Skip to content
GitLab
Projects
Groups
Snippets
/
Help
Help
Support
Community forum
Keyboard shortcuts
?
Submit feedback
Contribute to GitLab
Sign in
Toggle navigation
Menu
Open sidebar
Lifeware
biocham
Commits
fc428218
Commit
fc428218
authored
Jan 26, 2019
by
FAGES Francois
Browse files
bugcorrection
parent
40409d22
Changes
6
Expand all
Hide whitespace changes
Inline
Side-by-side
library/examples/C2-19-Biochemical-Programming/TD4_genetic_switch.ipynb
View file @
fc428218
This source diff could not be displayed because it is too large. You can
view the blob
instead.
library/examples/C2-19-Biochemical-Programming/TD5_protein_switch.ipynb
View file @
fc428218
This diff is collapsed.
Click to expand it.
multistability.pl
View file @
fc428218
...
...
@@ -968,9 +968,9 @@ doc('\\end{example}
true
;
(
write
(
'
P
ermutation
used
: '
),
write
(
'
(using p
ermutation
of species
: '
),
write
(
Swaps
),
write
(
'\n'
)
write
(
'
)
\n'
)
)
),
loop_gauss_system
(
System
),
...
...
@@ -982,7 +982,7 @@ doc('\\end{example}
;
(
conserv_names_to_id
(
Species_to_change_sign
,
Species_to_change_sign_id
),
write
(
'
With
change of sign for species : '
),
write
(
'
(using
change of sign for species : '
),
forall
(
member
(
S
,
Species_to_change_sign
),
(
...
...
@@ -991,7 +991,7 @@ doc('\\end{example}
)
),
debug
(
multistability
,
"~nDone in ~ws"
,
[
Diff_time
]),
write
(
'\n'
)
write
(
'
)
\n'
)
)
)
)
...
...
@@ -1005,7 +1005,7 @@ doc('\\end{example}
;
true
),
write
(
'There may be multistationarity, positive circuit detected'
),
write
(
'There may be multistationarity, positive circuit detected
.
'
),
debug
(
multistability
,
"~nDone in ~ws"
,
[
Diff_time
]),
write
(
'\n'
)
)
...
...
numerical_simulation.pl
View file @
fc428218
...
...
@@ -290,7 +290,8 @@ enumerate_variables(Header: x(VariableIndex)) :-
VariableMax
is
VariableCount
-
1
,
between
(
0
,
VariableMax
,
VariableIndex
),
variable
(
Molecule
,
VariableIndex
),
format
(
atom
(
Header
),
'~a'
,
[
Molecule
]).
% format(atom(Header), '~a', [Molecule]).
format
(
atom
(
Header
),
'~w'
,
[
Molecule
]).
enumerate_nonconstant_parameters
(
Events
,
Header
:
Parameter
)
:-
...
...
toc.org
View file @
fc428218
...
...
@@ -18,14 +18,13 @@
- objects.pl
** Aliases
- aliases.pl
** Molecules
** Molecules
and initial state
- molecules.pl
- initial_state.pl
** Parameters
- parameters.pl
** Functions
- functions.pl
** Initial state
- initial_state.pl
* Reaction Networks
#** Syntax of reactions and transport rules
- reaction_rules.pl
...
...
tropical.pl
View file @
fc428218
...
...
@@ -361,7 +361,7 @@ epsilon_degree(D, A) :-
(
D
=
\
=
0
->
format
(
atom
(
A
),
"ε^~p * "
,
[
D
])
format
(
atom
(
A
),
"ε^
(
~p
)
* "
,
[
D
])
;
A
=
''
).
...
...
Write
Preview
Supports
Markdown
0%
Try again
or
attach a new file
.
Cancel
You are about to add
0
people
to the discussion. Proceed with caution.
Finish editing this message first!
Cancel
Please
register
or
sign in
to comment