+ findButton.setEnabled(true);
+ findAllButton.setEnabled(true);
+ serverAlignBox.removeAll();
+ serverAlignBox.setEnabled( false );
+ serverImportButton.setEnabled( false );
+ serverTrimButton.setEnabled( false );
+ storeButton.setEnabled( false );
+ //fetchButton.setEnabled( false );
+
+ if(localAlignBox.getItems().length == 0) {
+ localAlignBox.setEnabled( false );
+ localImportButton.setEnabled( false );
+ localTrimButton.setEnabled( false );
+ uploadButton.setEnabled( false );
+ selectedLocalAlign = null;
+ //setButtons( 3 ); //no localList, no server list
} else {
- setButtons( 6 ); //with localList, no server list
+ localAlignBox.setEnabled( true );
+ localImportButton.setEnabled( true );
+ localTrimButton.setEnabled( true );
+ uploadButton.setEnabled( true );
+
}
selectedOnto1 = null;
selectedOnto2 = null;
selectedServerAlign = null;
- selectedLocalAlign = null;
methods.removeAll();
selectedMethod = list[0];
methods.setItems( list );
methods.select(0);
methods.redraw();
+ ontoByProj = this.refreshOntoList( online );
}
} else if ( e.getSource().equals( this.offlineButton ) ) {
offlineInit( false );
+ } else if (e.getSource() == ontoBox1) {
+ int index = ontoBox1.getSelectionIndex();
+ selectedOnto1 = ontoBox1.getItem(index);
+
+ } else if (e.getSource() == ontoBox2) {
+ int index = ontoBox2.getSelectionIndex();
+ selectedOnto2 = ontoBox2.getItem(index);
+
+ } else if (e.getSource() == methods) {
+ int index = methods.getSelectionIndex();
+ selectedMethod = methods.getItem(index);
} else if (e.getSource() == onto1Refresh) {
ontoByProj = this.refreshOntoList( online );
} else if (e.getSource() == onto2Refresh) {
ontoByProj = this.refreshOntoList( online );
+
+ } else if (e.getSource() == serverAlignBox) {
+ int index = serverAlignBox.getSelectionIndex();
+ selectedServerAlign = serverAlignBox.getItem(index);
+
+ } else if (e.getSource() == localAlignBox) {
+ int index = localAlignBox.getSelectionIndex();
+ selectedLocalAlign = localAlignBox.getItem(index);
+
+ //processing ontology matching
} else if (e.getSource() == matchButton) {
+ selectedOnto1 = ontoBox1.getText();
+ selectedOnto2 = ontoBox2.getText();
+
if (selectedOnto1 == null || selectedOnto2 == null ) {
MessageDialog.openError(this.getSite().getShell(), "Error message",
- "Choose two ontologies from lists! ");
+ "Choose two ontologies from the lists! ");
return;
}
if( online ) {
if (!selectedOnto1.startsWith("http://") || !selectedOnto2.startsWith("http://") ) {
- MessageDialog.openError(this.getSite().getShell(), "Error message", "URLs for ontologies are required.");
+ MessageDialog.openError(this.getSite().getShell(), "Error message", "Ontology URLs are required.");
return;
}
- if( selectedMethod.equals("fr.inrialpes.exmo.align.service.WSAlignment")) {
-
+ if( selectedMethod.equals("fr.inrialpes.exmo.align.service.WSAlignment") ) {
WSDialog pa = new WSDialog( getSite().getShell() );
- if( pa.getServerInput() == null || pa.getServerInput().equals("")) {
- MessageDialog.openError(this.getSite().getShell(), "Error message", "No server!");
+ pa.setServerInput("http://kameleon.ijs.si/ontolight/ontolight.asmx");
+ pa.open();
+
+ if( pa.getServerInput().equals("")) {
+ MessageDialog.openError(this.getSite().getShell(), "Error message", "No available server!");
return;
} else {
wserver = pa.getServerInput();
wsmethod = pa.getMethodInput();
String alignId = onlineAlign.getAlignIdMonoThread( selectedMethod, wserver, wsmethod, selectedOnto1, selectedOnto2 );
- String[] list = new String[1];
- list[0] = alignId;
- selectedServerAlign = alignId;
- serverAlignBox.removeAll();
- serverAlignBox.setItems(list);
+ if( alignId == null || alignId .equals("")) {
+ MessageDialog.openError(this.getSite().getShell(), "Error message", "Alignment is not produced.");
+ return;
+ }
+
+ serverAlignBox.add(alignId, 0);
+ selectedServerAlign = alignId;
+ serverImportButton.setEnabled( true );
+ serverTrimButton.setEnabled( true );
+ storeButton.setEnabled( true );
serverAlignBox.select(0);
serverAlignBox.redraw();
}
} else {
- //resetActionButtons( false );
+
String alignId = onlineAlign.getAlignIdMonoThread( selectedMethod, wserver, wsmethod, selectedOnto1, selectedOnto2 );
+ if( alignId == null || alignId .equals("")) {
+ MessageDialog.openError(this.getSite().getShell(), "Error message", "Alignment is not produced.");
+ return;
+ }
//onAlign.getAlignId( matchMethod, wserver, wsmethod, selectedOnto1, selectedOnto2 );
- String[] list = new String[1];
- list[0] = alignId;
- selectedServerAlign = list[0];
- serverAlignBox.removeAll();
+
+ serverAlignBox.add(alignId, 0);
+ selectedServerAlign = alignId;
+ serverAlignBox.setEnabled( true );
+ serverImportButton.setEnabled( true );
+ serverTrimButton.setEnabled( true );
+ storeButton.setEnabled( true );
+ //fetchButton.setEnabled( true );
+
serverAlignBox.select(0);
serverAlignBox.redraw();
-
}
//String answer = onAlign.getAlignId( matchMethod, selectedOnto1, selectedOnto2 );
@@ -489,19 +567,286 @@ public class AlignView extends ViewPart
String resId = offlineAlign.matchAndExportAlign( selectedMethod, ontoByProj.get(selectedOnto1), selectedOnto1, ontoByProj.get(selectedOnto2), selectedOnto2);
- localAlignBox.removeAll();
- String[] list = new String[1];
+ //localAlignBox.removeAll();
- //File f1 = new File(resId);
- list[0] = resId;//"file:" + f1.getAbsolutePath();
-
- localAlignBox.setItems(list);
- selectedLocalAlign = list[0];
+ localAlignBox.setEnabled( true );
+ localImportButton.setEnabled( true );
+ localTrimButton.setEnabled( true );
+
+ localAlignBox.add(resId, 0);
+ selectedLocalAlign = resId;
localAlignBox.select(0);
localAlignBox.redraw();
-
} //offline
- } else if (e.getSource() == localImportButton) {//matchButton
+ //processing alignment fetching
+ } else if (e.getSource() == storeButton) {
+ if(selectedServerAlign == null) {
+ MessageDialog.openError(this.getSite().getShell(), "Error message", "Choose an alignment ID from the list!");
+ return;
+ }
+
+ String sto = onlineAlign.storeAlign(selectedServerAlign);
+
+ if(sto == null || sto.equals("") ) {
+ MessageDialog.openError(this.getSite().getShell(), "Error message", "Alignment cannot be stored!");
+ return;
+ } else {
+ MessageDialog.openConfirm(this.getSite().getShell(), "Confirmation", "Alignment: "+ selectedServerAlign + "\n is stored!");
+ }
+
+ } else if (e.getSource() == serverTrimButton) {
+
+ if(selectedServerAlign == null) {
+ MessageDialog.openError(this.getSite().getShell(), "Error message", "Choose an alignment ID from the list!");
+ return;
+ }
+
+ OnlineDialog trimDialog = new OnlineDialog( getSite().getShell() );
+ trimDialog.setInput("0.5");
+ trimDialog.setMessage("Threshold:");
+ trimDialog.open();
+ String thres = trimDialog.getInput();
+ if ( trimDialog.getInput() == null) return;
+ if ( trimDialog.getInput().equals("")) {
+ MessageDialog.openError(this.getSite().getShell(), "Error message", "Invalid threshold!");
+ return;
+ }
+
+ String at = onlineAlign.trimAlign(selectedServerAlign, thres);
+ if(at == null) return;
+ if(at.equals("")) {
+ MessageDialog.openError(this.getSite().getShell(), "Error message", "No alignment is obtained!");
+ return;
+ }
+
+ serverAlignBox.add( at, 0 );
+ selectedServerAlign = at;
+ serverAlignBox.select(0);
+ serverAlignBox.redraw();
+
+ } else if (e.getSource() == localTrimButton) {
+ if(selectedLocalAlign == null) {
+ MessageDialog.openError(this.getSite().getShell(), "Error message", "Choose an alignment ID from the list!");
+ return;
+ }
+
+ OnlineDialog trimDialog = new OnlineDialog( getSite().getShell() );
+ trimDialog.setInput("0.5");
+ trimDialog.setMessage("Threshold:");
+ trimDialog.open();
+ String thres = trimDialog.getInput();
+ if ( trimDialog.getInput() == null) return;
+ if ( trimDialog.getInput().equals("")) {
+ MessageDialog.openError(this.getSite().getShell(), "Error message", "Invalid threshold!");
+ return;
+ }
+
+ String resId = offlineAlign.trimAndExportAlign( new Double(thres), selectedLocalAlign );
+
+ localAlignBox.add( resId, 0 );
+ selectedLocalAlign = resId;
+ localAlignBox.select(0);
+ localAlignBox.redraw();
+
+ } else if (e.getSource() == serverImportButton) {
+
+ if(selectedServerAlign == null) {
+ MessageDialog.openError(this.getSite().getShell(), "Error message", "Choose an alignment ID from the list!");
+ return;
+ }
+
+ onlineAlign.getRDFAlignmentMonoThread( selectedServerAlign );
+
+ String inputName = null;
+
+ FileWriter out = null;
+
+ //export to local List
+
+ String rdfalignStr = onlineAlign.getRDFAlignmentParsed( );// selectedAlign , alignImportButton, alignStoreButton,
+ //serverAlignTrimButton, allAlignButton, alignFindButton, mapButton );
+
+ String alignKey = alignFolder.getAbsolutePath() + File.separator + getNewAlignId();
+
+ localAlignBox.add(alignKey, 0);
+ selectedLocalAlign = alignKey;
+ localAlignBox.select(0);
+ localAlignBox.redraw();
+
+ String rdfPath = alignKey + ".rdf";
+
+ URIAlignment align = null;
+ String owlalignStr = null;
+
+ try {
+
+ File rdfFile = new File( rdfPath );
+
+ out = new FileWriter( rdfFile );
+ out.write( rdfalignStr );
+ out.flush();
+ out.close();
+
+ File file = new File(rdfPath);
+
+ AlignmentParser ap = new AlignmentParser(0);
+ ap.setEmbedded( true );
+ align = (URIAlignment)ap.parse(file.toURI().toString());
+
+ AlignView.alignmentTable.put( alignKey , (Alignment)align );
+
+ StringWriter htmlMessage = new StringWriter();
+ AlignmentVisitor htmlV = new HTMLRendererVisitor( new PrintWriter ( htmlMessage ) );
+
+ align.render( htmlV );
+
+ if(htmlMessage.toString()==null || htmlMessage.toString().equals("")) {
+ viewHTMLAlign( "", formToolkit );
+ } else {
+ viewHTMLAlign( htmlMessage.toString(), formToolkit );
+ }
+ //get align from server, then export it as owl onto
+ StringWriter owlMessage = new StringWriter();
+ AlignmentVisitor owlV = new OWLAxiomsRendererVisitor( new PrintWriter ( owlMessage ) );
+ ObjectAlignment al = ObjectAlignment.toObjectAlignment( (URIAlignment)align );
+ //BasicAlignment al = (BasicAlignment)align;
+ al.render( owlV );
+
+ owlalignStr = owlMessage.toString();
+
+ }
+ catch ( Exception ex ) { ex.printStackTrace();};
+
+
+ if(owlalignStr==null) {
+ MessageDialog.openError(this.getSite().getShell(), "Error message", "OWL alignment cannot be imported.");
+ return;
+ }
+
+ try {
+
+ OnlineDialog localImportDialog = new OnlineDialog( getSite().getShell() );
+ localImportDialog.setInput("AlignmentProject");
+ localImportDialog.setMessage("Enter a project name:");
+ localImportDialog.open();
+ inputName = localImportDialog.getInput();
+
+ if (inputName==null || inputName.equals("")) {
+ MessageDialog.openError(this.getSite().getShell(), "Error message", "Project name is not valid!");
+ return;
+ }
+
+ String[] projects = DatamodelPlugin.getDefault().getOntologyProjects();
+ if(projects!=null) {
+ boolean found = false;
+
+ for(int i=0; i < projects.length; i++) {
+
+ if(projects[i].equals(inputName)) {
+ found = true;break;
+ }
+ }
+
