- reengineered the tutorial part

html/tutorial/script.bat

-rem #####################
-rem # Preparation
-
-rem #mkdir alignapi
-rem #cd alignapi
-rem #unzip align*.zip
-rem #java -jar lib/procalign.jar --help
-rem #cd html/tutorial
-rem # Angel modifications
-rem #set CWD=/c:/alignapi/html/tutorial
-set CWD=%cd%
-set CWD=/%CWD:\=/%
-set WNDIR=
-
-rem #JE: for finding xsltproc
-set path=c:\3rdparty\bin;%path%
-rem #EndAngel
-
-del results\*.*
-
-rem #####################
-rem # Matching
-
-java -jar ../../lib/procalign.jar file://%CWD%/myOnto.owl file://%CWD%/edu.mit.visus.bibtex.owl
-
-java -jar ../../lib/procalign.jar file://%CWD%/myOnto.owl file://%CWD%/edu.mit.visus.bibtex.owl -o results\equal.rdf
-
-java -jar ../../lib/procalign.jar file://%CWD%/myOnto.owl file://%CWD%/edu.mit.visus.bibtex.owl -r fr.inrialpes.exmo.align.impl.renderer.HTMLRendererVisitor -o results\equal.html
-
-java -jar ../../lib/procalign.jar -i fr.inrialpes.exmo.align.impl.method.StringDistAlignment -DstringFunction=levenshteinDistance file://%CWD%/myOnto.owl file://%CWD%/edu.mit.visus.bibtex.owl -o results\levenshtein.rdf
-
-java -jar ../../lib/procalign.jar -i fr.inrialpes.exmo.align.impl.method.StringDistAlignment -DstringFunction=levenshteinDistance file://%CWD%/myOnto.owl file://%CWD%/edu.mit.visus.bibtex.owl -r fr.inrialpes.exmo.align.impl.renderer.HTMLRendererVisitor -o results\levenshtein.html
-
-java -jar ../../lib/procalign.jar -i fr.inrialpes.exmo.align.impl.method.StringDistAlignment -DstringFunction=smoaDistance file://%CWD%/myOnto.owl file://%CWD%/edu.mit.visus.bibtex.owl -o results\SMOA.rdf
-
-java -jar ../../lib/procalign.jar -i fr.inrialpes.exmo.align.impl.method.StringDistAlignment -DstringFunction=smoaDistance file://%CWD%/myOnto.owl file://%CWD%/edu.mit.visus.bibtex.owl -r fr.inrialpes.exmo.align.impl.renderer.HTMLRendererVisitor -o results\SMOA.html
-
-java -jar ../../lib/procalign.jar -Dwndict=%WNDIR% -i fr.inrialpes.exmo.align.ling.JWNLAlignment file://%CWD%/myOnto.owl file://%CWD%/edu.mit.visus.bibtex.owl -o results\jwnl.rdf
-
-java -jar ../../lib/procalign.jar -Dwndict=%WNDIR% -i fr.inrialpes.exmo.align.ling.JWNLAlignment file://%CWD%/myOnto.owl file://%CWD%/edu.mit.visus.bibtex.owl -r fr.inrialpes.exmo.align.impl.renderer.HTMLRendererVisitor -o results\jwnl.html
-
-rem #####################
-rem # Manipulating
-
-java -jar ../../lib/procalign.jar -i fr.inrialpes.exmo.align.impl.method.StringDistAlignment -DstringFunction=levenshteinDistance -t 0.33 file://%CWD%/myOnto.owl file://%CWD%/edu.mit.visus.bibtex.owl -o results\levenshtein33.rdf
-
-java -jar ../../lib/procalign.jar -i fr.inrialpes.exmo.align.impl.method.StringDistAlignment -DstringFunction=levenshteinDistance -t 0.33 file://%CWD%/myOnto.owl file://%CWD%/edu.mit.visus.bibtex.owl -r fr.inrialpes.exmo.align.impl.renderer.HTMLRendererVisitor -o results\levenshtein33.html
-
