diff --git a/Documentation/example_files/case_control/association/100_caco.asso b/Documentation/example_files/case_control/association/100_caco.asso
deleted file mode 100644
index 83bd010883f8083cd1db710a06dd54638af54e5a..0000000000000000000000000000000000000000
--- a/Documentation/example_files/case_control/association/100_caco.asso
+++ /dev/null
@@ -1,62 +0,0 @@
-
- /----* H004 case/control:9/2
- |----* H013 case/control:10/4
- | Site: 12 Sens: 2-->1
- /----* 18+(15) case/control:57/38
- | | Site: 9 Sens: 2-->1
- | | /----* H008 case/control:5/11
- | | | Site: 12 Sens: 2-->1
- | | |----* H012 case/control:2/4
- | |----* 17+(16) case/control:10/17
- | | | Site: 1 Sens: 1-->2
- | | | Site: 2 Sens: 1-->2
- | | \----* H014 case/control:3/2
- | | Site: 11 Sens: 2-->1
- | \----* H007 case/control:28/15
- | Site: 11 Sens: 2-->1
- /----* 19 case/control:67/42
- | | Site: 10 Sens: 2-->1
- | \----* H005 case/control:10/4
- | Site: 11 Sens: 2-->1
- /----* 20 case/control:78/44
- | | Site: 8 Sens: 2-->1
- | | Site: 6 Sens: 2-->1
- | | Site: 7 Sens: 2-->1
- | \----* H011 case/control:11/2
- /----* 21 case/control:96/48
- | | Site: 1 Sens: 2-->1
- | | Site: 2 Sens: 2-->1
- | \----* H003 case/control:18/4
- |----* H002 case/control:3/6
- | Site: 6 Sens: 2-->1
- | Site: 7 Sens: 2-->1
- /----* 24+(22) case/control:105/76
- | | Site: 13 Sens: 1-->2
- | |----* H006 case/control:1/3
- | | Site: 5 Sens: 2-->1
- | | /----* H010 case/control:2/13
- | | | Site: 4 Sens: 2-->1
- | \----* 23 case/control:5/19
- | | Site: 3 Sens: 2-->1
- | \----* H009 case/control:3/6
- | Site: 12 Sens: 2-->1
------* H000+(25) case/control:105/76
-
- [0] ddl=0
- [1] ddl=3 chi2=22.09 p_value_chi2=0
- [2] ddl=5 chi2=25.46 p_value_chi2=0
- [3] ddl=6 chi2=28.01 p_value_chi2=0
- [4] ddl=7 chi2=28.67 p_value_chi2=0
- [5] ddl=10 chi2=37.87 p_value_chi2=0
- [6] ddl=12 chi2=39.21 p_value_chi2=0
-
- Number of permutation: 100
-
-p_val for each level:
-level 1 p-value (non corrected) 0
-level 2 p-value (non corrected) 0
-level 3 p-value (non corrected) 0
-level 4 p-value (non corrected) 0
-level 5 p-value (non corrected) 0
-level 6 p-value (non corrected) 0
-corrected minimal p_value in the tree: 0 at level TODO
diff --git a/Documentation/example_files/case_control/association/caco.paup b/Documentation/example_files/case_control/association/caco.paup
deleted file mode 100644
index 23125500521652fd5eb21c3576944d44ff9123db..0000000000000000000000000000000000000000
--- a/Documentation/example_files/case_control/association/caco.paup
+++ /dev/null
@@ -1,38 +0,0 @@
-#Nexus
-Begin data;
-dimension ntax=14 nchar=13;
-format symbols="0123456789" missing=?;
-matrix
-H004_c002_m009 1122211111222
-H006_c003_m001 2222122222222
-H005_c004_m010 1122211121122
-H008_c011_m005 2222211111212
-H011_c002_m011 1122211122222
-H002_c006_m003 2222211222222
-H010_c013_m002 2211222222222
-H009_c006_m003 2212222222212
-[H001_c124_m095 2222222222222]
-H003_c004_m018 1122222222222
-H014_c002_m003 2222211111122
-H013_c004_m010 1122211111212
-H007_c015_m028 1122211111122
-H012_c004_m002 2222211111222
-H000_ancetre 2222222222221
-;
-end;
-begin assumptions;
-ancstates *anc vector = 2222222222221;
-end;
-begin paup;
-set nowarnreset autoclose maxtrees = 1000 increase=no[ - Auto AutoInc = 100] monitor = no taxlabels = full
-root=lundberg warnroot=no opt=deltran [- acctran] ancstates=anc;
-hsearch;
-savetrees from=1 to=1000 file=test.tree root=yes format=altnexus;
-cleartrees nowarn=yes;
-gettrees rooted=yes file=test.tree;
-log file = test.res.log replace=yes [- no];
-describetrees all /plot=cladogram [- phylogram] brlens=yes rootmethod=lundberg apolist=yes;
-log stop;
-end;
-quit;
-[WARNING, this file is designed for bi-allelic data. If it is not the case, you may have to modify this input file, for example by specifying the ordered option in the typeset command in the assumption block]
diff --git a/Documentation/example_files/case_control/association/correspond.txt b/Documentation/example_files/case_control/association/correspond.txt
deleted file mode 100644
index 6159f1513962be6e8b49e8a2aa753c28d9c86abc..0000000000000000000000000000000000000000
--- a/Documentation/example_files/case_control/association/correspond.txt
+++ /dev/null
@@ -1,13 +0,0 @@
-H004 m009 c002
-H006 m001 c003
-H005 m010 c004
-H008 m005 c011
-H011 m011 c002
-H002 m003 c006
-H010 m002 c013
-H009 m003 c006
-H003 m018 c004
-H014 m003 c002
-H013 m010 c004
-H007 m028 c015
-H012 m002 c004
diff --git a/Documentation/example_files/case_control/association/test.res.log b/Documentation/example_files/case_control/association/test.res.log
deleted file mode 100644
index 8980790a2d61b9f753e10ffd679e6435b908758c..0000000000000000000000000000000000000000
--- a/Documentation/example_files/case_control/association/test.res.log
+++ /dev/null
@@ -1,8653 +0,0 @@
-
-P A U P *
-Portable version 4.0b10 for Unix
-Tue Jul 5 18:05:27 2005
-
- -----------------------------NOTICE-----------------------------
- This is a beta-test version. Please report any crashes,
- apparent calculation errors, or other anomalous results.
- There are no restrictions on publication of results obtained
- with this version, but you should check the WWW site
- frequently for bug announcements and/or updated versions.
- See the README file on the distribution media for details.
- ----------------------------------------------------------------
-
-Tree description:
-
- Optimality criterion = parsimony
- Character-status summary:
- Of 13 total characters:
- All characters are of type 'unord'
- All characters have equal weight
- 2 characters are parsimony-uninformative
- Number of parsimony-informative characters = 11
- Character-state optimization: Delayed transformation (DELTRAN)
- AncStates = "anc"
-
-Tree number 1:
-
-Branch lengths and linkages for tree #1
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 21 root 0 0 0
- 20 21 1 1 1
- 18 20 2 2 2
- 17 18 3 3 3
- 16 17 2 2 2
-H004 c002 m009 (1) 16 0 0 0
- 15 16 1 1 1
-H005 c004 m010 (3) 15 1 1 1
-H011 c002 m011 (5) 15 1 1 1
-H013 c004 m010 (11) 16 1 1 1
-H007 c015 m028 (12) 16 1 1 1
-H008 c011 m005 (4) 17 1 1 1
-H014 c002 m003 (10) 17 1 1 1
-H012 c004 m002 (13) 17 0 0 0
-H002 c006 m003 (6) 18 0 0 0
-H006 c003 m001 (2) 20 1 1 1
- 19 20 1 1 1
-H010 c013 m002 (7) 19 1 1 1
-H009 c006 m003 (8) 19 1 1 1
-H003 c004 m018 (9) 20 2 2 2
-H000 ancetre (14) 21 0 0 0
--------------------------------------------------------------------------
-Sum 21
-
-Tree length = 21
-Consistency index (CI) = 0.6190
-Homoplasy index (HI) = 0.3810
-CI excluding uninformative characters = 0.5789
-HI excluding uninformative characters = 0.4211
-Retention index (RI) = 0.8140
-Rescaled consistency index (RC) = 0.5039
-
- /------------------ H004 c002 m009
- |
- | /--------- H005 c004 m010
- +-------15
- /-------16 \--------- H011 c002 m011
- | |
- | +------------------ H013 c004 m010
- | |
- | \------------------ H007 c015 m028