+ if(!found) {
+
+ Properties proper = new Properties();
+ proper.put(IConfig.ONTOLOGY_LANGUAGE.toString(), IConfig.OntologyLanguage.OWL.toString());
+ new CreateProject( inputName, DatamodelTypes.RAM, proper ).run();
+ }
+ }
+
+ String owlPath = ontoFolder.getAbsolutePath() + File.separator + getNewAlignId() + ".owl";
+ File owlFile = new File( owlPath );
+ if (owlFile.exists()) owlFile.delete();
+
+ out = new FileWriter( owlFile );
+ out.write( owlalignStr );
+ out.flush();
+ out.close();
+
+ try {
+ ImportExportControl ieControl = new ImportExportControl();
+ URI uris[] = new URI[1];
+ uris[0] = new File( owlPath).toURI();
+ String[] importedModules = ieControl.importFileSystem(inputName, uris, null);
+
+ //ieControl.addOntologies2Project(importedModules, inputName);
+ } catch ( ControlException ex ) { }
+
+ }
+ catch ( Exception ex ) { ex.printStackTrace();}
+
+ } else if (e.getSource() == localImportButton) {
+ if(selectedLocalAlign == null) {
+ MessageDialog.openError(this.getSite().getShell(), "Error message", "Choose an alignment ID from list!");
+ return;
+ }
+
+ File fn = new File(selectedLocalAlign + ".owl");
+
+
+ StringWriter htmlMessage = new StringWriter();
+ AlignmentVisitor htmlV = new HTMLRendererVisitor( new PrintWriter ( htmlMessage ) );
+
+ try {
+ AlignView.alignmentTable.get(selectedLocalAlign).render( htmlV );
+
+ viewHTMLAlign( htmlMessage.toString(), formToolkit );
+
+ String inputName=null;
+ OnlineDialog localImportDialog = new OnlineDialog( getSite().getShell() );
+ localImportDialog.setInput("AlignmentProject");
+ localImportDialog.setMessage("Enter a project name:");
+ localImportDialog.open();
+ inputName = localImportDialog.getInput();
+
+ if (inputName==null || inputName.equals("")) {
+ MessageDialog.openError(this.getSite().getShell(), "Error message", "Project name is not valid!");
+ return;
+ }
+
+ String[] projects = DatamodelPlugin.getDefault().getOntologyProjects();
+
+ if(projects!=null) {
+ boolean found = false;
+
+ for(int i=0; i < projects.length; i++) {
+ if(projects[i].equals(inputName)) {
+ found = true;break;
+ }
+ }
+
+ if(!found) {
+ Properties proper = new Properties();
+ proper.put(IConfig.ONTOLOGY_LANGUAGE.toString(), IConfig.OntologyLanguage.OWL.toString());
+ new CreateProject( inputName, DatamodelTypes.RAM, proper ).run();
+
+ }
+
+ ImportExportControl ieControl = new ImportExportControl();
+ URI uris[] = new URI[1];
+ uris[0] = new File(fn.getAbsolutePath()).toURI();
+ ieControl.importFileSystem(inputName, uris, null);
+
+ }
+ }
+ catch ( Exception ex ) { ex.printStackTrace();};
+
+ } else if (e.getSource() == uploadButton) {
+ if(selectedLocalAlign == null) {
+ MessageDialog.openError(this.getSite().getShell(), "Error message", "Choose an alignment ID from the list!");
+ return;
+ }
+ String uploadedId = null;
+ try {
+ uploadedId = onlineAlign.uploadAlign(selectedLocalAlign + ".rdf");
+ if(uploadedId == null) {
+ MessageDialog.openError(this.getSite().getShell(), "Error message", "Alignment cannot be uploaded!");
+ return;
+ }
+
+ MessageDialog.openConfirm(this.getSite().getShell(), "Confirmation", "Alignment is uploaded with ID: \n" + uploadedId);
+ } catch ( Exception ex ) { ex.printStackTrace();}
} else if ( e.getSource().equals( this.findAllButton ) ) {
@@ -522,7 +867,7 @@ public class AlignView extends ViewPart
serverAlignBox.redraw();
offList = offlineAlign.getAllAlign( );
- if( offList != null && offList.length > 0 ) {
+ if( offList.length > 0 ) {
//localAlignBox.setEnabled( true );
localAlignBox.removeAll();
localAlignBox.setItems( offList );
@@ -530,24 +875,28 @@ public class AlignView extends ViewPart
localAlignBox.select(0);
localAlignBox.redraw();
}
+ }
+
+ if(onList.length > 0 ) {
+ serverAlignBox.setEnabled( true );
+ serverImportButton.setEnabled( true );
+ serverTrimButton.setEnabled( true );
+ storeButton.setEnabled( true );
+ //fetchButton.setEnabled( true );
}
-
- if( onList.length > 0 && (offList.length > 0) ) {
- setButtons( 7 );
- }
- else if( onList.length == 0 && offList.length > 0 )
- setButtons( 6 );
- else if( onList.length == 0 && offList.length == 0 )
- setButtons( 3 );
- else if( onList.length >0 && offList.length == 0 ) {
- //System.out.println("OK ");
- setButtons( 8 );
+ if(offList.length > 0 ) {
+ uploadButton.setEnabled( true );
+ localAlignBox.setEnabled( true );
+ localImportButton.setEnabled( true );
+ localTrimButton.setEnabled( true );
}
} else if ( e.getSource().equals( this.findButton ) ) {
String[] onList = null;
+ selectedOnto1 = ontoBox1.getText();
+ selectedOnto2 = ontoBox2.getText();
if(online) {
if(selectedOnto1 == null || selectedOnto1.equals("") || selectedOnto2 == null || selectedOnto2.equals("")) {
- MessageDialog.openError(this.getSite().getShell(), "Error message", "Please choose ontologies.");
+ MessageDialog.openError(this.getSite().getShell(), "Error message", "Choose two ontologies from the lists!");
return;
}
onList = onlineAlign.findAlignForOntos( selectedOnto1, selectedOnto2);
@@ -555,16 +904,50 @@ public class AlignView extends ViewPart
MessageDialog.openError(this.getSite().getShell(), "Error message", "No available alignment.");
return;
}
- serverAlignBox.setEnabled( true );
serverAlignBox.removeAll();
- serverAlignBox.setItems(onList);
- selectedServerAlign = onList[0];
- serverAlignBox.select(0);
+
+ if(onList.length > 0) {
+ serverAlignBox.setEnabled( true );
+ serverAlignBox.setItems(onList);
+ selectedServerAlign = onList[0];
+ serverImportButton.setEnabled( true );
+ serverTrimButton.setEnabled( true );
+ storeButton.setEnabled( true );
+ //fetchButton.setEnabled( true );
+ serverAlignBox.select(0);
+ } else {
+ selectedServerAlign = null;
+ serverAlignBox.setEnabled( false );
+ serverImportButton.setEnabled( false );
+ serverTrimButton.setEnabled( false );
+ storeButton.setEnabled( false );
+ //fetchButton.setEnabled( false );
+ }
serverAlignBox.redraw();
}
}
}
+ public static int getNewAlignId() {
+
+ boolean found = false;
+ alignId++;
+ while(!found) {
+
+ boolean sw = false;
+ for(int i=0;i< forUniqueness.length; i++)
+ if(forUniqueness[i].equals((new Integer(alignId)).toString())) {
+ alignId++;
+ sw = true;
+ break;
+ }
+
+ if( !sw ) found = true;
+
+ }
+
+ return alignId;
+ }
void offlineInit(boolean init) {
online = false;
@@ -594,10 +977,11 @@ public class AlignView extends ViewPart
selectedMethod = methodList[0];
methods.removeAll();
methods.setItems( methodList );
+ methods.setEnabled(true);
methods.select(0);
methods.redraw();
- System.out.println( "alignFolder=" + alignFolder );
+ //System.out.println( "alignFolder=" + alignFolder );
offlineAlign = new OfflineAlign( alignFolder, ontoFolder );
@@ -609,28 +993,19 @@ public class AlignView extends ViewPart
String[] list = offlineAlign.getAllAlign();
localAlignBox.removeAll();
- if(list != null && list.length > 0) {
+ if( list.length > 0) {
+
forUniqueness = new String[list.length];
for(int i=0; i< list.length; i++){
- System.out.println( "filename=" + list[i] );
+ //System.out.println( "filename=" + list[i] );
File f = new File(list[i]);
forUniqueness[i] = f.getName();
}
localAlignBox.setItems( list );
selectedLocalAlign = list[0];
- setButtons( 1 );
+ localAlignBox.select(0);
- } else {
- setButtons( 0 );
- }
- }
-
- void setButtons( int status ) {
- switch (status) {
- case 0 : // activate offline no localList
- onlineButton.setEnabled( true );
- offlineButton.setEnabled( false );
findButton.setEnabled(false);
findAllButton.setEnabled(false);
@@ -638,17 +1013,16 @@ public class AlignView extends ViewPart
serverImportButton.setEnabled( false );
serverTrimButton.setEnabled( false );
storeButton.setEnabled( false );
- fetchButton.setEnabled( false );
+ //fetchButton.setEnabled( false );
uploadButton.setEnabled( false );
- localAlignBox.setEnabled( false );
- localImportButton.setEnabled( false );
- localTrimButton.setEnabled( false );
- break;
+ localAlignBox.setEnabled( true );
+ localImportButton.setEnabled( true );
+ localTrimButton.setEnabled( true );
- case 1 : // activate offline with localList
- onlineButton.setEnabled( true );
- offlineButton.setEnabled( false );
+ } else {
+ //setButtons( 0 );
+ selectedLocalAlign = null;
findButton.setEnabled(false);
findAllButton.setEnabled(false);
@@ -656,149 +1030,28 @@ public class AlignView extends ViewPart
serverImportButton.setEnabled( false );
serverTrimButton.setEnabled( false );
storeButton.setEnabled( false );
- fetchButton.setEnabled( false );
+ //fetchButton.setEnabled( false );
uploadButton.setEnabled( false );
- localAlignBox.setEnabled( true );
- localImportButton.setEnabled( true );
- localTrimButton.setEnabled( true );
- break;
-
- case 2 : // activate online no list
- onlineButton.setEnabled( false );
- offlineButton.setEnabled( true );
- findButton.setEnabled(true);
- findAllButton.setEnabled(true);
-
- serverAlignBox.setEnabled( false );
- serverImportButton.setEnabled( false );
- serverTrimButton.setEnabled( false );
- storeButton.setEnabled( false );
- fetchButton.setEnabled( false );
- uploadButton.setEnabled( false );
-
-
- localAlignBox.setEnabled( false );
- localImportButton.setEnabled( false );
- localTrimButton.setEnabled( false );
- break;
-
- case 3 : // activate online no localList (no server List)
- onlineButton.setEnabled( false );
- offlineButton.setEnabled( true );
- findButton.setEnabled(true);
- findAllButton.setEnabled(true);
-
- serverAlignBox.setEnabled( false );
- serverImportButton.setEnabled( false );
- serverTrimButton.setEnabled( false );
- storeButton.setEnabled( false );
- fetchButton.setEnabled( false );
- uploadButton.setEnabled( false );
-
-
- localAlignBox.setEnabled( false );
- localImportButton.setEnabled( false );
- localTrimButton.setEnabled( false );
- break;
-
- case 4 : // activate online align. not available
- onlineButton.setEnabled( false );
- offlineButton.setEnabled( true );
- findButton.setEnabled(true);
- findAllButton.setEnabled(true);
-
- serverAlignBox.setEnabled( true );
- serverImportButton.setEnabled( true );
- serverTrimButton.setEnabled( false );
- storeButton.setEnabled( false );
- fetchButton.setEnabled( true );
- uploadButton.setEnabled( true );
-
-
- localAlignBox.setEnabled( true );
- localImportButton.setEnabled( true );
- localTrimButton.setEnabled( true );
- break;
-
- case 5 : // activate online align available
- onlineButton.setEnabled( false );
- offlineButton.setEnabled( true );
- findButton.setEnabled(true);
- findAllButton.setEnabled(true);
-
- serverAlignBox.setEnabled( true );
- serverImportButton.setEnabled( true );
- serverTrimButton.setEnabled( true );
- storeButton.setEnabled( true );
- fetchButton.setEnabled( true );
- uploadButton.setEnabled( true );
-
-
- localAlignBox.setEnabled( true );
- localImportButton.setEnabled( true );
- localTrimButton.setEnabled( true );
- break;
-
- case 6 : // activate online with localList (no serverList)
- onlineButton.setEnabled( false );
- offlineButton.setEnabled( true );