-java -jar ../../lib/procalign.jar -i fr.inrialpes.exmo.align.impl.method.StringDistAlignment -DstringFunction=smoaDistance -t 0.5 file://%CWD%/myOnto.owl file://%CWD%/edu.mit.visus.bibtex.owl -o results\SMOA5.rdf
-
-java -jar ../../lib/procalign.jar -i fr.inrialpes.exmo.align.impl.method.StringDistAlignment -DstringFunction=smoaDistance -t 0.5 file://%CWD%/myOnto.owl file://%CWD%/edu.mit.visus.bibtex.owl -r fr.inrialpes.exmo.align.impl.renderer.HTMLRendererVisitor -o results\SMOA5.html
-
-java -cp ../../lib/procalign.jar fr.inrialpes.exmo.align.util.ParserPrinter -i results\SMOA5.rdf -o results\AOMS5.rdf
-
-java -cp ../../lib/procalign.jar fr.inrialpes.exmo.align.util.ParserPrinter -i results\SMOA5.rdf -r fr.inrialpes.exmo.align.impl.renderer.HTMLRendererVisitor -o results\AOMS5.html
-
-rem #####################
-rem # Outputing
-
-java -cp ../../lib/procalign.jar fr.inrialpes.exmo.align.util.ParserPrinter results\SMOA5.rdf -r fr.inrialpes.exmo.align.impl.renderer.OWLAxiomsRendererVisitor
-
-java -cp ../../lib/procalign.jar fr.inrialpes.exmo.align.util.ParserPrinter results\SMOA5.rdf -r fr.inrialpes.exmo.align.impl.renderer.SWRLRendererVisitor
-
-java -cp ../../lib/procalign.jar fr.inrialpes.exmo.align.util.ParserPrinter results\SMOA5.rdf -r fr.inrialpes.exmo.align.impl.renderer.XSLTRendererVisitor -o results\SMOA5.xsl
-
-xsltproc results\SMOA5.xsl data.xml > results\data.xml
-
-
-rem #####################
-rem # Evaluating
-
-java -cp ../../lib/procalign.jar fr.inrialpes.exmo.align.util.ParserPrinter refalign.rdf -r fr.inrialpes.exmo.align.impl.renderer.HTMLRendererVisitor -o results\refalign.html
-
-java -cp ../../lib/procalign.jar fr.inrialpes.exmo.align.util.EvalAlign -i fr.inrialpes.exmo.align.impl.eval.PRecEvaluator file://%CWD%/refalign.rdf file://%CWD%/results/equal.rdf
-
-java -cp ../../lib/procalign.jar fr.inrialpes.exmo.align.util.EvalAlign -i fr.inrialpes.exmo.align.impl.eval.PRecEvaluator file://%CWD%/refalign.rdf file://%CWD%/results/levenshtein33.rdf
-
-rem # This is for printing distance matrix
-rem #java -jar ../../lib/Procalign.jar file://%CWD%/rdf/myOnto.owl file://%CWD%/rdf/edu.mit.visus.bibtex.owl -i fr.inrialpes.exmo.align.impl.method.StringDistAlignment -DstringFunction=levenshteinDistance -DprintMatrix=1 -o /dev/null > matrix.tex
-
-copy refalign.rdf results
-
-java -cp ../../lib/procalign.jar fr.inrialpes.exmo.align.util.GroupEval -r refalign.rdf -l "refalign,equal,SMOA,SMOA5,levenshtein,levenshtein33" -c prf -o results\eval.html
-
-
-rem #####################
-rem # Embedding
-
-javac -classpath ../../lib/align.jar;../../lib/procalign.jar;results -d results Skeleton.java
-
-java -cp ../../lib/procalign.jar;results Skeleton file://%CWD%/myOnto.owl file://%CWD%/edu.mit.visus.bibtex.owl
-
-javac -classpath ../../lib/align.jar;../../lib/procalign.jar -d results MyApp.java
-
