From 6b86d8e4dea028d297b4f58da2bcb51f3dd741c9 Mon Sep 17 00:00:00 2001 From: David Parsons <david.parsons@inria.fr> Date: Fri, 26 Apr 2019 17:17:58 +0200 Subject: [PATCH] update commands for pll examples --- examples/libpll_examples/fake_example/command.txt | 4 +--- examples/libpll_examples/real_example/command.txt | 2 +- 2 files changed, 2 insertions(+), 4 deletions(-) diff --git a/examples/libpll_examples/fake_example/command.txt b/examples/libpll_examples/fake_example/command.txt index 8ff17d34..a579a44b 100644 --- a/examples/libpll_examples/fake_example/command.txt +++ b/examples/libpll_examples/fake_example/command.txt @@ -1,3 +1 @@ -Run the following from the root path of Treerecs: -build/bin/Treerecs -g examples/libpll_examples/fake_example/gene_tree.txt -s examples/libpll_examples/fake_example/species_tree.txt -t 0.5 -a examples/libpll_examples/fake_example/alignments.txt --threshold all --ale-evaluation - +treerecs -g gene_tree.txt -s species_tree.txt -t 0.5 -a alignments.txt --threshold all--ale-evaluation diff --git a/examples/libpll_examples/real_example/command.txt b/examples/libpll_examples/real_example/command.txt index 2a7cbdb0..f6ec7342 100644 --- a/examples/libpll_examples/real_example/command.txt +++ b/examples/libpll_examples/real_example/command.txt @@ -1 +1 @@ -bin/Treerecs -g examples/libpll_examples/real_example/gene_tree_HBG011000.newick -s examples/libpll_examples/real_example/speciesTree.newick -a examples/libpll_examples/real_example/alignment.txt -t 0.5 --ale-evaluation -T 7 -S examples/libpll_examples/real_example/HBG011000.map +treerecs -g gene_tree_HBG011000.newick -s speciesTree.newick -a alignment.txt -t 0.5 --ale-evaluation -S HBG011000.map -- GitLab