# Copyright CNRS/Inria/UNS # Contributor(s): Eric Debreuve (since 2019), Morgane Nadal (2020) # # eric.debreuve@cnrs.fr # # This software is governed by the CeCILL license under French law and # abiding by the rules of distribution of free software. You can use, # modify and/ or redistribute the software under the terms of the CeCILL # license as circulated by CEA, CNRS and INRIA at the following URL # "http://www.cecill.info". # # As a counterpart to the access to the source code and rights to copy, # modify and redistribute granted by the license, users are provided only # with a limited warranty and the software's author, the holder of the # economic rights, and the successive licensors have only limited # liability. # # In this respect, the user's attention is drawn to the risks associated # with loading, using, modifying and/or developing or reproducing the # software by the user in light of its specific status of free software, # that may mean that it is complicated to manipulate, and that also # therefore means that it is reserved for developers and experienced # professionals having in-depth computer knowledge. Users are therefore # encouraged to load and test the software's suitability as regards their # requirements in conditions enabling the security of their systems and/or # data to be ensured and, more generally, to use and operate it in the # same conditions as regards security. # # The fact that you are presently reading this means that you have had # knowledge of the CeCILL license and that you accept its terms. from __future__ import annotations from brick.general.type import array_t, np_array_picker_h, py_array_picker_h, site_path_h from abc import abstractmethod from typing import Dict, List, Optional, Tuple class glial_cmp_t: # # extensions: connected downstream (i.e. going away from the soma) # __slots__ = ("uid", "sites", "connection_path", "extensions", "img_shape") def __init__(self): # for slot in self.__class__.__slots__: setattr(self, slot, None) # self.uid # type: Optional[int] # self.sites # type: Optional[np_array_picker_h] # self.connection_path # type: Optional[Dict[int, py_array_picker_h]] # self.extensions # type: Optional[List[glial_cmp_t]] # self.img_shape # type: Optional[Tuple[int, ...]] def InitializeFromMap(self, bmp: array_t, uid: int) -> None: # self.uid = uid # sites: might contain voxels that could be removed w/o breaking connectivity self.sites = bmp.nonzero() self.connection_path = {} self.extensions = [] self.img_shape = bmp.shape @property def has_extensions(self) -> bool: # return self.extensions.__len__() > 0 @abstractmethod def BackReferenceSoma(self, glial_cmp: glial_cmp_t) -> None: # pass