#1049 Fix Fiber and bidomain model.

Data/Lua/demo_input_bidomain_2D_CRN.lua

@@ -156,6 +156,40 @@ Domain1 = {
     
 } -- Domain1
 
+Domain2 = {
+    
+    -- Index of the geometric mesh upon which the domain is defined (as defined in the present file). Might be
+    -- left empty if domain not limited to one mesh; at most one value is expected here.
+    -- Expected format: {VALUE1, VALUE2, ...}
+    mesh_index = { 1 },
+    
+    -- List of dimensions encompassed by the domain. Might be left empty if no restriction at all upon
+    -- dimensions.
+    -- Expected format: {VALUE1, VALUE2, ...}
+    -- Constraint: ops_in(v, {0, 1, 2, 3})
+    dimension_list = { },
+    
+    -- List of mesh labels encompassed by the domain. Might be left empty if no restriction at all upon mesh
+    -- labels. This parameter does not make sense if no mesh is defined for the domain.
+    -- Expected format: {VALUE1, VALUE2, ...}
+    mesh_label_list = { },
+    
+    -- List of geometric element types considered in the domain. Might be left empty if no restriction upon
+    -- these. No constraint is applied at Ops level, as some geometric element types could be added after
+    -- generation of current input parameter file. Current list is below; if an incorrect value is put there it
+    -- will be detected a bit later when the domain object is built.
+    -- The known types when this file was generated are:
+    -- . Point1
+    -- . Segment2, Segment3
+    -- . Triangle3, Triangle6
+    -- . Quadrangle4, Quadrangle8, Quadrangle9
+    -- . Tetrahedron4, Tetrahedron10
+    -- . Hexahedron8, Hexahedron20, Hexahedron27.
+    -- Expected format: {"VALUE1", "VALUE2", ...}
+    geometric_element_type_list = { }
+    
+} -- Domain2
+
 FiniteElementSpace1 = {
     
     -- Index of the god of dof into which the finite element space is defined.
@@ -436,9 +470,9 @@ Fiber_vector_1 = {
     -- Expected format: "VALUE"
     ensight_file = "${HOME}/Codes/HappyHeart/Data/Fiber/square_tria_4kv_fibers_at_zero.vct",
     
-    -- Index of the geometric mesh region upon which parameter is defined.
+    -- Index of the domain upon which parameter is defined.
     -- Expected format: VALUE
-    mesh_index = 1,
+    domain_index = 2,
     
     -- Index of the finite element space upon which parameter is defined.
     -- Expected format: VALUE

Data/Lua/demo_input_bidomain_2D_MS.lua

@@ -156,6 +156,42 @@ Domain1 = {
 
 } -- Domain1
 
+
+Domain2 = {
+    
+    -- Index of the geometric mesh upon which the domain is defined (as defined in the present file). Might be
+    -- left empty if domain not limited to one mesh; at most one value is expected here.
+    -- Expected format: {VALUE1, VALUE2, ...}
+    mesh_index = { 1 },
+    
+    -- List of dimensions encompassed by the domain. Might be left empty if no restriction at all upon
+    -- dimensions.
+    -- Expected format: {VALUE1, VALUE2, ...}
+    -- Constraint: ops_in(v, {0, 1, 2, 3})
+    dimension_list = { },
+    
+    -- List of mesh labels encompassed by the domain. Might be left empty if no restriction at all upon mesh
+    -- labels. This parameter does not make sense if no mesh is defined for the domain.
+    -- Expected format: {VALUE1, VALUE2, ...}
+    mesh_label_list = { },
+    
+    -- List of geometric element types considered in the domain. Might be left empty if no restriction upon
+    -- these. No constraint is applied at Ops level, as some geometric element types could be added after
+    -- generation of current input parameter file. Current list is below; if an incorrect value is put there it
+    -- will be detected a bit later when the domain object is built.
+    -- The known types when this file was generated are:
+    -- . Point1
+    -- . Segment2, Segment3
+    -- . Triangle3, Triangle6
+    -- . Quadrangle4, Quadrangle8, Quadrangle9
+    -- . Tetrahedron4, Tetrahedron10
+    -- . Hexahedron8, Hexahedron20, Hexahedron27.
+    -- Expected format: {"VALUE1", "VALUE2", ...}
+    geometric_element_type_list = { }
+    
+} -- Domain2
+
+
 FiniteElementSpace1 = {
 
