fix kp files

partitioning/run_partitions.sh

@@ -15,6 +15,8 @@ mkdir $data_path
 # generate reads, shuffle
 python3 read_matrix.py $data_path $read_number
 
+
+:<<'END_COMMENT'
 # ______________ test metis ______________ :
 
 start_metis=$(date +%s.%N)
@@ -34,23 +36,24 @@ formated_metis_output=$dir_path"/metis_output.txt"
 python3 -c "from partitioning import metis_output_to_soluce; metis_output_to_soluce(\"$metis_output_file\", \"$formated_metis_output\")"
 rm $metis_output_file
 
+# eval metis solution
+metis_result=$dir_path/metis_result.txt
+python3 -c "from partitioning import eval_soluce; eval_soluce(\"$data_path/soluce.txt\",\"$formated_metis_output\", \"$metis_result\")"
+
+END_COMMENT
+
 # ______________ test kp ______________ :
 
 start_kp=$(date +%s.%N)
 # convert reads to minimizer matrix at csvbm format
 ./partitioning $data_path/shuffled_reads.fastq $dir_path/matrix.csvbm --csvbm
 
-kp_test_dir="matrix_tests/victor/kp_iter_bic/tests"
-. kp_run.sh -m $dir_path/matrix.csvbm -o $dir_path/kp_results
+. kp_run.sh -m $dir_path/matrix.csvbm -o $dir_path/kp_output
 
 
 end_kp=$(date +%s.%N)
 runtime=$(echo "$end_kp - $start_kp" | bc)
 
-# eval metis solution
-metis_result=$dir_path/metis_result.txt
-python3 -c "from partitioning import eval_soluce; eval_soluce(\"$data_path/soluce.txt\",\"$formated_metis_output\", \"$metis_result\")"
-
 # eval kp solution
-kp_result=$dir_path/kp_results/compacted_clusters.txt
-python3 -c "from partitioning import eval_soluce; eval_soluce(\"$data_path/soluce_10k.txt\",\"$kp_test_dir/soluce_kp_10k.txt\", \"$kp_result\")"
+kp_result=$dir_path/kp_output/compacted_clusters.txt
+python3 -c "from partitioning import eval_soluce; eval_soluce(\"$data_path/soluce.txt\",\"$kp_result\", \"$dir_path/kp_result.txt\")"