From 293814d04199aa5bf0aa23bcfd09bafa2ef1c90d Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?J=C3=A9r=C3=B4me=20Euzenat?= <Jerome.Euzenat@inria.fr>
Date: Wed, 17 Feb 2010 19:35:14 +0000
Subject: [PATCH] - suppressed OWL API 2 interface
---
.../ontowrap/owlapi2/OWLAPI2Ontology.java | 415 ------------------
.../owlapi2/OWLAPI2OntologyFactory.java | 105 -----
2 files changed, 520 deletions(-)
delete mode 100644 src/fr/inrialpes/exmo/ontowrap/owlapi2/OWLAPI2Ontology.java
delete mode 100644 src/fr/inrialpes/exmo/ontowrap/owlapi2/OWLAPI2OntologyFactory.java
diff --git a/src/fr/inrialpes/exmo/ontowrap/owlapi2/OWLAPI2Ontology.java b/src/fr/inrialpes/exmo/ontowrap/owlapi2/OWLAPI2Ontology.java
deleted file mode 100644
index af6bc8b1..00000000
--- a/src/fr/inrialpes/exmo/ontowrap/owlapi2/OWLAPI2Ontology.java
+++ /dev/null
@@ -1,415 +0,0 @@
-/*
- * $Id$
- *
- * Copyright (C) INRIA, 2008-2010
- *
- * This program is free software; you can redistribute it and/or modify
- * it under the terms of the GNU Lesser General Public License as published by
- * the Free Software Foundation; either version 2.1 of the License, or
- * (at your option) any later version.
- *
- * This program is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU Lesser General Public License for more details.
- *
- * You should have received a copy of the GNU Lesser General Public License
- * along with this program; if not, write to the Free Software
- * Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
- */
-
-package fr.inrialpes.exmo.ontowrap.owlapi2;
-
-import java.net.URI;
-import java.util.HashSet;
-import java.util.Set;
-import java.util.Iterator;
-
-import org.semanticweb.owl.align.AlignmentException;
-import org.semanticweb.owl.model.OWLAnnotation;
-import org.semanticweb.owl.model.OWLDataType;
-import org.semanticweb.owl.model.OWLClass;
-import org.semanticweb.owl.model.OWLConstant;
-import org.semanticweb.owl.model.OWLDataProperty;
-import org.semanticweb.owl.model.OWLEntity;
-import org.semanticweb.owl.model.OWLIndividual;
-import org.semanticweb.owl.model.OWLObjectProperty;
-import org.semanticweb.owl.model.OWLOntology;
-import org.semanticweb.owl.model.OWLProperty;
-import org.semanticweb.owl.model.OWLRestriction;
-import org.semanticweb.owl.model.OWLDescription;
-import org.semanticweb.owl.model.OWLNaryBooleanDescription;
-import org.semanticweb.owl.model.OWLCardinalityRestriction;
-import org.semanticweb.owl.model.OWLDataAllRestriction;
-import org.semanticweb.owl.model.OWLObjectAllRestriction;
-import org.semanticweb.owl.model.OWLException;
-import org.semanticweb.owl.vocab.OWLRDFVocabulary;
-
-import fr.inrialpes.exmo.ontowrap.BasicOntology;
-import fr.inrialpes.exmo.ontowrap.OntologyFactory;
-import fr.inrialpes.exmo.ontowrap.HeavyLoadedOntology;
-
-public class OWLAPI2Ontology extends BasicOntology<OWLOntology> implements
- HeavyLoadedOntology<OWLOntology> {
-
- public OWLAPI2Ontology() {
- }
-
- public Set<? extends Object> getClasses() {
- return onto.getReferencedClasses();
- }
-
- public Set<? extends Object> getDataProperties() {
- return onto.getReferencedDataProperties();
- }
-
- public Set<? extends Object> getEntities() {
- return onto.getReferencedEntities();
- }
-
- public Object getEntity(URI u) throws AlignmentException {
- for (OWLEntity e : onto.getReferencedEntities()) {
- if (e.getURI().equals(u))
- return e;
- }
- return null;
- }
-
- protected Set<String> getEntityAnnotations(Object o, URI type, String lang) {
- OWLEntity ent = (OWLEntity) o;
- Set<String> annots = new HashSet<String>();
- Set<OWLAnnotation> owlAnnots;
- if (type==null)
- owlAnnots = ent.getAnnotations(onto);
- else
- owlAnnots = ent.getAnnotations(onto, type);