 	-- Index of the god of dof into which the finite element space is defined.
@@ -434,7 +470,7 @@ Fiber_vector_1 = {
     -- Expected format: "VALUE"
     ensight_file = "${HOME}/Codes/HappyHeart/Data/Fiber/square_tria_4kv_fibers_pi_4.vct",
     
-    -- Index of the geometric mesh region upon which parameter is defined.
+    -- Index of the domain upon which parameter is defined.
     -- Expected format: VALUE
     mesh_index = 1,
     

Data/Lua/demo_input_bidomain_ventricles.lua

@@ -730,7 +730,7 @@ Fiber_vector_1 = {
     -- Expected format: "VALUE"
     ensight_file = "${HOME}/Codes/HappyHeart/Data/Fiber/Zygot_Vent_TeleSystol_6Tet_SurfElecSimu_VolVRVL_cmFibers_refbeforeInterp.00000.vct",
     
-    -- Index of the geometric mesh region upon which parameter is defined.
+    -- Index of the domain upon which parameter is defined.
     -- Expected format: VALUE
     mesh_index = 1,
     

Data/Lua/demo_input_cardiac_mechanics_prestress.lua

@@ -759,7 +759,7 @@ Fiber_vector_1 = {
     -- Expected format: "VALUE"
     ensight_file = "${HOME}/Codes/HappyHeart/Data/Fiber/ventriVol300Fib.vct",
     
-    -- Index of the geometric mesh region upon which parameter is defined.
+    -- Index of the domain upon which parameter is defined.
     -- Expected format: VALUE
     mesh_index = 1,
     

Data/Lua/demo_input_surfacic_bidomain_CRN.lua

@@ -707,7 +707,7 @@ Fiber_vector_1 = {
     -- Expected format: "VALUE"
     ensight_file = "${HOME}/Codes/HappyHeart/Data/Fiber/Zygot_AtriaDbl_TeleSystol_8TetInVent_SurfSimuElec_fibers.00000.vct",
     
-    -- Index of the geometric mesh region upon which parameter is defined.
+    -- Index of the domain upon which parameter is defined.
     -- Expected format: VALUE
     mesh_index = 1,
     
@@ -728,7 +728,7 @@ Fiber_scalar_2 = {
 	-- Expected format: "VALUE"
     ensight_file = "${HOME}/Codes/HappyHeart/Data/Fiber/Zygot_AtriaDbl_TeleSystol_8TetInVent_SurfSimuElec_angles.00000.scl",
 
-	-- Index of the geometric mesh region upon which parameter is defined.
+	-- Index of the domain upon which parameter is defined.
 	-- Expected format: VALUE
 	mesh_index = 1,
 

Data/Lua/demo_input_surfacic_bidomain_MS.lua

@@ -707,7 +707,7 @@ Fiber_vector_1 = {
     -- Expected format: "VALUE"
     ensight_file = "${HOME}/Codes/HappyHeart/Data/Fiber/Zygot_AtriaDbl_TeleSystol_8TetInVent_SurfSimuElec_fibers.00000.vct",
     
-    -- Index of the geometric mesh region upon which parameter is defined.
+    -- Index of the domain upon which parameter is defined.
     -- Expected format: VALUE
     mesh_index = 1,
     
@@ -728,7 +728,7 @@ Fiber_scalar_2 = {
     -- Expected format: "VALUE"
     ensight_file = "${HOME}/Codes/HappyHeart/Data/Fiber/Zygot_AtriaDbl_TeleSystol_8TetInVent_SurfSimuElec_angles.00000.scl",
     
-    -- Index of the geometric mesh region upon which parameter is defined.
+    -- Index of the domain upon which parameter is defined.
     -- Expected format: VALUE
     mesh_index = 1,
     

