# Copyright CNRS/Inria/UNS # Contributor(s): Eric Debreuve (since 2019) # # eric.debreuve@cnrs.fr # # This software is governed by the CeCILL license under French law and # abiding by the rules of distribution of free software. You can use, # modify and/ or redistribute the software under the terms of the CeCILL # license as circulated by CEA, CNRS and INRIA at the following URL # "http://www.cecill.info". # # As a counterpart to the access to the source code and rights to copy, # modify and redistribute granted by the license, users are provided only # with a limited warranty and the software's author, the holder of the # economic rights, and the successive licensors have only limited # liability. # # In this respect, the user's attention is drawn to the risks associated # with loading, using, modifying and/or developing or reproducing the # software by the user in light of its specific status of free software, # that may mean that it is complicated to manipulate, and that also # therefore means that it is reserved for developers and experienced # professionals having in-depth computer knowledge. Users are therefore # encouraged to load and test the software's suitability as regards their # requirements in conditions enabling the security of their systems and/or # data to be ensured and, more generally, to use and operate it in the # same conditions as regards security. # # The fact that you are presently reading this means that you have had # knowledge of the CeCILL license and that you accept its terms. import skimage.morphology as mp_ data_path = "./data/DIO_6H_6_1.70bis_2.2_3.tif" with_plot = True soma_low_c = 0.15 soma_high_c = 0.7126 ext_low_c = 0.2 # 0.02 # 0.2 # ext_low_c = 9.0e-4 ext_high_c = 0.6 # 0.04 # 0.6 # high_ext = 8.0e-3 soma_selem_c = mp_.disk(2) max_straight_sq_dist_c = 30 ** 2 max_weighted_length_c = 20.0 min_area_c = 1000 in_parallel = False