- for (OWLAnnotation annot : owlAnnots) {
- OWLConstant c = annot.getAnnotationValueAsConstant();
- if (lang == null || c.asOWLUntypedConstant().hasLang(lang))
- annots.add(c.getLiteral());
- }
- return annots;
- }
-
- public Set<String> getEntityAnnotations(Object o) throws AlignmentException {
- return getEntityAnnotations(o, null, null);
- }
-
- public Set<String> getEntityComments(Object o, String lang)
- throws AlignmentException {
- return getEntityAnnotations(o, OWLRDFVocabulary.RDFS_COMMENT.getURI(),
- lang);
- }
-
- public Set<String> getEntityComments(Object o) throws AlignmentException {
- return getEntityAnnotations(o, OWLRDFVocabulary.RDFS_COMMENT.getURI(),
- null);
- }
-
- public String getEntityName(Object o) throws AlignmentException {
- try {
- // Should try to get the label first
- return getFragmentAsLabel( ((OWLEntity) o).getURI() );
- } catch (ClassCastException e) {
- throw new AlignmentException(o+" is not an entity for "+ onto.getURI());
- }
- }
-
- public String getEntityName( Object o, String lang ) throws AlignmentException {
- // Should first get the label in the language
- return getEntityName( o );
- }
-
- public Set<String> getEntityNames(Object o, String lang) throws AlignmentException {
- return getEntityAnnotations(o, OWLRDFVocabulary.RDFS_LABEL.getURI(), lang);
- }
-
- public Set<String> getEntityNames(Object o) throws AlignmentException {
- Set<String> result = getEntityAnnotations(o, OWLRDFVocabulary.RDFS_LABEL.getURI(), null);
- if ( result == null ) {
- String label = getEntityName( o );
- if ( label != null ) {
- result = new HashSet();
- result.add( label );
- }
- }
- return result;
- }
-
- public URI getEntityURI(Object o) throws AlignmentException {
- try {
- return ((OWLEntity) o).getURI();
- } catch (ClassCastException e) {
- throw new AlignmentException(o + " is not an entity for "
- + onto.getURI());
- }
- }
-
- public Set<? extends Object> getIndividuals() {
- return onto.getReferencedIndividuals();
- }
-
- public Set<? extends Object> getObjectProperties() {
- //System.err.println ( "ONTO: "+onto );
- return onto.getReferencedObjectProperties();
- }
-
- public Set<? extends Object> getProperties() {
- Set<OWLDataProperty> dtProp = onto.getReferencedDataProperties();
- Set<OWLObjectProperty> oProp = onto.getReferencedObjectProperties();
- Set<Object> prop = new HashSet<Object>(dtProp.size() + oProp.size());
- prop.addAll(dtProp);
- prop.addAll(oProp);
- return prop;
- }
-
- public boolean isClass(Object o) {
- return o instanceof OWLClass;
- }
-
- public boolean isDataProperty(Object o) {
- return o instanceof OWLDataProperty;
- }
-
- public boolean isEntity(Object o) {
- return o instanceof OWLEntity;
- }
-
- public boolean isIndividual(Object o) {
- return o instanceof OWLIndividual;
- }
-
- public boolean isObjectProperty(Object o) {
- return o instanceof OWLObjectProperty;
- }
-
- public boolean isProperty(Object o) {
- return o instanceof OWLProperty;
- }
-
- public int nbClasses() {
- return onto.getReferencedClasses().size();
- }
-
- public int nbDataProperties() {
- return onto.getReferencedDataProperties().size();
- }
-
- public int nbIndividuals() {
- return onto.getReferencedIndividuals().size();
- }
-
- public int nbObjectProperties() {
- return onto.getReferencedObjectProperties().size();
- }
-
- public int nbProperties() {
- return onto.getReferencedDataProperties().size()
- + onto.getReferencedObjectProperties().size();
- }
-
- int nbentities = -1;
-
- public int nbEntities() {
- if ( nbentities != -1 ) return nbentities;
- nbentities = nbClasses()+nbProperties()+nbIndividuals();
- return nbentities;
- }
-
- // This is the HeavyLoadedOntology interface
- // JE NOT FULLY IMPLEMENTED YET...
