diff --git a/src/fr/inrialpes/exmo/align/impl/eval/ExtPREvaluator.java b/src/fr/inrialpes/exmo/align/impl/eval/ExtPREvaluator.java
index 1fdb3e4f3f784e68e8eb585adf3734a4a54c181b..7d495272843c9122386a9a0e3012d18a22aafbb3 100644
--- a/src/fr/inrialpes/exmo/align/impl/eval/ExtPREvaluator.java
+++ b/src/fr/inrialpes/exmo/align/impl/eval/ExtPREvaluator.java
@@ -1,7 +1,7 @@
/*
* $Id$
*
- * Copyright (C) INRIA Rhône-Alpes, 2004-2008
+ * Copyright (C) INRIA, 2004-2008
*
* This program is free software; you can redistribute it and/or modify
* it under the terms of the GNU Lesser General Public License as published by
@@ -29,6 +29,7 @@ import fr.inrialpes.exmo.align.impl.BasicEvaluator;
import fr.inrialpes.exmo.align.impl.ObjectAlignment;
import fr.inrialpes.exmo.align.onto.HeavyLoadedOntology;
import fr.inrialpes.exmo.align.onto.LoadedOntology;
+import fr.inrialpes.exmo.align.onto.OntologyFactory;
import java.util.Enumeration;
import java.util.Iterator;
@@ -57,12 +58,12 @@ public class ExtPREvaluator extends BasicEvaluator {
//private double editBETA = .6;
//private double oriented = .5;
- private double symprec = 0.;
- private double symrec = 0.;
- private double effprec = 0.;
- private double effrec = 0.;
- private double orientprec = 0.;
- private double orientrec = 0.;
+ private double symprec = 1.;
+ private double symrec = 1.;
+ private double effprec = 1.;
+ private double effrec = 1.;
+ private double orientprec = 1.;
+ private double orientrec = 1.;
private int nbexpected = 0;
private int nbfound = 0;
@@ -77,15 +78,15 @@ public class ExtPREvaluator extends BasicEvaluator {
}
public double getSymPrecision() { return symprec; }
- public double getSymRecall() { return symrec; }
+ public double getSymRecall() { return symrec; }
public double getSymSimilarity() { return symsimilarity; }
public double getEffPrecision() { return effprec; }
- public double getEffRecall() { return effrec; }
+ public double getEffRecall() { return effrec; }
public double getEffSimilarity() { return effsimilarity; }
public double getOrientPrecision() { return orientprec; }
- public double getOrientRecall() { return orientrec; }
+ public double getOrientRecall() { return orientrec; }
public double getOrientSimilarity() { return orientsimilarity; }
public int getExpected() { return nbexpected; }
@@ -142,14 +143,14 @@ public class ExtPREvaluator extends BasicEvaluator {
// nbexpected is 0 [=> nbcorrect is 0] (r=NaN, p=0[if nbfound>0, NaN otherwise])
// precision+recall is 0 [= nbcorrect is 0]
// precision is 0 [= nbcorrect is 0]
- symprec = symsimilarity / (double) nbfound;
- symrec = symsimilarity / (double) nbexpected;
+ if ( nbfound != 0 ) symprec = symsimilarity / (double) nbfound;
+ if ( nbexpected != 0 ) symrec = symsimilarity / (double) nbexpected;
effsimilarity = symsimilarity;
- effprec = effsimilarity / (double) nbfound;
- effrec = effsimilarity / (double) nbexpected;
+ if ( nbfound != 0 ) effprec = effsimilarity / (double) nbfound;
+ if ( nbexpected != 0 ) effrec = effsimilarity / (double) nbexpected;
orientsimilarity = symsimilarity;
- orientprec = orientsimilarity / (double) nbfound;
- orientrec = orientsimilarity / (double) nbexpected;
+ if ( nbfound != 0 ) orientprec = orientsimilarity / (double) nbfound;
+ if ( nbexpected != 0 ) orientrec = orientsimilarity / (double) nbexpected;
//System.err.println(">>>> " + nbcorrect + " : " + nbfound + " : " + nbexpected);
return (result);
}
@@ -195,7 +196,7 @@ public class ExtPREvaluator extends BasicEvaluator {
}
public boolean isSuperProperty( Object prop1, Object prop2, HeavyLoadedOntology<Object> ontology ) throws AlignmentException {
- return ontology.getSuperProperties( prop2, true, true, true ).contains( prop1 );
+ return ontology.getSuperProperties( prop2, OntologyFactory.ANY, OntologyFactory.ANY, OntologyFactory.ANY ).contains( prop1 );
}
@@ -218,7 +219,7 @@ public class ExtPREvaluator extends BasicEvaluator {
