Commits · a3911976cf28301efed2a71327313374e2da2692 · Lifeware / biocham

08 Jul, 2016 1 commit
- handle molecules defined only in query · a3911976
  SOLIMAN Sylvain authored Jul 08, 2016
  
  a3911976
07 Jul, 2016 6 commits
- 3_inhib, ok · 14434ad2
  SOLIMAN Sylvain authored Jul 07, 2016
  
  14434ad2
- comment · 430df94d
  SOLIMAN Sylvain authored Jul 07, 2016
  
  430df94d
- added some shortcuts · 087e6e92
  SOLIMAN Sylvain authored Jul 07, 2016
  
  087e6e92
- added -> to CTL, and separated grammar · cd620813
  SOLIMAN Sylvain authored Jul 07, 2016
  
  cd620813
- full algorithm is in now · e1ea2c63
  SOLIMAN Sylvain authored Jul 07, 2016
  
  e1ea2c63
- fixing stuff again · 995af213
  SOLIMAN Sylvain authored Jul 07, 2016
  
  995af213
06 Jul, 2016 5 commits
- added the big example from Miguel, lead to a few bugfixes · f1f10a97
  SOLIMAN Sylvain authored Jul 06, 2016
  
  f1f10a97
- Proper rule-deletion from counter-ex (only! when available) · a4e26a9e
  SOLIMAN Sylvain authored Jul 06, 2016
  
  a4e26a9e
- Proper cleanup, even with instantiated Result for check_ctl_impl · 7a817565
  SOLIMAN Sylvain authored Jul 06, 2016
  
  7a817565
- deleting rules from trace, but only sometimes · c99fd1ac
  SOLIMAN Sylvain authored Jul 06, 2016
  
  c99fd1ac
- traces not removed at proper point · bcfdf1b4
  SOLIMAN Sylvain authored Jul 06, 2016
  
  bcfdf1b4
05 Jul, 2016 5 commits
- francois pattern, with additional constraint to avoid 2 for nothing or reverse · 100192ed
  SOLIMAN Sylvain authored Jul 05, 2016
  
  100192ed
- avoid empty model · 5a33c527
  SOLIMAN Sylvain authored Jul 05, 2016
  
  5a33c527
- Francois-style pattern, fails unit-tests with _ => a + b · b934030c
  SOLIMAN Sylvain authored Jul 05, 2016
  
  b934030c
- Miguel, first example · a664de27
  SOLIMAN Sylvain authored Jul 05, 2016
  
  a664de27
- better messages · ddf1d024
  SOLIMAN Sylvain authored Jul 05, 2016
  
  ddf1d024
04 Jul, 2016 9 commits
- comment · 0f10e7ba
  SOLIMAN Sylvain authored Jul 04, 2016
  
  0f10e7ba
- deleting rules, but without using the trace · 0c73e3d2
  SOLIMAN Sylvain authored Jul 04, 2016
  
  0c73e3d2
- cleanup and refactor, paving the way for rule deletion · a7a8c5f5
  SOLIMAN Sylvain authored Jul 04, 2016
  
  a7a8c5f5
- better testing/display · c6791a7e
  SOLIMAN Sylvain authored Jul 04, 2016
  
  c6791a7e
- more revisions · 2f1067f8
  SOLIMAN Sylvain authored Jul 04, 2016
  
  2f1067f8
- first success · e1161655
  SOLIMAN Sylvain authored Jul 04, 2016
  
  e1161655
- forgot to add the files · 7a7349c9
  SOLIMAN Sylvain authored Jul 04, 2016
  
  7a7349c9
- initial version, does not revise much · 1539a230
  SOLIMAN Sylvain authored Jul 04, 2016
  
  1539a230
- Absent molecules should still be enumerated · 1fbf0b56
  SOLIMAN Sylvain authored Jul 04, 2016
  
  1fbf0b56
01 Jul, 2016 5 commits
- positive/negative boolean semantics · 61d729b2
  Sylvain Soliman authored Jul 01, 2016
  
  61d729b2
- added a test for derivation of quotient · f35655a1
  Sylvain Soliman authored Jul 01, 2016
  
  f35655a1
- Bugfix derivative of quotient · 094cef99
  Sylvain Soliman authored Jul 01, 2016
  
  094cef99
- Force output to be the only one to change for influences · 961f5b4b
  Sylvain Soliman authored Jul 01, 2016
  
  961f5b4b
- no more R · ba9622aa
  Sylvain Soliman authored Jul 01, 2016
  
  ba9622aa
30 Jun, 2016 1 commit
- use option/3 for check_ctl options · 0eab21f6
  Sylvain Soliman authored Jun 30, 2016
  
  0eab21f6
29 Jun, 2016 4 commits
- separate slow and unit tests · ded6969b
  Sylvain Soliman authored Jun 29, 2016
  
  ded6969b
- LV examples from Francois · 887cc31b
  Sylvain Soliman authored Jun 29, 2016
  
  887cc31b
- and now with self loops · 298e93a4
  Sylvain Soliman authored Jun 29, 2016
  
  298e93a4
- David's faithful NuSMV implementation of BIOCHAM's boolean transition systems (no loop yet) · 7e171c2b
  Sylvain Soliman authored Jun 29, 2016
  
  7e171c2b
26 Jun, 2016 1 commit
- Fixed: Quoting of conditions in SMV influences · fedab03a
  Thierry Martinez authored Jun 26, 2016
  
  fedab03a
21 Jun, 2016 1 commit
- Proper SBML-qual import as influences, yay! · 197cfed1
  Sylvain Soliman authored Jun 21, 2016
  
  197cfed1
20 Jun, 2016 2 commits
- moar parsing, only missing default case · 618accbc
  Sylvain Soliman authored Jun 20, 2016
  
  618accbc
- Some SBML-qual parsing · 352c1175
  Sylvain Soliman authored Jun 20, 2016
  
  352c1175