Commit 3f577a6f authored by FAGES Francois's avatar FAGES Francois
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<h1>The Biochemical Abstract Machine BIOCHAM</h1>
<h1>version 4.1 Nov 2017</h1>
<h1>version 4.1.5 March 2018</h1>
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<p>
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<p>
Biocham 4 was released in September
2017. Biocham 4 is a complete rewriting of Biocham 3 for easier maintenance.
It also integrates new features, in particular concerning influence systems and the synthesis of reaction systems,
but also lacks some features of Biocham 3 concerning sensitivity analysis, robustness measures and the graphical user interface.
It integrates new features, in particular concerning influence systems, the synthesis of reaction systems, and robustness optimisation.
It also lacks some features of Biocham 3 concerning model comparisons (by subgraph epimorphisms), sensitivity analyses and the graphical user interface.
For these reasons Biocham 3 is still active on <a href="http://lifeware.inria.fr/biocham3">http://lifeware.inria.fr/biocham3</a> but no longer maintained.
<h2>Overview</h2>
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<p>Feedback on the use of Biocham in applications, research or teaching
are particularly welcomed. </p>
<h2>Biocham notebook online</h2>
<p> Try the online <a href="http://lifeware.inria.fr:8888/notebooks/examples/tutorial/tutorial17cmsb.ipynb">tutorial notebook</a> presented at <a href="https://www.etit.tu-darmstadt.de/cmsb2017/cmsb_2/home/index.en.jsp"> CMSB 2017</a></p>
<p> Try the <a href="http://lifeware.inria.fr:8888/notebooks/examples/tutorial/tutorial17cmsb.ipynb">tutorial</a> notebook presented at <a href="https://assb.lri.fr/fr/programme.php"> aSSB 2018</a> or the <a href="http://lifeware.inria.fr:8888/notebooks/examples/tutorial/tutorial17cmsb.ipynb">historical tutorial</a> notebook presented at <a href="https://www.etit.tu-darmstadt.de/cmsb2017/cmsb_2/home/index.en.jsp"> CMSB 2017</a></p>
<p>
Try the other examples, or upload your own ones, on our <a href="http://lifeware.inria.fr:8888/">online notebook</a>.
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