Tags

Tags give the ability to mark specific points in history as being important

1.7.2

5b69f0fc · Merge branch 'release/1.7.2' · Oct 10, 2023

version 1.7.2
- review of conda env files (*.yaml) and build
- use bultin which command instead of external process to launch astec binaries
- removed obsolete python-3.7 builds, added python-3.10 and python-3.11

1.7.1

5e2a4686 · release 1.7.1 · Oct 02, 2023

version 1.7.1
- Write embryo as a graph
- Computation of symmetric cells
- Allows to extract any XZ-section(s) at the fusion stage.

1.7.0

aaed8fce · release 1.7.0 · Aug 25, 2023

- Fusion of one single time point: allows longer suffixes than recognized image extensions.
- Pre-processed images
  are no more stored into ``.../SEG/SEG_XXX/RECONSTRUCTION/`` but in their
  own directories ``.../REC-MEMBRANE/REC_XXX/`` and/or ``.../REC-SEED/REC_XXX/``
  and/or ``.../REC-MORPHOSNAKE/REC_XXX/``. They can be transformed by the
  motion compensation stage.
- User-provided outer contour images (to be stored in ``.../CONTOUR_/CONTOUR_XXX/``)
  can be used in image pre-processing.
- Properties computation computes cell lineage
  when it is not available.

1.6.2

eb67ca95 · release 1.6.2 · Dec 01, 2022
```
documentation update
```
1.6.1

3755cbce · fusion: morphological opening of the MIP image to crop the acquisition data · Oct 12, 2022
```
fusion: morphological opening of the MIP image to crop the acquisition data
```

1.6.0

9a9618ce · release 1.6.0 · Aug 10, 2022

- write/update documentation for astec_atlas_init_naming and astec_atlas_naming
- add assessment measure for initial naming

1.5.3

cc39af89 · release 1.5.3 · Jul 23, 2022

Allows fusion with only a subset of acquisition images

1.5.2

4aacab60 · release 1.5.2 · Jul 20, 2022

add utility to name one time point of an unnamed embryo from
a set of named atlases (astec_atlas_init_naming)

1.5.1

4641eede · release 1.5.1 · Jun 23, 2022

- add missing package in pkg/recipe/meta.yaml

1.5.0

cd55c826 · release 1.5.0 · Jun 02, 2022

allows .h5.gz images as camera acquisition images

1.4.0

528ed054 · release 1.4.0 · May 30, 2022

get the package version number from conda, and write it in the history log

1.3.0

a545ec61 · release 1.3.0 · May 25, 2022

allow cropping along the Z direction for fusion

1.2.0

e13b7e13 · release 1.2.0 · May 20, 2022
```
Release 1.2.0
```
1.1.4

2592f5d1 · Dedicated XML tags for morphonet information · Dec 09, 2021
```
Dedicated I/O for morphonet information
```

1.1.3

205682f0 · documentation · Nov 26, 2021

Update documentation. Update figure generation

1.1.2

f4542667 · update documentation · Nov 18, 2021

Add documentation for cell naming and atlas analysis

1.1.1

e223f00d · utils/properties.py: enrich comparison of property files · Nov 15, 2021
```
Evolution of cell naming procedures and atlas analysing
```
1.1.0

e764b34a · Add coherency in cell and division distances · Nov 10, 2021
```
Introduce automated cell naming for ciona
```
1.0.0

221ab15a · Python 3.7 version, same behavior as python 2.7 version · Jun 14, 2021
```
Switch to python 3.7
```

0.1.1

4be395a9 · ASTEC/ASTEC.py & parameters.py commentaries edition · Apr 23, 2018

CLI for steps 1-fuse to 5-postcorrection.
These steps are now executables and a help message is available using option --help.
ASTEC/CommunFunctions/cpp now links to the bin repository of morpheme_privat vt library.
This version also contains new framework modes such as GACE/GLACE reconstruction methods, fusion local 8-bits conversion and fusion/reconstruction hybridation strategy.

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