From 02813298a5ed78af9d2da3d88f9710f73890a8c7 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?J=C3=A9r=C3=B4me=20Euzenat?= <Jerome.Euzenat@inria.fr>
Date: Tue, 11 Nov 2014 17:47:40 +0000
Subject: [PATCH] - improved parameter control (output directory)
---
src/fr/inrialpes/exmo/align/cli/GroupAggreg.java | 11 ++++++++++-
1 file changed, 10 insertions(+), 1 deletion(-)
diff --git a/src/fr/inrialpes/exmo/align/cli/GroupAggreg.java b/src/fr/inrialpes/exmo/align/cli/GroupAggreg.java
index 86df4986..92fe4b0a 100644
--- a/src/fr/inrialpes/exmo/align/cli/GroupAggreg.java
+++ b/src/fr/inrialpes/exmo/align/cli/GroupAggreg.java
@@ -151,6 +151,14 @@ public class GroupAggreg extends CommonCLI {
System.exit( -1 );
}
+ // check that dirName exist and is writable
+ File outDir = new File( dirName );
+ if ( !outDir.isDirectory() || !outDir.canWrite() ) {
+ logger.error( "Directory {} must exist and be writable", dirName );
+ throw new AlignmentException( "Cannot output to "+dirName );
+ }
+
+ // Run it
iterateDirectories();
}
@@ -215,9 +223,10 @@ public class GroupAggreg extends CommonCLI {
}
/**
- * This does not only print the results but compute the average as well
+ * Print the aggregated alignment, it is not void...
*/
public void print( Alignment al, String outputfilename ) {
+ if ( al == null ) return;
PrintWriter writer = null;
try {
writer = new PrintWriter (
--
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