Commit c6624dc6 authored by FAGES Francois's avatar FAGES Francois

doc

parent a5b39258
......@@ -9,9 +9,12 @@
]
).
:- doc('Bipartite molecule-influence graphs can be associated to both influence models and reaction systems. The influence graph of a reaction system is an abstraction defined from the stoichiometry of the reactions, which is equivalent, under general conditions, to the influence graph defined by the signs of the Jacobian matrix of the ODEs \\cite{FS08fmsb,FGS15tcs}.').
:- devdoc('\\section{Commands}').
:- devcom('FF: positive and negative influences should be distinguished. It is not the case yet.').
influence_graph :-
biocham_command,
......
......@@ -13,6 +13,8 @@
:- devdoc('\\section{Commands}').
:- devcom('FF: Strange behavior on influence models, draw_reactions opens a widget !').
:- devcom('FF: It would be nice to have a notion of input/output and draw graphs accordingly, with inputs on top and outputs bottom in all (reaction or influence) graphs.
The input species could be those present at initial_state. The output species could be those not reactant (nor catalyst) of any reaction, nor source of any nfluence.
......
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