#coding=utf8 ################################################################################ ### ### ### Created by Martin Genet, 2016-2019 ### ### ### ### École Polytechnique, Palaiseau, France ### ### ### ################################################################################ from builtins import range import dolfin import numpy import myPythonLibrary as mypy import myVTKPythonLibrary as myvtk import dolfin_dic as ddic ################################################################################ def compute_quadrature_degree_from_points_count( image_filename, mesh, compute_n_quad=False, deg_min=1, deg_max=20, verbose=1): image = myvtk.readImage( filename=image_filename, verbose=verbose-1) image_n_points = image.GetNumberOfPoints() image_dimension = myvtk.getImageDimensionality( image=image, verbose=verbose-1) ugrid = ddic.mesh2ugrid(mesh) n_cells = ugrid.GetNumberOfCells() (cell_locator, closest_point, generic_cell, k_cell, subId, dist) = myvtk.getCellLocator( mesh=ugrid, verbose=verbose-1) point = numpy.empty(3) n_pixels_per_cell = numpy.zeros(n_cells, dtype=int) for k_point in range(image_n_points): image.GetPoint(k_point, point) k_cell = cell_locator.FindCell(point) if (k_cell == -1): continue else: n_pixels_per_cell[k_cell] += 1 n_pixels_per_cell_max = max(n_pixels_per_cell) n_pixels_per_cell_avg = sum(n_pixels_per_cell)//n_cells #if (verbose): print("n_pixels_per_cell = "+str(n_pixels_per_cell)) #if (verbose): print("sum(n_pixels_per_cell) = "+str(sum(n_pixels_per_cell))) #if (verbose): print("n_pixels_per_cell_max = "+str(n_pixels_per_cell_max)) #if (verbose): print("n_pixels_per_cell_avg = "+str(n_pixels_per_cell_avg)) if (compute_n_quad): #n_quads = [] for degree in range(deg_min,deg_max+1): if (verbose): print("degree = "+str(degree)) n_quad = len(dolfin.FunctionSpace( mesh, dolfin.FiniteElement( family="Quadrature", cell=mesh.ufl_cell(), degree=degree, quad_scheme="default")).dofmap().dofs()) // len(mesh.cells()) if (verbose): print("n_quad = "+str(n_quad)) #if (n_quad > n_pixels_per_cell_max): break if (n_quad > n_pixels_per_cell_avg): break #n_quads.append(n_quad) #print(n_quads) else: if (image_dimension == 2): n_quads = [1, 3, 6, 6, 7, 12, 16, 25, 25, 36, 36, 49, 49, 64, 64, 81, 81, 100, 100, 121] elif (image_dimension == 3): n_quads = [1, 4, 5, 14, 15, 24, 64, 125, 125, 216, 216, 343, 343, 512, 512, 729, 729] #degree = numpy.searchsorted(n_quads, n_pixels_per_cell_max)+1 degree = numpy.searchsorted(n_quads, n_pixels_per_cell_avg)+1 return degree ################################################################################ def compute_quadrature_degree_from_integral( image_filename, mesh, deg_min=1, deg_max=10, tol=1e-2, n_under_tol=1, verbose=1): image = myvtk.readImage( filename=image_filename, verbose=verbose-1) image_dimension = myvtk.getImageDimensionality( image=image, verbose=verbose-1) assert (image_dimension in (2,3)),\ "image_dimension must be 2 or 3. Aborting." if (verbose): print("image_dimension = " + str(image_dimension)) dX = dolfin.dx(mesh) first_time = True k_under_tol = 0 for degree in range(deg_min,deg_max+1): if (verbose): print("degree = " + str(degree)) fe = dolfin.FiniteElement( family="Quadrature", cell=mesh.ufl_cell(), degree=degree, quad_scheme="default") if (image_dimension == 2): I0 = ddic.ExprIm2( filename=image_filename, element=fe) elif (image_dimension == 3): I0 = ddic.ExprIm3( filename=image_filename, element=fe) if not (first_time): I0_norm_old = I0_norm I0_norm = dolfin.assemble(I0**2 * dX, form_compiler_parameters={'quadrature_degree':degree})**(1./2) if (verbose): print("I0_norm = " + str(I0_norm)) if (first_time): first_time = False continue I0_norm_err = abs(I0_norm-I0_norm_old)/I0_norm_old if (verbose): print("I0_norm_err = " + str(I0_norm_err)) if (I0_norm_err < tol): k_under_tol += 1 else: k_under_tol = 0 if (k_under_tol >= n_under_tol): break return degree