Commit 07270a73 authored by BERJON Matthieu's avatar BERJON Matthieu

Update of the documentation

I wrote a minimal documentation to get the django front-end running.
It's probably not enough but should do the trick for now. To get an html
(or other format output), it requires sphinx to compile it. The
necessary packages required for the development will be given in the
Signed-off-by: BERJON Matthieu's avatarMatthieu Berjon <>
parent 6efb5c88
Allgo is currently developped by the SED group. The full list of all contributors
can is available from git with::
git shortlog -sne
Allgo Changelog
Version 0.1.0
No license properly defined yet
Django front-end for the Allgo (A||go) platform.
* License: None
* Documentation: please refer to the README file
# Minimal makefile for Sphinx documentation
# You can set these variables from the command line.
SPHINXBUILD = sphinx-build
BUILDDIR = _build
# Put it first so that "make" without argument is like "make help".
.PHONY: help Makefile
# Catch-all target: route all unknown targets to Sphinx using the new
# "make mode" option. $(O) is meant as a shortcut for $(SPHINXOPTS).
%: Makefile
\ No newline at end of file
.. include:: ../CHANGELOG.rst
#!/usr/bin/env python3
# -*- coding: utf-8 -*-
# Allgo documentation build configuration file, created by
# sphinx-quickstart on Thu Mar 22 09:43:30 2018.
# This file is execfile()d with the current directory set to its
# containing dir.
# Note that not all possible configuration values are present in this
# autogenerated file.
# All configuration values have a default; values that are commented out
# serve to show the default.
# If extensions (or modules to document with autodoc) are in another directory,
# add these directories to sys.path here. If the directory is relative to the
# documentation root, use os.path.abspath to make it absolute, like shown here.
import os
import sys
sys.path.insert(0, os.path.abspath('..'))
import allgo
# -- General configuration ------------------------------------------------
# If your documentation needs a minimal Sphinx version, state it here.
# needs_sphinx = '1.0'
# Add any Sphinx extension module names here, as strings. They can be
# extensions coming with Sphinx (named 'sphinx.ext.*') or your custom
# ones.
extensions = ['sphinx.ext.autodoc', 'sphinx.ext.viewcode',
# Add any paths that contain templates here, relative to this directory.
templates_path = ['_templates']
# The suffix(es) of source filenames.
# You can specify multiple suffix as a list of string:
# source_suffix = ['.rst', '.md']
source_suffix = '.rst'
# The master toctree document.
master_doc = 'index'
# General information about the project.
project = 'Allgo'
copyright = '2018, INRIA/IRISA/SED'
author = 'Matthieu Berjon'
# The version info for the project you're documenting, acts as replacement for
# |version| and |release|, also used in various other places throughout the
# built documents.
# The short X.Y version.
version = allgo.__version__
# The full version, including alpha/beta/rc tags.
release = allgo.__version__
# The language for content autogenerated by Sphinx. Refer to documentation
# for a list of supported languages.
# This is also used if you do content translation via gettext catalogs.
# Usually you set "language" from the command line for these cases.
language = None
# List of patterns, relative to source directory, that match files and
# directories to ignore when looking for source files.
# This patterns also effect to html_static_path and html_extra_path
exclude_patterns = ['_build', 'Thumbs.db', '.DS_Store']
# The name of the Pygments (syntax highlighting) style to use.
pygments_style = 'sphinx'
# If true, `todo` and `todoList` produce output, else they produce nothing.
todo_include_todos = True
# -- Options for HTML output ----------------------------------------------
# The theme to use for HTML and HTML Help pages. See the documentation for
# a list of builtin themes.
html_theme = 'alabaster'
# Theme options are theme-specific and customize the look and feel of a theme
# further. For a list of options available for each theme, see the
# documentation.
# html_theme_options = {}
# Add any paths that contain custom static files (such as style sheets) here,
# relative to this directory. They are copied after the builtin static files,
# so a file named "default.css" will overwrite the builtin "default.css".
html_static_path = ['_static']
# Custom sidebar templates, must be a dictionary that maps document names
# to template names.
# This is required for the alabaster theme
# refs:
# html_sidebars = {
# '**': [
# 'relations.html', # needs 'show_related': True theme option to display
# 'searchbox.html',
# ]
# }
# -- Options for HTMLHelp output ------------------------------------------
# Output file base name for HTML help builder.
htmlhelp_basename = 'Allgodoc'
# -- Options for LaTeX output ---------------------------------------------
latex_elements = {
# The paper size ('letterpaper' or 'a4paper').
# 'papersize': 'letterpaper',
# The font size ('10pt', '11pt' or '12pt').
# 'pointsize': '10pt',
# Additional stuff for the LaTeX preamble.
# 'preamble': '',
# Latex figure (float) alignment
# 'figure_align': 'htbp',
# Grouping the document tree into LaTeX files. List of tuples
# (source start file, target name, title,
# author, documentclass [howto, manual, or own class]).
latex_documents = [
(master_doc, 'Allgo.tex', 'Allgo Documentation',
'Matthieu Berjon', 'manual'),
# -- Options for manual page output ---------------------------------------
# One entry per manual page. List of tuples
# (source start file, name, description, authors, manual section).
man_pages = [
(master_doc, 'allgo', 'Allgo Documentation',
[author], 1)
# -- Options for Texinfo output -------------------------------------------
# Grouping the document tree into Texinfo files. List of tuples
# (source start file, target name, title, author,
# dir menu entry, description, category)
texinfo_documents = [
(master_doc, 'Allgo', 'Allgo Documentation',
author, 'Allgo', 'One line description of project.',
Welcome to Allgo
`Allgo`_ is a platform for building deploying apps that analyze massive data in
Linux containers, it has been specifically designed for use in scientific
applications. This documentation is related to its front-end. Please see the
:ref:`installation` to get started.
.. toctree::
:maxdepth: 2
:caption: Contents:
Additional Notes
Design notes, legal information and changelog are here for the interested.
.. toctree::
:maxdepth: 2
.. _Allgo:
.. _installation:
Python Version
We recommend using the latest version of Python 3. Allgo supports Python 3.4
and newer.
- mysql v15.1 or newer
.. todo::
Set up of the Mysql database. Ensure that there is an existing user called
allgo with the right privileges on the database allgopy
.. warning::
because we depend at the moment on a legacy database we have a specific
setup for Django. We have chose to recreate the database into Django and by
integrating the database constraints (that are managed by Ruby on Rails and
not the SGDB).
.. todo::
Integration into Docker.
.. code-block:: bash
# Dump the tables from Allgo rails and import them into Allgo Django
./tools/ --init
# Run the Django webserver
python runserver
From that point, you can add the any required fields and process to the
migrations as usual.
.. todo::
Integrate the initialization into the Django app (through the
:file:`` file)
.. _authors:
.. include:: ../AUTHORS
Allgo license
.. include:: ../LICENSE
pushd %~dp0
REM Command file for Sphinx documentation
if "%SPHINXBUILD%" == "" (
set SPHINXBUILD=sphinx-build
set BUILDDIR=_build
if "%1" == "" goto help
if errorlevel 9009 (
echo.The 'sphinx-build' command was not found. Make sure you have Sphinx
echo.installed, then set the SPHINXBUILD environment variable to point the full path of the 'sphinx-build' executable. Alternatively you
echo.may add the Sphinx directory to PATH.
echo.If you don't have Sphinx installed, grab it from
exit /b 1
goto end
.. include:: ../README.rst
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