- findButton.setEnabled( true );
- findAllButton.setEnabled( true );
-
- serverAlignBox.setEnabled( false );
- serverImportButton.setEnabled( false );
- serverTrimButton.setEnabled( false );
- storeButton.setEnabled( false );
- fetchButton.setEnabled( false );
- uploadButton.setEnabled( true );
-
- localAlignBox.setEnabled( true );
- localImportButton.setEnabled( true );
- localTrimButton.setEnabled( true );
- break;
-
- case 7 : // activate online with both Lists
- onlineButton.setEnabled( false );
- offlineButton.setEnabled( true );
- findButton.setEnabled( true );
- findAllButton.setEnabled( true );
-
- serverAlignBox.setEnabled( true );
- serverImportButton.setEnabled( false );
- serverTrimButton.setEnabled( false );
- storeButton.setEnabled( false );
- fetchButton.setEnabled( true );
- uploadButton.setEnabled( true );
-
- localAlignBox.setEnabled( true );
- localImportButton.setEnabled( true );
- localTrimButton.setEnabled( true );
- break;
-
- case 8 : // activate online with server list but no local list
- onlineButton.setEnabled( false );
- offlineButton.setEnabled( true );
- findButton.setEnabled( true );
- findAllButton.setEnabled( true );
-
- serverAlignBox.setEnabled( true );
- serverImportButton.setEnabled( false );
- serverTrimButton.setEnabled( false );
- storeButton.setEnabled( false );
- fetchButton.setEnabled( true );
- uploadButton.setEnabled( true );
-
- localAlignBox.setEnabled( false );
- localImportButton.setEnabled( false );
- localTrimButton.setEnabled( false );
- break;
- default:
- break;
+ localAlignBox.setEnabled( false );
+ localImportButton.setEnabled( false );
+ localTrimButton.setEnabled( false );
}
+ ontoBox1.setEnabled(true);
+ ontoBox1.redraw();
+ onto1Refresh.setEnabled(true);
+ //onto1Refresh.redraw();
+ ontoBox2.setEnabled(true);
+ ontoBox2.redraw();
+ onto2Refresh.setEnabled(true);
+ onlineButton.setEnabled( true );
+ offlineButton.setEnabled( false );
+ //onto2Refresh.redraw();
+ localAlignBox.redraw();
+ ontoByProj = this.refreshOntoList( online );
+
}
-
-
+
private HashMap<String,String> refreshOntoList(boolean online) {
HashMap<String,String> vec = new HashMap<String,String>();
OWLAPIOntologyFactory fact = new OWLAPIOntologyFactory();
diff --git a/plugins/neon/src/fr/inrialpes/exmo/align/plugin/neontk/OfflineAlign.java b/plugins/neon/src/fr/inrialpes/exmo/align/plugin/neontk/OfflineAlign.java
index ffce916415be7783d3b7e9430019b156dda94a45..28ac1b23f7c6f9c1a26538a2a90ee1d1020d81b7 100755
--- a/plugins/neon/src/fr/inrialpes/exmo/align/plugin/neontk/OfflineAlign.java
+++ b/plugins/neon/src/fr/inrialpes/exmo/align/plugin/neontk/OfflineAlign.java
@@ -66,8 +66,8 @@ public class OfflineAlign {
//export ontologies
ImportExportControl ieControl = new ImportExportControl();
- //Integer name1 = new Integer(SWTInterface.alignId++);
- //Integer name2 = new Integer(SWTInterface.alignId++);
+ //Integer name1 = new Integer(AlignView.alignId++);
+ //Integer name2 = new Integer(AlignView.alignId++);
File f1 = new File( selectedNeOnOnto1.replace("file:","") );
File f2 = new File( selectedNeOnOnto2.replace("file:","") );
@@ -81,7 +81,7 @@ public class OfflineAlign {
AlignmentProcess A1 = null;
//String htmlString = null;
//Vector corrList = new Vector();
- Integer name = new Integer(SWTInterface.getNewAlignId());
+ Integer name = new Integer(AlignView.getNewAlignId());
try {
@@ -99,8 +99,8 @@ public class OfflineAlign {
A1.align((Alignment)null,p);
- //SWTInterface.alignObjects.clear();
- SWTInterface.alignmentTable.put( alignFolder.getAbsolutePath() + File.separator + name.toString(), (Alignment)A1 );
+ //AlignView.alignObjects.clear();
+ AlignView.alignmentTable.put( alignFolder.getAbsolutePath() + File.separator + name.toString(), (Alignment)A1 );
//for saving locally
@@ -130,9 +130,9 @@ public class OfflineAlign {
String trimAndExportAlign (Double thres, String id) {
- Integer name = new Integer(SWTInterface.getNewAlignId());
+ Integer name = new Integer(AlignView.getNewAlignId());
- Alignment A1 = SWTInterface.alignmentTable.get( id );
+ Alignment A1 = AlignView.alignmentTable.get( id );
//BasicAlignment clonedA1 = (BasicAlignment)((BasicAlignment)A1).clone();
BasicAlignment clonedA1 = null;
@@ -155,7 +155,7 @@ public class OfflineAlign {
rdfF.close();
clonedA1.cut(thres);
- SWTInterface.alignmentTable.put( alignFolder.getAbsolutePath() + File.separator + name.toString(), clonedA1 );
+ AlignView.alignmentTable.put( alignFolder.getAbsolutePath() + File.separator + name.toString(), clonedA1 );
File owlFile = new File( ontoFolder.getAbsolutePath() + File.separator + name.toString()+ ".owl");
if (owlFile.exists()) owlFile.delete();
@@ -176,10 +176,10 @@ public class OfflineAlign {
public String[] getAllAlign() {
- if (SWTInterface.alignmentTable.keys() == null) return null;
+ if (AlignView.alignmentTable.keys() == null) return null;
Vector<String> v = new Vector<String>();
- for (Enumeration e = SWTInterface.alignmentTable.keys() ; e.hasMoreElements() ;) {
+ for (Enumeration e = AlignView.alignmentTable.keys() ; e.hasMoreElements() ;) {
v.add((String)e.nextElement());
}
@@ -206,7 +206,7 @@ public class OfflineAlign {
String key = v.get(i).replace(".rdf", "");
//System.out.println("Path ="+ alignFolder.getAbsolutePath() + File.separator + v.get(i) );
- SWTInterface.alignmentTable.put( alignFolder.getAbsolutePath() + File.separator + key ,
+ AlignView.alignmentTable.put( alignFolder.getAbsolutePath() + File.separator + key ,
parser.parse(alignFolder.getAbsolutePath() + File.separator + v.get(i)) );
}
diff --git a/plugins/neon/src/fr/inrialpes/exmo/align/plugin/neontk/OnlineAlign.java b/plugins/neon/src/fr/inrialpes/exmo/align/plugin/neontk/OnlineAlign.java
index 33acc43387dfccb20ff78ebb381ac39fa99b4b72..323be34cdd6c101e3aad3734304841ceb058c134 100755
--- a/plugins/neon/src/fr/inrialpes/exmo/align/plugin/neontk/OnlineAlign.java
+++ b/plugins/neon/src/fr/inrialpes/exmo/align/plugin/neontk/OnlineAlign.java
@@ -179,7 +179,7 @@ public class OnlineAlign {
// Send message
//System.out.println("Trim Message="+ message);
- answer = sendMessage( message, params );
+ answer = sendMessageMonoThread( message, params );
//System.out.println("Trim Align="+ answer);
}
@@ -224,7 +224,7 @@ public class OnlineAlign {
//System.out.println("Message (methods) :"+ message);
// Send message
- answer = sendMessage( message, params );
+ answer = sendMessageMonoThread( message, params );
}
catch ( Exception ex ) { ex.printStackTrace(); };
//if(! connected ) return null;
@@ -266,7 +266,7 @@ public class OnlineAlign {
//System.out.println("Message :"+ message);
// Send message
- answer = sendMessage( message, params );
+ answer = sendMessageMonoThread( message, params );
//System.out.println("answer find=" + answer);
}
catch ( Exception ex ) { ex.printStackTrace(); };
@@ -311,7 +311,7 @@ public class OnlineAlign {
//System.out.println("Message :"+ message);
// Send message
- answer = sendMessage( message, params );
+ answer = sendMessageMonoThread( message, params );
//System.out.println("Answer get All :"+ answer);
}
catch ( Exception ex ) { ex.printStackTrace(); };
@@ -409,7 +409,7 @@ public class OnlineAlign {
// Send message
//answer = sendMessage( message, params );
- sendMessage( message, params );
+ sendMessageMonoThread( message, params );
//System.out.println("SOAP Match align=" + answer );
@@ -482,7 +482,7 @@ public class OnlineAlign {
//System.out.println("Message :" + message);
// Send message
- answer = sendMessage( message, params );
+ answer = sendMessageMonoThread( message, params );
//if(! connected ) return null;
} catch ( Exception ex ) { ex.printStackTrace(); };
@@ -554,7 +554,7 @@ public class OnlineAlign {
//answer = sendMessage( message, params );
//the result is put in "globalAnswer"
- sendMessage( message, params );
+ sendMessageMonoThread( message, params );
//if(! connected ) return null;
} catch ( Exception ex ) { ex.printStackTrace(); };
@@ -638,7 +638,7 @@ public class OnlineAlign {
//System.out.println("Message :"+ message);
// Send message
- answer = sendMessage( message, params );
+ answer = sendMessageMonoThread( message, params );
}
catch ( Exception ex ) { ex.printStackTrace() ;};
@@ -901,30 +901,7 @@ public class OnlineAlign {
out.close( );
if( param.getParameter("command").equals("retrieve") ) {
- /*
- try {
-
- AlignmentParser parser = new AlignmentParser( 0 );
- parser.initAlignment( null );
- parser.setEmbedded( true );
- BasicAlignment clonedA1 = (BasicAlignment) parser.parse( httpConn.getInputStream() );
-
- StringWriter sw = new StringWriter();
- AlignmentVisitor rdfV = new RDFRendererVisitor( new PrintWriter ( sw ) );
- clonedA1.render( rdfV );
- answer = sw.toString();
-
-
- } catch (SAXException saxex) {
- throw new AlignmentException( "Malformed XML/SOAP result ("+saxex.getMessage()+")", saxex );
- } catch (IOException ioex) {
- throw new AlignmentException( "XML/SOAP parsing error", ioex );
- } catch (javax.xml.parsers.ParserConfigurationException pcex) {
- throw new AlignmentException( "XML/SOAP parsing error", pcex );
- }
-
- System.out.println("RDF=" + answer );
- */
+
InputStreamReader isr = new InputStreamReader(httpConn.getInputStream());
BufferedReader in = new BufferedReader(isr);
@@ -962,224 +939,7 @@ public class OnlineAlign {
return answer;
}
- public String sendMessage( String message, Parameters param ) {
- // Create the connection
-
- byte[] b = message.getBytes();
-
- String answer = "";
-
- // Create HTTP Request
- try {
-
- URLConnection connection = SOAPUrl.openConnection();
- HttpURLConnection httpConn = (HttpURLConnection) connection;
- globalConn = httpConn;
-
- globalConn.setRequestProperty( "Content-Length",
- String.valueOf( b.length ) );
- globalConn.setRequestProperty("Content-Type","text/xml; charset=utf-8");
- globalConn.setRequestProperty("SOAPAction",SOAPAction);
- globalConn.setRequestMethod( "POST" );
- globalConn.setDoOutput(true);
- globalConn.setDoInput(true);
-
- // Send the request through the connection
- OutputStream out = globalConn.getOutputStream();
-
- out.write( b );
- out.close();
-
- if( param.getParameter("command").equals("match") ) {
-
- globalAnswer = "";
-
-
- Thread th = new Thread() {
-
- public void run() {
- ProgressMonitor pm = null;
-
- try {
-
- //JOptionPane.showMessageDialog(null, "Matching ontologies may be long.","Warning",2);
-
- InputStreamReader isr = new InputStreamReader( globalConn.getInputStream() );
- BufferedReader in = new BufferedReader(isr);
- String line;
-
- //String alignRes = "";
- StringBuffer strBuff = new StringBuffer();
- while ((line = in.readLine()) != null) {
- //alignRes += line + "\n";
- strBuff.append(line + "\n");
- }
-
- //String alignId = getAlignIdParsed( alignRes );
- String alignId = getAlignIdParsed( strBuff.toString() );
- if(alignId == null || alignId.equals("")) {
- JOptionPane.showMessageDialog(null, "Alignment is not produced.","Warning",2);
- SWTInterface.set3Buttons();
- return;
- }
-
- SWTInterface.resetAlignList( alignId );