- /-------17
- | +--------------------------- H008 c011 m005
- | |
- | +--------------------------- H014 c002 m003
- /-------18 |
- | | \--------------------------- H012 c004 m002
- | |
- | \------------------------------------ H002 c006 m003
- |
- +--------------------------------------------- H006 c003 m001
- /-------20
- | | /--------- H010 c013 m002
- | +----------------------------------19
- | | \--------- H009 c006 m003
---------21 |
- | \--------------------------------------------- H003 c004 m018
- |
- \------------------------------------------------------ H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_21 --> node_20 13 1 1.000 1 ==> 2
- node_20 --> node_18 6 1 1.000 2 ==> 1
- 7 1 1.000 2 ==> 1
- node_18 --> node_17 8 1 1.000 2 ==> 1
- 9 1 0.500 2 ==> 1
- 10 1 0.500 2 ==> 1
- node_17 --> node_16 1 1 0.500 2 ==> 1
- 2 1 0.500 2 ==> 1
- node_16 --> node_15 9 1 0.500 1 ==> 2
- node_15 --> H005 c004 m010 11 1 0.333 2 ==> 1
- node_15 --> H011 c002 m011 10 1 0.500 1 ==> 2
- node_16 --> H013 c004 m010 12 1 0.333 2 ==> 1
- node_16 --> H007 c015 m028 11 1 0.333 2 ==> 1
- node_17 --> H008 c011 m005 12 1 0.333 2 ==> 1
- node_17 --> H014 c002 m003 11 1 0.333 2 ==> 1
- node_20 --> H006 c003 m001 5 1 1.000 2 ==> 1
- node_20 --> node_19 3 1 1.000 2 ==> 1
- node_19 --> H010 c013 m002 4 1 1.000 2 ==> 1
- node_19 --> H009 c006 m003 12 1 0.333 2 ==> 1
- node_20 --> H003 c004 m018 1 1 0.500 2 ==> 1
- 2 1 0.500 2 ==> 1
-
-Tree number 2:
-
-Branch lengths and linkages for tree #2
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 23 root 0 0 0
- 22 23 1 1 1
- 20 22 0 0 2
- 19 20 2 2 2
- 18 19 3 1 3
- 17 18 1 1 1
- 16 17 1 1 1
-H004 c002 m009 (1) 16 0 0 0
- 15 16 2 2 2
-H008 c011 m005 (4) 15 1 1 1
-H014 c002 m003 (10) 15 1 1 1
-H012 c004 m002 (13) 15 0 0 0
-H013 c004 m010 (11) 16 1 1 1
-H007 c015 m028 (12) 16 1 1 1
-H005 c004 m010 (3) 17 1 1 1
-H011 c002 m011 (5) 18 0 0 0
-H002 c006 m003 (6) 19 0 0 2
-H003 c004 m018 (9) 20 2 0 2
-H006 c003 m001 (2) 22 1 1 1
- 21 22 1 1 1
-H010 c013 m002 (7) 21 1 1 1
-H009 c006 m003 (8) 21 1 1 1
-H000 ancetre (14) 23 0 0 0
--------------------------------------------------------------------------
-Sum 21
-
-Tree length = 21
-Consistency index (CI) = 0.6190
-Homoplasy index (HI) = 0.3810
-CI excluding uninformative characters = 0.5789
-HI excluding uninformative characters = 0.4211
-Retention index (RI) = 0.8140
-Rescaled consistency index (RC) = 0.5039
-
- /-------------- H004 c002 m009
- |
- | /------- H008 c011 m005
- | |
- +-----15------- H014 c002 m003
- /-----16 |
- | | \------- H012 c004 m002
- | |
- | +-------------- H013 c004 m010
- /-----17 |
- | | \-------------- H007 c015 m028
- | |
- /-----18 \--------------------- H005 c004 m010
- | |
- /-----19 \---------------------------- H011 c002 m011
- | |
- /-----20 \----------------------------------- H002 c006 m003
- | |
- | \------------------------------------------ H003 c004 m018
- |
- /-----22------------------------------------------------- H006 c003 m001
- | |
- | | /------- H010 c013 m002
-------23 \----------------------------------------21
- | \------- H009 c006 m003
- |
- \-------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_23 --> node_22 13 1 1.000 1 ==> 2
- node_20 --> node_19 6 1 1.000 2 ==> 1
- 7 1 1.000 2 ==> 1
- node_19 --> node_18 1 1 0.333 2 --> 1
- 2 1 0.333 2 --> 1
- 8 1 1.000 2 ==> 1
- node_18 --> node_17 10 1 1.000 2 ==> 1
- node_17 --> node_16 9 1 1.000 2 ==> 1
- node_16 --> node_15 1 1 0.333 1 ==> 2
- 2 1 0.333 1 ==> 2
- node_15 --> H008 c011 m005 12 1 0.333 2 ==> 1
- node_15 --> H014 c002 m003 11 1 0.333 2 ==> 1
- node_16 --> H013 c004 m010 12 1 0.333 2 ==> 1
- node_16 --> H007 c015 m028 11 1 0.333 2 ==> 1
- node_17 --> H005 c004 m010 11 1 0.333 2 ==> 1
- node_20 --> H003 c004 m018 1 1 0.333 2 --> 1
- 2 1 0.333 2 --> 1
- node_22 --> H006 c003 m001 5 1 1.000 2 ==> 1
- node_22 --> node_21 3 1 1.000 2 ==> 1
- node_21 --> H010 c013 m002 4 1 1.000 2 ==> 1
- node_21 --> H009 c006 m003 12 1 0.333 2 ==> 1
-
-Tree number 3:
-
-Branch lengths and linkages for tree #3
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 22 root 0 0 0
- 21 22 1 1 1
- 19 21 2 2 2
- 18 19 3 3 3
- 17 18 2 2 2
-H004 c002 m009 (1) 17 0 0 0
- 16 17 0 0 1
- 15 16 1 1 1
-H005 c004 m010 (3) 15 1 0 1
-H011 c002 m011 (5) 15 1 1 2
-H007 c015 m028 (12) 16 1 0 1
-H013 c004 m010 (11) 17 1 1 1
-H008 c011 m005 (4) 18 1 1 1
-H014 c002 m003 (10) 18 1 1 1
-H012 c004 m002 (13) 18 0 0 0
-H002 c006 m003 (6) 19 0 0 0
-H006 c003 m001 (2) 21 1 1 1
- 20 21 1 1 1
-H010 c013 m002 (7) 20 1 1 1
-H009 c006 m003 (8) 20 1 1 1
-H003 c004 m018 (9) 21 2 2 2
-H000 ancetre (14) 22 0 0 0
--------------------------------------------------------------------------
-Sum 21
-
-Tree length = 21
-Consistency index (CI) = 0.6190
-Homoplasy index (HI) = 0.3810
-CI excluding uninformative characters = 0.5789
-HI excluding uninformative characters = 0.4211
-Retention index (RI) = 0.8140
-Rescaled consistency index (RC) = 0.5039
-
- /------------------------ H004 c002 m009
- |
- | /-------- H005 c004 m010
- | /------15
- /------17 | \-------- H011 c002 m011
- | +------16
- | | \---------------- H007 c015 m028
- | |
- | \------------------------ H013 c004 m010
- /-----18
- | +-------------------------------- H008 c011 m005
- | |
- | +-------------------------------- H014 c002 m003
- /------19 |
- | | \-------------------------------- H012 c004 m002
- | |
- | \--------------------------------------- H002 c006 m003
- |
- +----------------------------------------------- H006 c003 m001
- /------21
- | | /-------- H010 c013 m002
- | +-------------------------------------20
- | | \-------- H009 c006 m003
--------22 |
- | \----------------------------------------------- H003 c004 m018
- |
- \------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_22 --> node_21 13 1 1.000 1 ==> 2
- node_21 --> node_19 6 1 1.000 2 ==> 1
- 7 1 1.000 2 ==> 1
- node_19 --> node_18 8 1 1.000 2 ==> 1
- 9 1 0.500 2 ==> 1
- 10 1 0.500 2 ==> 1
- node_18 --> node_17 1 1 0.500 2 ==> 1
- 2 1 0.500 2 ==> 1
- node_16 --> node_15 9 1 0.500 1 ==> 2
- node_15 --> H005 c004 m010 11 1 0.333 2 --> 1
- node_15 --> H011 c002 m011 10 1 0.500 1 ==> 2
- node_16 --> H007 c015 m028 11 1 0.333 2 --> 1
- node_17 --> H013 c004 m010 12 1 0.333 2 ==> 1
- node_18 --> H008 c011 m005 12 1 0.333 2 ==> 1
- node_18 --> H014 c002 m003 11 1 0.333 2 ==> 1
- node_21 --> H006 c003 m001 5 1 1.000 2 ==> 1
- node_21 --> node_20 3 1 1.000 2 ==> 1
- node_20 --> H010 c013 m002 4 1 1.000 2 ==> 1
- node_20 --> H009 c006 m003 12 1 0.333 2 ==> 1
- node_21 --> H003 c004 m018 1 1 0.500 2 ==> 1
- 2 1 0.500 2 ==> 1
-
-Tree number 4:
-
-Branch lengths and linkages for tree #4
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 23 root 0 0 0
- 22 23 1 1 1
- 20 22 2 2 2
- 19 20 3 3 3
- 18 19 0 0 1
- 17 18 2 2 2
- 15 17 0 0 1
-H004 c002 m009 (1) 15 0 0 0
-H013 c004 m010 (11) 15 1 1 1
- 16 17 1 1 1
-H005 c004 m010 (3) 16 1 0 1
