From ddcba93f9ad4e49c4b6ed69d40519e151cb9c104 Mon Sep 17 00:00:00 2001
From: oboulle <olivier.boulle@inria.fr>
Date: Thu, 13 Jun 2024 11:54:43 +0200
Subject: [PATCH] fix kp files

---
 partitioning/run_partitions.sh | 19 +++++++++++--------
 1 file changed, 11 insertions(+), 8 deletions(-)

diff --git a/partitioning/run_partitions.sh b/partitioning/run_partitions.sh
index 8217c3b..e1ceae8 100755
--- a/partitioning/run_partitions.sh
+++ b/partitioning/run_partitions.sh
@@ -15,6 +15,8 @@ mkdir $data_path
 # generate reads, shuffle
 python3 read_matrix.py $data_path $read_number
 
+
+:<<'END_COMMENT'
 # ______________ test metis ______________ :
 
 start_metis=$(date +%s.%N)
@@ -34,23 +36,24 @@ formated_metis_output=$dir_path"/metis_output.txt"
 python3 -c "from partitioning import metis_output_to_soluce; metis_output_to_soluce(\"$metis_output_file\", \"$formated_metis_output\")"
 rm $metis_output_file
 
+# eval metis solution
+metis_result=$dir_path/metis_result.txt
+python3 -c "from partitioning import eval_soluce; eval_soluce(\"$data_path/soluce.txt\",\"$formated_metis_output\", \"$metis_result\")"
+
+END_COMMENT
+
 # ______________ test kp ______________ :
 
 start_kp=$(date +%s.%N)
 # convert reads to minimizer matrix at csvbm format
 ./partitioning $data_path/shuffled_reads.fastq $dir_path/matrix.csvbm --csvbm
 
-kp_test_dir="matrix_tests/victor/kp_iter_bic/tests"
-. kp_run.sh -m $dir_path/matrix.csvbm -o $dir_path/kp_results
+. kp_run.sh -m $dir_path/matrix.csvbm -o $dir_path/kp_output
 
 
 end_kp=$(date +%s.%N)
 runtime=$(echo "$end_kp - $start_kp" | bc)
 
-# eval metis solution
-metis_result=$dir_path/metis_result.txt
-python3 -c "from partitioning import eval_soluce; eval_soluce(\"$data_path/soluce.txt\",\"$formated_metis_output\", \"$metis_result\")"
-
 # eval kp solution
-kp_result=$dir_path/kp_results/compacted_clusters.txt
-python3 -c "from partitioning import eval_soluce; eval_soluce(\"$data_path/soluce_10k.txt\",\"$kp_test_dir/soluce_kp_10k.txt\", \"$kp_result\")"
+kp_result=$dir_path/kp_output/compacted_clusters.txt
+python3 -c "from partitioning import eval_soluce; eval_soluce(\"$data_path/soluce.txt\",\"$kp_result\", \"$dir_path/kp_result.txt\")"
-- 
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