- globalConn.disconnect();
-
- URLConnection connection2 = SOAPUrl.openConnection();
- globalConn2 = (HttpURLConnection) connection2;
-
- //To fetch alignment from alignId
- Parameters params = new BasicParameters();
- params = new BasicParameters();
- params.setParameter( "host", HOST );
- params.setParameter( "command","retrieve");
- params.setParameter( "arg1", alignId);
- params.setParameter( "arg2", "fr.inrialpes.exmo.align.impl.renderer.RDFRendererVisitor");
- //SOAPAction is updated
- String message = createMessage( params );
- byte[] bb = message.getBytes();
-
- globalConn2.setRequestProperty( "Content-Length",
- String.valueOf( bb.length ) );
- globalConn2.setRequestProperty("Content-Type","text/xml; charset=utf-8");
- globalConn2.setRequestProperty("SOAPAction",SOAPAction);
- globalConn2.setRequestMethod( "POST" );
- globalConn2.setDoOutput(true);
- globalConn2.setDoInput(true);
-
- // Send the request through the connection
- OutputStream out2 = globalConn2.getOutputStream();
-
- out2.write( bb );
- out2.close();
-
- int maxSize = 5000000;
- //ProgressMonitor pm2 = null;
- String mess = "Fetching alignment from server...";
-
- ProgressMonitorInputStream pin = new ProgressMonitorInputStream( null, mess, globalConn2.getInputStream() );
- pm = pin.getProgressMonitor();
- pm.setMaximum( maxSize );
- pm.setMillisToPopup( 1 );
- pm.setMillisToDecideToPopup( 2 );
-
- InputStreamReader isr2 = new InputStreamReader(pin);
- BufferedReader in2 = new BufferedReader(isr2);
-
- //String line;
- int co = 0;
- StringBuffer strBuff2 = new StringBuffer();
- while ((line = in2.readLine()) != null) {
- strBuff2.append( line + "\n");
- //globalAnswer += line + "\n";
- co += line.length();
- pm.setNote(co + " bytes read.");
- if( co >= maxSize -10000 ) {
- maxSize = co + line.length() + maxSize;
- pm.setMaximum( maxSize );
- pm.setProgress( co );
- }
- }
- globalAnswer = strBuff2.toString();
-
- SWTInterface.resetActionButtons( true );
-
- pm.setProgress( maxSize - 1 );
- pin.close();
- } catch (Exception e) {
-
- if( pm.isCanceled()) {
- SWTInterface.set3Buttons();
- }
- e.printStackTrace();
- }
- }
- };
-
- th.start();
-
- } else if( param.getParameter("command").equals("retrieve") ) { //|| param.getParameter("command").equals("match")) {
-
- globalAnswer = "";
- Thread th = new Thread() {
-
- public void run() {
- ProgressMonitor pm = null;
- try {
-
- String mess = "Fetching alignment from server,";
- int maxSize = 5000000; // size in byte
-
- ProgressMonitorInputStream pin = new ProgressMonitorInputStream( null, mess, globalConn.getInputStream() );
-
- pm = pin.getProgressMonitor();
- pm.setMaximum( maxSize );
- pm.setMillisToPopup( 1 );
- pm.setMillisToDecideToPopup( 2 );
-
- InputStreamReader isr = new InputStreamReader(pin);
- BufferedReader in = new BufferedReader(isr);
-
- String line;
- int co = 0;
- StringBuffer strBuff3 = new StringBuffer();
-
- while ((line = in.readLine()) != null) {
- //globalAnswer += line + "\n";
- strBuff3.append( line + "\n" );
- co += line.length();
- pm.setNote(co + " bytes read.");
- if( co >= maxSize -10000 ) {
- maxSize = co + line.length() + maxSize;
- pm.setMaximum( maxSize );
- pm.setProgress( co );
- }
- }
- globalAnswer = strBuff3.toString();
- SWTInterface.resetActionButtons( true );
-
- pm.setProgress( maxSize - 1 );
- pin.close();
- } catch (Exception e) {
-
- if( pm.isCanceled() ) {
- SWTInterface.set3Buttons( );
- }
- e.printStackTrace();
- }
- }
- };
-
- th.start();
-
- } else {
-
- InputStreamReader isr = new InputStreamReader( httpConn.getInputStream() );
- BufferedReader in = new BufferedReader( isr );
- String line;
- StringBuffer strBuff4 = new StringBuffer();
- while ((line = in.readLine()) != null) {
- strBuff4.append( line + "\n" );
- //answer += line + "\n";
- }
- answer = strBuff4.toString();
- in.close();
- }
- //System.out.println("answer= " + answer);
-
- if(httpConn.HTTP_REQ_TOO_LONG == httpConn.getResponseCode()) System.err.println("Request too long");
-
- //if(httpConn.HTTP_OK == httpConn.getResponseCode()) System.out.println("Request OK");
-
- } catch (Exception ex) {
- connected= false; ex.printStackTrace() ; return null;
- }
-
- connected = true;
-
- return answer;
- }
+
public String sendFile( String message, Parameters param ) {
// Create the connection
diff --git a/plugins/neon/src/fr/inrialpes/exmo/align/plugin/neontk/OnlineDialog.java b/plugins/neon/src/fr/inrialpes/exmo/align/plugin/neontk/OnlineDialog.java
index 565593594d3ba42857d920bb9e30e9157e3535c3..123df2ab0881b5c6ede8c8a4a5c4012eb8c48ee8 100644
--- a/plugins/neon/src/fr/inrialpes/exmo/align/plugin/neontk/OnlineDialog.java
+++ b/plugins/neon/src/fr/inrialpes/exmo/align/plugin/neontk/OnlineDialog.java
@@ -47,8 +47,7 @@ public class OnlineDialog extends Dialog {
public OnlineDialog(Shell parent, int style) {
// Let users override the default styles
super(parent, style);
- setText("Alignment Server");
- setMessage("Please enter server URL:");
+ setText("Input");
}
public String getMessage() {
@@ -100,7 +99,7 @@ public class OnlineDialog extends Dialog {
// Display the input box
final Text text = new Text(shell, SWT.BORDER);
- text.setText("aserv.inrialpes.fr");
+ text.setText(input);
data = new GridData(GridData.FILL_HORIZONTAL);
data.horizontalSpan = 2;
text.setLayoutData(data);
diff --git a/plugins/neon/src/fr/inrialpes/exmo/align/plugin/neontk/SWTInterface.java b/plugins/neon/src/fr/inrialpes/exmo/align/plugin/neontk/SWTInterface.java
deleted file mode 100644
index fe57d131e21bc294c31dfac17b9785cefc11d1df..0000000000000000000000000000000000000000
--- a/plugins/neon/src/fr/inrialpes/exmo/align/plugin/neontk/SWTInterface.java
+++ /dev/null
@@ -1,1596 +0,0 @@
-/*
- * $Id$
- *
- * Copyright (C) INRIA, 2007-2008
- *
- * This program is free software; you can redistribute it and/or modify
- * it under the terms of the GNU Lesser General Public License as published by
- * the Free Software Foundation; either version 2.1 of the License, or
- * (at your option) any later version.
- *
- * This program is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU Lesser General Public License for more details.
- *
- * You should have received a copy of the GNU Lesser General Public License
- * along with this program; if not, write to the Free Software
- * Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
- */
-
-package fr.inrialpes.exmo.align.plugin.neontk;
-
-import java.io.BufferedReader;
-import java.io.File;
-import java.io.FileWriter;
-import java.io.InputStreamReader;
-import java.io.PrintWriter;
-import java.io.StringWriter;
-import java.io.InputStream;
-import java.io.FileInputStream;
-import java.net.MalformedURLException;
-import java.net.URI;
-import java.awt.Component;
-import java.awt.BorderLayout;
-import java.awt.FlowLayout;
-import java.awt.GridLayout;
-import java.awt.Point;
-import java.awt.event.ActionListener;
-import java.awt.Frame;
-
-import java.awt.event.ItemListener;
-import java.awt.event.ItemEvent;
-import java.awt.event.ActionEvent;
-import java.awt.Container;
-import java.awt.Dimension;
-import java.awt.Insets;
-import java.awt.Toolkit;
-import java.util.Properties;
-import java.util.Set;
-import java.util.Vector;
-import java.util.ArrayList;
-import java.util.Hashtable;
-import java.util.HashMap;
-
-import javax.swing.JLabel;
-import javax.swing.JComboBox;
-import javax.swing.DefaultComboBoxModel;
-import javax.swing.JPanel;
-import javax.swing.JFrame;
-import javax.swing.JSplitPane;
-import javax.swing.JComponent;
-import javax.swing.JTextField;
-import javax.swing.ProgressMonitor;
-import javax.swing.ProgressMonitorInputStream;
-//import javax.swing.JFileChooser;
-import javax.swing.JTextArea;
-import javax.swing.JButton;
-import javax.swing.JOptionPane;
-import java.awt.event.MouseAdapter;
-//import javax.swing.SwingConstants;
-import javax.swing.JScrollPane;
-import javax.swing.BorderFactory;
-import javax.swing.JDialog;
-import javax.swing.JEditorPane;
-import javax.swing.Timer;
-import javax.swing.SwingUtilities;
-import org.eclipse.swt.SWT;
-
-import java.net.HttpURLConnection;
-
-//import java.net.URL;
-import java.net.URLConnection;
-
-
-
-//import org.semanticweb.owl.align.AlignmentProcess;
-import org.semanticweb.owl.align.Alignment;
-//import org.semanticweb.owl.align.AlignmentProcess;
-import org.semanticweb.owl.align.AlignmentVisitor;
-//import org.semanticweb.owl.align.Parameters;
-import org.w3c.dom.Document;
-import org.w3c.dom.Element;
-import org.w3c.dom.Node;
-import org.w3c.dom.NodeList;
-
-//import org.eclipse.core.resources.ResourcesPlugin;
-//import org.eclipse.core.resources.IWorkspace;
-import org.eclipse.core.resources.IWorkspaceRoot;
-import org.eclipse.core.runtime.IPath;
-//import org.eclipse.core.resources.IProject;
-//import org.semanticweb.kaon2.api.Ontology;
-//import org.semanticweb.kaon2.api.KAON2Connection;
-import org.semanticweb.kaon2.api.OntologyManager;
-//import org.semanticweb.kaon2.api.KAON2Exception;
-//import org.semanticweb.kaon2.api.formatting.OntologyFileFormat;
-import com.ontoprise.config.IConfig;
-import com.ontoprise.ontostudio.datamodel.DatamodelPlugin;
-import com.ontoprise.ontostudio.datamodel.DatamodelTypes;
-//import com.ontoprise.ontostudio.gui.navigator.module.ModuleTreeElement;
-import com.ontoprise.ontostudio.io.ImportExportControl;
-//import com.ontoprise.ontostudio.gui.commands.CreateProject;
-import com.ontoprise.ontostudio.gui.commands.project.CreateProject;
-import com.ontoprise.ontostudio.datamodel.exception.ControlException;
-//import com.ontoprise.ontostudio.gui.navigator.project.ProjectControl;
-//import org.semanticweb.kaon2.api.formatting.OntologyFileFormat;
-//import org.eclipse.core.runtime.IProgressMonitor;
-//import com.ontoprise.ontostudio.owl.datamodel.*;
-//import fr.inrialpes.exmo.align.onto.OntologyCache;
-import fr.inrialpes.exmo.align.onto.OntologyFactory;
-import fr.inrialpes.exmo.align.parser.AlignmentParser;
-import fr.inrialpes.exmo.align.onto.owlapi10.OWLAPIOntologyFactory;
-
-import org.semanticweb.owl.align.Cell;
-//import fr.inrialpes.exmo.align.impl.Ontology;
-import fr.inrialpes.exmo.align.impl.BasicCell;
-//import org.semanticweb.owl.align.Relation;
-
-import fr.inrialpes.exmo.align.impl.BasicAlignment;
-//import fr.inrialpes.exmo.align.impl.BasicParameters;
-import fr.inrialpes.exmo.align.impl.ObjectAlignment;
-import fr.inrialpes.exmo.align.impl.URIAlignment;
-//import fr.inrialpes.exmo.align.impl.renderer.RDFRendererVisitor;
-import fr.inrialpes.exmo.align.impl.renderer.HTMLRendererVisitor;
-import fr.inrialpes.exmo.align.impl.renderer.OWLAxiomsRendererVisitor;
-
-public class SWTInterface extends JPanel {
-
- private static final long serialVersionUID = 330;
-
- private static JSplitPane _mainSplitter = new JSplitPane (JSplitPane.VERTICAL_SPLIT);
-
-
- JLabel hostName, portName, serverName, methodName;//, alignProjLabel;
-
- //JComboBox hostList, portList;
-
- String selectedHost = null;
