diff --git a/README.md b/README.md index 1b643a7c2293396852d47df31a6b61f404956ef4..0a81c8cf3ad9273ba52b4350e6adebf87e6ee761 100644 --- a/README.md +++ b/README.md @@ -1,2 +1,6 @@ # Astec Tutorial +This repository contains tutorial data for astec suite (see +[gitlab.inria.fr/astec/astec](https://gitlab.inria.fr/astec/astecl). + +Tutorial documentation can be found at [astec.gitlabpages.inria.fr/astec-tutorial/](https://astec.gitlabpages.inria.fr/astec-tutorial/). diff --git a/doc/source/astec_tutorial.rst b/doc/source/astec_tutorial.rst index 7ce04238a773ee5ad98e34e3d79d014a554116dc..7dade3f94aa49f75c1153b8286339bd7113cafe3 100644 --- a/doc/source/astec_tutorial.rst +++ b/doc/source/astec_tutorial.rst @@ -113,7 +113,7 @@ done with |fusion| * The variable ``EN`` is the prefix after which the result fusion images will be named. * The variables ``begin`` and ``end`` set respectively the - first and the last index of the input time points to be processed. + first and the last index of the input time points to be processed. * The variable ``DIR_RAWDATA`` is the directory containing the raw data. * The variables ``DIR_LEFTCAM_STACKZERO``, diff --git a/doc/source/conf.py b/doc/source/conf.py index 4d45cbe0f59278c2f6245140ba79d1b38953f0e0..2c842dfb198c79e73ab19a4e1b665d1baede2e49 100644 --- a/doc/source/conf.py +++ b/doc/source/conf.py @@ -68,7 +68,7 @@ rst_prolog = """ # The theme to use for HTML and HTML Help pages. See the documentation for # a list of builtin themes. # -html_theme = 'alabaster' +html_theme = 'sphinxdoc' # Add any paths that contain custom static files (such as style sheets) here, # relative to this directory. They are copied after the builtin static files, diff --git a/doc/source/index.rst b/doc/source/index.rst index 8afc69792a8119d1cb2055ffc38de93855870169..0bd13fa6e569028c286e5b70d3a737dbc441cdb2 100644 --- a/doc/source/index.rst +++ b/doc/source/index.rst @@ -1,6 +1,6 @@ -============== -Astec tutorial -============== +============================ +Welcome to astec's tutorial! +============================ ASTEC, for **Adaptive Segmentation and Tracking of Embryonic Cells**, was first developed during L. Guignard PhD thesis :cite:p:`guignard:tel-01278725`. @@ -14,5 +14,6 @@ Its development has been pursued, and it was used to process 3D+t movies acquire installation.rst astec_tutorial.rst + publications.rst diff --git a/doc/source/publications.rst b/doc/source/publications.rst new file mode 100644 index 0000000000000000000000000000000000000000..35a4a60aa0eedd971ff23aeb976acca053f99f21 --- /dev/null +++ b/doc/source/publications.rst @@ -0,0 +1,6 @@ +Publications & bibliography +=========================== + +.. bibliography:: + :all: +