public int isSuperClass( Object class1, Object class2, HeavyLoadedOntology<Object> ontology ) throws AlignmentException {
URI uri1 = ontology.getEntityURI( class1 );
Set<Object> bufferedSuperClasses = null;
- Set<Object> superclasses = ontology.getSuperClasses( class1, true, true, true );
+ Set<Object> superclasses = ontology.getSuperClasses( class1, OntologyFactory.ANY, OntologyFactory.ANY, OntologyFactory.ANY );
int level = 0;
while ( !superclasses.isEmpty() ){
@@ -232,9 +233,7 @@ public class ExtPREvaluator extends BasicEvaluator {
if ( uri1.toString().equals(uri2.toString()) ) {
return level;
} else {
- // [W:unchecked] due to OWL API not serving generic types
- //superclasses.addAll(((OWLClass)entity).getSuperClasses( ontology )); // [W:unchecked]
- superclasses.addAll( ontology.getSuperClasses( entity, true, true, true ) );
+ superclasses.addAll( ontology.getSuperClasses( entity, OntologyFactory.ANY, OntologyFactory.ANY, OntologyFactory.ANY ) );
}
}
}
diff --git a/src/fr/inrialpes/exmo/align/impl/method/NameAndPropertyAlignment.java b/src/fr/inrialpes/exmo/align/impl/method/NameAndPropertyAlignment.java
index 2a1896d832a6ecba76dbf37839986afe7e8900d9..7597c50c9488b3cc9753aa127dab82accabba146 100644
--- a/src/fr/inrialpes/exmo/align/impl/method/NameAndPropertyAlignment.java
+++ b/src/fr/inrialpes/exmo/align/impl/method/NameAndPropertyAlignment.java
@@ -1,7 +1,7 @@
/*
* $Id$
*
- * Copyright (C) INRIA Rhône-Alpes, 2003-2004, 2007-2008
+ * Copyright (C) INRIA, 2003-2004, 2007-2008
*
* This program is free software; you can redistribute it and/or modify
* it under the terms of the GNU Lesser General Public License as published by
@@ -32,6 +32,7 @@ import org.semanticweb.owl.align.Parameters;
import fr.inrialpes.exmo.align.impl.DistanceAlignment;
import fr.inrialpes.exmo.align.onto.HeavyLoadedOntology;
+import fr.inrialpes.exmo.align.onto.OntologyFactory;
/** This class has been built for ISWC experiments with bibliography.
* It implements a non iterative (one step) OLA algorithms based on
@@ -186,13 +187,13 @@ public class NameAndPropertyAlignment extends DistanceAlignment implements Align
// / nbatts of c[i] + nbatts of c[j]
for ( i=0; i<nbclass1; i++ ){
- Set<Object> properties1 = honto1.getProperties( classlist1.get(i), true, true, true );
+ Set<Object> properties1 = honto1.getProperties( classlist1.get(i), OntologyFactory.ANY, OntologyFactory.ANY, OntologyFactory.ANY );
int nba1 = properties1.size();
if ( nba1 > 0 ) { // if not, keep old values...
//Set correspondences = new HashSet();
for ( j=0; j<nbclass2; j++ ){
- Set<Object> properties2 = honto2.getProperties( classlist2.get(j), true, true, true );
+ Set<Object> properties2 = honto2.getProperties( classlist2.get(j), OntologyFactory.ANY, OntologyFactory.ANY, OntologyFactory.ANY );
//int nba2 = properties1.size();
//double attsum = 0.;
// check that there is a correspondance
diff --git a/src/fr/inrialpes/exmo/align/impl/method/StrucSubsDistAlignment.java b/src/fr/inrialpes/exmo/align/impl/method/StrucSubsDistAlignment.java
index 949cda10e5ddd570761348e5657e5a2d200a774f..9bcd057aefc3165646953b4e59b8419f9457d763 100644
--- a/src/fr/inrialpes/exmo/align/impl/method/StrucSubsDistAlignment.java
+++ b/src/fr/inrialpes/exmo/align/impl/method/StrucSubsDistAlignment.java
@@ -1,7 +1,7 @@
/*
* $Id$
*
- * Copyright (C) INRIA Rhône-Alpes, 2003-2004, 2007-2008
+ * Copyright (C) INRIA, 2003-2004, 2007-2008
*
* This program is free software; you can redistribute it and/or modify
* it under the terms of the GNU Lesser General Public License as published by
@@ -33,6 +33,7 @@ import org.semanticweb.owl.align.Parameters;
import fr.inrialpes.exmo.align.impl.DistanceAlignment;
import fr.inrialpes.exmo.align.onto.HeavyLoadedOntology;
+import fr.inrialpes.exmo.align.onto.OntologyFactory;
/** This class has been built for ISWC experiments with bibliography.