- String selectedPort = null;
- String selectedOnto1 = null;
- String selectedOnto2 = null;
-
- String selectedLocalAlign = null;
- static String selectedAlign = null;
-
- public static Hashtable<String,Alignment> alignmentTable = new Hashtable<String,Alignment>();
- static String [] forUniqueness = new String[0];
- static int alignId = 0;
-
- JComponent phrases;
-
- JTextField fileName1, fileName2, hostField, portField, serverField, methodField;
- SWTInterface frame;
-
- JEditorPane htmlView;
-
- JButton cancelButton, discardButton, resButton, ontoRefresh,
- localAlignImportButton, alignUploadButton,
- localAlignTrimButton, connButton, goButton, offlineButton, onlineButton;
-
- static JButton alignStoreButton, alignImportButton, serverAlignTrimButton, mapButton, alignFindButton, allAlignButton, fetchButton;
-
- JDialog connDialog, matchDialog;
- //JPanel pane2;
- Component result = null;
- JComboBox strategy, renderer, localAlignBox, ontoBox1, ontoBox2;
-
-
- static JComboBox alignBox;
- JLabel strat, render, ontoLabel1, ontoLabel2, alignLabel, localAlignLabel;
-
- //lists obtained from from server
- public String [] methodList = new String[0];
-
- //lists obtained from Neontk
- public String [] ontoList = new String[0];
- public HashMap<String,String> onto_proj = new HashMap<String,String>(0);
- //public String [] NeOnOntoList = new String[0];
- public static String [] alignIdList = new String[0];
- public String [] localAlignIdList = new String[0];
-
- public Vector corrList = new Vector();
- public String [] aservArgs = null;
- public String [] aservArgRetrieve = null;
- public String [] aservArgAlign = null;
- public String [] files = new String[2];
- int ind=0, rend=0, count=0;
-
- boolean online = false;
- //boolean chosenPort = false;
- String defaultHost = "aserv.inrialpes.fr";
- //String defaultPort = "8089";
- String defaultPort = "80";
- String matchMethod = "fr.inrialpes.exmo.align.impl.method.NameEqAlignment";
- String wserver = "http://kameleon.ijs.si/ontolight/ontolight.asmx";
- String wsmethod="";
- //rethink
-
- String alignProject = "AlignmentProject";
-
- public OnlineAlign onAlign = null;
- public OfflineAlign offAlign = null;
- public File ontoFolder = null;
- public File alignFolder = null;
- public static File basicFolder = null;
-
-
- public void offlineInit(boolean init){
- //OntologyFactory.setDefaultFactory("fr.inrialpes.exmo.align.onto.owlapi2.OWLAPI2OntologyFactory");
- online = false;
- offAlign = new OfflineAlign( alignFolder, ontoFolder );
-
- ontoBox1.setEnabled(true);
- ontoBox2.setEnabled(true);
- ontoRefresh.setEnabled(true);
- strategy.setEnabled(true);
-
- mapButton.setEnabled(true);
-
- localAlignBox.setEnabled(true);
-
- onlineButton.setEnabled(true);
-
- localAlignImportButton.setEnabled(true);
- allAlignButton.setEnabled(true);
-
- //threshold.setEnabled(true);
- localAlignTrimButton.setEnabled(true);
- serverAlignTrimButton.setEnabled(false);
-
- alignFindButton.setEnabled(false);
-
- alignImportButton.setEnabled(false);
- //fetchButton.setEnabled(false);
- alignUploadButton.setEnabled(false);
-
- alignBox.setEnabled(false);
-
- alignStoreButton.setEnabled(false);
-
- offlineButton.setEnabled(false);
-
- strategy.removeAllItems();
- alignBox.removeAllItems();
- localAlignBox.removeAllItems();
- ontoBox1.removeAllItems();
- ontoBox2.removeAllItems();
-
- ontoList = new String[0];
- onto_proj = new HashMap<String,String>(0);
- //NeOnOntoList = new String[0];
- alignIdList = new String[0];
- //localAlignIdList = new String[0];
-
- selectedOnto1 = null;
- selectedOnto2 = null;
- selectedAlign = null;
- //selectedNeOnOnto1 = null;
- //selectedNeOnOnto2 = null;
-
- //methodList = new String[9];
- methodList = new String[8];
- methodList[0] = "fr.inrialpes.exmo.align.impl.method.NameEqAlignment";
- strategy.addItem(methodList[0]);
- methodList[1] = "fr.inrialpes.exmo.align.impl.method.StringDistAlignment";
- strategy.addItem(methodList[1]);
- methodList[2] = "fr.inrialpes.exmo.align.impl.method.SMOANameAlignment";
- strategy.addItem(methodList[2]);
- methodList[3] = "fr.inrialpes.exmo.align.impl.method.SubsDistNameAlignment";
- strategy.addItem(methodList[3]);
- methodList[4] = "fr.inrialpes.exmo.align.impl.method.StrucSubsDistAlignment";
- strategy.addItem(methodList[4]);
- methodList[5] = "fr.inrialpes.exmo.align.impl.method.NameAndPropertyAlignment";
- strategy.addItem(methodList[5]);
- methodList[6] = "fr.inrialpes.exmo.align.impl.method.ClassStructAlignment";
- strategy.addItem(methodList[6]);
- methodList[7] = "fr.inrialpes.exmo.align.impl.method.EditDistNameAlignment";
- strategy.addItem(methodList[7]);
- //methodList[8] = "fr.inrialpes.exmo.align.ling.JWNLAlignment";
- //strategy.addItem(methodList[8]);
-
- if(init) offAlign.getAllAlignFromFiles();
-
- String[] list = offAlign.getAllAlign();
- if(list!=null) {
- localAlignIdList = new String[list.length];
- localAlignBox.removeAllItems();
-
- forUniqueness = new String[list.length];
-
- for(int i=0; i< list.length; i++){
- localAlignIdList[i]= list[i];
- localAlignBox.addItem(list[i]);
- File f = new File(list[i]);
- forUniqueness[i] = f.getName();
- }
-
- if(localAlignIdList.length > 0) {
- selectedLocalAlign = localAlignIdList[0];
- }
- }
- }
-
- public static int getNewAlignId() {
-
- boolean found = false;
- alignId++;
- while(!found) {
-
- boolean sw = false;
- for(int i=0;i< forUniqueness.length; i++)
- if(forUniqueness[i].equals((new Integer(alignId)).toString())) {
- alignId++;
- sw = true;
- break;
- }
-
- if( !sw ) found = true;
-
- }
-
- return alignId;
- }
-
- public static void resetAlignList(String alignId) {
-
- alignIdList = new String[1];
- alignIdList[0] = alignId;
- selectedAlign = alignIdList[0];
- if(alignBox.getItemCount() > 0) alignBox.removeAllItems();
- alignBox.addItem(selectedAlign);
-
- }
-
- public static void resetActionButtons( boolean flag ) {
-
- alignImportButton.setEnabled( flag );
- alignStoreButton.setEnabled( flag );
- serverAlignTrimButton.setEnabled( flag );
- //mapButton.setEnabled( flag );
- //alignFindButton.setEnabled( flag );
- //allAlignButton.setEnabled( flag );
-
- }
-
- public static void set3Buttons( ) {
- mapButton.setEnabled( true );
- alignFindButton.setEnabled( true );
- allAlignButton.setEnabled( true );
- }
-
- public static void setFetchButton( boolean flag) {
- fetchButton.setEnabled( flag );
- //alignFindButton.setEnabled( flag );
- //allAlignButton.setEnabled( flag );
- alignImportButton.setEnabled( !flag );
- alignStoreButton.setEnabled( !flag );
- serverAlignTrimButton.setEnabled( !flag );
- }
-
-
-
- public void initialize() {
-
- //selectedHost = "aserv.inrialpes.fr";
- //selectedPort = "8089";
-
- IWorkspaceRoot root = org.eclipse.core.resources.ResourcesPlugin.getWorkspace().getRoot();
- IPath location = root.getLocation();
- String path = location.toOSString();
-
- htmlView = new JEditorPane();
- htmlView.setEditable(false);
- htmlView.setContentType("text/html");
- htmlView.setBackground( this.getBackground() );
- htmlView.setBounds( 0, 0, 500, 500 );
-
- //ontoFolder = new File(path + location.SEPARATOR + "onto");
- ontoFolder = new File(path + location.SEPARATOR + "align");
-
- if (!ontoFolder.exists()) ontoFolder.mkdir();
- basicFolder = new File(path + location.SEPARATOR );
- alignFolder = new File(path + location.SEPARATOR + "align");
- if (!alignFolder.exists()) alignFolder.mkdir();
-
- //System.out.println("alignFolder=" + alignFolder.getAbsolutePath());
-
- offlineButton = new JButton("Offline",null);
- offlineButton.addActionListener(new ActionListener(){
- public void actionPerformed(ActionEvent e) {
- if (e.getSource() == offlineButton) {
- offlineInit(false);
- }
- };
- });
-
- onlineButton = new JButton("Online",null);
- onlineButton.addActionListener(new ActionListener(){
- @SuppressWarnings("deprecation")
- public void actionPerformed(ActionEvent e) {
- if (e.getSource() == onlineButton) {
- online = true;
-
- JOptionPane pane = new JOptionPane();
- connDialog = pane.createDialog(null, "Input for connection");
- connDialog.setSize(new Dimension(300,120));
-
- Container cont = connDialog.getContentPane();
- Component[] comps = cont.getComponents();
- for(int i=0;i< comps.length ;i++) { cont.remove(comps[i]);}
-
- cont.add(connButton);
- cont.add(cancelButton);
-
- JPanel jPane = new JPanel (new GridLayout (3, 2, 20, 10));
-
- jPane.add(hostName); jPane.add(hostField);
- jPane.add(portName); jPane.add(portField);
- jPane.add(connButton);
- jPane.add(cancelButton);
-
- connDialog.setContentPane(jPane);
- connDialog.setVisible(true);
- ontoBox1.removeAllItems();
- ontoBox2.removeAllItems();
- }
-
- };
- });
-
- selectedHost = defaultHost;
- hostName = new JLabel( "Host name" );
- hostField = new JTextField( defaultHost, 15 );
- hostField.setEnabled(true);
- hostField.setEditable( true );
-
- selectedPort = defaultPort;
- portName = new JLabel( "Port" );
- portField = new JTextField( defaultPort, 4 );
- portField.setEnabled(true);
- portField.setEditable( true );
-
- serverName = new JLabel( "wserver" );
- serverField = new JTextField( wserver , 50 );
- serverField.setEnabled(true);
- serverField.setEditable( true );
-
- methodName = new JLabel( "wsmethod" );
- methodField = new JTextField( "", 50 );
- methodField.setEnabled(true);
- methodField.setEditable( true );
-
- connButton = new JButton("Connect",null);
- connButton.setEnabled(true);
-
- connButton.addActionListener(new ActionListener(){
- public void actionPerformed(ActionEvent e) {
- if (e.getSource() == connButton) {
-
- // for connecting to server
-
- selectedHost = hostField.getText();
- selectedPort = portField.getText();
- //parentComponent = getParent();
- onAlign = new OnlineAlign(selectedPort, selectedHost );
-
- String list[] = onAlign.getMethods();
- if(list == null || list.length ==0) {
- JOptionPane.showMessageDialog(null, "Impossible connection!","Warning",2);
- return;
- }
-
- methodList = new String[list.length];
- strategy.removeAllItems();
-
- for(int i=0; i< list.length; i++){
-
- methodList[i]= list[i];
- strategy.addItem(list[i]);
- }
-
-
- ontoBox1.setEnabled(true);
- ontoBox2.setEnabled(true);
- strategy.setEnabled(true);
- ontoRefresh.setEnabled(true);
- mapButton.setEnabled(true);
-
- alignBox.setEnabled(true);
- localAlignBox.setEnabled(true);
-
- alignImportButton.setEnabled(false);
- alignStoreButton.setEnabled(false);
- serverAlignTrimButton.setEnabled(false);
- //fetchButton.setEnabled(true);
-
- localAlignImportButton.setEnabled(true);
- alignUploadButton.setEnabled(true);
- alignFindButton.setEnabled(true);
- allAlignButton.setEnabled(true);
-
- offlineButton.setEnabled(true);
- onlineButton.setEnabled(false);
-
- localAlignTrimButton.setEnabled(true);
-
- ontoRefresh.setEnabled(true);
-
- mapButton.setEnabled(true);
- strategy.setEnabled(true);
-
- online = true;
-
- connDialog.dispose();
-
- }
-
- };
- });
-
-
- cancelButton = new JButton("Cancel",null);
- cancelButton.setEnabled(true);