Data/Lua/demo_input_test_at_dof_parameter.lua

@@ -170,7 +170,7 @@ Fiber_vector_1 = {
     ensight_file = '${HOME}/Codes/HappyHeart/Data/Fiber/fibers.vct',
     --ensight_file = "/Volumes/Data/sebastien/Fiber/Zygot_AtriaDbl_TeleSystol_8TetInVent_SurfSimuElec_fibers.00000.vct",
 
-    -- Index of the geometric mesh region upon which parameter is defined.
+    -- Index of the domain upon which parameter is defined.
     -- Expected format: VALUE
     mesh_index = 1,
     
@@ -192,7 +192,7 @@ Fiber_scalar_2 = {
     ensight_file = '${HOME}/Codes/HappyHeart/Data/Fiber/distance.scl',
     --ensight_file = "/Volumes/Data/sebastien/Fiber/Zygot_AtriaDbl_TeleSystol_8TetInVent_SurfSimuElec_distance.00000.scl",
     
-    -- Index of the geometric mesh region upon which parameter is defined.
+    -- Index of the domain upon which parameter is defined.
     -- Expected format: VALUE
     mesh_index = 1,
     

Sources/Core/InputParameter/Parameter/Fiber/Fiber.hpp

@@ -82,12 +82,12 @@ namespace HappyHeart
   
             
             /*!
-             * \brief Index of the geometric mesh region onto which fiber is defined. It is expected this parameter
+             * \brief Index of the \a Domain onto which fiber is defined. It is expected this parameter
              * is compatible with the fiber file.
              */
-            struct GeometricMeshRegionIndex
-            : public  Utilities::InputParameterListNS::Crtp::InputParameter<GeometricMeshRegionIndex, self, FiberNS::GeometricMeshRegionIndex::storage_type>,
-            public FiberNS::GeometricMeshRegionIndex
+            struct DomainIndex
+            : public  Utilities::InputParameterListNS::Crtp::InputParameter<DomainIndex, self, FiberNS::DomainIndex::storage_type>,
+            public FiberNS::DomainIndex
             { };
 
             
@@ -117,7 +117,7 @@ namespace HappyHeart
             <
                 EnsightFile,
 //                Nature,
-                GeometricMeshRegionIndex,
+                DomainIndex,
                 FEltSpaceIndex,
                 UnknownName
             >;

Sources/Core/InputParameter/Parameter/Fiber/Private/Fiber.cpp

@@ -53,26 +53,26 @@ namespace HappyHeart
             }
             
                 
-            const std::string& GeometricMeshRegionIndex::NameInFile()
+            const std::string& DomainIndex::NameInFile()
             {
-                static std::string ret("mesh_index");
+                static std::string ret("domain_index");
                 return ret;
             }
             
             
-            const std::string& GeometricMeshRegionIndex::Description()
+            const std::string& DomainIndex::Description()
             {
-                static std::string ret("Index of the geometric mesh region upon which parameter is defined." );
+                static std::string ret("Index of the domain upon which parameter is defined." );
                 return ret;
             }
             
-            const std::string& GeometricMeshRegionIndex::Constraint()
+            const std::string& DomainIndex::Constraint()
             {
                 return Utilities::EmptyString();
             }
             
             
-            const std::string& GeometricMeshRegionIndex::DefaultValue()
+            const std::string& DomainIndex::DefaultValue()
             {
                 return Utilities::EmptyString();
             }

Sources/Core/InputParameter/Parameter/Fiber/Private/Fiber.hpp

@@ -80,7 +80,7 @@ namespace HappyHeart
              * \brief Index of the geometric mesh region.
              *
              */
-            struct GeometricMeshRegionIndex
+            struct DomainIndex
             {
                 using storage_type = unsigned int;
                 