-H011 c002 m011 (5) 16 1 1 2
-H007 c015 m028 (12) 17 1 0 1
-H014 c002 m003 (10) 18 1 0 1
-H008 c011 m005 (4) 19 1 1 1
-H012 c004 m002 (13) 19 0 0 0
-H002 c006 m003 (6) 20 0 0 0
-H006 c003 m001 (2) 22 1 1 1
- 21 22 1 1 1
-H010 c013 m002 (7) 21 1 1 1
-H009 c006 m003 (8) 21 1 1 1
-H003 c004 m018 (9) 22 2 2 2
-H000 ancetre (14) 23 0 0 0
--------------------------------------------------------------------------
-Sum 21
-
-Tree length = 21
-Consistency index (CI) = 0.6190
-Homoplasy index (HI) = 0.3810
-CI excluding uninformative characters = 0.5789
-HI excluding uninformative characters = 0.4211
-Retention index (RI) = 0.8140
-Rescaled consistency index (RC) = 0.5039
-
- /-------- H004 c002 m009
- /------15
- | \-------- H013 c004 m010
- |
- | /-------- H005 c004 m010
- /------17------16
- | | \-------- H011 c002 m011
- | |
- /------18 \---------------- H007 c015 m028
- | |
- | \------------------------ H014 c002 m003
- /-----19
- | +-------------------------------- H008 c011 m005
- | |
- /------20 \-------------------------------- H012 c004 m002
- | |
- | \--------------------------------------- H002 c006 m003
- |
- +----------------------------------------------- H006 c003 m001
- /------22
- | | /-------- H010 c013 m002
- | +-------------------------------------21
- | | \-------- H009 c006 m003
--------23 |
- | \----------------------------------------------- H003 c004 m018
- |
- \------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_23 --> node_22 13 1 1.000 1 ==> 2
- node_22 --> node_20 6 1 1.000 2 ==> 1
- 7 1 1.000 2 ==> 1
- node_20 --> node_19 8 1 1.000 2 ==> 1
- 9 1 0.500 2 ==> 1
- 10 1 0.500 2 ==> 1
- node_18 --> node_17 1 1 0.500 2 ==> 1
- 2 1 0.500 2 ==> 1
- node_15 --> H013 c004 m010 12 1 0.333 2 ==> 1
- node_17 --> node_16 9 1 0.500 1 ==> 2
- node_16 --> H005 c004 m010 11 1 0.333 2 --> 1
- node_16 --> H011 c002 m011 10 1 0.500 1 ==> 2
- node_17 --> H007 c015 m028 11 1 0.333 2 --> 1
- node_18 --> H014 c002 m003 11 1 0.333 2 --> 1
- node_19 --> H008 c011 m005 12 1 0.333 2 ==> 1
- node_22 --> H006 c003 m001 5 1 1.000 2 ==> 1
- node_22 --> node_21 3 1 1.000 2 ==> 1
- node_21 --> H010 c013 m002 4 1 1.000 2 ==> 1
- node_21 --> H009 c006 m003 12 1 0.333 2 ==> 1
- node_22 --> H003 c004 m018 1 1 0.500 2 ==> 1
- 2 1 0.500 2 ==> 1
-
-Tree number 5:
-
-Branch lengths and linkages for tree #5
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 24 root 0 0 0
- 23 24 1 1 1
- 21 23 2 2 2
- 20 21 3 3 3
- 19 20 0 0 1
- 18 19 2 2 2
- 15 18 0 0 1
-H004 c002 m009 (1) 15 0 0 0
-H013 c004 m010 (11) 15 1 1 1
- 17 18 0 0 1
- 16 17 1 1 1
-H005 c004 m010 (3) 16 1 0 1
-H011 c002 m011 (5) 16 1 1 2
-H007 c015 m028 (12) 17 1 0 1
-H014 c002 m003 (10) 19 1 0 1
-H008 c011 m005 (4) 20 1 1 1
-H012 c004 m002 (13) 20 0 0 0
-H002 c006 m003 (6) 21 0 0 0
-H006 c003 m001 (2) 23 1 1 1
- 22 23 1 1 1
-H010 c013 m002 (7) 22 1 1 1
-H009 c006 m003 (8) 22 1 1 1
-H003 c004 m018 (9) 23 2 2 2
-H000 ancetre (14) 24 0 0 0
--------------------------------------------------------------------------
-Sum 21
-
-Tree length = 21
-Consistency index (CI) = 0.6190
-Homoplasy index (HI) = 0.3810
-CI excluding uninformative characters = 0.5789
-HI excluding uninformative characters = 0.4211
-Retention index (RI) = 0.8140
-Rescaled consistency index (RC) = 0.5039
-
- /------- H004 c002 m009
- /------------15
- | \------- H013 c004 m010
- |
- /-----18 /------- H005 c004 m010
- | | /-----16
- | | | \------- H011 c002 m011
- /-----19 \-----17
- | | \-------------- H007 c015 m028
- | |
- | \---------------------------- H014 c002 m003
- /-----20
- | +----------------------------------- H008 c011 m005
- | |
- /-----21 \----------------------------------- H012 c004 m002
- | |
- | \------------------------------------------ H002 c006 m003
- |
- +------------------------------------------------- H006 c003 m001
- /-----23
- | | /------- H010 c013 m002
- | +----------------------------------------22
- | | \------- H009 c006 m003
-------24 |
- | \------------------------------------------------- H003 c004 m018
- |
- \-------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_24 --> node_23 13 1 1.000 1 ==> 2
- node_23 --> node_21 6 1 1.000 2 ==> 1
- 7 1 1.000 2 ==> 1
- node_21 --> node_20 8 1 1.000 2 ==> 1
- 9 1 0.500 2 ==> 1
- 10 1 0.500 2 ==> 1
- node_19 --> node_18 1 1 0.500 2 ==> 1
- 2 1 0.500 2 ==> 1
- node_15 --> H013 c004 m010 12 1 0.333 2 ==> 1
- node_17 --> node_16 9 1 0.500 1 ==> 2
- node_16 --> H005 c004 m010 11 1 0.333 2 --> 1
- node_16 --> H011 c002 m011 10 1 0.500 1 ==> 2
- node_17 --> H007 c015 m028 11 1 0.333 2 --> 1
- node_19 --> H014 c002 m003 11 1 0.333 2 --> 1
- node_20 --> H008 c011 m005 12 1 0.333 2 ==> 1
- node_23 --> H006 c003 m001 5 1 1.000 2 ==> 1
- node_23 --> node_22 3 1 1.000 2 ==> 1
- node_22 --> H010 c013 m002 4 1 1.000 2 ==> 1
- node_22 --> H009 c006 m003 12 1 0.333 2 ==> 1
- node_23 --> H003 c004 m018 1 1 0.500 2 ==> 1
- 2 1 0.500 2 ==> 1
-
-Tree number 6:
-
-Branch lengths and linkages for tree #6
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 23 root 0 0 0
- 22 23 1 1 1
- 20 22 2 2 2
- 19 20 2 2 3
- 17 19 2 2 2
- 15 17 1 0 1
-H004 c002 m009 (1) 15 0 0 0
-H013 c004 m010 (11) 15 1 1 1
-H007 c015 m028 (12) 15 1 1 1
- 16 17 0 0 1
-H005 c004 m010 (3) 16 1 1 1
-H011 c002 m011 (5) 16 1 1 1
- 18 19 1 0 1
-H008 c011 m005 (4) 18 1 1 1
-H014 c002 m003 (10) 18 1 1 1
-H012 c004 m002 (13) 18 0 0 0
-H002 c006 m003 (6) 20 0 0 0
-H006 c003 m001 (2) 22 1 1 1
- 21 22 1 1 1
-H010 c013 m002 (7) 21 1 1 1
-H009 c006 m003 (8) 21 1 1 1
-H003 c004 m018 (9) 22 2 2 2
-H000 ancetre (14) 23 0 0 0
--------------------------------------------------------------------------
-Sum 21
-
-Tree length = 21
-Consistency index (CI) = 0.6190
-Homoplasy index (HI) = 0.3810
-CI excluding uninformative characters = 0.5789
-HI excluding uninformative characters = 0.4211
-Retention index (RI) = 0.8140
-Rescaled consistency index (RC) = 0.5039
-
- /--------- H004 c002 m009
- |
- /-------15--------- H013 c004 m010
- | |
- | \--------- H007 c015 m028
- /-------17
- | | /--------- H005 c004 m010
- | \-------16
- | \--------- H011 c002 m011
- /-------19
- | | /--------- H008 c011 m005
- | | |
- | \----------------18--------- H014 c002 m003
- /-------20 |
- | | \--------- H012 c004 m002
- | |
- | \------------------------------------ H002 c006 m003
- |
- +--------------------------------------------- H006 c003 m001
- /-------22
- | | /--------- H010 c013 m002
- | +----------------------------------21
- | | \--------- H009 c006 m003
---------23 |
- | \--------------------------------------------- H003 c004 m018
- |
- \------------------------------------------------------ H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_23 --> node_22 13 1 1.000 1 ==> 2
- node_22 --> node_20 6 1 1.000 2 ==> 1
- 7 1 1.000 2 ==> 1
- node_20 --> node_19 8 1 1.000 2 ==> 1
- 10 1 0.500 2 ==> 1
- node_19 --> node_17 1 1 0.500 2 ==> 1
- 2 1 0.500 2 ==> 1
- node_17 --> node_15 9 1 0.500 2 --> 1