* It implements a non iterative (one step) OLA algorithms based on
@@ -188,12 +189,12 @@ public class StrucSubsDistAlignment extends DistanceAlignment implements Alignme
// (sigma (att in c[i]) getAllignCell... )
// / nbatts of c[i] + nbatts of c[j]
for ( i=0; i<nbclass1; i++ ){
- Set<Object> properties1 = honto1.getProperties( classlist1.get(i), true, true, true );
+ Set<Object> properties1 = honto1.getProperties( classlist1.get(i), OntologyFactory.ANY, OntologyFactory.ANY, OntologyFactory.ANY );
int nba1 = properties1.size();
if ( nba1 > 0 ) { // if not, keep old values...
//Set correspondences = new HashSet();
for ( j=0; j<nbclass2; j++ ){
- Set<Object> properties2 = honto2.getProperties( classlist2.get(j), true, true, true );
+ Set<Object> properties2 = honto2.getProperties( classlist2.get(j), OntologyFactory.ANY, OntologyFactory.ANY, OntologyFactory.ANY );
int nba2 = properties2.size();
double attsum = 0.;
// check that there is a correspondance
diff --git a/src/fr/inrialpes/exmo/align/onto/HeavyLoadedOntology.java b/src/fr/inrialpes/exmo/align/onto/HeavyLoadedOntology.java
index 8aabbc4a739a08a1f0a2fb38b0f9482b3f5a2946..f750fe0a4637e2c06028a6309ca48c3638e0c5c2 100644
--- a/src/fr/inrialpes/exmo/align/onto/HeavyLoadedOntology.java
+++ b/src/fr/inrialpes/exmo/align/onto/HeavyLoadedOntology.java
@@ -1,7 +1,7 @@
/*
* $Id$
*
- * Copyright (C) INRIA Rhône-Alpes, 2008
+ * Copyright (C) INRIA, 2008
*
* This program is free software; you can redistribute it and/or modify
* it under the terms of the GNU Lesser General Public License as published by
@@ -33,21 +33,24 @@ import org.semanticweb.owl.align.AlignmentException;
*/
public interface HeavyLoadedOntology<O> extends LoadedOntology<O> {
+ /* Capability methods */
+ public boolean getCapabilities( int Direct, int Asserted, int Named );
+
/* Class methods */
- public Set<Object> getSubClasses( Object c, boolean local, boolean asserted, boolean named );
- public Set<Object> getSuperClasses( Object c, boolean local, boolean asserted, boolean named );
- public Set<Object> getProperties( Object c, boolean local, boolean asserted, boolean named );
- public Set<Object> getDataProperties( Object c, boolean local, boolean asserted, boolean named );
- public Set<Object> getObjectProperties( Object c, boolean local, boolean asserted, boolean named );
- public Set<Object> getInstances( Object c, boolean local, boolean asserted, boolean named );
+ public Set<Object> getSubClasses( Object c, int local, int asserted, int named );
+ public Set<Object> getSuperClasses( Object c, int local, int asserted, int named );
+ public Set<Object> getProperties( Object c, int local, int asserted, int named );
+ public Set<Object> getDataProperties( Object c, int local, int asserted, int named );
+ public Set<Object> getObjectProperties( Object c, int local, int asserted, int named );
+ public Set<Object> getInstances( Object c, int local, int asserted, int named );
/* Property methods */
- public Set<Object> getSubProperties( Object p, boolean local, boolean asserted, boolean named );
- public Set<Object> getSuperProperties( Object p, boolean local, boolean asserted, boolean named );
+ public Set<Object> getSubProperties( Object p, int local, int asserted, int named );
+ public Set<Object> getSuperProperties( Object p, int local, int asserted, int named );
public Set<Object> getRange( Object p, boolean asserted );
public Set<Object> getDomain( Object p, boolean asserted );
/* Individual methods */
- public Set<Object> getClasses( Object i, boolean local, boolean asserted, boolean named );
+ public Set<Object> getClasses( Object i, int local, int asserted, int named );
}
diff --git a/src/fr/inrialpes/exmo/align/onto/OntologyFactory.java b/src/fr/inrialpes/exmo/align/onto/OntologyFactory.java
index b0528556d358522c296b4a5bea1fbc144310f2cf..4548e3d937aab7e303a6c6ec2f62e0e8eb2daebb 100644
--- a/src/fr/inrialpes/exmo/align/onto/OntologyFactory.java
+++ b/src/fr/inrialpes/exmo/align/onto/OntologyFactory.java
@@ -29,6 +29,20 @@ import org.semanticweb.owl.align.AlignmentException;
public abstract class OntologyFactory {
+ public static int ANY = 0;
+ public static int DIRECT = 1;
+ public static int INDIRECT = 2;
+ public static int ASSERTED = 3;
+ public static int UNASSERTED = 4;
+ public static int INHERITED = 5;
+ public static int FULL = 6;
+ public static int NAMED = 7;
+ public static int LOCAL = 8;
