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Lifeware
biocham
Commits
831b1d38
Commit
831b1d38
authored
Jun 24, 2020
by
Mathieu Hemery
Browse files
Correct some difficulties with parsing for model 3 and 4
parent
b148a77f
Changes
2
Hide whitespace changes
Inline
Side-by-side
ode.pl
View file @
831b1d38
...
...
@@ -54,6 +54,7 @@
ode
/
3
,
ode_add_expression_to_molecule
/
2
,
ode_predicate
/
1
,
remove_fraction
/
2
,
normalize_ode
/
1
]).
...
...
@@ -1336,7 +1337,7 @@ multiply_term(Num/Den, Denominator, NewNum) :-
multiply_term
(
Num
,
Denominator
,
NewNum
)
:-
mult_by
(
Num
,
Denominator
,
NewNum
).
mult_by
(
Num
,
[
Head
|
Tail
],
NNum
)
:-
mult_by
(
Num
,
[
Head
|
Tail
],
NNum
)
:-
!,
mult_by
(
Num
,
Tail
,
NumTempo
),
distribute
(
NumTempo
*
Head
,
NNum
).
mult_by
(
Num
,
[],
Num
).
...
...
@@ -1366,11 +1367,11 @@ normalize_ode(NormalForm) :-
normalize_expression
(
Expr
+
Term
,
ListVar
,
NExpr
+
NTerm
)
:-
!,
normalize_term
(
Term
,
ListVar
,
NTerm
),
normalize_expression
(
Expr
,
ListVar
,
NExpr
).
normalize_expression
(
Expr
-
Term
,
ListVar
,
NExpr
+
-
1
*
NTerm
)
:-
!,
normalize_term
(
Term
,
ListVar
,
NTerm
),
normalize_expression
(
Expr
-
Term
,
ListVar
,
NExpr
+
NTerm
)
:-
!,
normalize_term
(
Term
*
(
-
1
)
,
ListVar
,
NTerm
),
normalize_expression
(
Expr
,
ListVar
,
NExpr
).
normalize_expression
(
-
Term
,
ListVar
,
-
1
*
NTerm
)
:-
!,
normalize_term
(
Term
,
ListVar
,
NTerm
).
normalize_expression
(
-
Term
,
ListVar
,
NTerm
)
:-
!,
normalize_term
(
Term
*
(
-
1
)
,
ListVar
,
NTerm
).
normalize_expression
(
Term
,
ListVar
,
NTerm
)
:-
normalize_term
(
Term
,
ListVar
,
NTerm
).
...
...
@@ -1381,9 +1382,16 @@ normalize_term(Term, ListVar, NewTerm) :-
%! filter_denominator(Term, Numerator, Denominator)
filter_denominator
(
Term
*
X
^
N
,
Num
,
[
X
^
N
m
|
Den
])
:-
filter_denominator
(
Term
*
X
^
N
,
Num
,
[
NTer
m
|
Den
])
:-
number
(
N
),
N
<
0
,
!,
Nm
is
-
N
,
(
Nm
=
1
->
NTerm
=
X
;
NTerm
=
X
^
Nm
),
filter_denominator
(
Term
,
Num
,
Den
).
filter_denominator
(
Term
*
X
^
N
,
[
X
^
N
|
Num
],
Den
)
:-
!,
number
(
N
),
N
>
0
,
!,
...
...
@@ -1392,9 +1400,16 @@ filter_denominator(Term*X, [X|Num], Den) :- !,
filter_denominator
(
Term
,
Num
,
Den
).
filter_denominator
(
Term
/
X
,
Num
,
[
X
|
Den
])
:-
!,
filter_denominator
(
Term
,
Num
,
Den
).
filter_denominator
(
X
^
N
,
[],
[
X
^
N
m
])
:-
!,
filter_denominator
(
X
^
N
,
[],
[
NTer
m
])
:-
!,
number
(
N
),
N
<
0
,
!,
Nm
is
-
N
.
Nm
is
-
N
,
(
Nm
=
1
->
NTerm
=
X
;
NTerm
=
X
^
Nm
).
filter_denominator
(
X
,
[
X
],
[]).
...
...
ode.plt
View file @
831b1d38
...
...
@@ -96,4 +96,12 @@ test(
list_file_lines('test.tex', Lines),
delete_file('test.tex').
test(
'remove_fraction',[]) :-
remove_fraction(d(a)/dt = a/b, d(a)/dt = a),
remove_fraction(d(a)/dt = a/(b+c) + d, d(a)/dt = a + d*b + d*c),
remove_fraction(d(a)/dt = a/(b+c) + -1*d, d(a)/dt = a - d*b - d*c),
remove_fraction(d(a)/dt = a/b + c/d + e, d(a)/dt = a*d + c*b + e*b*d),
remove_fraction(d(a)/dt = a/b + c/d, d(a)/dt = a*d + c*b).
:- end_tests(ode).
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