From 5cbcac2b7df52d4f6e48881d585a8d0a16455788 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?J=C3=A9r=C3=B4me=20Euzenat?= <Jerome.Euzenat@inria.fr>
Date: Thu, 19 May 2005 08:44:56 +0000
Subject: [PATCH] - introduced parameters reading in basic parameters (from
Vison) - added option for reading parameter files in Procalign
---
lib/procalign.jar | Bin 86285 -> 87202 bytes
.../exmo/align/impl/BasicParameters.java | 60 ++++++++++++++++--
.../inrialpes/exmo/align/util/Procalign.java | 44 ++++++++-----
3 files changed, 84 insertions(+), 20 deletions(-)
diff --git a/lib/procalign.jar b/lib/procalign.jar
index 14c03f07cc3d981fa5f157d2b647195e5e1eb977..4592a6f29e3c6e8d2695b5839cdfc8c91cb5ba06 100644
GIT binary patch
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diff --git a/src/fr/inrialpes/exmo/align/impl/BasicParameters.java b/src/fr/inrialpes/exmo/align/impl/BasicParameters.java
index 2cd41c23..54f180fc 100644
--- a/src/fr/inrialpes/exmo/align/impl/BasicParameters.java
+++ b/src/fr/inrialpes/exmo/align/impl/BasicParameters.java
@@ -1,7 +1,8 @@
/*
* $Id$
*
- * Copyright (C) INRIA Rhône-Alpes, 2004
+ * Copyright (C) INRIA Rhône-Alpes, 2004-2005
+ * Copyright (C) University of Montréal, 2004
*
* This program is free software; you can redistribute it and/or
* modify it under the terms of the GNU Lesser General Public License
@@ -24,6 +25,19 @@ package fr.inrialpes.exmo.align.impl;
// import java classes
import java.util.Hashtable;
import java.util.Enumeration;
+import java.io.PrintStream;
+import java.io.File;
+
+import org.w3c.dom.Document;
+import org.w3c.dom.Node;
+import org.w3c.dom.NodeList;
+import org.w3c.dom.Element;
+
+import javax.xml.parsers.DocumentBuilderFactory;
+import javax.xml.parsers.DocumentBuilder;
+
+import org.xml.sax.SAXException;
+import org.xml.sax.SAXParseException;
import org.semanticweb.owl.align.Parameters;
@@ -68,11 +82,49 @@ public class BasicParameters implements Parameters {
System.out.println("</Parameters>");
}
+ /**
+ * displays the current parameters (debugging)
+ */
+ public void displayParameters( PrintStream stream ){
+ stream.println("Parameters:");
+ for (Enumeration e = parameters.keys(); e.hasMoreElements();) {
+ String k = (String)e.nextElement();
+ stream.println(" "+k+" = "+parameters.get(k));
+ }
+ }
+
public static Parameters read(){
Parameters p = new BasicParameters();
- // open the stream
- // parse it
- // fill the structure
+ String filename = "params.xml";
+
+ try {
+ // open the stream
+ DocumentBuilderFactory docBuilderFactory =
+ DocumentBuilderFactory.newInstance();
+ DocumentBuilder docBuilder = docBuilderFactory.newDocumentBuilder();
+ Document doc = docBuilder.parse(new File(filename));
+
+ // normalize text representation
+ doc.getDocumentElement().normalize();
+
+ // Get the params
+ NodeList paramList = doc.getElementsByTagName("param");
+ int totalParams = paramList.getLength();
+ for (int s = 0; s < totalParams; s++) {
+ Element paramElement = (Element)paramList.item(s);
+ String paramName = paramElement.getAttribute("name");
+ NodeList paramContent = paramElement.getChildNodes();
+ String paramValue =((Node)paramContent.item(0)).getNodeValue().trim();
+ p.setParameter(paramName, paramValue);
+ }
+ } catch (SAXParseException err) {
+ System.err.println("** Parsing error: ["+ err.getLineNumber()+"]: "+err.getSystemId());
+ System.err.println(" " + err.getMessage());
+ } catch (SAXException e) {
+ Exception x = e.getException();
+ ((x == null) ? e : x).printStackTrace();
+ } catch (Throwable t) { t.printStackTrace(); }
+
return p;
}
}
diff --git a/src/fr/inrialpes/exmo/align/util/Procalign.java b/src/fr/inrialpes/exmo/align/util/Procalign.java
index 47ce7aaf..7d24ad16 100644
--- a/src/fr/inrialpes/exmo/align/util/Procalign.java
+++ b/src/fr/inrialpes/exmo/align/util/Procalign.java
@@ -84,6 +84,7 @@ import fr.inrialpes.exmo.align.parser.AlignmentParser;
where the options are:
<pre>
--alignment=filename -a filename Start from an XML alignment file
+ --params=filename -p filename Read the parameters in file
--debug[=n] -d [n] Report debug info at level n,
--output=filename -o filename Output the alignment in filename
--impl=className -i classname Use the given alignment implementation.