- cancelButton.addActionListener(new ActionListener(){
- public void actionPerformed(ActionEvent e) {
- if (e.getSource() == cancelButton) {
- //System.out.println("Cancel");
- connDialog.dispose();
-
- }
- };
- });
-
- discardButton = new JButton("Discard",null);
- discardButton.setEnabled(true);
- discardButton.addActionListener(new ActionListener(){
- public void actionPerformed(ActionEvent e) {
- if (e.getSource() == discardButton) {
- //System.out.println("Cancel");
- matchDialog.dispose();
-
- }
- };
- });
-
- alignLabel = new JLabel("Server alignments");
- alignBox = new JComboBox(alignIdList);
- alignBox.setEnabled(false);
- alignBox = new JComboBox(alignIdList);
- alignBox.setEnabled(false);
-
- alignBox.setMaximumRowCount(20);
- alignBox.addItemListener(new ItemListener() {
- public void itemStateChanged(ItemEvent event)
- {
- int id = 0;
- if (event.getStateChange()==ItemEvent.SELECTED)
- id = alignBox.getSelectedIndex();
-
- selectedAlign = alignIdList[id];
-
- //System.out.println("Align selected =" + selectedAlign);
- }
- });
-
- localAlignLabel = new JLabel("Local alignments ");
- localAlignBox = new JComboBox(localAlignIdList);
- localAlignBox.setEnabled(false);
- localAlignBox = new JComboBox(localAlignIdList);
- localAlignBox.setEnabled(false);
-
- localAlignBox.setMaximumRowCount(20);
- localAlignBox.addItemListener(new ItemListener() {
- public void itemStateChanged(ItemEvent event)
- {
- int id = 0;
- if (event.getStateChange()==ItemEvent.SELECTED)
- id = localAlignBox.getSelectedIndex();
-
- selectedLocalAlign = localAlignIdList[id];
- }
- });
-
- localAlignImportButton = new JButton("Import",null);
- localAlignImportButton.setEnabled(false);
- localAlignImportButton.addActionListener(new ActionListener(){
- public void actionPerformed(ActionEvent e) {
- if (e.getSource() == localAlignImportButton) {
- if(selectedLocalAlign == null) {
- JOptionPane.showMessageDialog(null, "Choose an alignment ID from list!","Warning",2);
- return;
- }
-
- File fn = new File(selectedLocalAlign + ".owl");
- //if (fn.exists()) fn.delete();
- //System.out.println("Filename off to export :"+ fn.getAbsolutePath());
-
- StringWriter htmlMessage = new StringWriter();
- AlignmentVisitor htmlV = new HTMLRendererVisitor( new PrintWriter ( htmlMessage ) );
-
- try {
- SWTInterface.alignmentTable.get(selectedLocalAlign).render( htmlV );
-
- htmlView.setText( htmlMessage.toString() );
-
- htmlView.setLocation( new Point( 0, 0 ) );
-
- htmlView.setVisible(true);
-
- String inputName=null;
-
- inputName = JOptionPane.showInputDialog(null, "Enter a project name", "AlignmentProject");
-
- if (inputName==null || inputName.equals("")) return;
-
- String[] projects = DatamodelPlugin.getDefault().getOntologyProjects();
- if(projects!=null) {
- boolean found = false;
-
- for(int i=0; i < projects.length; i++) {
-
- if(projects[i].equals(inputName)) {
- found = true;break;
- }
- }
-
- if(!found) {
- Properties proper = new Properties();
- proper.put(IConfig.ONTOLOGY_LANGUAGE.toString(), IConfig.OntologyLanguage.OWL.toString());
- new CreateProject( inputName, DatamodelTypes.RAM, proper ).run();
-
- }
-
- ImportExportControl ieControl = new ImportExportControl();
- URI uris[] = new URI[1];
- uris[0] = new File(fn.getAbsolutePath()).toURI();
- ieControl.importFileSystem(inputName, uris, null);
- //ieControl.addOntologies2Project(importedModules, inputName);
- }
- }
- catch ( Exception ex ) { ex.printStackTrace();};
-
- }//choose an align
-
-
- }
- });
-
- alignUploadButton = new JButton("Upload",null);
- alignUploadButton.setEnabled(false);
- alignUploadButton.addActionListener(new ActionListener(){
- public void actionPerformed(ActionEvent e) {
- if (e.getSource() == alignUploadButton) {
- if(selectedLocalAlign == null)
- JOptionPane.showMessageDialog(null, "Choose an alignment ID from list!","Warning",2);
- else {
-
- //File fn = new File( selectedLocalAlign + ".rdf" );
- //System.out.println("file name off to export :"+ fn.getName());
-
- try {
- String uploaded = onAlign.uploadAlign(selectedLocalAlign + ".rdf");
-
- localAlignIdList = new String[1];
- localAlignIdList[0] = selectedLocalAlign;
- localAlignBox.removeAllItems();
- localAlignBox.addItem(selectedLocalAlign);
-
- JOptionPane.showMessageDialog(null, "Uploaded alignment : "+ uploaded,"Warning",2);
-
- } catch ( Exception ex ) { ex.printStackTrace();}
- }
- }
- }
- });
-
- fetchButton = new JButton("Fetch",null);
- fetchButton.setEnabled(false);
- fetchButton.addActionListener(new ActionListener(){
- public void actionPerformed(ActionEvent e) {
-
- resetActionButtons( false );
-
- if (e.getSource() == fetchButton) {
-
- if(selectedAlign == null) {
- JOptionPane.showMessageDialog(null, "Choose an alignment ID from list!","Warning",2);
- return;
- }
- /*
- alignIdList = new String[1];
- alignIdList[0] = selectedAlign;
- alignBox.removeAllItems();
- alignBox.addItem(selectedAlign);
- onAlign.getRDFAlignment( selectedAlign );
- */
-
- JOptionPane.showMessageDialog(null, "This operation may take a while.","Warning",2);
- alignIdList = new String[1];
- alignIdList[0] = selectedAlign;
- alignBox.removeAllItems();
- alignBox.addItem(selectedAlign);
- onAlign.getRDFAlignmentMonoThread( selectedAlign );
- setFetchButton( false );
-
- }
- };
- });
-
- alignImportButton = new JButton("Import",null);
- alignImportButton.setEnabled(false);
- alignImportButton.addActionListener(new ActionListener(){
- public void actionPerformed(ActionEvent e) {
- if (e.getSource() == alignImportButton) {
-
- if(selectedAlign == null) {
- JOptionPane.showMessageDialog(null, "Choose an alignment ID from list!","Warning",2);
- return;
- }
- //the name originated from the server is a URL so slashes are used
- //String [] sali = selectedAlign.split("/");
- //String uniqueId = sali[sali.length-2].concat(sali[sali.length-1]);
-
- String inputName = null;
-
- FileWriter out = null;
-
- //export to local List
-
- String rdfalignStr = onAlign.getRDFAlignmentParsed( );// selectedAlign , alignImportButton, alignStoreButton,
- //serverAlignTrimButton, allAlignButton, alignFindButton, mapButton );
-
- String alignKey = alignFolder.getAbsolutePath() + File.separator + getNewAlignId();
-
- alignIdList = new String[1];
- alignIdList[0] = selectedAlign;
- alignBox.removeAllItems();
- alignBox.addItem( alignIdList[0] );
-
- String rdfPath = alignKey + ".rdf";
-
- URIAlignment align = null;
- String owlalignStr = null;
-
- try {
-
- File rdfFile = new File( rdfPath );
-
- out = new FileWriter( rdfFile );
- out.write( rdfalignStr );
- out.flush();
- out.close();
-
- File file = new File(rdfPath);
-
- AlignmentParser ap = new AlignmentParser(0);
- ap.setEmbedded( true );
- align = (URIAlignment)ap.parse(file.toURI().toString());
-
- SWTInterface.alignmentTable.put( alignKey , (Alignment)align );
-
- String[] list = offAlign.getAllAlign( );
-
- if(list != null) {
- localAlignIdList = new String[1];
- localAlignBox.removeAllItems();
-
- for(int i=0; i< list.length; i++){
- if(list[i].equals(alignKey)) {
- localAlignIdList[0]= list[i];
- localAlignBox.addItem(list[i]);
- break;
- }
- }
-
- if(localAlignIdList.length > 0) {
- selectedLocalAlign = localAlignIdList[0];
- }
- }
-
- StringWriter htmlMessage = new StringWriter();
- AlignmentVisitor htmlV = new HTMLRendererVisitor( new PrintWriter ( htmlMessage ) );
-
- align.render( htmlV );
-
- if(htmlMessage.toString()==null || htmlMessage.toString().equals("")) {
- htmlView.setText( "" );
- } else {
-
- //String htmlText = htmlMessage.toString();
- //if(htmlText.length() > 1000000)
- // JOptionPane.showMessageDialog(null, "Too big alignment!","Warning",2);
- //htmlView.getEditorKit().createDefaultDocument();
- htmlView.setText( htmlMessage.toString() );
- }
-
- htmlView.setLocation( new Point( 0, 0 ) );
-
- htmlView.setVisible(true);
- //get align from server, then export it as owl onto
- StringWriter owlMessage = new StringWriter();
- AlignmentVisitor owlV = new OWLAxiomsRendererVisitor( new PrintWriter ( owlMessage ) );
- ObjectAlignment al = ObjectAlignment.toObjectAlignment( (URIAlignment)align );
- //BasicAlignment al = (BasicAlignment)align;
- al.render( owlV );
-
- owlalignStr = owlMessage.toString();
-
- }
- catch ( Exception ex ) { ex.printStackTrace();};
-
-
- if(owlalignStr==null) {
- JOptionPane.showMessageDialog(null, "OWL alignment cannot be exported.","Warning",2);
- return;
- }
-
- try {
-
- inputName = JOptionPane.showInputDialog(null, "Enter a project name", "AlignmentProject");
-
- if (inputName==null || inputName.equals("")) return;
-
- String[] projects = DatamodelPlugin.getDefault().getOntologyProjects();
- if(projects!=null) {
- boolean found = false;
-
- for(int i=0; i < projects.length; i++) {
-
- if(projects[i].equals(inputName)) {
- found = true;break;
- }
- }
-
- if(!found) {
-
- Properties proper = new Properties();
- proper.put(IConfig.ONTOLOGY_LANGUAGE.toString(), IConfig.OntologyLanguage.OWL.toString());
- new CreateProject( inputName, DatamodelTypes.RAM, proper ).run();
- }
- }
-
- String owlPath = ontoFolder.getAbsolutePath() + File.separator + getNewAlignId() + ".owl";
- File owlFile = new File( owlPath );
- if (owlFile.exists()) owlFile.delete();
-
- out = new FileWriter( owlFile );
- out.write( owlalignStr );
- out.flush();
- out.close();
-
- try {
- ImportExportControl ieControl = new ImportExportControl();
- URI uris[] = new URI[1];
- uris[0] = new File( owlPath).toURI();
- String[] importedModules = ieControl.importFileSystem(inputName, uris, null);
-
- //ieControl.addOntologies2Project(importedModules, inputName);
- } catch ( ControlException ex ) { }
-
- }
- catch ( Exception ex ) { ex.printStackTrace();}
-
- }
- };
- });
-
- allAlignButton = new JButton("Fetch available alignments", null);
- allAlignButton.setEnabled(false);
- allAlignButton.addActionListener(new ActionListener(){
- public void actionPerformed(ActionEvent e) {
- if (e.getSource() == allAlignButton) {
-
- // for connecting to server
- //onAlign = new OnlineAlign(selectedPort, selectedHost);
- String[] list = null;
- if(online) {
- list = onAlign.getAllAlign();
- if(list == null || list.length==0) {
- JOptionPane.showMessageDialog(null, "Impossible connection!","Warning",2);
- return;
- }
-
- //String[] list = getResultsFromAnswer( aa , "alid", null );
-
- alignIdList = new String[list.length];
- alignBox.removeAllItems();
-
- for(int i=0; i< list.length; i++){
- alignIdList[i]= list[i];
- alignBox.addItem(list[i]);
- }
-
- if(alignIdList.length > 0) {
- selectedAlign = alignIdList[0];
- }
-
- String[] list1 = offAlign.getAllAlign( );
- if(list1!=null) {
- localAlignIdList = new String[list1.length];
- localAlignBox.removeAllItems();
-
- for(int i=0; i< list1.length; i++){
- localAlignIdList[i]= list1[i];
- localAlignBox.addItem(list1[i]);
- }
-
- if(localAlignIdList.length > 0) {
- selectedLocalAlign = localAlignIdList[0];
- }
- }
-
- fetchButton.setEnabled(true);
- alignImportButton.setEnabled(false);
