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Lifeware
biocham
Commits
7a1000e0
Commit
7a1000e0
authored
Oct 20, 2015
by
Thierry Martinez
Browse files
Reaction graphs
parent
49afd4b8
Changes
4
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doc.pl
View file @
7a1000e0
...
...
@@ -165,15 +165,6 @@ goto_level(Level) :-
).
indent
(
Doc
,
Level
)
:-
\
+
(
between
(
0
,
Level
,
_
),
\
+
(
write
(
Doc
,
' '
)
)
).
increment_counter
:-
nb_getval
(
current_counters
,
OldCounters
),
append
(
HigherCounters
,
[
LastCounter
],
OldCounters
),
...
...
install-macos.sh
View file @
7a1000e0
#!/bin/sh
brew
install
swi-prolog gsl libsbml gnuplot
brew
install
swi-prolog gsl libsbml gnuplot
graphviz
models.pl
View file @
7a1000e0
...
...
@@ -491,10 +491,23 @@ optional(Item, List) :-
list_items
(
Options
)
:-
all_ids
(
Options
,
Ids
),
list_ids
(
Ids
).
list_ids
(
Options
,
Ids
).
list_ids
(
Ids
)
:-
list_ids
([],
Ids
).
list_ids
(
Options
,
Ids
)
:-
optional
(
indent
:
Indent
,
Options
),
default
(
Indent
,
0
),
(
member
(
recursive
,
Options
)
->
Recursive
=
yes
;
Recursive
=
no
),
retractall
(
listed_item
(
_
,
_
)),
set_counter
(
list_item_counter
,
0
),
\
+
(
...
...
@@ -503,7 +516,16 @@ list_ids(Ids) :-
count
(
list_item_counter
,
Counter
),
assertz
(
listed_item
(
Counter
,
Id
)),
item
(
Id
,
_
,
_
,
Item
),
format
(
'[~d] ~w\n'
,
[
Counter
,
Item
])
indent
(
Indent
),
format
(
'[~d] ~w\n'
,
[
Counter
,
Item
]),
(
Recursive
=
yes
->
SubIndent
is
Indent
+
1
,
list_items
([
indent
:
SubIndent
,
recursive
,
parent
:
Id
])
;
true
)
)
).
...
...
util.pl
View file @
7a1000e0
...
...
@@ -9,7 +9,9 @@
list_to_equals
/
2
,
list
/
1
,
nth0_eqq
/
3
,
executable_filename
/
1
executable_filename
/
1
,
indent
/
1
,
indent
/
2
]).
name_variables
(
L
)
:-
...
...
@@ -108,6 +110,19 @@ executable_filename(Filename) :-
current_prolog_flag(os_argv, [_Swipl, _X, Filename | _]).
indent(Level) :-
indent(user_output, Level).
indent(Stream, Level) :-
\+ (
between(0, Level, _),
\+ (
write(Stream, '
'
)
)
).
user
:
message_hook
(
_Msg
,
warning
,
_Lines
)
:-
catch
(
count
(
warnings
,
_
),
...
...
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