+ public static int GLOBAL = 9;
+ public static int UNNAMED = 10;
+ public static int MENTIONNED = 11;
+ public static int ALL = 12;
+
//protected static OntologyFactory instance = null;
protected static Hashtable<String,OntologyFactory> instances = null;
diff --git a/src/fr/inrialpes/exmo/align/onto/owlapi10/OWLAPIOntology.java b/src/fr/inrialpes/exmo/align/onto/owlapi10/OWLAPIOntology.java
index 7da82f6436a21e659a845dfbd06f4b4e927122d0..f53a649f73657d77ba44011584cc98e9ae176f18 100644
--- a/src/fr/inrialpes/exmo/align/onto/owlapi10/OWLAPIOntology.java
+++ b/src/fr/inrialpes/exmo/align/onto/owlapi10/OWLAPIOntology.java
@@ -41,11 +41,13 @@ import java.util.HashSet;
import org.semanticweb.owl.align.AlignmentException;
-import fr.inrialpes.exmo.align.onto.LoadedOntology;
+import fr.inrialpes.exmo.align.onto.OntologyFactory;
+import fr.inrialpes.exmo.align.onto.HeavyLoadedOntology;
import fr.inrialpes.exmo.align.onto.BasicOntology;
import org.semanticweb.owl.io.vocabulary.RDFSVocabularyAdapter;
import org.semanticweb.owl.model.OWLAnnotationInstance;
+import org.semanticweb.owl.model.OWLDataType;
import org.semanticweb.owl.model.OWLDataValue;
import org.semanticweb.owl.model.OWLOntology;
import org.semanticweb.owl.model.OWLProperty;
@@ -63,19 +65,20 @@ import org.semanticweb.owl.model.OWLObjectAllRestriction;
import org.semanticweb.owl.model.OWLException;
import org.semanticweb.owl.model.helper.OWLEntityCollector;
-/*
- * JE: BEWARE, THIS HAS NOT BEEN FULLY IMPLEMENTED SO FAR!!!!
- * TO BE CHECKED
- * getEntities() and getProperties() ARE INCORRECT
- * nbXxxx() ARE INNEFICIENT
- */
-
/**
* Store the information regarding ontologies in a specific structure
* Acts as an interface with regard to an ontology APY
*/
-public class OWLAPIOntology extends BasicOntology<OWLOntology> implements LoadedOntology<OWLOntology> {
+public class OWLAPIOntology extends BasicOntology<OWLOntology> implements HeavyLoadedOntology<OWLOntology> {
+
+ /* For caching sizes */
+ private int nbentities = -1;
+ private int nbclasses = -1;
+ private int nbproperties = -1;
+ private int nbobjectproperties = -1;
+ private int nbdataproperties = -1;
+ private int nbindividuals = -1;
public OWLAPIOntology() {
setFormalism( "OWL1.0" );
@@ -84,12 +87,16 @@ public class OWLAPIOntology extends BasicOntology<OWLOntology> implements Loaded
} catch (Exception e) {}; // does not happen
};
- // Ontology interface
+ // -----------------------------------------------------------------
+ // Ontology interface [//DONE]
+
public OWLOntology getOntology() { return onto; }
public void setOntology( OWLOntology o ) { this.onto = o; }
- // LoadedOntology interface
+ // -----------------------------------------------------------------
+ // LoadedOntology interface [//DONE]
+
public Object getEntity( URI uri ) throws AlignmentException {
try {
OWLEntity result = ((OWLOntology)onto).getClass( uri );
@@ -120,6 +127,42 @@ public class OWLAPIOntology extends BasicOntology<OWLOntology> implements Loaded
}
};
+ public Set<String> getEntityNames( Object o , String lang ) throws AlignmentException {
+ try {
+ OWLEntity e = ((OWLEntity) o);
+ return getAnnotations(e,lang,RDFSVocabularyAdapter.INSTANCE.getLabel());
+ } catch (OWLException oex) {
+ return null;
+ }
+ }
+ public Set<String> getEntityNames( Object o ) throws AlignmentException {
+ try {
+ OWLEntity e = ((OWLEntity) o);
+ return getAnnotations(e,null,RDFSVocabularyAdapter.INSTANCE.getLabel());
+ } catch (OWLException oex) {
+ return null;
+ }
+ };
+
+
+ public Set<String> getEntityComments( Object o , String lang ) throws AlignmentException {
+ try {
+ OWLEntity e = ((OWLEntity) o);
+ return getAnnotations(e,lang,RDFSVocabularyAdapter.INSTANCE.getComment());
+ } catch (OWLException oex) {
+ return null;
+ }
+ };
+
+ public Set<String> getEntityComments( Object o ) throws AlignmentException {
+ try {
+ OWLEntity e = ((OWLEntity) o);
+ return getAnnotations(e,null,RDFSVocabularyAdapter.INSTANCE.getComment());
+ } catch (OWLException oex) {
+ return null;
+ }
+ };
+
protected Set<String> getAnnotations(final OWLEntity e , final String lang , final String typeAnnot ) throws OWLException {
final OWLOntology o = this.onto;
return new AbstractSet<String>() {
@@ -158,42 +201,6 @@ public class OWLAPIOntology extends BasicOntology<OWLOntology> implements Loaded
return annots;*/
}
- public Set<String> getEntityNames( Object o , String lang ) throws AlignmentException {
