From 18452f30b2808d2cec1f8801e324269e1fb4dc0c Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?J=C3=A9r=C3=B4me=20Euzenat?= <Jerome.Euzenat@inria.fr>
Date: Wed, 11 Jul 2007 13:00:42 +0000
Subject: [PATCH] - Added the inverse operation
---
.../align/service/AServProtocolManager.java | 2 +-
.../exmo/align/service/HTMLAServProfile.java | 21 +++++++++++++++++++
2 files changed, 22 insertions(+), 1 deletion(-)
diff --git a/src/fr/inrialpes/exmo/align/service/AServProtocolManager.java b/src/fr/inrialpes/exmo/align/service/AServProtocolManager.java
index 85baa349..6cf6b52e 100644
--- a/src/fr/inrialpes/exmo/align/service/AServProtocolManager.java
+++ b/src/fr/inrialpes/exmo/align/service/AServProtocolManager.java
@@ -493,11 +493,11 @@ public class AServProtocolManager {
} catch (Exception e) {
return new UnknownAlignment(newId(),mess,myId,mess.getSender(),"unknown/Alignment/"+id,(Parameters)null);
}
+ // I think that this is useless because invert always copy the alignment
if ( params.getParameter("id") == null ){
// Copy the alignment
}
// Invert it
- //try { al = al.clone().inverse(); }
try { al.inverse(); }
catch (AlignmentException e) {
return new ErrorMsg(newId(),mess,myId,mess.getSender(),"dummy//",(Parameters)null);
diff --git a/src/fr/inrialpes/exmo/align/service/HTMLAServProfile.java b/src/fr/inrialpes/exmo/align/service/HTMLAServProfile.java
index c29c68db..638f4e3e 100644
--- a/src/fr/inrialpes/exmo/align/service/HTMLAServProfile.java
+++ b/src/fr/inrialpes/exmo/align/service/HTMLAServProfile.java
@@ -470,6 +470,26 @@ public class HTMLAServProfile implements AlignmentServiceProfile {
msg += displayAnswer( answer );
}
}
+ } else if ( perf.equals("prminv") ) {
+ msg ="<h1>Inverse alignment</h1><form action=\"inv\">";
+ msg += "Alignment id: <select name=\"id\">";
+ for( Enumeration e = manager.alignments(); e.hasMoreElements(); ){
+ String id = ((Alignment)e.nextElement()).getExtension("id");
+ msg += "<option value=\""+id+"\">"+id+"</option>";
+ }
+ msg += "</select><br />";
+ msg += "<input type=\"submit\" name=\"action\" value=\"Invert\"/><br /></form>";
+ } else if ( perf.equals("inv") ) {
+ String id = (String)params.getParameter("id");
+ if ( id != null && !id.equals("") ){ // Trim it
+ Message answer = manager.inverse( new Message(newId(),(Message)null,myId,serverId,id, params) );
+ if ( answer instanceof ErrorMsg ) {
+ msg = testErrorMessages( answer );
+ } else {
+ msg = "<h1>Alignment inverted</h1>";
+ msg += displayAnswer( answer );
+ }
+ }
} else if ( perf.equals("prmalign") ) {
msg ="<h1>Match ontologies</h1><form action=\"align\">Ontology 1: <input type=\"text\" name=\"onto1\" size=\"80\"/> (uri)<br />Ontology 2: <input type=\"text\" name=\"onto2\" size=\"80\"/> (uri)<br /><small>These are the URL of places where to find these ontologies. They must be reachable by the server (i.e., file:// URI are acceptable if they are on the server)</small><br /><!--input type=\"submit\" name=\"action\" value=\"Find\"/><br /-->Methods: <select name=\"method\">";
for( Iterator it = manager.listmethods().iterator(); it.hasNext(); ) {
@@ -608,6 +628,7 @@ public class HTMLAServProfile implements AlignmentServiceProfile {
msg += "<li><form action=\"prmfind\"><input type=\"submit\" value=\"Find an alignment for ontologies\"/></form></li>";
msg += "<li><form action=\"prmalign\"><input type=\"submit\" value=\"Match ontologies\"/></form></li>";
msg += "<li><form action=\"prmcut\"><input type=\"submit\" value=\"Trim an alignment above some threshold\"/></form></li>";
+ msg += "<li><form action=\"prminv\"><input type=\"submit\" value=\"Invert an alignment\"/></form></li>";
msg += "<li><form action=\"prmload\"><input type=\"submit\" value=\"Load alignments\"/></form></li>";
msg += "<li><form action=\"prmstore\"><input type=\"submit\" value=\"Store an alignment in the server\"/></form></li>";
msg += "<li><form action=\"prmretrieve\"><input type=\"submit\" value=\"Retrieve an alignment from id\"/></form></li>";
--
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