Tags

time alignment error correction

update ascidian fates; use name_choice_score as property to assess naming propagation

Fix the computation of time post fertilization (tpf) and time interval (dt).
Add documentation.

Add propagation of vegetal/animal, anterior/posterior, and left/right
morphonet properties

correction of left/right property generation

correction of animal/vegetal property generation

update configuration files

- enrich morphonet outputs
- enrich property file with embryo related properties

- add short names generation
- update fates
- enrich morphonet outputs: groups anterior/posterior, animal/vegetal, left/right

- documentation
- astec_embryo was not updated properly wrt astec package

- update tissue fates
- enrich morphonet file writing: enables more properties to be written out

add __init__.py  in  src/ascidian/components

- division variation assessment
- morphonet name map
- embryo naming with graph matching
- optimization of winged contact cell signature
- optimization of symmetry axis computation with winged contacts

* major refactoring
* introduce the naming of a timepoint with linear assignment from cell similarity
* correct wrong behavior in name initialization when the requested cell count is not found
* correct bug on cell fate computation
* enrich diagnosis on cell names

- documentation updating
- refactoring symmetry related code; vector distribution dedicated code
- pursued code splitting into astec/ascidian repositories
- documentation splitting into astec/ascidian

version 0.2.0
- refactor setup.py (adding setup.cfg)
- test infrastructure

version 0.1.0
- renamed ascidians -> ascidian

First release