- alignStoreButton.setEnabled(false);
- serverAlignTrimButton.setEnabled(false);
-
- }
- else { //offline
- list = offAlign.getAllAlign( );
- if(list!=null) {
- localAlignIdList = new String[list.length];
- localAlignBox.removeAllItems();
-
- for(int i=0; i< list.length; i++){
- localAlignIdList[i]= list[i];
- localAlignBox.addItem(list[i]);
- }
-
- if(localAlignIdList.length > 0) {
- selectedLocalAlign = localAlignIdList[0];
- }
- }
- }
- }
- };
- });
-
- alignFindButton = new JButton("Find an alignment for ontologies", null);
- alignFindButton.setEnabled(false);
- alignFindButton.addActionListener(new ActionListener(){
- public void actionPerformed(ActionEvent e) {
- if (e.getSource() == alignFindButton) {
-
- // for connecting to server
- //onAlign = new OnlineAlign(selectedPort, selectedHost);
- if(selectedOnto1 == null || selectedOnto2 == null )
- JOptionPane.showMessageDialog(null, "Choose two ontologies from lists!","Warning",2);
- else {
-
- String[] list = onAlign.findAlignForOntos(selectedOnto1, selectedOnto2);
- if(list == null || list.length==0)
- JOptionPane.showMessageDialog(null, "No alignment is found!","Warning",2);
- else {
- //String[] list = getResultsFromAnswer(ao, "alid", null );
-
- alignIdList = new String[list.length];
- alignBox.removeAllItems();
-
- for(int i=0; i< list.length; i++){
- alignIdList[i]= list[i];
- alignBox.addItem(list[i]);
- }
-
- if(alignIdList.length > 0) {
- selectedAlign = alignIdList[0];
- }
-
- }
- }
- fetchButton.setEnabled(true);
- alignImportButton.setEnabled(false);
- alignStoreButton.setEnabled(false);
- serverAlignTrimButton.setEnabled(false);
- }
-
- };
- });
-
- serverAlignTrimButton = new JButton("Trim", null);
- serverAlignTrimButton.setEnabled(false);
- serverAlignTrimButton.addActionListener(new ActionListener(){
- public void actionPerformed(ActionEvent e) {
- if (e.getSource() == serverAlignTrimButton) {
-
- if(selectedAlign == null )
- JOptionPane.showMessageDialog(null, "Choose an alignment ID from list!","Warning",2);
- else {
- String thres = null;
-
- thres = JOptionPane.showInputDialog(null, "Enter a threshold ", "0.5");
-
- if (thres==null || thres.equals("")) return;
-
- String at = onAlign.trimAlign(selectedAlign, thres);
-
- if(at == null || at.equals(""))
- JOptionPane.showMessageDialog(null, "No alignment is obtained!","Warning",2);
- else {
-
- alignIdList = new String[1];
- alignBox.removeAllItems();
- alignIdList[0]= at;
- alignBox.addItem(at);
- selectedAlign = alignIdList[0];
- setFetchButton( true );
-
- }
- }
- }
- };
- });
-
- localAlignTrimButton = new JButton("Trim", null);
- localAlignTrimButton.setEnabled(false);
- localAlignTrimButton.addActionListener(new ActionListener(){
- public void actionPerformed(ActionEvent e) {
- if (e.getSource() == localAlignTrimButton) {
-
- if(selectedLocalAlign == null )
- JOptionPane.showMessageDialog(null, "Choose an alignment ID from list!","Warning",2);
- else {
- String thres = JOptionPane.showInputDialog(null, "Enter a threshold ", "0.5");
-
- if (thres==null || thres.equals("")) return;
-
- String resId = offAlign.trimAndExportAlign( new Double(thres), selectedLocalAlign );
-
- localAlignBox.removeAllItems();
- localAlignIdList = new String[1];
-
- localAlignIdList[0] = resId;
-
- localAlignBox.addItem( resId );
-
- selectedLocalAlign = localAlignIdList[0];
- }
-
- }
- };
- });
-
- //store an alignment on server or locally
- alignStoreButton = new JButton("Store", null);
- alignStoreButton.setEnabled(false);
- alignStoreButton.addActionListener(new ActionListener(){
- public void actionPerformed(ActionEvent e) {
- if (e.getSource() == alignStoreButton) {
-
- //for connecting to server
- //onAlign = new OnlineAlign(selectedPort, selectedHost);
- if(selectedAlign == null )
- JOptionPane.showMessageDialog(null, "Choose an alignment ID from list!","Warning",2);
- else {
-
- String sto = onAlign.storeAlign(selectedAlign);
-
- if(sto == null || sto.equals("") )
- JOptionPane.showMessageDialog(null, "Impossible connection!","Warning",2);
- else {
- alignIdList = new String[1];
- alignBox.removeAllItems();
-
- alignIdList[0]= sto;
- alignBox.addItem(sto);
-
- selectedAlign = alignIdList[0];
- JOptionPane.showMessageDialog(null, "Stored alignment : "+ sto ,"Warning",2);
- }
-
-
- }
- }
-
- };
- });
-
- ontoRefresh = new JButton("Refresh",null);
- ontoRefresh.setEnabled(false);
- ontoRefresh.addActionListener(new ActionListener(){
- public void actionPerformed(ActionEvent e) {
- if (e.getSource() == ontoRefresh) {
- onto_proj = refreshOntoList(online);
- }
- };
- });
-
- goButton = new JButton("Accept",null);
- goButton.setEnabled( true );
- goButton.addActionListener(new ActionListener(){
- public void actionPerformed(ActionEvent e) {
- if (e.getSource() == goButton) {
- wserver = serverField.getText();
- if(wserver.equals(""))
- wserver = null;
- wsmethod = methodField.getText();
- if(wsmethod.equals(""))
- wsmethod = null;
- matchDialog.dispose();
-
- resetActionButtons( false );
-
- //onAlign.getAlignId( matchMethod, wserver, wsmethod, selectedOnto1, selectedOnto2 );
-
- String alignId = onAlign.getAlignIdMonoThread( matchMethod, wserver, wsmethod, selectedOnto1, selectedOnto2 );
- //System.out.println("match from sji finished ");
- alignIdList = new String[1];
- alignIdList[0] = alignId;
- selectedAlign = alignIdList[0];
- alignBox.removeAllItems();
- alignBox.addItem(selectedAlign);
- setFetchButton( true );
-
- } // getsource
- };
- });
-
-
- mapButton = new JButton("Match",null);
- mapButton.setEnabled(false);
- mapButton.addActionListener(new ActionListener(){
- public void actionPerformed(ActionEvent e) {
- if (e.getSource() == mapButton) {
- if (selectedOnto1 == null || selectedOnto2 == null ) {
- JOptionPane.showMessageDialog(null, "Choose two ontologies from lists ","Warning",2);
- return;
- }
-
-
- if(online) {
- if (!selectedOnto1.startsWith("http://") || !selectedOnto2.startsWith("http://") ) {
- JOptionPane.showMessageDialog(null, "URLs for ontologies are required. ","Warning",2);
- return;
- }
- if( matchMethod.equals("fr.inrialpes.exmo.align.service.WSAlignment")) {
- JOptionPane pa = new JOptionPane();
- matchDialog = pa.createDialog(null, "Parameters for matching");
- matchDialog.setSize(new Dimension(400,120));
-
- Container cont = matchDialog.getContentPane();
- Component[] comps = cont.getComponents();
- for(int i=0;i< comps.length ;i++) { cont.remove(comps[i]);}
- cont.add(goButton);
- cont.add(discardButton);
-
- JPanel jPane = new JPanel (new GridLayout (3, 2, 20, 10));
-
- jPane.add(serverName); jPane.add(serverField);
- jPane.add(methodName); jPane.add(methodField);
- jPane.add(goButton);
- jPane.add(discardButton);
-
- matchDialog.setContentPane(jPane);
- matchDialog.setVisible(true);
- } else {
- resetActionButtons( false );
- String alignId = onAlign.getAlignIdMonoThread( matchMethod, wserver, wsmethod, selectedOnto1, selectedOnto2 );
- //onAlign.getAlignId( matchMethod, wserver, wsmethod, selectedOnto1, selectedOnto2 );
- alignIdList = new String[1];
- alignIdList[0] = alignId;
- selectedAlign = alignIdList[0];
- alignBox.removeAllItems();
- alignBox.addItem(selectedAlign);
- setFetchButton( true );
- }
-
- //String answer = onAlign.getAlignId( matchMethod, selectedOnto1, selectedOnto2 );
- //if(answer==null || answer.equals("")) {
- // JOptionPane.showMessageDialog(null, "Alignment is not produced.","Warning",2);
- // return;
- //}
- //alignIdList = new String[1];
- //alignIdList[0] = answer;
- //selectedAlign = alignIdList[0];
- //alignBox.removeAllItems();
- //alignBox.addItem(selectedAlign);
- //onAlign.getRDFAlignment( selectedAlign, alignImportButton, alignStoreButton,
- // serverAlignTrimButton, allAlignButton, alignFindButton, mapButton);
-
- }
- else { //offline
-
- String resId = offAlign.matchAndExportAlign( matchMethod, onto_proj.get(selectedOnto1), selectedOnto1, onto_proj.get(selectedOnto2), selectedOnto2);
-
- localAlignBox.removeAllItems();
- localAlignIdList = new String[1];
-
- //File f1 = new File(resId);
- localAlignIdList[0] = resId;//"file:" + f1.getAbsolutePath();
-
- localAlignBox.addItem(localAlignIdList[0]);
-
- selectedLocalAlign = localAlignIdList[0];
-
- //System.out.println("offline matching done. ");
- } //else for ""offline"
- } // getsource
-
- };
- });
-
- //retrieve all available onto. in Ontology Navigator
-
- ontoLabel1 = new JLabel("Ontology 1 ");
-
- ontoBox1 = new JComboBox(ontoList);
- ontoBox1.setEditable( true );
- ontoBox1.setEnabled(false);
- ontoBox1.setMaximumRowCount(20);
- ontoBox1.addItemListener(new ItemListener() {
- public void itemStateChanged(ItemEvent event) {
- if (event.getStateChange()==ItemEvent.SELECTED)
- selectedOnto1 = (String)ontoBox1.getSelectedItem();
-
- }
- });
-
- ontoLabel2 = new JLabel("Ontology 2 ");
- ontoBox2 = new JComboBox(ontoList);
- ontoBox2.setEditable( true );
- ontoBox2.setEnabled(false);
- ontoBox2.setMaximumRowCount(20);
- ontoBox2.addItemListener(new ItemListener() {
- public void itemStateChanged(ItemEvent event)
- {
- if (event.getStateChange()==ItemEvent.SELECTED)
- //id = ontoBox2.getSelectedIndex();
- selectedOnto2 = (String)ontoBox2.getSelectedItem();
- }
- });
-
- strat= new JLabel("Methods ");
- strategy = new JComboBox(methodList);
- strategy.setEnabled(false);
- strategy.setMaximumRowCount(20);
- strategy.addItemListener(new ItemListener() {
- public void itemStateChanged(ItemEvent event)
- {
- if (event.getStateChange()==ItemEvent.SELECTED)
- ind = strategy.getSelectedIndex();
- matchMethod = methodList[ind];
- }
- });
-
- this.setLayout (new BorderLayout());
- this.add (new JLabel ("Computing and managing ontology alignments"), BorderLayout.NORTH);
-
- phrases = createPhraseList( );
- phrases.setBorder(BorderFactory.createEmptyBorder (10, 5, 10, 5) );
-
- JScrollPane top = new JScrollPane( phrases );
- top.setMaximumSize(top.getPreferredSize());
- _mainSplitter.setTopComponent( top );
-
- JScrollPane html = new JScrollPane( htmlView );
- html.setMaximumSize(html.getPreferredSize());
- _mainSplitter.setBottomComponent( html );
-
- _mainSplitter.setDividerLocation((int)top.getPreferredSize().getHeight());
-
- this.add(_mainSplitter,BorderLayout.CENTER); //Main Window of the Plugin
-
- //offline is default mode
- offlineInit( true );
-
- }
-
-private JPanel createPhraseList ( ) {
- JPanel phrasePane = new JPanel (new GridLayout (0, 1, 0, 10));
-
-
- JPanel minusLabel = new JPanel (new FlowLayout(10));
- JPanel zeroLabel = new JPanel (new FlowLayout(10));
- JPanel oneLabel = new JPanel (new FlowLayout(10));
- JPanel twoLabel = new JPanel (new FlowLayout(10));
- JPanel threeLabel = new JPanel (new FlowLayout(10));
- JPanel fourLabel = new JPanel (new FlowLayout(10));
- JPanel four2Label = new JPanel (new FlowLayout(10));
- JPanel fiveLabel = new JPanel (new FlowLayout(10));
- JPanel sixLabel = new JPanel (new FlowLayout(10));
- JPanel eightLabel = new JPanel (new FlowLayout(10));
- JPanel nineLabel = new JPanel (new FlowLayout(10));