Sources/ModelInstances/Bidomain/BidomainVariationalFormulation.hxx

@@ -35,7 +35,6 @@ namespace HappyHeart
         { }
         
         
-        
         template <Advanced::ReactionLawNS::ReactionLawName ReactionLawNameT>
         void BidomainVariationalFormulation<ReactionLawNameT>::AllocateMatricesAndVectors()
         {
@@ -60,32 +59,30 @@ namespace HappyHeart
         template <Advanced::ReactionLawNS::ReactionLawName ReactionLawNameT>
         void BidomainVariationalFormulation<ReactionLawNameT>::SupplInit(const InputParameterList& input_parameter_data)
         {
-            const auto& god_of_dof = this->GetGodOfDof();
-            const auto& mesh = god_of_dof.GetGeometricMeshRegion();
+            decltype(auto) domain = DomainManager::GetInstance().GetDomain(EnumUnderlyingType(DomainIndex::full_mesh));
             
             using Diffusion = InputParameter::Diffusion;
             
-            
             intracellular_trans_diffusion_tensor_ =
                 InitScalarParameterFromInputData<Diffusion::Tensor<EnumUnderlyingType(TensorIndex::intracellular_trans_diffusion_tensor)>>("Intracellular Trans Diffusion tensor",
-                                                                                                                              mesh,
-                                                                                                                              input_parameter_data);
+                                                                                                                                           domain,
+                                                                                                                                           input_parameter_data);
             extracellular_trans_diffusion_tensor_ =
                 InitScalarParameterFromInputData<Diffusion::Tensor<EnumUnderlyingType(TensorIndex::extracellular_trans_diffusion_tensor)>>("Extracellular Trans Diffusion tensor",
-                                                                                                                              mesh,
-                                                                                                                              input_parameter_data);
+                                                                                                                                           domain,
+                                                                                                                                           input_parameter_data);
             intracellular_fiber_diffusion_tensor_ =
                 InitScalarParameterFromInputData<Diffusion::Tensor<EnumUnderlyingType(TensorIndex::intracellular_fiber_diffusion_tensor)>>("Intracellular Fiber Diffusion tensor",
-                                                                                                                              mesh,
-                                                                                                                              input_parameter_data);
+                                                                                                                                           domain,
+                                                                                                                                           input_parameter_data);
             extracellular_fiber_diffusion_tensor_ =
                 InitScalarParameterFromInputData<Diffusion::Tensor<EnumUnderlyingType(TensorIndex::extracellular_fiber_diffusion_tensor)>>("Extracellular Fiber Diffusion tensor",
-                                                                                                                              mesh,
-                                                                                                                              input_parameter_data);
+                                                                                                                                           domain,
+                                                                                                                                           input_parameter_data);
             transcellular_density_ =
                 InitScalarParameterFromInputData<Diffusion::Density>("Transcellular Density",
-                                                        mesh,
-                                                        input_parameter_data);
+                                                                     domain,
+                                                                     input_parameter_data);
             
             if (!GetTranscellularDiffusionDensity().IsConstant())
                 throw Exception("Current Bidomain  model is restricted to a constant diffusion density.",
@@ -131,7 +128,9 @@ namespace HappyHeart
         void BidomainVariationalFormulation<ReactionLawNameT>::DefineOperators(const InputParameterList& input_parameter_data)
         {
             const auto& god_of_dof = this->GetGodOfDof();
-            const auto& mesh = god_of_dof.GetGeometricMeshRegion();
+            
+            decltype(auto) domain = DomainManager::GetInstance().GetDomain(EnumUnderlyingType(DomainIndex::full_mesh));
+            
             const auto& felt_space_highest_dimension = god_of_dof.GetFEltSpace(EnumUnderlyingType(FEltSpaceIndex::highest_dimension));
             
             const auto& transcellular_potential = UnknownManager::GetInstance().GetUnknown(EnumUnderlyingType(UnknownIndex::transcellular_potential));
@@ -163,7 +162,7 @@ namespace HappyHeart
                                             extracellular_potential);
             
             reaction_law_ = std::make_unique<reaction_law_type>(input_parameter_data,
-                                                                mesh,
+                                                                domain,
                                                                 this->GetTimeManager(),
                                                                 felt_space_highest_dimension.GetQuadratureRulePerTopology());
                         