- node_15 --> H013 c004 m010 12 1 0.333 2 ==> 1
- node_15 --> H007 c015 m028 11 1 0.333 2 ==> 1
- node_16 --> H005 c004 m010 11 1 0.333 2 ==> 1
- node_16 --> H011 c002 m011 10 1 0.500 1 ==> 2
- node_19 --> node_18 9 1 0.500 2 --> 1
- node_18 --> H008 c011 m005 12 1 0.333 2 ==> 1
- node_18 --> H014 c002 m003 11 1 0.333 2 ==> 1
- node_22 --> H006 c003 m001 5 1 1.000 2 ==> 1
- node_22 --> node_21 3 1 1.000 2 ==> 1
- node_21 --> H010 c013 m002 4 1 1.000 2 ==> 1
- node_21 --> H009 c006 m003 12 1 0.333 2 ==> 1
- node_22 --> H003 c004 m018 1 1 0.500 2 ==> 1
- 2 1 0.500 2 ==> 1
-
-Tree number 7:
-
-Branch lengths and linkages for tree #7
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 22 root 0 0 0
- 21 22 1 1 1
- 19 21 2 2 2
- 18 19 2 2 2
- 16 18 2 2 2
- 15 16 1 1 1
-H004 c002 m009 (1) 15 0 0 0
-H013 c004 m010 (11) 15 1 1 1
-H007 c015 m028 (12) 15 1 1 1
-H005 c004 m010 (3) 16 1 1 1
-H011 c002 m011 (5) 16 1 1 1
- 17 18 1 1 1
-H008 c011 m005 (4) 17 1 1 1
-H014 c002 m003 (10) 17 1 1 1
-H012 c004 m002 (13) 17 0 0 0
-H002 c006 m003 (6) 19 0 0 0
-H006 c003 m001 (2) 21 1 1 1
- 20 21 1 1 1
-H010 c013 m002 (7) 20 1 1 1
-H009 c006 m003 (8) 20 1 1 1
-H003 c004 m018 (9) 21 2 2 2
-H000 ancetre (14) 22 0 0 0
--------------------------------------------------------------------------
-Sum 21
-
-Tree length = 21
-Consistency index (CI) = 0.6190
-Homoplasy index (HI) = 0.3810
-CI excluding uninformative characters = 0.5789
-HI excluding uninformative characters = 0.4211
-Retention index (RI) = 0.8140
-Rescaled consistency index (RC) = 0.5039
-
- /--------- H004 c002 m009
- |
- /-------15--------- H013 c004 m010
- | |
- | \--------- H007 c015 m028
- /-------16
- | +------------------ H005 c004 m010
- | |
- | \------------------ H011 c002 m011
- /-------18
- | | /--------- H008 c011 m005
- | | |
- | \----------------17--------- H014 c002 m003
- /-------19 |
- | | \--------- H012 c004 m002
- | |
- | \------------------------------------ H002 c006 m003
- |
- +--------------------------------------------- H006 c003 m001
- /-------21
- | | /--------- H010 c013 m002
- | +----------------------------------20
- | | \--------- H009 c006 m003
---------22 |
- | \--------------------------------------------- H003 c004 m018
- |
- \------------------------------------------------------ H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_22 --> node_21 13 1 1.000 1 ==> 2
- node_21 --> node_19 6 1 1.000 2 ==> 1
- 7 1 1.000 2 ==> 1
- node_19 --> node_18 8 1 1.000 2 ==> 1
- 10 1 0.500 2 ==> 1
- node_18 --> node_16 1 1 0.500 2 ==> 1
- 2 1 0.500 2 ==> 1
- node_16 --> node_15 9 1 0.500 2 ==> 1
- node_15 --> H013 c004 m010 12 1 0.333 2 ==> 1
- node_15 --> H007 c015 m028 11 1 0.333 2 ==> 1
- node_16 --> H005 c004 m010 11 1 0.333 2 ==> 1
- node_16 --> H011 c002 m011 10 1 0.500 1 ==> 2
- node_18 --> node_17 9 1 0.500 2 ==> 1
- node_17 --> H008 c011 m005 12 1 0.333 2 ==> 1
- node_17 --> H014 c002 m003 11 1 0.333 2 ==> 1
- node_21 --> H006 c003 m001 5 1 1.000 2 ==> 1
- node_21 --> node_20 3 1 1.000 2 ==> 1
- node_20 --> H010 c013 m002 4 1 1.000 2 ==> 1
- node_20 --> H009 c006 m003 12 1 0.333 2 ==> 1
- node_21 --> H003 c004 m018 1 1 0.500 2 ==> 1
- 2 1 0.500 2 ==> 1
-
-Tree number 8:
-
-Branch lengths and linkages for tree #8
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 24 root 0 0 0
- 23 24 1 1 1
- 21 23 2 2 2
- 20 21 1 1 2
- 18 20 2 2 2
- 17 18 1 0 2
- 16 17 1 1 1
- 15 16 0 0 1
-H004 c002 m009 (1) 15 0 0 0
-H013 c004 m010 (11) 15 1 1 1
-H007 c015 m028 (12) 16 1 0 1
-H005 c004 m010 (3) 17 1 0 1
-H011 c002 m011 (5) 18 0 0 1
- 19 20 2 1 2
-H008 c011 m005 (4) 19 1 1 1
-H014 c002 m003 (10) 19 1 1 1
-H012 c004 m002 (13) 19 0 0 0
-H002 c006 m003 (6) 21 0 0 0
-H006 c003 m001 (2) 23 1 1 1
- 22 23 1 1 1
-H010 c013 m002 (7) 22 1 1 1
-H009 c006 m003 (8) 22 1 1 1
-H003 c004 m018 (9) 23 2 2 2
-H000 ancetre (14) 24 0 0 0
--------------------------------------------------------------------------
-Sum 21
-
-Tree length = 21
-Consistency index (CI) = 0.6190
-Homoplasy index (HI) = 0.3810
-CI excluding uninformative characters = 0.5789
-HI excluding uninformative characters = 0.4211
-Retention index (RI) = 0.8140
-Rescaled consistency index (RC) = 0.5039
-
- /------- H004 c002 m009
- /-----15
- | \------- H013 c004 m010
- /-----16
- | \-------------- H007 c015 m028
- /-----17
- | \--------------------- H005 c004 m010
- /-----18
- | \---------------------------- H011 c002 m011
- |
- /-----20 /------- H008 c011 m005
- | | |
- | \--------------------------19------- H014 c002 m003
- /-----21 |
- | | \------- H012 c004 m002
- | |
- | \------------------------------------------ H002 c006 m003
- |
- +------------------------------------------------- H006 c003 m001
- /-----23
- | | /------- H010 c013 m002
- | +----------------------------------------22
- | | \------- H009 c006 m003
-------24 |
- | \------------------------------------------------- H003 c004 m018
- |
- \-------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_24 --> node_23 13 1 1.000 1 ==> 2
- node_23 --> node_21 6 1 1.000 2 ==> 1
- 7 1 1.000 2 ==> 1
- node_21 --> node_20 8 1 1.000 2 ==> 1
- node_20 --> node_18 1 1 0.500 2 ==> 1
- 2 1 0.500 2 ==> 1
- node_18 --> node_17 10 1 0.500 2 --> 1
- node_17 --> node_16 9 1 0.500 2 ==> 1
- node_15 --> H013 c004 m010 12 1 0.333 2 ==> 1
- node_16 --> H007 c015 m028 11 1 0.333 2 --> 1
- node_17 --> H005 c004 m010 11 1 0.333 2 --> 1
- node_20 --> node_19 9 1 0.500 2 ==> 1
- 10 1 0.500 2 --> 1
- node_19 --> H008 c011 m005 12 1 0.333 2 ==> 1
- node_19 --> H014 c002 m003 11 1 0.333 2 ==> 1
- node_23 --> H006 c003 m001 5 1 1.000 2 ==> 1
- node_23 --> node_22 3 1 1.000 2 ==> 1
- node_22 --> H010 c013 m002 4 1 1.000 2 ==> 1
- node_22 --> H009 c006 m003 12 1 0.333 2 ==> 1
- node_23 --> H003 c004 m018 1 1 0.500 2 ==> 1
- 2 1 0.500 2 ==> 1
-
-Tree number 9:
-
-Branch lengths and linkages for tree #9
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 24 root 0 0 0
- 23 24 1 1 1
- 21 23 2 2 2
- 20 21 3 3 3
- 19 20 0 0 1
- 18 19 2 2 2
- 17 18 0 0 1
-H004 c002 m009 (1) 17 0 0 0
- 16 17 0 0 1
- 15 16 1 1 1
-H005 c004 m010 (3) 15 1 0 1
-H011 c002 m011 (5) 15 1 1 2
-H007 c015 m028 (12) 16 1 0 1
-H013 c004 m010 (11) 18 1 0 1
-H008 c011 m005 (4) 19 1 0 1
-H014 c002 m003 (10) 20 1 1 1
-H012 c004 m002 (13) 20 0 0 0
-H002 c006 m003 (6) 21 0 0 0
-H006 c003 m001 (2) 23 1 1 1
- 22 23 1 1 1
-H010 c013 m002 (7) 22 1 1 1
-H009 c006 m003 (8) 22 1 1 1
-H003 c004 m018 (9) 23 2 2 2
-H000 ancetre (14) 24 0 0 0
--------------------------------------------------------------------------
-Sum 21
-
-Tree length = 21
-Consistency index (CI) = 0.6190
-Homoplasy index (HI) = 0.3810
-CI excluding uninformative characters = 0.5789
-HI excluding uninformative characters = 0.4211
-Retention index (RI) = 0.8140
-Rescaled consistency index (RC) = 0.5039
-
- /------------------- H004 c002 m009
- |
- | /------ H005 c004 m010
- /----17 /-----15
- | | | \------ H011 c002 m011
