diff --git a/examples/basic_stdlist/param.in b/examples/basic_stdlist/param.in new file mode 100644 index 0000000000000000000000000000000000000000..ef2bbfc7105888da32838d54263711c4ba2f390c --- /dev/null +++ b/examples/basic_stdlist/param.in @@ -0,0 +1,64 @@ +################################### +# AEVOL PARAMATERS # +################################### + +##### 1. Initial setup ############ +STRAIN_NAME basic_example +SEED 7250909 +INIT_POP_SIZE 1024 +WORLD_SIZE 32 32 +INIT_METHOD ONE_GOOD_GENE CLONE +CHROMOSOME_INITIAL_LENGTH 5000 +FUZZY_FLAVOR 1 +SIMD_METADATA_FLAVOR list + +##### 2. Selection ################ +SELECTION_SCHEME fitness_proportionate 1000 + +##### 3. Mutation rates ########### +POINT_MUTATION_RATE 1e-6 +SMALL_INSERTION_RATE 1e-6 +SMALL_DELETION_RATE 1e-6 +MAX_INDEL_SIZE 6 + +##### 4. Rearrangement rates (w/o alignements) +WITH_ALIGNMENTS false +DUPLICATION_RATE 1e-5 +DELETION_RATE 1e-5 +TRANSLOCATION_RATE 1e-5 +INVERSION_RATE 1e-5 + + +##### 5. Population Structure ##### + + +##### 6. Target function ########## +ENV_SAMPLING 300 +ENV_ADD_GAUSSIAN 1.2 0.52 0.12 +ENV_ADD_GAUSSIAN -1.4 0.5 0.07 +ENV_ADD_GAUSSIAN 0.3 0.8 0.03 +MAX_TRIANGLE_WIDTH 0.033333333 + +##### 7. Recording ################ +BACKUP_STEP 1000 +TREE_STEP 1000 +RECORD_TREE true +RECORD_LIGHT_TREE false +MORE_STATS false + + +##### 8. Environment variation #### +ENV_VARIATION none + +##### 9. Phenotypic axis ########## +ENV_AXIS_FEATURES METABOLISM + +##### 10. Secretion ############### + +##### 11. Plasmids ################ +ALLOW_PLASMIDS false +WITH_TRANSFER false + + + +