diff --git a/examples/aevol_basic/param.in b/examples/aevol_basic/param.in index 2f7dab9259a9ca5c6836bf7d19e86878d4fffb31..6c38a108489009c296a56a140267d4dfd0762e2a 100644 --- a/examples/aevol_basic/param.in +++ b/examples/aevol_basic/param.in @@ -2,24 +2,25 @@ # AEVOL PARAMATERS # ################################### -##### 1. Initial setup ############ STRAIN_NAME basic_example SEED 7250909 INIT_POP_SIZE 1024 WORLD_SIZE 32 32 INIT_METHOD ONE_GOOD_GENE CLONE +##### Initial setup ############ CHROMOSOME_INITIAL_LENGTH 5000 FUZZY_FLAVOR DISCRETE_DOUBLE_TABLE -##### 2. Selection ################ + +##### Selection ################ SELECTION_SCHEME fitness_proportionate 1000 -##### 3. Mutation rates ########### +##### Mutation rates ########### POINT_MUTATION_RATE 1e-6 SMALL_INSERTION_RATE 1e-6 SMALL_DELETION_RATE 1e-6 MAX_INDEL_SIZE 6 -##### 4. Rearrangement rates (w/o alignements) +##### Rearrangement rates (w/o alignements) WITH_ALIGNMENTS false DUPLICATION_RATE 1e-6 DELETION_RATE 1e-6 @@ -27,28 +28,28 @@ TRANSLOCATION_RATE 1e-6 INVERSION_RATE 1e-6 -##### 5. Population Structure ##### +##### Population Structure ##### -##### 6. Target function ########## +##### Target function ########## ENV_SAMPLING 300 ENV_ADD_GAUSSIAN 1.2 0.52 0.12 ENV_ADD_GAUSSIAN -1.4 0.5 0.07 ENV_ADD_GAUSSIAN 0.3 0.8 0.03 MAX_TRIANGLE_WIDTH 0.033333333 -##### 7. Recording ################ BACKUP_STEP 1000 TREE_STEP 1000 RECORD_TREE true RECORD_LIGHT_TREE false MORE_STATS false +##### Recording ################ -##### 8. Environment variation #### +##### Environment variation #### ENV_VARIATION none -##### 9. Phenotypic axis ########## +##### Phenotypic axis ########## ENV_AXIS_FEATURES METABOLISM