-
- minusLabel.add(onlineButton);
- minusLabel.add(offlineButton);
-
- oneLabel.add(ontoLabel1);
- oneLabel.add(ontoBox1);
-
-
- twoLabel.add(ontoLabel2);
- twoLabel.add(ontoBox2);
-
- twoLabel.add(ontoRefresh);
-
- threeLabel.add(strat);
- threeLabel.add(strategy);
-
- threeLabel.add(mapButton);
-
- fourLabel.add(alignLabel);
- fourLabel.add(alignBox);
- //fourLabel.add(fetchButton);
- fourLabel.add(alignImportButton);
- fourLabel.add(serverAlignTrimButton);
- fourLabel.add(alignStoreButton);
- fourLabel.add(fetchButton);
-
- four2Label.add(localAlignLabel);
- four2Label.add(localAlignBox);
- four2Label.add(localAlignImportButton);
- four2Label.add(localAlignTrimButton);
- four2Label.add(alignUploadButton);
-
- fiveLabel.add(alignFindButton);
- nineLabel.add(allAlignButton);
- //label_three.add(resButton);
- phrasePane.add(minusLabel);
- //phrasePane.add(zeroLabel);
-
- phrasePane.add(oneLabel);
- phrasePane.add(twoLabel);
- phrasePane.add(threeLabel);
- phrasePane.add(fourLabel);
- phrasePane.add(four2Label);
- phrasePane.add(nineLabel);
- phrasePane.add(fiveLabel);
-
- return phrasePane;
-
- }
-
-//This function fetches all URL ontologies
-private HashMap<String,String> refreshOntoList(boolean online) {
- HashMap<String,String> vec = new HashMap<String,String>();
- OWLAPIOntologyFactory fact = new OWLAPIOntologyFactory();
- try {
- String[] projects = DatamodelPlugin.getDefault().getOntologyProjects();
- if(projects != null) {
- for(int i=0; i < projects.length; i++) {
- if(projects[i]!=null) {
- //URI[] uris= DatamodelPlugin.getDefault().getProjectOntologyFiles(projects[i]);
- //Kaon2Connection connection = DatamodelPlugin.getDefault().getKaon2Connection(projects[i]);
- //version 15 May
- OntologyManager connection = DatamodelPlugin.getDefault().getKaon2Connection(projects[i]);
- Set<String> strSet = connection.getAvailableOntologyURIs();
- String[] uris = (String[])strSet.toArray(new String[0]);
- if(online) {
- for(int k=0; k < uris.length; k++) {
- //get only http URL
- if(uris[k].startsWith("http://"))
- try {
- fact.loadOntology(new URI(uris[k]));
- vec.put(uris[k],projects[i]);
- } catch (Exception ex) {
- }
- }
- } else {
- for(int k=0; k < uris.length; k++) {
- vec.put(DatamodelPlugin.getDefault().getPhysicalOntologyUri(projects[i], uris[k]).toString(),projects[i]);
- }
- }
- }
- }
- }
- else {
- //System.out.printf("No Ontology Project !" );
- return null;
- }
- } catch ( Exception ex ) { ex.printStackTrace();};
-
- ontoBox1.removeAllItems();
- ontoBox2.removeAllItems();
-
- String[] keys = (String[]) vec.keySet().toArray(new String[0]);
-
- ontoList = new String[ keys.length ];
-
- for(int j=0; j < keys.length; j++) {
-
- ontoBox1.addItem(keys[j]);
- ontoBox2.addItem(keys[j]);
- ontoList[j] = keys[j];
-
- if(ontoList.length > 0) {
- selectedOnto1 = ontoList[0];
- selectedOnto2 = ontoList[0];
- }
-
- }
- return vec;
-}
-
- public void run() {
-
- initialize();
- }
-
-
- public static String[] getResultsFromAnswer( String answer, String type , String separator) {
- Document doc=null;
- String[] names=null;
- //File message=null;
- //System.out.println( "displaying XML ..." );
- answer = "<?xml version=\"1.0\" encoding=\"UTF-8\"?>" + answer;
- //System.out.println( answer );
- try {
- File messageFile = new File(basicFolder.getAbsolutePath() + basicFolder.separator + "messageFile");
- FileWriter out = new FileWriter(messageFile);
- out.write( answer );
- out.close();
-
- } catch (Exception e) {
- //compilerError(Compiler.XML, e.getMessage());
- }
-
- try {
- //System.out.println( "Parsing for getting result: "+ type +" ... ");
- doc = parse(new File(basicFolder.getAbsolutePath() + basicFolder.separator + "messageFile"));
-
- Element e = doc.getDocumentElement();
-
- NodeList methods = e.getElementsByTagName(type);
- names = new String[methods.getLength()];
- //System.out.println( "length="+ methods.getLength());
-
-
- for (int i=0; i< methods.getLength(); i++) {
- Node method = (Node) methods.item(i);
- //String nm = method.getAttribute("NAME");
- Node firstnode = method.getFirstChild();
- String nm = firstnode.getNodeValue();
- //System.out.println( "nm="+nm );
- if(nm!=null) {
- if(separator!=null)
- names[i]=nm.substring(nm.lastIndexOf(separator)+1,nm.length());
- else
- names[i]=nm;
- //System.out.println( "name="+names[i] );
- }
- }
-
-
-
- } catch (Exception e) {
- //compilerError(Compiler.XML, e.getMessage());
- //System.out.println("getValue="+e.getMessage());
- }
- return names;
- //System.out.println( answer );
- }
-
- public static Vector<String[]> getCorresFromAnswer( Alignment align ) {
-
- ArrayList<Cell> cells = ((BasicAlignment)align).getArrayElements();
- Vector<String[]> names = new Vector<String[]>(cells.size() + 1 );
-
- String[] corr = new String[4];
- corr[0] = "Object1";
-
- corr[1] = "Relation";
- corr[2] = "Strength";
- corr[3] = "Object2";
-
- names.add(corr);
-
- for(int i=0; i<cells.size(); i++) {
- try {
-
- corr = new String[4];
-
- corr[0] = ((BasicCell)cells.get(i)).getObject1().toString();
- //by default : equivalence
-
- //corr[1] = cells.get(i).getRelation().toString();
- corr[1] = "=";
- corr[2] = (new Double(cells.get(i).getStrength())).toString();
- corr[3] = ((BasicCell)cells.get(i)).getObject2().toString();
- names.add(corr);
-
- }catch (Exception ex) { ex.printStackTrace(); }
-
- }
- return names;
-
- }
-
- public static Vector<String[]> getCorresFromAnswer( String answer, String type ,String separator) {
- Document doc=null;
- Vector<String[]> names = new Vector<String[]>();
- //File message=null;
- //System.out.println( "displaying XML ..." );
- answer = "<?xml version=\"1.0\" encoding=\"UTF-8\"?>" + answer;
- //System.out.println( answer );
- try {
- File messageFile = new File(basicFolder.getAbsolutePath() + File.separator + "messageFile");
- FileWriter out = new FileWriter(messageFile);
- out.write( answer );
- out.close();
-
- } catch (Exception e) {
- //compilerError(Compiler.XML, e.getMessage());
- }
-
- try {
- //System.out.println( "parsing ... ");
- doc = parse(new File(basicFolder.getAbsolutePath() + File.separator + "messageFile"));
- Element e = doc.getDocumentElement();
- NodeList m = e.getElementsByTagName("table");
- Element cor = (Element)m.item(1);
- NodeList methods = cor.getElementsByTagName(type);
-
- //System.out.println( "length lines ="+ methods.getLength());
-
-
- for (int i=0; i< methods.getLength(); i++) {
- Element lns = (Element) methods.item(i);
- //String nm = method.getAttribute("NAME");
- NodeList cols = lns.getElementsByTagName("td");
-
- //System.out.println( "length cols=" + cols.getLength());
-
- String[] tt = (String[]) new String[cols.getLength()];
-
- for (int j=0; j< cols.getLength(); j++) {
- Node col = (Node) cols.item(j);
- //String nm = method.getAttribute("NAME");
-
- Node firstnode = col.getFirstChild();
- String nm=null;
-
- if(firstnode!=null) {
- nm = firstnode.getNodeValue();
-
- if(nm!=null) {
-
- if(separator!=null)
- if (nm.lastIndexOf(separator) > 0 && nm.lastIndexOf(separator) < nm.length()-1)
- tt[j] = nm.substring(nm.lastIndexOf(separator)+1,nm.length());
- else tt[j] = nm;
- else
- tt[j] = nm;
- //System.out.println( "name="+tt[j] );
- }
- }
-
- }
- names.add(tt);
- }
-
- } catch (Exception e) {
- //compilerError(Compiler.XML, e.getMessage());
- //System.out.println("Error="+e.getMessage() + "xml parser prob.");
- }
-
-
- return names;
-
- }
-
- private static Document parse(File f) throws Exception {
- try {
- String uri = f.toURL().toString();
- return parse(uri);
- } catch (MalformedURLException ex) {
- //compilerError(Compiler.FILE, ex.getMessage());
- }
- return null;
- }
-
- private static Document parse(String uri) throws Exception {
- org.w3c.dom.Document doc = null;
- try {
- javax.xml.parsers.DocumentBuilderFactory dbf =
- javax.xml.parsers.DocumentBuilderFactory.newInstance();
- dbf.setValidating(false);
- javax.xml.parsers.DocumentBuilder builder = dbf.newDocumentBuilder();
- doc = builder.parse(uri);
- } catch (Exception e) {
- //compilerError(Compiler.XML, e.getMessage());
- }
- return doc;
- }
-
-}
-
-
diff --git a/plugins/neon/src/fr/inrialpes/exmo/align/plugin/neontk/View.java b/plugins/neon/src/fr/inrialpes/exmo/align/plugin/neontk/View.java
deleted file mode 100755
index aa3aca238f796efde38cf66224975ceb289369de..0000000000000000000000000000000000000000
--- a/plugins/neon/src/fr/inrialpes/exmo/align/plugin/neontk/View.java
+++ /dev/null
@@ -1,49 +0,0 @@
-/*
- * $Id$
- *
- * Copyright (C) INRIA, 2007-2008
- *
- * This program is free software; you can redistribute it and/or modify
- * it under the terms of the GNU Lesser General Public License as published by
- * the Free Software Foundation; either version 2.1 of the License, or
- * (at your option) any later version.
- *
- * This program is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU Lesser General Public License for more details.
- *
- * You should have received a copy of the GNU Lesser General Public License
- * along with this program; if not, write to the Free Software
- * Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
- */
-
-package fr.inrialpes.exmo.align.plugin.neontk;
-
-import org.eclipse.swt.SWT;
-import org.eclipse.swt.widgets.Composite;
-import org.eclipse.ui.part.ViewPart;
-import org.eclipse.swt.awt.SWT_AWT;
-import java.awt.BorderLayout;
-import javax.swing.JPanel;
-import java.awt.Frame;
-
-public class View extends ViewPart {
-
- public static final String ID = "fr.inrialpes.exmo.align.plugin.neontk.view";
-
- public void setFocus() {
- }
-
- public void createPartControl(Composite parent) {
- final Composite composite = new Composite(parent, SWT.EMBEDDED);
- final Frame f = SWT_AWT.new_Frame(composite);
-
- JPanel panel = new JPanel(new BorderLayout());
- f.add(panel);
- SWTInterface lo= new SWTInterface();
- lo.run();
- f.add(lo);
- }
-
-}
diff --git a/plugins/neon/src/fr/inrialpes/exmo/align/plugin/neontk/WSDialog.java b/plugins/neon/src/fr/inrialpes/exmo/align/plugin/neontk/WSDialog.java
index c6505a89ff81085063ac95e357cb533d7dfbaecb..708bfa1f60d502041951fedd75afc4eb0446ce45 100644
--- a/plugins/neon/src/fr/inrialpes/exmo/align/plugin/neontk/WSDialog.java
+++ b/plugins/neon/src/fr/inrialpes/exmo/align/plugin/neontk/WSDialog.java
@@ -104,7 +104,9 @@ public class WSDialog extends Dialog {
GridData data = new GridData();
data.horizontalSpan = 6;
label.setLayoutData(data);
-
+
+ Label serverLabel = new Label(shell, SWT.NONE);
+ serverLabel.setText("Server: ");
// Display the input box for server
final Text server = new Text(shell, SWT.BORDER);
server.setText("http://kameleon.ijs.si/ontolight/ontolight.asmx");
@@ -112,6 +114,8 @@ public class WSDialog extends Dialog {
data.horizontalSpan = 6;
server.setLayoutData(data);
+ Label methodLabel = new Label(shell, SWT.NONE);
+ methodLabel.setText("Method: ");
// Display the input box for method
final Text wsmethod = new Text(shell, SWT.BORDER);
//text.setText("");