From e3bbef3f1518e258d038d8f869794a7e3f6f638b Mon Sep 17 00:00:00 2001
From: Guillaume Cerutti <guillaume.cerutti@inria.fr>
Date: Tue, 5 Nov 2024 14:16:05 +0100
Subject: [PATCH] fix pyvista surface mesh
---
.../algorithm/meshFromImage/surfaceMeshPyvista.py | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/src/gnomon_package_tissueimagemesh/algorithm/meshFromImage/surfaceMeshPyvista.py b/src/gnomon_package_tissueimagemesh/algorithm/meshFromImage/surfaceMeshPyvista.py
index d758fff..d7b3e32 100644
--- a/src/gnomon_package_tissueimagemesh/algorithm/meshFromImage/surfaceMeshPyvista.py
+++ b/src/gnomon_package_tissueimagemesh/algorithm/meshFromImage/surfaceMeshPyvista.py
@@ -81,7 +81,7 @@ class surfaceMeshPyvista(gnomonAbstractMeshFromImage):
self._parameters['resampling_voxelsize'].setValue(4*np.mean(img.voxelsize))
def run(self):
- self.set_max_progress(4*len(self.img))
+ self.set_max_progress(5*len(self.img))
self.topomesh = {}
for time in self.img.keys():
@@ -152,7 +152,7 @@ class surfaceMeshPyvista(gnomonAbstractMeshFromImage):
image_mesh = image_mesh.extract_points(
up_facing_points,
include_cells=True,
- ).extract_surface()
+ ).extract_largest().extract_surface()
self.increment_progress()
self.set_progress_message(f"T {time} : Creating triangle mesh")
--
GitLab