-java -cp ../../lib/procalign.jar;results MyApp file://%CWD%/myOnto.owl file://%CWD%/edu.mit.visus.bibtex.owl
-
-

html/tutorial/script.sh

-#!/bin/csh
-
-#####################
-# Preparation
-
-#mkdir alignapi
-#cd alignapi
-#unzip align*.zip
-#java -jar lib/procalign.jar --help
-#cd html/tutorial
-setenv CWD `pwd`
-setenv WNDIR ../../../WordNet-2.0/dict
-
-/bin/rm results/*
-
-#####################
-# Matching
-
-java -jar ../../lib/procalign.jar file://$CWD/myOnto.owl file://$CWD/edu.mit.visus.bibtex.owl
-
-java -jar ../../lib/procalign.jar file://$CWD/myOnto.owl file://$CWD/edu.mit.visus.bibtex.owl -o results/equal.rdf
-
-java -jar ../../lib/procalign.jar file://$CWD/myOnto.owl file://$CWD/edu.mit.visus.bibtex.owl -r fr.inrialpes.exmo.align.impl.renderer.HTMLRendererVisitor -o results/equal.html
-
-java -jar ../../lib/procalign.jar -i fr.inrialpes.exmo.align.impl.method.StringDistAlignment -DstringFunction=levenshteinDistance file://$CWD/myOnto.owl file://$CWD/edu.mit.visus.bibtex.owl -o results/levenshtein.rdf
-
-java -jar ../../lib/procalign.jar -i fr.inrialpes.exmo.align.impl.method.StringDistAlignment -DstringFunction=levenshteinDistance file://$CWD/myOnto.owl file://$CWD/edu.mit.visus.bibtex.owl -o results/levenshtein.rdf -r fr.inrialpes.exmo.align.impl.renderer.HTMLRendererVisitor -o results/levenshtein.html
-
-java -jar ../../lib/procalign.jar -i fr.inrialpes.exmo.align.impl.method.StringDistAlignment -DstringFunction=smoaDistance file://$CWD/myOnto.owl file://$CWD/edu.mit.visus.bibtex.owl -o results/SMOA.rdf
-
-java -jar ../../lib/procalign.jar -i fr.inrialpes.exmo.align.impl.method.StringDistAlignment -DstringFunction=smoaDistance file://$CWD/myOnto.owl file://$CWD/edu.mit.visus.bibtex.owl -o results/SMOA.rdf -r fr.inrialpes.exmo.align.impl.renderer.HTMLRendererVisitor -o results/SMOA.html
-
-java -jar ../../lib/procalign.jar -Dwndict=$WNDIR -i fr.inrialpes.exmo.align.ling.JWNLAlignment file://$CWD/myOnto.owl file://$CWD/edu.mit.visus.bibtex.owl -o results/jwnl.rdf
-
-java -jar ../../lib/procalign.jar -Dwndict=$WNDIR -i fr.inrialpes.exmo.align.ling.JWNLAlignment file://$CWD/myOnto.owl file://$CWD/edu.mit.visus.bibtex.owl -o results/jwnl.rdf -r fr.inrialpes.exmo.align.impl.renderer.HTMLRendererVisitor -o results/jwnl.html
-
-#####################
-# Manipulating
-
-java -jar ../../lib/procalign.jar -i fr.inrialpes.exmo.align.impl.method.StringDistAlignment -DstringFunction=levenshteinDistance -t 0.33 file://$CWD/myOnto.owl file://$CWD/edu.mit.visus.bibtex.owl -o results/levenshtein33.rdf
-
-java -jar ../../lib/procalign.jar -i fr.inrialpes.exmo.align.impl.method.StringDistAlignment -DstringFunction=levenshteinDistance -t 0.33 file://$CWD/myOnto.owl file://$CWD/edu.mit.visus.bibtex.owl -o results/levenshtein33.rdf -r fr.inrialpes.exmo.align.impl.renderer.HTMLRendererVisitor -o results/levenshtein33.html
-