- try {
- OWLEntity e = ((OWLEntity) o);
- return getAnnotations(e,lang,RDFSVocabularyAdapter.INSTANCE.getLabel());
- } catch (OWLException oex) {
- return null;
- }
- }
- public Set<String> getEntityNames( Object o ) throws AlignmentException {
- try {
- OWLEntity e = ((OWLEntity) o);
- return getAnnotations(e,null,RDFSVocabularyAdapter.INSTANCE.getLabel());
- } catch (OWLException oex) {
- return null;
- }
- };
-
-
- public Set<String> getEntityComments( Object o , String lang ) throws AlignmentException {
- try {
- OWLEntity e = ((OWLEntity) o);
- return getAnnotations(e,lang,RDFSVocabularyAdapter.INSTANCE.getComment());
- } catch (OWLException oex) {
- return null;
- }
- };
-
- public Set<String> getEntityComments( Object o ) throws AlignmentException {
- try {
- OWLEntity e = ((OWLEntity) o);
- return getAnnotations(e,null,RDFSVocabularyAdapter.INSTANCE.getComment());
- } catch (OWLException oex) {
- return null;
- }
- };
-
public Set<String> getEntityAnnotations( Object o ) throws AlignmentException {
try {
return getAnnotations(((OWLEntity) o),null,null);
@@ -203,31 +210,28 @@ public class OWLAPIOntology extends BasicOntology<OWLOntology> implements Loaded
};
public boolean isEntity( Object o ){
- if ( o instanceof OWLEntity ) return true;
- else return false;
+ return ( o instanceof OWLEntity );
};
public boolean isClass( Object o ){
- if ( o instanceof OWLClass ) return true;
- else return false;
+ return ( o instanceof OWLClass );
};
public boolean isProperty( Object o ){
- if ( o instanceof OWLProperty ) return true;
- else return false;
+ return ( o instanceof OWLProperty );
};
public boolean isDataProperty( Object o ){
- if ( o instanceof OWLDataProperty ) return true;
- else return false;
+ return ( o instanceof OWLDataProperty );
};
public boolean isObjectProperty( Object o ){
- if ( o instanceof OWLObjectProperty ) return true;
- else return false;
+ return ( o instanceof OWLObjectProperty );
};
public boolean isIndividual( Object o ){
- if ( o instanceof OWLIndividual ) return true;
- else return false;
+ return ( o instanceof OWLIndividual );
};
+ // ***JE:
+ // We should solve this issue, is it better to go this way or tu use the OWL API?
// JD: allows to retrieve some specific entities by giving their class
+ // This is not part of the interface...
protected Set<?> getEntities(Class<? extends OWLEntity> c) throws OWLException{
OWLEntityCollector ec = new OWLEntityCollector();
onto.accept(ec);
@@ -269,50 +273,25 @@ public class OWLAPIOntology extends BasicOntology<OWLOntology> implements Loaded
}
}
- public Set<Object> getAssertedProperties( Object cl ) {
- Set<Object> prop = new HashSet<Object>();
- try {
- for ( Object ent : ((OWLClass)cl).getSuperClasses( getOntology() ) ){
- // Not correct
- if ( ent instanceof OWLRestriction ) prop.add( ent );
- }
- } catch (OWLException ex) {
- };
- return prop;
- }
-
-
-
- public Set<Object> getAssertedObjectProperties( Object cl ){
- return null;
- }
-
- public Set<Object> getAssertedDataProperties( Object cl ){
- return null;
- }
-
- // The only point is if I should return OWLProperties or names...
- // I guess that I will return names (ns+name) because otherwise I will need a full
- // Abstract ontology interface and this is not the rule...
- public Set<?> getObjectProperties() {
+ public Set<?> getDataProperties() {
try {
- // [Warning:unchecked] due to OWL API not serving generic types
// This first method returns also Properties not defined in the Onto
// i.e. properties having an namespace different from the ontology uri
- return ((OWLOntology)onto).getObjectProperties(); // [W:unchecked]
- // This method works better
- //return getEntities(OWLObjectProperty.class);
+ return ((OWLOntology)onto).getDataProperties(); // [W:unchecked]
+ //return getEntities(OWLDataProperty.class);
} catch (OWLException ex) {
return null;
}
}
- public Set<?> getDataProperties() {
+ public Set<?> getObjectProperties() {
try {
+ // [Warning:unchecked] due to OWL API not serving generic types
// This first method returns also Properties not defined in the Onto
// i.e. properties having an namespace different from the ontology uri
- return ((OWLOntology)onto).getDataProperties(); // [W:unchecked]
- //return getEntities(OWLDataProperty.class);
+ return ((OWLOntology)onto).getObjectProperties(); // [W:unchecked]
+ // This method works better (??)
