update print, default repetition size

sequence_control.py

@@ -125,7 +125,7 @@ def get_forbidden_sequences() -> list:
     return forbidden_sequences
     
 
-def count_repetitions(sequence: str, repetition_size: int):
+def count_repetitions(sequence: str, repetition_size: int = 8):
     
     repetition_dict = {}
     
@@ -142,7 +142,7 @@ def count_repetitions(sequence: str, repetition_size: int):
     repetition_count = 0
     for key, index_list in repetition_dict.items():
         if len(index_list) > 1:
-            print(key, str(index_list))
+            #print(key, str(index_list))
             repetition_count += 1
             
             for index in index_list:
@@ -150,10 +150,14 @@ def count_repetitions(sequence: str, repetition_size: int):
     
 
             
-    print(copy_sequence, str(len(copy_sequence)))
-    print(copy_sequence.count("_")/len(copy_sequence))
+    #print(copy_sequence, str(len(copy_sequence)))
+    print("repeted regions :",str(round(100*copy_sequence.count("_")/len(copy_sequence), 2)),"%")
     
 
+def sanity_check(sequence: str):
+    sequence_check(sequence, min_GC=40, max_GC=60, verbose=True)
+    count_repetitions(sequence)
+    
 
 # =================== main ======================= #
 if __name__ == '__main__':