-
- /* Capability methods */
- // [//TODO]
- public boolean getCapabilities( int Direct, int Asserted, int Named ){
- return true;
- };
-
- /* Class methods */
- // Pretty inefficient but nothing seems to be stored
- public Set<Object> getSubClasses( Object cl, int local, int asserted, int named ){
- Set<Object> sbcl = new HashSet<Object>();
- for( Object c : getClasses() ) {
- if ( getSuperClasses( (OWLClass)c, local, asserted, named ).contains( cl ) ) sbcl.add( c );
- }
- return sbcl;
- };
- public Set<Object> getSuperClasses( Object cl, int local, int asserted, int named ){
- Set<Object> spcl = new HashSet<Object>();
- if ( asserted == OntologyFactory.ASSERTED ){
- for( Object rest : ((OWLClass)cl).getSuperClasses( getOntology() ) ){
- if (rest instanceof OWLClass) spcl.add( rest );
- }
- } else {
- // JE: I do not feel that this is really correct
- Set<Object> sup = new HashSet<Object>();
- for( Object rest : ((OWLClass)cl).getSuperClasses( getOntology() ) ){
- if (rest instanceof OWLClass) {
- spcl.add( rest );
- sup.add( rest );
- }
- }
- }
- return spcl;
- };
- /*
- * In the OWL API, there is no properties: there are SuperClasses which are restrictions
- */
- public Set<Object> getProperties( Object cl, int local, int asserted, int named ){
- Set<Object> prop = new HashSet<Object>();
- if ( asserted == OntologyFactory.ASSERTED && local == OntologyFactory.LOCAL ) {
- for ( Object ent : ((OWLClass)cl).getSuperClasses( getOntology() ) ){
- if ( ent instanceof OWLRestriction )
- prop.add( ((OWLRestriction)ent).getProperty() );
- }
- } else {
- prop = getInheritedProperties( (OWLClass)cl );
- }
- return prop;
- };
- // Not very efficient: 2n instead of n
- public Set<Object> getDataProperties( Object c, int local, int asserted, int named ){
- Set<Object> props = new HashSet<Object>();
- for ( Object p : getProperties( c, local, asserted, named ) ){
- if ( p instanceof OWLDataProperty ) props.add( p );
- }
- return props;
- };
- // Not very efficient: 2n instead of n
- public Set<Object> getObjectProperties( Object c, int local, int asserted, int named ){
- Set<Object> props = new HashSet<Object>();
- for ( Object p : getProperties( c, local, asserted, named ) ){
- if ( p instanceof OWLObjectProperty ) props.add( p );
- }
- return props;
- };
- // Pretty inefficient but nothing seems to be stored
- public Set<Object> getInstances( Object cl, int local, int asserted, int named ){
- Set<Object> sbcl = new HashSet<Object>();
- for( Object i : getIndividuals() ) {
- //if ( getClasses( (OWLIndividual)i, local, asserted, named ).contains( cl ) ) sbcl.add( i );
- if ( ((OWLIndividual)i).getTypes( getOntology() ).contains( cl ) ) sbcl.add( i );
- }
- return sbcl;
- };
-
- /* Property methods */
- // Pretty inefficient but nothing seems to be stored
- public Set<Object> getSubProperties( Object pr, int local, int asserted, int named ){
- Set<Object> sbpr = new HashSet<Object>();
- for( Object p : getProperties() ) {
- if ( getSuperProperties( (OWLProperty)p, local, asserted, named ).contains( pr ) ) sbpr.add( p );
- }
- return sbpr;
- };
- public Set<Object> getSuperProperties( Object pr, int local, int asserted, int named ){
- Set<Object> supers = new HashSet<Object>();
- if ( asserted == OntologyFactory.ASSERTED ){
- for( Object rest : ((OWLProperty)pr).getSuperProperties( getOntology() ) ){