+ //return getEntities(OWLObjectProperty.class);
} catch (OWLException ex) {
return null;
}
@@ -327,168 +306,213 @@ public class OWLAPIOntology extends BasicOntology<OWLOntology> implements Loaded
}
}
- /*
- private Set<Object> getEntities( Class<? extends OWLEntity> c ){
- OWLEntityCollector ec = new OWLEntityCollector();
- try {
- getOntology().accept(ec);
- Set<Object> entities = new HashSet<Object>();
- for (Object obj : ec.entities()) {
- if (c.isInstance(obj) && (((OWLEntity) obj).getURI() != null) &&
- ((OWLEntity) obj).getURI().getSchemeSpecificPart().equals(ont.getURI().getSchemeSpecificPart())){
- //System.out.println(((OWLEntity) obj).getURI().getSchemeSpecificPart()+" - "+ont.getURI().getSchemeSpecificPart());
- //System.out.println(((OWLEntity) obj).getURI()+" : "+ont.getOntology().contains(obj));
- entities.add(new OWLAPIEntity((OWLEntity)obj, ont, ((OWLEntity)obj).getURI() ));
- }
- }
- return entities;
- } catch (OWLException e) {
- // TODO Auto-generated catch block
- e.printStackTrace();
- }
- return null;
- }
- */
- /*
- private void addAnnotations(OWLAPIEntity ent) {
- for (String[] a : getAnnotations(ent.getObject(),(OWLOntology)ent.getOntology().getOntology())) {
- ent.getAnnotations().add(a[0]);
- if (a[1]!=null) {
- ent.getLangToAnnot(EntityAdapter.LANGUAGES.valueOf(a[1])).add(a[0]);
- }
- if (a[2].equals(RDFSVocabularyAdapter.INSTANCE.getComment())) {
- ent.getTypeToAnnot(EntityAdapter.TYPE.comment).add(a[0]);
- }
- else if (a[2].equals(RDFSVocabularyAdapter.INSTANCE.getLabel())) {
- ent.getTypeToAnnot(EntityAdapter.TYPE.comment).add(a[0]);
- }
- }
- }
- */
- /*
- private Set<String[]> getAnnotations(OWLEntity e, OWLOntology o) {
- Set<String[]> res = new HashSet<String[]>();
- Set annots;
- try {
- annots = e.getAnnotations(o);
- for (Object annot : annots) {
- OWLAnnotationInstance annInst = ((OWLAnnotationInstance) annot);
- String val;
- String lang=null;
- String annotUri = annInst.getProperty().getURI().toString();
- if ( annInst.getContent() instanceof OWLDataValue ) {
- OWLDataValue odv = (OWLDataValue) annInst.getContent();
- val = odv.toString();
- lang = odv.getLang();
- }
- else
- val= (String) annInst.getContent();
- res.add(new String[]{val,lang,annotUri});
- }
- }
- catch (OWLException oe) {
- oe.printStackTrace();
- }
- return Collections.unmodifiableSet(res);
- }
- */
-
- // JE: particularly inefficient
public int nbClasses() {
+ if ( nbclasses != -1 ) return nbclasses;
try {
- return ((OWLOntology)onto).getClasses().size();
+ nbclasses = ((OWLOntology)onto).getClasses().size();
+ return nbclasses;
} catch (OWLException oex) {
return 0;
}
}
public int nbProperties() {
- return nbObjectProperties()+nbDataProperties();
+ if ( nbproperties != -1 ) return nbproperties;
+ nbproperties = nbObjectProperties()+nbDataProperties();
+ return nbproperties;
}
public int nbObjectProperties() {
+ if ( nbobjectproperties != -1 ) return nbobjectproperties;
try {
- return ((OWLOntology)onto).getObjectProperties().size();
+ nbobjectproperties = ((OWLOntology)onto).getObjectProperties().size();
+ return nbobjectproperties;
} catch (OWLException oex) {
return 0;
}
}
public int nbDataProperties() {
+ if ( nbdataproperties != -1 ) return nbdataproperties;
try {
- return ((OWLOntology)onto).getDataProperties().size();
+ nbdataproperties = ((OWLOntology)onto).getDataProperties().size();
+ return nbdataproperties;
} catch (OWLException oex) {
return 0;
}
}
public int nbInstances() {
+ if ( nbindividuals != -1 ) return nbindividuals;
try {
- return ((OWLOntology)onto).getIndividuals().size();
+ nbindividuals = ((OWLOntology)onto).getIndividuals().size();
+ return nbindividuals;
} catch (OWLException oex) {
return 0;
}
}
- /* HeavyLoadedOntology specifics */
-
- public Set<?> getProperties( OWLDescription desc ) {
- Set<Object> list = new HashSet<Object>();
+ public void unload() {
try {
- if ( desc instanceof OWLRestriction ){
- list.add( ((OWLRestriction)desc).getProperty() );
- } else if ( desc instanceof OWLClass ) {
- // JE: I suspect that this can be a cause for looping!!