@@ -123,6 +124,7 @@ public class Procalign {
Alignment init = null;
String alignmentClassName = "fr.inrialpes.exmo.align.impl.method.ClassNameEqAlignment";
String filename = null;
+ String paramfile = null;
String rendererClass = "fr.inrialpes.exmo.align.impl.renderer.RDFRendererVisitor";
//PrintStream writer = null;
PrintWriter writer = null;
@@ -131,7 +133,7 @@ public class Procalign {
double threshold = 0;
Parameters params = new BasicParameters();
- LongOpt[] longopts = new LongOpt[9];
+ LongOpt[] longopts = new LongOpt[10];
longopts[0] = new LongOpt("help", LongOpt.NO_ARGUMENT, null, 'h');
longopts[1] = new LongOpt("output", LongOpt.REQUIRED_ARGUMENT, null, 'o');
@@ -141,10 +143,11 @@ public class Procalign {
longopts[5] = new LongOpt("impl", LongOpt.REQUIRED_ARGUMENT, null, 'i');
longopts[6] = new LongOpt("threshold", LongOpt.REQUIRED_ARGUMENT, null, 't');
longopts[7] = new LongOpt("cutmethod", LongOpt.REQUIRED_ARGUMENT, null, 'T');
+ longopts[8] = new LongOpt("params", LongOpt.REQUIRED_ARGUMENT, null, 'p');
// Is there a way for that in LongOpt ???
- longopts[8] = new LongOpt("D", LongOpt.REQUIRED_ARGUMENT, null, 'D');
+ longopts[9] = new LongOpt("D", LongOpt.REQUIRED_ARGUMENT, null, 'D');
- Getopt g = new Getopt("", args, "ho:a:d::r:t:T:i:D::", longopts);
+ Getopt g = new Getopt("", args, "ho:a:p:d::r:t:T:i:D::", longopts);
int c;
String arg;
@@ -154,9 +157,13 @@ public class Procalign {
usage();
return null;
case 'o' :
- /* Write warnings to stdout rather than stderr */
+ /* Use filename instead of stdout */
filename = g.getOptarg();
break;
+ case 'p' :
+ /* Read parameters from filename */
+ paramfile = g.getOptarg();
+ break;
case 'r' :
/* Use the given class for rendering */
rendererClass = g.getOptarg();
@@ -202,6 +209,10 @@ public class Procalign {
int i = g.getOptind();
+ // Read the param file here
+ // This should include redirecting input + this should be before
+ if ( paramfile != null ) params = (Parameters)BasicParameters.read();
+
loadedOntologies = new Hashtable();
if (debug > 0) params.setParameter("debug", new Integer(debug));
// debug = ((Integer)params.getParameter("debug")).intValue();
@@ -233,7 +244,7 @@ public class Procalign {
throw new SAXException(message.toString());
}
public void warning(String message) throws SAXException {
- System.out.println("WARNING: " + message);
+ System.err.println("WARNING: " + message);
}
};
@@ -322,16 +333,17 @@ public class Procalign {
}
public static void usage() {
- System.out.println("usage: Procalign [options] URI1 URI2");
- System.out.println("options are:");
- System.out.println("\t--impl=className -i classname\t\tUse the given alignment implementation.");
- System.out.println("\t--renderer=className -r className\tSpecifies the alignment renderer");
- System.out.println("\t--output=filename -o filename\tOutput the alignment in filename");
- System.out.println("\t--alignment=filename -a filename Start from an XML alignment file");
- System.out.println("\t--threshold=double -t double\tFilters the similarities under threshold");
- System.out.println("\t--cutmethod=hard|perc|prop|best|span -T hard|perc|prop|best|span\tmethod for computing the threshold");
- System.out.println("\t--debug[=n] -d [n]\t\tReport debug info at level n");
- System.out.println("\t-Dparam=value\t\t\tSet parameter");
- System.out.println("\t--help -h\t\t\tPrint this message");
+ System.err.println("usage: Procalign [options] URI1 URI2");
+ System.err.println("options are:");
+ System.err.println("\t--impl=className -i classname\t\tUse the given alignment implementation.");
+ System.err.println("\t--renderer=className -r className\tSpecifies the alignment renderer");
+ System.err.println("\t--output=filename -o filename\tOutput the alignment in filename");
+ System.err.println("\t--params=filename -p filename\tReads parameters from filename");
+ System.err.println("\t--alignment=filename -a filename Start from an XML alignment file");
+ System.err.println("\t--threshold=double -t double\tFilters the similarities under threshold");
+ System.err.println("\t--cutmethod=hard|perc|prop|best|span -T hard|perc|prop|best|span\tmethod for computing the threshold");
+ System.err.println("\t--debug[=n] -d [n]\t\tReport debug info at level n");
+ System.err.println("\t-Dparam=value\t\t\tSet parameter");
+ System.err.println("\t--help -h\t\t\tPrint this message");
}
}
--
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