@@ -175,8 +174,8 @@ namespace HappyHeart
             using parameter_type_on_square = InputParameter::TransientSource<EnumUnderlyingType(ForceIndexList::transcellular_current_applied_on_square)>;
             transcellular_current_applied_on_square_parameter_ =
                 InitThreeDimensionalParameterFromInputData<parameter_type_on_square>("Current Applied On Square",
-                                                                        mesh,
-                                                                        input_parameter_data);
+                                                                                     domain,
+                                                                                     input_parameter_data);
             
             if (transcellular_current_applied_on_square_parameter_ != nullptr)
             {

Sources/ModelInstances/Bidomain/InputParameterList.hpp

@@ -50,7 +50,8 @@ namespace HappyHeart
 
         enum class DomainIndex
         {
-            highest_dimension = 1
+            highest_dimension = 1,
+            full_mesh = 2
         };
 
 
@@ -124,6 +125,7 @@ namespace HappyHeart
             InputParameter::Mesh<EnumUnderlyingType(MeshIndex::mesh)>,
             
             InputParameter::Domain<EnumUnderlyingType(DomainIndex::highest_dimension)>,
+            InputParameter::Domain<EnumUnderlyingType(DomainIndex::full_mesh)>,
             
             InputParameter::FEltSpace<EnumUnderlyingType(FEltSpaceIndex::highest_dimension)>,
             

Sources/ParameterInstances/Fiber/FiberList.hpp

@@ -143,7 +143,7 @@ namespace HappyHeart
          */
         explicit FiberList(unsigned int unique_id,
                            const std::string& fiber_file,
-                           const GeometricMeshRegion& geometric_mesh_region,
+                           const Domain& domain,
                            const FEltSpace& felt_space,
                            const TimeManager& time_manager,
                            const Unknown& unknown);

Sources/ParameterInstances/Fiber/FiberList.hxx

@@ -27,13 +27,13 @@ namespace HappyHeart
     template<ParameterNS::Type TypeT>
     FiberList<TypeT>::FiberList(const unsigned int unique_id,
                                 const std::string& fiber_file,
-                                const GeometricMeshRegion& geometric_mesh_region,
+                                const Domain& domain,
                                 const FEltSpace& felt_space,
                                 const TimeManager& time_manager,
                                 const Unknown& unknown)
     : unique_id_parent(unique_id),
     parent("Fiber manager",
-           geometric_mesh_region)
+           domain)
     {
         const auto god_of_dof_ptr = felt_space.GetGodOfDofFromWeakPtr();
         const auto& god_of_dof = *god_of_dof_ptr;
@@ -43,9 +43,11 @@ namespace HappyHeart
         global_vector_ = std::make_unique<GlobalVector>(numbering_subset);
         AllocateGlobalVector(god_of_dof, *global_vector_);
 
-        assert(god_of_dof.GetGeometricMeshRegion().GetUniqueId() == geometric_mesh_region.GetUniqueId());
+        assert(god_of_dof.GetGeometricMeshRegion().GetUniqueId() == domain.GetGeometricMeshRegion().GetUniqueId());
 
         typename Internal::FiberNS::Traits<TypeT>::value_list_per_coord_index_type value_list_per_coord_index;
+        
+        decltype(auto) geometric_mesh_region = god_of_dof.GetGeometricMeshRegion();
 
         Internal::FiberNS::ReadFiberFile<TypeT>(god_of_dof.MpiHappyHeart(),
                                                fiber_file,
@@ -64,7 +66,7 @@ namespace HappyHeart
                                                   global_vector);
 
         ParameterAtDof<TypeT, ParameterNS::TimeDependencyNS::None> param_at_dof("Temporary",
-                                                                                geometric_mesh_region,
+                                                                                domain,
                                                                                 felt_space,
                                                                                 unknown,
                                                                                 global_vector);
@@ -78,7 +80,7 @@ namespace HappyHeart
         >;
         
         underlying_parameter_ = converter_type::Perform("Fiber manager",
-                                                        geometric_mesh_region,
+                                                        domain,
                                                         felt_space.GetQuadratureRulePerTopology(),
                                                         time_manager,
                                                         param_at_dof);