- for ( Object cl : ((OWLClass)desc).getEquivalentClasses((OWLOntology)onto) ){
- // JE: strange casting
- Set<?> res = getProperties( (OWLDescription)cl );
- if ( res != null ) list.add( res );
- }
- } else if ( desc instanceof OWLNaryBooleanDescription ) {
- for ( Object d : ((OWLNaryBooleanDescription)desc).getOperands() ){
- // JE: strange casting
- Set<?> res = getProperties( (OWLDescription)d );
- if ( res != null ) list.add( res );
+ ((OWLOntology)onto).getOWLConnection().notifyOntologyDeleted( ((OWLOntology)onto) );
+ } catch (OWLException ex) { System.err.println(ex); };
+ }
+
+ // -----------------------------------------------------------------
+ // HeavyLoadedOntology interface [//TOCHECK]
+
+ // [//TODO]
+ public boolean getCapabilities( int Direct, int Asserted, int Named ){
+ return true;
+ }
+
+ // Pretty inefficient but nothing seems to be stored
+ public Set<Object> getSubClasses( Object cl, int local, int asserted, int named ){
+ Set<Object> sbcl = new HashSet<Object>();
+ for( Object c : getClasses() ) {
+ if ( getSuperClasses( (OWLClass)c, local, asserted, named ).contains( cl ) ) sbcl.add( c );
+ }
+ return sbcl;
+ }
+ public Set<Object> getSuperClasses( Object cl, int local, int asserted, int named ){
+ Set<Object> spcl = new HashSet<Object>();
+ if ( asserted == OntologyFactory.ASSERTED ){
+ try {
+ for( Object rest : ((OWLClass)cl).getSuperClasses( getOntology() ) ){
+ if (rest instanceof OWLClass) spcl.add( rest );
}
+ } catch (OWLException ex) {
}
- } catch (OWLException e) { e.printStackTrace(); }
- return list;
+ } else {
+ try {
+ // JE: I do not feel that this is really correct
+ Set<Object> sup = new HashSet<Object>();
+ for( Object rest : ((OWLClass)cl).getSuperClasses( getOntology() ) ){
+ if (rest instanceof OWLClass) {
+ spcl.add( rest );
+ sup.add( rest );
+ }
+ }
+ } catch (OWLException ex) {
+ };
+ }
+ return spcl;
}
- // NamedAssertedSuperClasses
- public Set<Object> getAssertedSuperClasses( Object cl ){
- Set<Object> spcl = new HashSet<Object>();
+ /*
+ * In the OWL API, there is no properties: there are SuperClasses which are restrictions
+ */
+ public Set<Object> getProperties( Object cl, int local, int asserted, int named ){
+ Set<Object> prop = new HashSet<Object>();
+ if ( asserted == OntologyFactory.ASSERTED && local == OntologyFactory.LOCAL ) {
+ try {
+ for ( Object ent : ((OWLClass)cl).getSuperClasses( getOntology() ) ){
+ if ( ent instanceof OWLRestriction )
+ prop.add( ((OWLRestriction)cl).getProperty() );
+ }
+ } catch (OWLException e) { e.printStackTrace(); }
+ } else {
+ prop = getInheritedProperties( (OWLClass)cl );
+ }
+ return prop;
+ }
+ // Not very efficient: 2n instead of n
+ public Set<Object> getDataProperties( Object c, int local, int asserted, int named ){
+ Set<Object> props = new HashSet<Object>();
+ for ( Object p : getProperties( c, local, asserted, named ) ){
+ if ( p instanceof OWLDataProperty ) props.add( p );
+ }
+ return props;
+ }
+ // Not very efficient: 2n instead of n
+ public Set<Object> getObjectProperties( Object c, int local, int asserted, int named ){
+ Set<Object> props = new HashSet<Object>();
+ for ( Object p : getProperties( c, local, asserted, named ) ){
+ if ( p instanceof OWLObjectProperty ) props.add( p );
+ }
+ return props;
+ }
+ // Pretty inefficient but nothing seems to be stored
+ public Set<Object> getInstances( Object cl, int local, int asserted, int named ){
+ Set<Object> sbcl = new HashSet<Object>();
try {
- for( Object rest : ((OWLClass)cl).getSuperClasses( getOntology() ) ){
- if (rest instanceof OWLClass) spcl.add( rest );
+ for( Object i : getIndividuals() ) {
+ //if ( getClasses( (OWLIndividual)i, local, asserted, named ).contains( cl ) ) sbcl.add( i );
+ if ( ((OWLIndividual)i).getTypes( getOntology() ).contains( cl ) ) sbcl.add( i );
}
- } catch (OWLException ex) {
- };
- return spcl;
+ } catch (OWLException ex) {};
+ return sbcl;
