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dnarXiv
Synthesis_Modules
Commits
bf3c176a
Commit
bf3c176a
authored
1 year ago
by
BOULLE Olivier
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mono primers couple for all storage
parent
64218c17
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eBlocks_design.py
+4
-2
4 additions, 2 deletions
eBlocks_design.py
with
4 additions
and
2 deletions
eBlocks_design.py
+
4
−
2
View file @
bf3c176a
...
@@ -269,8 +269,10 @@ def eBlocks_design(payload_fragments_dir_path: str, output_dir_path: str) -> Non
...
@@ -269,8 +269,10 @@ def eBlocks_design(payload_fragments_dir_path: str, output_dir_path: str) -> Non
print
(
len
(
compatible_primers_list
),
"
primers
"
)
print
(
len
(
compatible_primers_list
),
"
primers
"
)
# select a primers couples for each assembly
# select a primers couples for each assembly
selected_primers_list
=
pg
.
select_primers
(
compatible_primers_list
,
len
(
full_assembly_total_sequences
))
#TODO selected_primers_list = pg.select_primers(compatible_primers_list, len(full_assembly_total_sequences))
selected_primers_list
=
pg
.
select_primers
(
compatible_primers_list
,
1
)
# only 1 couple for all storage
selected_primers_list
=
selected_primers_list
*
len
(
full_assembly_total_sequences
)
# get a list of n times the same couple for the n molecules
assigned_primers_dict
=
{}
# to save which primers couple is assigned to which file
assigned_primers_dict
=
{}
# to save which primers couple is assigned to which file
if
len
(
selected_primers_list
)
<
2
*
len
(
full_assembly_total_sequences
):
# not enough primers couple
if
len
(
selected_primers_list
)
<
2
*
len
(
full_assembly_total_sequences
):
# not enough primers couple
...
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