Sources/ParameterInstances/Fiber/Internal/FiberListManager.hpp

@@ -95,7 +95,7 @@ namespace HappyHeart
                  */
                 void Create(const unsigned int unique_id,
                             const std::string& fiber_file,
-                            const GeometricMeshRegion& geometric_mesh_region,
+                            const Domain& domain,
                             const FEltSpace& felt_space,
                             const Unknown& unknown);
 

Sources/ParameterInstances/Fiber/Internal/FiberListManager.hxx

@@ -47,19 +47,22 @@ namespace HappyHeart
                 namespace ipl = Utilities::InputParameterListNS;
 
                 decltype(auto) ensight_file = ipl::ExtractPathParameter<typename FiberSectionT::EnsightFile>(section);
-                decltype(auto) mesh_index = ipl::ExtractParameter<typename FiberSectionT::GeometricMeshRegionIndex>(section);
+                decltype(auto) domain_index = ipl::ExtractParameter<typename FiberSectionT::DomainIndex>(section);
                 decltype(auto) felt_space_index = ipl::ExtractParameter<typename FiberSectionT::FEltSpaceIndex>(section);
                 decltype(auto) unknown_name = ipl::ExtractParameter<typename FiberSectionT::UnknownName>(section);
 
-                const auto& mesh = Internal::MeshNS::GeometricMeshRegionManager::GetInstance().GetMesh(mesh_index);
-                const auto& god_of_dof = GodOfDofManager::GetInstance().GetGodOfDof(mesh_index);
+                const auto& domain = DomainManager::GetInstance().GetDomain(domain_index);
+                
+                decltype(auto) mesh = domain.GetGeometricMeshRegion();
+                
+                const auto& god_of_dof = GodOfDofManager::GetInstance().GetGodOfDof(mesh.GetUniqueId());
 
                 const auto& felt_space = god_of_dof.GetFEltSpace(felt_space_index);
                 const auto& unknown = UnknownManager::GetInstance().GetUnknown(unknown_name);
 
                 Create(section.GetUniqueId(),
                        ensight_file,
-                       mesh,
+                       domain,
                        felt_space,
                        unknown);
             }
@@ -68,7 +71,7 @@ namespace HappyHeart
             template<ParameterNS::Type TypeT>
             void FiberListManager<TypeT>::Create(const unsigned int unique_id,
                                                  const std::string& fiber_file,
-                                                 const GeometricMeshRegion& geometric_mesh_region,
+                                                 const Domain& domain,
                                                  const FEltSpace& felt_space,
                                                  const Unknown& unknown)
             {
@@ -76,7 +79,7 @@ namespace HappyHeart
                 // with both clang and gcc.
                 fiber_list_type* buf = new fiber_list_type(unique_id,
                                                            fiber_file,
-                                                           geometric_mesh_region,
+                                                           domain,
                                                            felt_space,
                                                            GetTimeManager(),
                                                            unknown);

Sources/ParameterInstances/FromParameterAtDof/FromParameterAtDof.hpp

@@ -64,8 +64,7 @@ namespace HappyHeart
              * tick is used here so it might be a pointer, a reference or a plain chain of characters.
              *
              * \param[in] name Name given to the parameter, just for output logs.
-             * \param[in] mesh Mesh upon which both \a Parameter are defined. It is for conveniency: infos is already
-             * available in \a param_at_dof but not that easily.
+             * \param[in] domain Domain upon which both \a Parameter are defined.
              * \param[in] quadrature_rule_per_topology \a QuadratureRule to use for each topology. Make sure you cover 
              * all the cases met in the \a FEltSpace underlying \a param_at_dof.
              * \copydetails doxygen_hide_time_manager_arg
@@ -76,7 +75,7 @@ namespace HappyHeart
             template<class StringT>
             static typename ParameterAtQuadraturePoint<TypeT, TimeDependencyT>::unique_ptr
             Perform(StringT&& name,
-                    const GeometricMeshRegion& mesh,
+                    const Domain& domain,
                     const QuadratureRulePerTopology& quadrature_rule_per_topology,
                     const TimeManager& time_manager,
                     const ParameterAtDof<TypeT, TimeDependencyT, NfeltSpaceT>& param_at_dof);