- | \----16
- /----18 \------------- H007 c015 m028
- | |
- /-----19 \------------------------- H013 c004 m010
- | |
- | \------------------------------- H008 c011 m005
- /----20
- | +-------------------------------------- H014 c002 m003
- | |
- /----21 \-------------------------------------- H012 c004 m002
- | |
- | \-------------------------------------------- H002 c006 m003
- |
- +-------------------------------------------------- H006 c003 m001
- /-----23
- | | /------ H010 c013 m002
- | +------------------------------------------22
- | | \------ H009 c006 m003
------24 |
- | \-------------------------------------------------- H003 c004 m018
- |
- \--------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_24 --> node_23 13 1 1.000 1 ==> 2
- node_23 --> node_21 6 1 1.000 2 ==> 1
- 7 1 1.000 2 ==> 1
- node_21 --> node_20 8 1 1.000 2 ==> 1
- 9 1 0.500 2 ==> 1
- 10 1 0.500 2 ==> 1
- node_19 --> node_18 1 1 0.500 2 ==> 1
- 2 1 0.500 2 ==> 1
- node_16 --> node_15 9 1 0.500 1 ==> 2
- node_15 --> H005 c004 m010 11 1 0.333 2 --> 1
- node_15 --> H011 c002 m011 10 1 0.500 1 ==> 2
- node_16 --> H007 c015 m028 11 1 0.333 2 --> 1
- node_18 --> H013 c004 m010 12 1 0.333 2 --> 1
- node_19 --> H008 c011 m005 12 1 0.333 2 --> 1
- node_20 --> H014 c002 m003 11 1 0.333 2 ==> 1
- node_23 --> H006 c003 m001 5 1 1.000 2 ==> 1
- node_23 --> node_22 3 1 1.000 2 ==> 1
- node_22 --> H010 c013 m002 4 1 1.000 2 ==> 1
- node_22 --> H009 c006 m003 12 1 0.333 2 ==> 1
- node_23 --> H003 c004 m018 1 1 0.500 2 ==> 1
- 2 1 0.500 2 ==> 1
-
-Tree number 10:
-
-Branch lengths and linkages for tree #10
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 22 root 0 0 0
- 21 22 1 1 1
- 19 21 2 2 2
- 18 19 3 3 3
- 17 18 2 2 2
-H004 c002 m009 (1) 17 0 0 0
- 16 17 0 0 1
- 15 16 1 1 1
-H005 c004 m010 (3) 15 1 0 1
-H007 c015 m028 (12) 15 0 0 1
-H011 c002 m011 (5) 16 2 1 2
-H013 c004 m010 (11) 17 1 1 1
-H008 c011 m005 (4) 18 1 1 1
-H014 c002 m003 (10) 18 1 1 1
-H012 c004 m002 (13) 18 0 0 0
-H002 c006 m003 (6) 19 0 0 0
-H006 c003 m001 (2) 21 1 1 1
- 20 21 1 1 1
-H010 c013 m002 (7) 20 1 1 1
-H009 c006 m003 (8) 20 1 1 1
-H003 c004 m018 (9) 21 2 2 2
-H000 ancetre (14) 22 0 0 0
--------------------------------------------------------------------------
-Sum 21
-
-Tree length = 21
-Consistency index (CI) = 0.6190
-Homoplasy index (HI) = 0.3810
-CI excluding uninformative characters = 0.5789
-HI excluding uninformative characters = 0.4211
-Retention index (RI) = 0.8140
-Rescaled consistency index (RC) = 0.5039
-
- /------------------------ H004 c002 m009
- |
- | /-------- H005 c004 m010
- | /------15
- /------17 | \-------- H007 c015 m028
- | +------16
- | | \---------------- H011 c002 m011
- | |
- | \------------------------ H013 c004 m010
- /-----18
- | +-------------------------------- H008 c011 m005
- | |
- | +-------------------------------- H014 c002 m003
- /------19 |
- | | \-------------------------------- H012 c004 m002
- | |
- | \--------------------------------------- H002 c006 m003
- |
- +----------------------------------------------- H006 c003 m001
- /------21
- | | /-------- H010 c013 m002
- | +-------------------------------------20
- | | \-------- H009 c006 m003
--------22 |
- | \----------------------------------------------- H003 c004 m018
- |
- \------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_22 --> node_21 13 1 1.000 1 ==> 2
- node_21 --> node_19 6 1 1.000 2 ==> 1
- 7 1 1.000 2 ==> 1
- node_19 --> node_18 8 1 1.000 2 ==> 1
- 9 1 0.333 2 ==> 1
- 10 1 0.500 2 ==> 1
- node_18 --> node_17 1 1 0.500 2 ==> 1
- 2 1 0.500 2 ==> 1
- node_16 --> node_15 11 1 0.500 2 ==> 1
- node_15 --> H005 c004 m010 9 1 0.333 1 --> 2
- node_16 --> H011 c002 m011 9 1 0.333 1 --> 2
- 10 1 0.500 1 ==> 2
- node_17 --> H013 c004 m010 12 1 0.333 2 ==> 1
- node_18 --> H008 c011 m005 12 1 0.333 2 ==> 1
- node_18 --> H014 c002 m003 11 1 0.500 2 ==> 1
- node_21 --> H006 c003 m001 5 1 1.000 2 ==> 1
- node_21 --> node_20 3 1 1.000 2 ==> 1
- node_20 --> H010 c013 m002 4 1 1.000 2 ==> 1
- node_20 --> H009 c006 m003 12 1 0.333 2 ==> 1
- node_21 --> H003 c004 m018 1 1 0.500 2 ==> 1
- 2 1 0.500 2 ==> 1
-
-Tree number 11:
-
-Branch lengths and linkages for tree #11
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 24 root 0 0 0
- 23 24 1 1 1
- 21 23 2 2 2
- 20 21 3 3 3
- 19 20 0 0 1
- 18 19 2 2 2
- 17 18 0 0 1
- 15 17 0 0 1
-H004 c002 m009 (1) 15 0 0 0
-H013 c004 m010 (11) 15 1 1 1
- 16 17 1 1 1
-H005 c004 m010 (3) 16 1 0 1
-H011 c002 m011 (5) 16 1 1 2
-H007 c015 m028 (12) 18 1 0 1
-H014 c002 m003 (10) 19 1 0 1
-H008 c011 m005 (4) 20 1 1 1
-H012 c004 m002 (13) 20 0 0 0
-H002 c006 m003 (6) 21 0 0 0
-H006 c003 m001 (2) 23 1 1 1
- 22 23 1 1 1
-H010 c013 m002 (7) 22 1 1 1
-H009 c006 m003 (8) 22 1 1 1
-H003 c004 m018 (9) 23 2 2 2
-H000 ancetre (14) 24 0 0 0
--------------------------------------------------------------------------
-Sum 21
-
-Tree length = 21
-Consistency index (CI) = 0.6190
-Homoplasy index (HI) = 0.3810
-CI excluding uninformative characters = 0.5789
-HI excluding uninformative characters = 0.4211
-Retention index (RI) = 0.8140
-Rescaled consistency index (RC) = 0.5039
-
- /------- H004 c002 m009
- /-----15
- | \------- H013 c004 m010
- /-----17
- | | /------- H005 c004 m010
- | \-----16
- /-----18 \------- H011 c002 m011
- | |
- /-----19 \--------------------- H007 c015 m028
- | |
- | \---------------------------- H014 c002 m003
- /-----20
- | +----------------------------------- H008 c011 m005
- | |
- /-----21 \----------------------------------- H012 c004 m002
- | |
- | \------------------------------------------ H002 c006 m003
- |
- +------------------------------------------------- H006 c003 m001
- /-----23
- | | /------- H010 c013 m002
- | +----------------------------------------22
- | | \------- H009 c006 m003
-------24 |
- | \------------------------------------------------- H003 c004 m018
- |
- \-------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_24 --> node_23 13 1 1.000 1 ==> 2
- node_23 --> node_21 6 1 1.000 2 ==> 1
- 7 1 1.000 2 ==> 1
- node_21 --> node_20 8 1 1.000 2 ==> 1
- 9 1 0.500 2 ==> 1
- 10 1 0.500 2 ==> 1
- node_19 --> node_18 1 1 0.500 2 ==> 1
- 2 1 0.500 2 ==> 1
- node_15 --> H013 c004 m010 12 1 0.333 2 ==> 1
- node_17 --> node_16 9 1 0.500 1 ==> 2
- node_16 --> H005 c004 m010 11 1 0.333 2 --> 1
- node_16 --> H011 c002 m011 10 1 0.500 1 ==> 2
- node_18 --> H007 c015 m028 11 1 0.333 2 --> 1
- node_19 --> H014 c002 m003 11 1 0.333 2 --> 1
- node_20 --> H008 c011 m005 12 1 0.333 2 ==> 1
- node_23 --> H006 c003 m001 5 1 1.000 2 ==> 1
- node_23 --> node_22 3 1 1.000 2 ==> 1
- node_22 --> H010 c013 m002 4 1 1.000 2 ==> 1
- node_22 --> H009 c006 m003 12 1 0.333 2 ==> 1
- node_23 --> H003 c004 m018 1 1 0.500 2 ==> 1
- 2 1 0.500 2 ==> 1
-
-Tree number 12:
-
-Branch lengths and linkages for tree #12
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 21 root 0 0 0
- 20 21 1 1 1
- 18 20 2 2 2
