diff --git a/dna_store.sh b/dna_store.sh
index 4b88d7b0e4bfff61bc4d68af72ef3e44850d5b33..aac5a8c04c41958aa5b1b03b430320cedf50ec58 100755
--- a/dna_store.sh
+++ b/dna_store.sh
@@ -139,7 +139,7 @@ simulation=$(get_container_param $container_path "simulation")
 
 if [ $simulation ]
 then
-	synthesis_script="$project_dir"/synthesis_modules/fragment_synthesis.py
+	synthesis_script="$project_dir"/synthesis_modules/synthesis_simulation.py
 	
 	for directory in "$container_path"/*/ ; do
 		call_function python3 "$synthesis_script" -i "$directory"/3_final_fragments.fasta -o "$directory"/4_synthesis.fasta -n $n_synth --i_error $i_error --d_error $d_error --s_error $s_error
@@ -155,7 +155,7 @@ fi
 
 if [ $simulation ]
 then
-	molecule_design_script="$project_dir"/synthesis_modules/fragment_assembly.py
+	molecule_design_script="$project_dir"/synthesis_modules/assembly_simulation.py
 	
 	assembly_type=$(get_container_param $container_path "assembly_type")
 	spacer=$(get_container_param $container_path "spacer")