- if (rest instanceof OWLProperty) supers.add( rest );
- }
- } else {
- Set<Object> sup = new HashSet<Object>();
- for( Object rest : ((OWLProperty)pr).getSuperProperties( getOntology() ) ){
- if (rest instanceof OWLProperty) {
- sup.add( rest );
- supers.add( rest );
- }
- }
- }
- return supers;
- };
- public Set<Object> getRange( Object p, int asserted ){
- Set resultSet = new HashSet();
- for ( Object ent : ((OWLProperty)p).getRanges( getOntology() ) ){
- // Not correct
- // Could be something else than class
- if ( ent instanceof OWLClass || ent instanceof OWLDataType ) {
- resultSet.add( ent );
- }
- }
- return resultSet;
- };
- public Set<Object> getDomain( Object p, int asserted ){
- Set resultSet = new HashSet();
- for ( Object ent : ((OWLProperty)p).getDomains( getOntology() ) ){
- // Not correct
- // Could be something else than class
- if ( ent instanceof OWLClass ) {
- resultSet.add( ent );
- }
- }
- return resultSet;
- };
-
- /* Individual methods */
- public Set<Object> getClasses( Object i, int local, int asserted, int named ){
- Set<Object> supers = null;
- if ( i instanceof OWLIndividual )
- for ( OWLDescription d : ((OWLIndividual)i).getTypes( getOntology() ) ){
- if ( d instanceof OWLClass ) supers.add( (OWLClass)d );
- }
- if ( local == OntologyFactory.LOCAL ) {
- return (Set<Object>)supers;
- } else {
- // inherits the superclasses (unless we have to reduce them...)
- Set<Object> newsupers = new HashSet<Object>();
- for ( Object cl : supers ){
- newsupers.addAll( getSuperClasses( cl, local, asserted, named ) );
- }
- newsupers.addAll( supers ); // maybe useful
- return newsupers;
- }
- };
-
- /*
- * Inherits all properties of a class
- */
- private Set<Object> getInheritedProperties( OWLClass cl ) {
- Set resultSet = new HashSet();
- try { getProperties( cl, resultSet, new HashSet()); }
- catch (OWLException ex) {};
- return resultSet;
- }
-
- /* This traverse properties */
- public void getProperties( OWLDescription desc, Set<Object> list, Set<Object> visited ) throws OWLException {
- if ( desc instanceof OWLRestriction ){
- //getProperties( (OWLRestriction)desc, list );
- list.add( ((OWLRestriction)desc).getProperty() );
- } else if ( desc instanceof OWLClass ) {
- getProperties( (OWLClass)desc, list, visited );
- } else if ( desc instanceof OWLNaryBooleanDescription ) {
- for ( Object d : ((OWLNaryBooleanDescription)desc).getOperands() ){
- getProperties( (OWLDescription)d, list, visited );
- }
- //getProperties( (OWLNaryBooleanDescription)desc, list, visited );
- }
- }
- public void getProperties( OWLRestriction rest, Set<Object> list, Set<Object> visited ) throws OWLException {
- list.add( (Object)rest.getProperty() );
- }
- public void getProperties( OWLNaryBooleanDescription d, Set<Object> list, Set<Object> visited ) throws OWLException {
- for ( OWLDescription desc : d.getOperands() ){
- getProperties( desc, list, visited );
- }
- }
- public void getProperties( OWLClass cl, Set<Object> list, Set<Object> visited ) throws OWLException {
- for ( Object desc : cl.getSuperClasses( getOntology() ) ){
- getProperties( (OWLDescription)desc, list, visited );
- }
- for ( Object desc : cl.getEquivalentClasses( getOntology() ) ){
- if ( !visited.contains( desc ) ) {
- visited.add( desc );
- getProperties( (OWLDescription)desc, list, visited );
- }
- }
- }
-
- // JD: it is hazardous...