- 17 18 3 3 3
- 16 17 2 2 2
-H004 c002 m009 (1) 16 0 0 0
- 15 16 1 1 1
-H005 c004 m010 (3) 15 1 1 1
-H007 c015 m028 (12) 15 0 0 0
-H011 c002 m011 (5) 16 2 2 2
-H013 c004 m010 (11) 16 1 1 1
-H008 c011 m005 (4) 17 1 1 1
-H014 c002 m003 (10) 17 1 1 1
-H012 c004 m002 (13) 17 0 0 0
-H002 c006 m003 (6) 18 0 0 0
-H006 c003 m001 (2) 20 1 1 1
- 19 20 1 1 1
-H010 c013 m002 (7) 19 1 1 1
-H009 c006 m003 (8) 19 1 1 1
-H003 c004 m018 (9) 20 2 2 2
-H000 ancetre (14) 21 0 0 0
--------------------------------------------------------------------------
-Sum 21
-
-Tree length = 21
-Consistency index (CI) = 0.6190
-Homoplasy index (HI) = 0.3810
-CI excluding uninformative characters = 0.5789
-HI excluding uninformative characters = 0.4211
-Retention index (RI) = 0.8140
-Rescaled consistency index (RC) = 0.5039
-
- /------------------ H004 c002 m009
- |
- | /--------- H005 c004 m010
- +-------15
- /-------16 \--------- H007 c015 m028
- | |
- | +------------------ H011 c002 m011
- | |
- | \------------------ H013 c004 m010
- /-------17
- | +--------------------------- H008 c011 m005
- | |
- | +--------------------------- H014 c002 m003
- /-------18 |
- | | \--------------------------- H012 c004 m002
- | |
- | \------------------------------------ H002 c006 m003
- |
- +--------------------------------------------- H006 c003 m001
- /-------20
- | | /--------- H010 c013 m002
- | +----------------------------------19
- | | \--------- H009 c006 m003
---------21 |
- | \--------------------------------------------- H003 c004 m018
- |
- \------------------------------------------------------ H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_21 --> node_20 13 1 1.000 1 ==> 2
- node_20 --> node_18 6 1 1.000 2 ==> 1
- 7 1 1.000 2 ==> 1
- node_18 --> node_17 8 1 1.000 2 ==> 1
- 9 1 0.333 2 ==> 1
- 10 1 0.500 2 ==> 1
- node_17 --> node_16 1 1 0.500 2 ==> 1
- 2 1 0.500 2 ==> 1
- node_16 --> node_15 11 1 0.500 2 ==> 1
- node_15 --> H005 c004 m010 9 1 0.333 1 ==> 2
- node_16 --> H011 c002 m011 9 1 0.333 1 ==> 2
- 10 1 0.500 1 ==> 2
- node_16 --> H013 c004 m010 12 1 0.333 2 ==> 1
- node_17 --> H008 c011 m005 12 1 0.333 2 ==> 1
- node_17 --> H014 c002 m003 11 1 0.500 2 ==> 1
- node_20 --> H006 c003 m001 5 1 1.000 2 ==> 1
- node_20 --> node_19 3 1 1.000 2 ==> 1
- node_19 --> H010 c013 m002 4 1 1.000 2 ==> 1
- node_19 --> H009 c006 m003 12 1 0.333 2 ==> 1
- node_20 --> H003 c004 m018 1 1 0.500 2 ==> 1
- 2 1 0.500 2 ==> 1
-
-Tree number 13:
-
-Branch lengths and linkages for tree #13
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 23 root 0 0 0
- 22 23 1 1 1
- 20 22 0 0 2
- 19 20 2 2 2
- 18 19 3 1 3
- 17 18 1 1 1
- 16 17 1 1 1
-H004 c002 m009 (1) 16 0 0 0
- 15 16 2 2 2
-H008 c011 m005 (4) 15 1 1 1
-H014 c002 m003 (10) 15 1 1 1
-H012 c004 m002 (13) 15 0 0 0
-H013 c004 m010 (11) 16 1 1 1
-H007 c015 m028 (12) 16 1 1 1
-H005 c004 m010 (3) 17 1 1 1
-H011 c002 m011 (5) 18 0 0 0
-H003 c004 m018 (9) 19 0 0 2
-H002 c006 m003 (6) 20 2 0 2
-H006 c003 m001 (2) 22 1 1 1
- 21 22 1 1 1
-H010 c013 m002 (7) 21 1 1 1
-H009 c006 m003 (8) 21 1 1 1
-H000 ancetre (14) 23 0 0 0
--------------------------------------------------------------------------
-Sum 21
-
-Tree length = 21
-Consistency index (CI) = 0.6190
-Homoplasy index (HI) = 0.3810
-CI excluding uninformative characters = 0.5789
-HI excluding uninformative characters = 0.4211
-Retention index (RI) = 0.8140
-Rescaled consistency index (RC) = 0.5039
-
- /-------------- H004 c002 m009
- |
- | /------- H008 c011 m005
- | |
- +-----15------- H014 c002 m003
- /-----16 |
- | | \------- H012 c004 m002
- | |
- | +-------------- H013 c004 m010
- /-----17 |
- | | \-------------- H007 c015 m028
- | |
- /-----18 \--------------------- H005 c004 m010
- | |
- /-----19 \---------------------------- H011 c002 m011
- | |
- /-----20 \----------------------------------- H003 c004 m018
- | |
- | \------------------------------------------ H002 c006 m003
- |
- /-----22------------------------------------------------- H006 c003 m001
- | |
- | | /------- H010 c013 m002
-------23 \----------------------------------------21
- | \------- H009 c006 m003
- |
- \-------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_23 --> node_22 13 1 1.000 1 ==> 2
- node_20 --> node_19 1 1 0.500 2 ==> 1
- 2 1 0.500 2 ==> 1
- node_19 --> node_18 6 1 0.500 2 --> 1
- 7 1 0.500 2 --> 1
- 8 1 1.000 2 ==> 1
- node_18 --> node_17 10 1 1.000 2 ==> 1
- node_17 --> node_16 9 1 1.000 2 ==> 1
- node_16 --> node_15 1 1 0.500 1 ==> 2
- 2 1 0.500 1 ==> 2
- node_15 --> H008 c011 m005 12 1 0.333 2 ==> 1
- node_15 --> H014 c002 m003 11 1 0.333 2 ==> 1
- node_16 --> H013 c004 m010 12 1 0.333 2 ==> 1
- node_16 --> H007 c015 m028 11 1 0.333 2 ==> 1
- node_17 --> H005 c004 m010 11 1 0.333 2 ==> 1
- node_20 --> H002 c006 m003 6 1 0.500 2 --> 1
- 7 1 0.500 2 --> 1
- node_22 --> H006 c003 m001 5 1 1.000 2 ==> 1
- node_22 --> node_21 3 1 1.000 2 ==> 1
- node_21 --> H010 c013 m002 4 1 1.000 2 ==> 1
- node_21 --> H009 c006 m003 12 1 0.333 2 ==> 1
-
-Tree number 14:
-
-Branch lengths and linkages for tree #14
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 22 root 0 0 0
- 21 22 1 1 1
- 19 21 2 2 2
- 18 19 3 3 3
- 17 18 1 1 1
- 16 17 1 1 1
-H004 c002 m009 (1) 16 0 0 0
- 15 16 2 2 2
-H008 c011 m005 (4) 15 1 1 1
-H014 c002 m003 (10) 15 1 1 1
-H012 c004 m002 (13) 15 0 0 0
-H013 c004 m010 (11) 16 1 1 1
-H007 c015 m028 (12) 16 1 1 1
-H005 c004 m010 (3) 17 1 1 1
-H011 c002 m011 (5) 18 0 0 0
-H003 c004 m018 (9) 19 0 0 0
-H006 c003 m001 (2) 21 1 1 1
-H002 c006 m003 (6) 21 2 2 2
- 20 21 1 1 1
-H010 c013 m002 (7) 20 1 1 1
-H009 c006 m003 (8) 20 1 1 1
-H000 ancetre (14) 22 0 0 0
--------------------------------------------------------------------------
-Sum 21
-
-Tree length = 21
-Consistency index (CI) = 0.6190
-Homoplasy index (HI) = 0.3810
-CI excluding uninformative characters = 0.5789
-HI excluding uninformative characters = 0.4211
-Retention index (RI) = 0.8140
-Rescaled consistency index (RC) = 0.5039
-
- /---------------- H004 c002 m009
- |
- | /-------- H008 c011 m005
- | |
- +------15-------- H014 c002 m003
- /------16 |
- | | \-------- H012 c004 m002
- | |
- | +---------------- H013 c004 m010
- /------17 |
- | | \---------------- H007 c015 m028
- | |
- /-----18 \------------------------ H005 c004 m010
- | |
- /------19 \-------------------------------- H011 c002 m011
- | |
- | \--------------------------------------- H003 c004 m018
- |
- +----------------------------------------------- H006 c003 m001
- /------21
- | +----------------------------------------------- H002 c006 m003
- | |
- | | /-------- H010 c013 m002
--------22 \-------------------------------------20
- | \-------- H009 c006 m003
- |
- \------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_22 --> node_21 13 1 1.000 1 ==> 2
- node_21 --> node_19 1 1 0.500 2 ==> 1
- 2 1 0.500 2 ==> 1
- node_19 --> node_18 6 1 0.500 2 ==> 1
- 7 1 0.500 2 ==> 1
- 8 1 1.000 2 ==> 1