}
- // NamedSuperClasses
- public Set<Object> getSuperClasses( Object cl ){
- Set<Object> spcl = new HashSet<Object>();
+ // Pretty inefficient but nothing seems to be stored
+ public Set<Object> getSubProperties( Object pr, int local, int asserted, int named ){
+ Set<Object> sbpr = new HashSet<Object>();
+ for( Object p : getProperties() ) {
+ if ( getSuperProperties( (OWLProperty)p, local, asserted, named ).contains( pr ) ) sbpr.add( p );
+ }
+ return sbpr;
+ }
+ public Set<Object> getSuperProperties( Object pr, int local, int asserted, int named ){
+ Set<Object> supers = new HashSet<Object>();
+ if ( asserted == OntologyFactory.ASSERTED ){
+ try {
+ for( Object rest : ((OWLProperty)pr).getSuperProperties( getOntology() ) ){
+ if (rest instanceof OWLProperty) supers.add( rest );
+ }
+ } catch (OWLException ex) {
+ }
+ } else {
+ try {
+ Set<Object> sup = new HashSet<Object>();
+ for( Object rest : ((OWLProperty)pr).getSuperProperties( getOntology() ) ){
+ if (rest instanceof OWLProperty) {
+ sup.add( rest );
+ supers.add( rest );
+ }
+ }
+ } catch (OWLException ex) {
+ };
+ }
+ return supers;
+ }
+ public Set<Object> getRange( Object p, boolean asserted ){
+ Set resultSet = new HashSet();
try {
- // traversing
- Set<Object> sup = new HashSet<Object>();
- for( Object rest : ((OWLClass)cl).getSuperClasses( getOntology() ) ){
- if (rest instanceof OWLClass) {
- spcl.add( rest );
- sup.add( rest );
+ for ( Object ent : ((OWLProperty)p).getRanges( getOntology() ) ){
+ // Not correct
+ // Could be something else than class
+ if ( ent instanceof OWLClass || ent instanceof OWLDataType ) {
+ resultSet.add( ent );
}
}
- } catch (OWLException ex) {
- };
- return spcl;
+ } catch (OWLException ex) {};
+ return resultSet;
+ }
+ public Set<Object> getDomain( Object p, boolean asserted ){
+ Set resultSet = new HashSet();
+ try {
+ for ( Object ent : ((OWLProperty)p).getDomains( getOntology() ) ){
+ // Not correct
+ // Could be something else than class
+ if ( ent instanceof OWLClass ) {
+ resultSet.add( ent );
+ }
+ }
+ } catch (OWLException ex) {};
+ return resultSet;
+ }
+ public Set<Object> getClasses( Object i, int local, int asserted, int named ){
+ Set<Object> supers = null;
+ try {
+ supers = ((OWLIndividual)i).getTypes( getOntology() );
+ } catch (OWLException ex) {};
+ if ( local == OntologyFactory.LOCAL ) {
+ return supers;
+ } else {
+ // inherits the superclasses (unless we have to reduce them...)
+ return supers;
+ }
}
- /* public Set<Object> getSubClasses( Object cl ){
- // This will return n array and not a set...
- return ((OWLClass)cl).getSuperClasses( getOntology() );
- }*/
- //OWLRestriction.getProperty()
- //OWLNaryBooleanDescription.getOperand()
// JE: note this may be wrong if p is a property
public Set<Object> getCardinalityRestrictions( Object p ){//JFDK
Set<Object> spcl = new HashSet<Object>();
@@ -503,6 +527,17 @@ public class OWLAPIOntology extends BasicOntology<OWLOntology> implements Loaded
return spcl;
}
+ /*
+ * Inherits all properties of a class
+ */
+ private Set<Object> getInheritedProperties( OWLClass cl ) {
+ Set resultSet = new HashSet();
+ try { getProperties( cl, resultSet ); }
+ catch (OWLException ex) {};
+ return resultSet;
+ }
+
+ /* This traverse properties */
public void getProperties( OWLDescription desc, Set<Object> list) throws OWLException {
if ( desc instanceof OWLRestriction ){
//getProperties( (OWLRestriction)desc, list );
@@ -534,18 +569,4 @@ public class OWLAPIOntology extends BasicOntology<OWLOntology> implements Loaded
}
}
- private Set<Object> getProperties( OWLClass cl ) {
- Set resultSet = new HashSet();
- try { getProperties( cl, resultSet ); }
- catch (OWLException ex) {};
- return resultSet;
- }
-
-
- public void unload() {
- try {
- ((OWLOntology)onto).getOWLConnection().notifyOntologyDeleted( ((OWLOntology)onto) );
- } catch (OWLException ex) { System.err.println(ex); };
- }
-
}