-java -jar ../../lib/procalign.jar -i fr.inrialpes.exmo.align.impl.method.StringDistAlignment -DstringFunction=smoaDistance -t 0.5 file://$CWD/myOnto.owl file://$CWD/edu.mit.visus.bibtex.owl -o results/SMOA5.rdf
-
-java -jar ../../lib/procalign.jar -i fr.inrialpes.exmo.align.impl.method.StringDistAlignment -DstringFunction=smoaDistance -t 0.5 file://$CWD/myOnto.owl file://$CWD/edu.mit.visus.bibtex.owl -o results/SMOA5.rdf -r fr.inrialpes.exmo.align.impl.renderer.HTMLRendererVisitor -o results/SMOA5.html
-
-java -cp ../../lib/procalign.jar fr.inrialpes.exmo.align.util.ParserPrinter results/SMOA5.rdf -i -o results/AOMS5.rdf
-
-java -cp ../../lib/procalign.jar fr.inrialpes.exmo.align.util.ParserPrinter results/SMOA5.rdf -i -o results/AOMS5.rdf -r fr.inrialpes.exmo.align.impl.renderer.HTMLRendererVisitor -o results/AOMS5.html
-
-#####################
-# Outputing
-
-java -cp ../../lib/procalign.jar fr.inrialpes.exmo.align.util.ParserPrinter results/SMOA5.rdf -r fr.inrialpes.exmo.align.impl.renderer.OWLAxiomsRendererVisitor
-
-java -cp ../../lib/procalign.jar fr.inrialpes.exmo.align.util.ParserPrinter results/SMOA5.rdf -r fr.inrialpes.exmo.align.impl.renderer.SWRLRendererVisitor
-
-java -cp ../../lib/procalign.jar fr.inrialpes.exmo.align.util.ParserPrinter results/SMOA5.rdf -r fr.inrialpes.exmo.align.impl.renderer.XSLTRendererVisitor -o results/SMOA5.xsl
-
-xsltproc results/SMOA5.xsl data.xml > results/data.xml
-
-#####################
-# Evaluating
-
-java -cp ../../lib/procalign.jar fr.inrialpes.exmo.align.util.ParserPrinter refalign.rdf -r fr.inrialpes.exmo.align.impl.renderer.HTMLRendererVisitor -o results/refalign.html
-
-java -cp ../../lib/procalign.jar fr.inrialpes.exmo.align.util.EvalAlign -i fr.inrialpes.exmo.align.impl.eval.PRecEvaluator file://$CWD/refalign.rdf file://$CWD/results/equal.rdf
-
-java -cp ../../lib/procalign.jar fr.inrialpes.exmo.align.util.EvalAlign -i fr.inrialpes.exmo.align.impl.eval.PRecEvaluator file://$CWD/refalign.rdf file://$CWD/results/levenshtein33.rdf
-
-# This is for printing distance matrix
-#java -jar ../../lib/Procalign.jar file://$CWD/rdf/myOnto.owl file://$CWD/rdf/edu.mit.visus.bibtex.owl -i fr.inrialpes.exmo.align.impl.method.StringDistAlignment -DstringFunction=levenshteinDistance -DprintMatrix=1 -o /dev/null > matrix.tex
-
-cp refalign.rdf results
-
-java -cp ../../lib/procalign.jar fr.inrialpes.exmo.align.util.GroupEval -r refalign.rdf -l "refalign,equal,SMOA,SMOA5,levenshtein,levenshtein33" -c prf -o results/eval.html
-
-#####################
-# Embedding
-
-javac -classpath ../../lib/align.jar:../../lib/procalign.jar -d results Skeleton.java
-
-java -cp ../../lib/Procalign.jar:results Skeleton file://$CWD/myOnto.owl file://$CWD/edu.mit.visus.bibtex.owl
-
-javac -classpath ../../lib/align.jar:../../lib/procalign.jar -d results MyApp.java
-
-java -cp ../../lib/Procalign.jar:results MyApp file://$CWD/myOnto.owl file://$CWD/edu.mit.visus.bibtex.owl > results/MyApp.owl