- node_18 --> node_17 10 1 1.000 2 ==> 1
- node_17 --> node_16 9 1 1.000 2 ==> 1
- node_16 --> node_15 1 1 0.500 1 ==> 2
- 2 1 0.500 1 ==> 2
- node_15 --> H008 c011 m005 12 1 0.333 2 ==> 1
- node_15 --> H014 c002 m003 11 1 0.333 2 ==> 1
- node_16 --> H013 c004 m010 12 1 0.333 2 ==> 1
- node_16 --> H007 c015 m028 11 1 0.333 2 ==> 1
- node_17 --> H005 c004 m010 11 1 0.333 2 ==> 1
- node_21 --> H006 c003 m001 5 1 1.000 2 ==> 1
- node_21 --> H002 c006 m003 6 1 0.500 2 ==> 1
- 7 1 0.500 2 ==> 1
- node_21 --> node_20 3 1 1.000 2 ==> 1
- node_20 --> H010 c013 m002 4 1 1.000 2 ==> 1
- node_20 --> H009 c006 m003 12 1 0.333 2 ==> 1
-
-Tree number 15:
-
-Branch lengths and linkages for tree #15
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 22 root 0 0 0
- 21 22 1 1 1
- 19 21 2 2 2
- 18 19 3 3 3
- 17 18 1 1 1
- 16 17 1 1 1
-H004 c002 m009 (1) 16 0 0 0
- 15 16 2 2 2
-H008 c011 m005 (4) 15 1 1 1
-H014 c002 m003 (10) 15 1 1 1
-H012 c004 m002 (13) 15 0 0 0
-H013 c004 m010 (11) 16 1 1 1
-H007 c015 m028 (12) 16 1 1 1
-H005 c004 m010 (3) 17 1 1 1
-H011 c002 m011 (5) 18 0 0 0
-H002 c006 m003 (6) 19 0 0 0
-H006 c003 m001 (2) 21 1 1 1
- 20 21 1 1 1
-H010 c013 m002 (7) 20 1 1 1
-H009 c006 m003 (8) 20 1 1 1
-H003 c004 m018 (9) 21 2 2 2
-H000 ancetre (14) 22 0 0 0
--------------------------------------------------------------------------
-Sum 21
-
-Tree length = 21
-Consistency index (CI) = 0.6190
-Homoplasy index (HI) = 0.3810
-CI excluding uninformative characters = 0.5789
-HI excluding uninformative characters = 0.4211
-Retention index (RI) = 0.8140
-Rescaled consistency index (RC) = 0.5039
-
- /---------------- H004 c002 m009
- |
- | /-------- H008 c011 m005
- | |
- +------15-------- H014 c002 m003
- /------16 |
- | | \-------- H012 c004 m002
- | |
- | +---------------- H013 c004 m010
- /------17 |
- | | \---------------- H007 c015 m028
- | |
- /-----18 \------------------------ H005 c004 m010
- | |
- /------19 \-------------------------------- H011 c002 m011
- | |
- | \--------------------------------------- H002 c006 m003
- |
- +----------------------------------------------- H006 c003 m001
- /------21
- | | /-------- H010 c013 m002
- | +-------------------------------------20
- | | \-------- H009 c006 m003
--------22 |
- | \----------------------------------------------- H003 c004 m018
- |
- \------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_22 --> node_21 13 1 1.000 1 ==> 2
- node_21 --> node_19 6 1 1.000 2 ==> 1
- 7 1 1.000 2 ==> 1
- node_19 --> node_18 1 1 0.333 2 ==> 1
- 2 1 0.333 2 ==> 1
- 8 1 1.000 2 ==> 1
- node_18 --> node_17 10 1 1.000 2 ==> 1
- node_17 --> node_16 9 1 1.000 2 ==> 1
- node_16 --> node_15 1 1 0.333 1 ==> 2
- 2 1 0.333 1 ==> 2
- node_15 --> H008 c011 m005 12 1 0.333 2 ==> 1
- node_15 --> H014 c002 m003 11 1 0.333 2 ==> 1
- node_16 --> H013 c004 m010 12 1 0.333 2 ==> 1
- node_16 --> H007 c015 m028 11 1 0.333 2 ==> 1
- node_17 --> H005 c004 m010 11 1 0.333 2 ==> 1
- node_21 --> H006 c003 m001 5 1 1.000 2 ==> 1
- node_21 --> node_20 3 1 1.000 2 ==> 1
- node_20 --> H010 c013 m002 4 1 1.000 2 ==> 1
- node_20 --> H009 c006 m003 12 1 0.333 2 ==> 1
- node_21 --> H003 c004 m018 1 1 0.333 2 ==> 1
- 2 1 0.333 2 ==> 1
-
-Tree number 16:
-
-Branch lengths and linkages for tree #16
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 23 root 0 0 0
- 22 23 1 1 1
- 20 22 0 0 2
- 19 20 2 2 2
- 18 19 3 1 3
- 17 18 2 2 2
-H004 c002 m009 (1) 17 0 0 0
- 15 17 1 1 1
-H005 c004 m010 (3) 15 1 1 1
-H007 c015 m028 (12) 15 0 0 0
- 16 17 2 2 2
-H008 c011 m005 (4) 16 1 1 1
-H014 c002 m003 (10) 16 1 1 1
-H012 c004 m002 (13) 16 0 0 0
-H013 c004 m010 (11) 17 1 1 1
-H011 c002 m011 (5) 18 0 0 0
-H002 c006 m003 (6) 19 0 0 2
-H003 c004 m018 (9) 20 2 0 2
-H006 c003 m001 (2) 22 1 1 1
- 21 22 1 1 1
-H010 c013 m002 (7) 21 1 1 1
-H009 c006 m003 (8) 21 1 1 1
-H000 ancetre (14) 23 0 0 0
--------------------------------------------------------------------------
-Sum 21
-
-Tree length = 21
-Consistency index (CI) = 0.6190
-Homoplasy index (HI) = 0.3810
-CI excluding uninformative characters = 0.5789
-HI excluding uninformative characters = 0.4211
-Retention index (RI) = 0.8140
-Rescaled consistency index (RC) = 0.5039
-
- /---------------- H004 c002 m009
- |
- | /-------- H005 c004 m010
- +------15
- | \-------- H007 c015 m028
- |
- /------17 /-------- H008 c011 m005
- | | |
- | +------16-------- H014 c002 m003
- | | |
- /------18 | \-------- H012 c004 m002
- | | |
- | | \---------------- H013 c004 m010
- /-----19 |
- | | \------------------------ H011 c002 m011
- | |
- /------20 \-------------------------------- H002 c006 m003
- | |
- | \--------------------------------------- H003 c004 m018
- |
- /------22----------------------------------------------- H006 c003 m001
- | |
- | | /-------- H010 c013 m002
--------23 \-------------------------------------21
- | \-------- H009 c006 m003
- |
- \------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_23 --> node_22 13 1 1.000 1 ==> 2
- node_20 --> node_19 6 1 1.000 2 ==> 1
- 7 1 1.000 2 ==> 1
- node_19 --> node_18 1 1 0.333 2 --> 1
- 2 1 0.333 2 --> 1
- 8 1 1.000 2 ==> 1
- node_18 --> node_17 9 1 0.500 2 ==> 1
- 10 1 1.000 2 ==> 1
- node_17 --> node_15 11 1 0.500 2 ==> 1
- node_15 --> H005 c004 m010 9 1 0.500 1 ==> 2
- node_17 --> node_16 1 1 0.333 1 ==> 2
- 2 1 0.333 1 ==> 2
- node_16 --> H008 c011 m005 12 1 0.333 2 ==> 1
- node_16 --> H014 c002 m003 11 1 0.500 2 ==> 1
- node_17 --> H013 c004 m010 12 1 0.333 2 ==> 1
- node_20 --> H003 c004 m018 1 1 0.333 2 --> 1
- 2 1 0.333 2 --> 1
- node_22 --> H006 c003 m001 5 1 1.000 2 ==> 1
- node_22 --> node_21 3 1 1.000 2 ==> 1
- node_21 --> H010 c013 m002 4 1 1.000 2 ==> 1
- node_21 --> H009 c006 m003 12 1 0.333 2 ==> 1
-
-Tree number 17:
-
-Branch lengths and linkages for tree #17
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 25 root 0 0 0
- 24 25 1 1 1
- 22 24 0 0 2
- 21 22 2 2 2
- 20 21 3 1 3
- 19 20 1 1 1
- 18 19 1 1 1
-H004 c002 m009 (1) 18 0 0 0
- 17 18 0 0 1
- 16 17 2 2 2
- 15 16 0 0 1
-H008 c011 m005 (4) 15 1 1 1
-H012 c004 m002 (13) 15 0 0 0
-H014 c002 m003 (10) 16 1 0 1
-H007 c015 m028 (12) 17 1 0 1
-H013 c004 m010 (11) 18 1 1 1
-H005 c004 m010 (3) 19 1 1 1
-H011 c002 m011 (5) 20 0 0 0
-H002 c006 m003 (6) 21 0 0 2
-H003 c004 m018 (9) 22 2 0 2
-H006 c003 m001 (2) 24 1 1 1
- 23 24 1 1 1
-H010 c013 m002 (7) 23 1 1 1
-H009 c006 m003 (8) 23 1 1 1
-H000 ancetre (14) 25 0 0 0
--------------------------------------------------------------------------
-Sum 21
-
-Tree length = 21
-Consistency index (CI) = 0.6190
-Homoplasy index (HI) = 0.3810
-CI excluding uninformative characters = 0.5789
-HI excluding uninformative characters = 0.4211
-Retention index (RI) = 0.8140
-Rescaled consistency index (RC) = 0.5039
-
- /----------------------- H004 c002 m009
- |
- | /------ H008 c011 m005
- | /---15
- | | \------ H012 c004 m002
- /----18 /----16
- | | | \----------- H014 c002 m003
- | +----17
- | | \----------------- H007 c015 m028