Sources/ParameterInstances/FromParameterAtDof/FromParameterAtDof.hxx

@@ -30,16 +30,18 @@ namespace HappyHeart
         typename ParameterAtQuadraturePoint<TypeT, TimeDependencyT>::unique_ptr
         FromParameterAtDof<TypeT, TimeDependencyT, NfeltSpaceT>
         ::Perform(StringT&& name,
-                  const GeometricMeshRegion& mesh,
+                  const Domain& domain,
                   const QuadratureRulePerTopology& quadrature_rule_per_topology,
                   const TimeManager& time_manager,
                   const ParameterAtDof<TypeT, TimeDependencyT, NfeltSpaceT>& param_at_dof)
         {
             decltype(auto) felt_space_storage = param_at_dof.GetFEltSpaceStorage(); // current class is a friend of \a AtDof policy.
+            
+            decltype(auto) mesh = domain.GetGeometricMeshRegion();
             const auto mesh_dimension = mesh.GetDimension();
 
             auto ret = std::make_unique<ParameterAtQuadraturePoint<TypeT, TimeDependencyT>>(name,
-                                                                                            mesh,
+                                                                                            domain,
                                                                                             quadrature_rule_per_topology,
                                                                                             Traits<TypeT>::AllocateDefaultValue(mesh_dimension, mesh_dimension),
                                                                                             time_manager);

Sources/build_configuration.sample.linux.py

@@ -15,6 +15,17 @@ MODE='debug'
 # Choose either 'static' or 'shared'. 'static' doesn't work for Linux at the moment. 
 LIBRARY_TYPE='shared'
 
+# Whether specific macros should be activated or not.
+
+    # If true, add a (costly) method that gives an hint whether an UpdateGhost() call was relevant or not.
+HAPPY_HEART_CHECK_UPDATE_GHOSTS_CALL_RELEVANCE = False
+
+    # If true, TimeKeep gains the ability to track times between each call of PrintTimeElapsed(). If not, PrintTimeElapsed() is flatly ignored.
+HAPPY_HEART_EXTENDED_TIME_KEEP = False
+
+    # If true, there are additional checks that no nan and inf appears in the code. Even if False, solver always check for the validity of its solution (if a nan or an inf is present the SolveLinear() or SolveNonLinear() operation throws with a dedicated Petsc error). Advised in debug mode and up to you in release mode.
+HAPPY_HEART_CHECK_NAN_AND_INF = False
+
 # OpenMPI libary.
 OPEN_MPI_INCL_DIR='/opt/LibraryVersions/gcc/5.3/Openmpi/include'
 OPEN_MPI_LIB_DIR='/opt/LibraryVersions/gcc/5.3/Openmpi/lib'

Sources/build_configuration.sample.mac.py

@@ -21,7 +21,10 @@ LIBRARY_TYPE='static'
 HAPPY_HEART_CHECK_UPDATE_GHOSTS_CALL_RELEVANCE = False
 
     # If true, TimeKeep gains the ability to track times between each call of PrintTimeElapsed(). If not, PrintTimeElapsed() is flatly ignored.
-HAPPY_HEART_EXTENDED_TIME_KEEP = True
+HAPPY_HEART_EXTENDED_TIME_KEEP = False
+
+    # If true, there are additional checks that no nan and inf appears in the code. Even if False, solver always check for the validity of its solution (if a nan or an inf is present the SolveLinear() or SolveNonLinear() operation throws with a dedicated Petsc error). Advised in debug mode and up to you in release mode.
+HAPPY_HEART_CHECK_NAN_AND_INF = False
 
 # OpenMPI libary.
 OPEN_MPI_INCL_DIR='/Users/Shared/LibraryVersions/clang/Openmpi/include'