- public void unload() {
- onto = null;
- }
-
-
-}
diff --git a/src/fr/inrialpes/exmo/ontowrap/owlapi2/OWLAPI2OntologyFactory.java b/src/fr/inrialpes/exmo/ontowrap/owlapi2/OWLAPI2OntologyFactory.java
deleted file mode 100644
index 76312417..00000000
--- a/src/fr/inrialpes/exmo/ontowrap/owlapi2/OWLAPI2OntologyFactory.java
+++ /dev/null
@@ -1,105 +0,0 @@
-/*
- * $Id$
- *
- * Copyright (C) INRIA, 2008-2010
- *
- * This program is free software; you can redistribute it and/or modify
- * it under the terms of the GNU Lesser General Public License as published by
- * the Free Software Foundation; either version 2.1 of the License, or
- * (at your option) any later version.
- *
- * This program is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU Lesser General Public License for more details.
- *
- * You should have received a copy of the GNU Lesser General Public License
- * along with this program; if not, write to the Free Software
- * Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
- */
-
-package fr.inrialpes.exmo.ontowrap.owlapi2;
-
-import java.net.URI;
-import java.net.URISyntaxException;
-
-import org.semanticweb.owl.align.AlignmentException;
-import org.semanticweb.owl.apibinding.OWLManager;
-import org.semanticweb.owl.model.OWLOntology;
-import org.semanticweb.owl.model.OWLOntologyCreationException;
-import org.semanticweb.owl.model.OWLOntologyManager;
-
-import fr.inrialpes.exmo.ontowrap.OntologyCache;
-import fr.inrialpes.exmo.ontowrap.OntologyFactory;
-import fr.inrialpes.exmo.ontowrap.HeavyLoadedOntology;
-
-public class OWLAPI2OntologyFactory extends OntologyFactory {
-
- private URI formalismUri = null;
-
- private String formalismId = "OWL1.1";
-
- private OWLOntologyManager manager;
-
- private static OntologyCache<OWLAPI2Ontology> cache = null;
-
- public OWLAPI2OntologyFactory() {
- cache = new OntologyCache<OWLAPI2Ontology>();
- try {
- formalismUri = new URI("http://www.w3.org/2006/12/owl11-xml#");
- manager = OWLManager.createOWLOntologyManager();
- } catch (URISyntaxException ex) { // should not happen
- ex.printStackTrace();
- }
- }
-
- @Override
- public OWLAPI2Ontology newOntology( Object ontology ) throws AlignmentException {
- if ( ontology instanceof OWLOntology ) {
- OWLAPI2Ontology onto = new OWLAPI2Ontology();
- onto.setFormalism( formalismId );
- onto.setFormURI( formalismUri );
- onto.setOntology( (OWLOntology)ontology );
- onto.setURI( ((OWLOntology)ontology).getURI() );
- // JE: was commented but doubtful
- cache.recordOntology( onto.getURI(), onto );
- return onto;
- } else {
- throw new AlignmentException( "Argument is not an OWLOntology: "+ontology );
- }
- }
-
- @Override
- public HeavyLoadedOntology loadOntology( URI uri ) throws AlignmentException {
- OWLAPI2Ontology onto = null;
- onto = cache.getOntologyFromURI( uri );
- if ( onto != null ) return onto;
- onto = cache.getOntology( uri );
- if ( onto != null ) return onto;
- OWLOntology ontology;
- try {
- ontology = manager.loadOntologyFromPhysicalURI(uri);
- } catch (OWLOntologyCreationException e) {
- e.printStackTrace();
- throw new AlignmentException("Cannot load " + uri, e);
- }
- onto = new OWLAPI2Ontology();
- onto.setFormalism( formalismId );
- onto.setFormURI( formalismUri );
- onto.setOntology( ontology );
- onto.setFile( uri );
- onto.setURI( ontology.getURI() );
- cache.recordOntology( uri, onto );
- return onto;
- }
-
- public OWLOntologyManager getManager() {
- return manager;
- }
-
- @Override
- public void clearCache() {
- cache.clear();
- }
-
-}
--
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