- /---19 |
- | | \----------------------- H013 c004 m010
- | |
- /----20 \----------------------------- H005 c004 m010
- | |
- /----21 \---------------------------------- H011 c002 m011
- | |
- /----22 \---------------------------------------- H002 c006 m003
- | |
- | \---------------------------------------------- H003 c004 m018
- |
- /---24---------------------------------------------------- H006 c003 m001
- | |
- | | /------ H010 c013 m002
------25 \--------------------------------------------23
- | \------ H009 c006 m003
- |
- \--------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_25 --> node_24 13 1 1.000 1 ==> 2
- node_22 --> node_21 6 1 1.000 2 ==> 1
- 7 1 1.000 2 ==> 1
- node_21 --> node_20 1 1 0.333 2 --> 1
- 2 1 0.333 2 --> 1
- 8 1 1.000 2 ==> 1
- node_20 --> node_19 10 1 1.000 2 ==> 1
- node_19 --> node_18 9 1 1.000 2 ==> 1
- node_17 --> node_16 1 1 0.333 1 ==> 2
- 2 1 0.333 1 ==> 2
- node_15 --> H008 c011 m005 12 1 0.333 2 ==> 1
- node_16 --> H014 c002 m003 11 1 0.333 2 --> 1
- node_17 --> H007 c015 m028 11 1 0.333 2 --> 1
- node_18 --> H013 c004 m010 12 1 0.333 2 ==> 1
- node_19 --> H005 c004 m010 11 1 0.333 2 ==> 1
- node_22 --> H003 c004 m018 1 1 0.333 2 --> 1
- 2 1 0.333 2 --> 1
- node_24 --> H006 c003 m001 5 1 1.000 2 ==> 1
- node_24 --> node_23 3 1 1.000 2 ==> 1
- node_23 --> H010 c013 m002 4 1 1.000 2 ==> 1
- node_23 --> H009 c006 m003 12 1 0.333 2 ==> 1
-
-Tree number 18:
-
-Branch lengths and linkages for tree #18
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 23 root 0 0 0
- 22 23 1 1 1
- 20 22 2 2 2
- 19 20 1 1 2
- 17 19 2 2 2
- 16 17 1 0 1
- 15 16 1 1 1
-H004 c002 m009 (1) 15 0 0 0
-H013 c004 m010 (11) 15 1 1 1
-H007 c015 m028 (12) 15 1 1 1
-H005 c004 m010 (3) 16 1 1 1
-H011 c002 m011 (5) 17 0 0 1
- 18 19 2 1 2
-H008 c011 m005 (4) 18 1 1 1
-H014 c002 m003 (10) 18 1 1 1
-H012 c004 m002 (13) 18 0 0 0
-H002 c006 m003 (6) 20 0 0 0
-H006 c003 m001 (2) 22 1 1 1
- 21 22 1 1 1
-H010 c013 m002 (7) 21 1 1 1
-H009 c006 m003 (8) 21 1 1 1
-H003 c004 m018 (9) 22 2 2 2
-H000 ancetre (14) 23 0 0 0
--------------------------------------------------------------------------
-Sum 21
-
-Tree length = 21
-Consistency index (CI) = 0.6190
-Homoplasy index (HI) = 0.3810
-CI excluding uninformative characters = 0.5789
-HI excluding uninformative characters = 0.4211
-Retention index (RI) = 0.8140
-Rescaled consistency index (RC) = 0.5039
-
- /-------- H004 c002 m009
- |
- /------15-------- H013 c004 m010
- | |
- /------16 \-------- H007 c015 m028
- | |
- /------17 \---------------- H005 c004 m010
- | |
- | \------------------------ H011 c002 m011
- /-----19
- | | /-------- H008 c011 m005
- | | |
- | \----------------------18-------- H014 c002 m003
- /------20 |
- | | \-------- H012 c004 m002
- | |
- | \--------------------------------------- H002 c006 m003
- |
- +----------------------------------------------- H006 c003 m001
- /------22
- | | /-------- H010 c013 m002
- | +-------------------------------------21
- | | \-------- H009 c006 m003
--------23 |
- | \----------------------------------------------- H003 c004 m018
- |
- \------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_23 --> node_22 13 1 1.000 1 ==> 2
- node_22 --> node_20 6 1 1.000 2 ==> 1
- 7 1 1.000 2 ==> 1
- node_20 --> node_19 8 1 1.000 2 ==> 1
- node_19 --> node_17 1 1 0.500 2 ==> 1
- 2 1 0.500 2 ==> 1
- node_17 --> node_16 10 1 0.500 2 --> 1
- node_16 --> node_15 9 1 0.500 2 ==> 1
- node_15 --> H013 c004 m010 12 1 0.333 2 ==> 1
- node_15 --> H007 c015 m028 11 1 0.333 2 ==> 1
- node_16 --> H005 c004 m010 11 1 0.333 2 ==> 1
- node_19 --> node_18 9 1 0.500 2 ==> 1
- 10 1 0.500 2 --> 1
- node_18 --> H008 c011 m005 12 1 0.333 2 ==> 1
- node_18 --> H014 c002 m003 11 1 0.333 2 ==> 1
- node_22 --> H006 c003 m001 5 1 1.000 2 ==> 1
- node_22 --> node_21 3 1 1.000 2 ==> 1
- node_21 --> H010 c013 m002 4 1 1.000 2 ==> 1
- node_21 --> H009 c006 m003 12 1 0.333 2 ==> 1
- node_22 --> H003 c004 m018 1 1 0.500 2 ==> 1
- 2 1 0.500 2 ==> 1
-
-Tree number 19:
-
-Branch lengths and linkages for tree #19
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 25 root 0 0 0
- 24 25 1 1 1
- 22 24 0 0 2
- 21 22 2 2 2
- 20 21 3 1 3
- 19 20 1 1 1
- 18 19 1 1 1
-H004 c002 m009 (1) 18 0 0 0
- 17 18 0 0 1
- 16 17 2 2 2
-H008 c011 m005 (4) 16 1 0 1
- 15 16 0 0 1
-H014 c002 m003 (10) 15 1 1 1
-H012 c004 m002 (13) 15 0 0 0
-H013 c004 m010 (11) 17 1 0 1
-H007 c015 m028 (12) 18 1 1 1
-H005 c004 m010 (3) 19 1 1 1
-H011 c002 m011 (5) 20 0 0 0
-H002 c006 m003 (6) 21 0 0 2
-H003 c004 m018 (9) 22 2 0 2
-H006 c003 m001 (2) 24 1 1 1
- 23 24 1 1 1
-H010 c013 m002 (7) 23 1 1 1
-H009 c006 m003 (8) 23 1 1 1
-H000 ancetre (14) 25 0 0 0
--------------------------------------------------------------------------
-Sum 21
-
-Tree length = 21
-Consistency index (CI) = 0.6190
-Homoplasy index (HI) = 0.3810
-CI excluding uninformative characters = 0.5789
-HI excluding uninformative characters = 0.4211
-Retention index (RI) = 0.8140
-Rescaled consistency index (RC) = 0.5039
-
- /----------------------- H004 c002 m009
- |
- | /----------- H008 c011 m005
- | |
- | /----16 /------ H014 c002 m003
- /----18 | \---15
- | +----17 \------ H012 c004 m002
- | | |
- | | \----------------- H013 c004 m010
- /---19 |
- | | \----------------------- H007 c015 m028
- | |
- /----20 \----------------------------- H005 c004 m010
- | |
- /----21 \---------------------------------- H011 c002 m011
- | |
- /----22 \---------------------------------------- H002 c006 m003
- | |
- | \---------------------------------------------- H003 c004 m018
- |
- /---24---------------------------------------------------- H006 c003 m001
- | |
- | | /------ H010 c013 m002
------25 \--------------------------------------------23
- | \------ H009 c006 m003
- |
- \--------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_25 --> node_24 13 1 1.000 1 ==> 2
- node_22 --> node_21 6 1 1.000 2 ==> 1
- 7 1 1.000 2 ==> 1
- node_21 --> node_20 1 1 0.333 2 --> 1
- 2 1 0.333 2 --> 1
- 8 1 1.000 2 ==> 1
- node_20 --> node_19 10 1 1.000 2 ==> 1
- node_19 --> node_18 9 1 1.000 2 ==> 1
- node_17 --> node_16 1 1 0.333 1 ==> 2
- 2 1 0.333 1 ==> 2
- node_16 --> H008 c011 m005 12 1 0.333 2 --> 1
- node_15 --> H014 c002 m003 11 1 0.333 2 ==> 1
- node_17 --> H013 c004 m010 12 1 0.333 2 --> 1
- node_18 --> H007 c015 m028 11 1 0.333 2 ==> 1
- node_19 --> H005 c004 m010 11 1 0.333 2 ==> 1
- node_22 --> H003 c004 m018 1 1 0.333 2 --> 1
- 2 1 0.333 2 --> 1
- node_24 --> H006 c003 m001 5 1 1.000 2 ==> 1
- node_24 --> node_23 3 1 1.000 2 ==> 1
- node_23 --> H010 c013 m002 4 1 1.000 2 ==> 1
- node_23 --> H009 c006 m003 12 1 0.333 2 ==> 1
-
-Tree number 20:
-
-Branch lengths and linkages for tree #20
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 25 root 0 0 0
- 24 25 1 1 1
- 22 24 0 0 2
- 21 22 2 2 2
- 20 21 3 1 3
- 19 20 1 1 2
- 18 19 1 1 1
- 15 18 0 0 1
-H004 c002 m009 (1) 15 0 0 0
-H013 c004 m010 (11) 15 1 1 1
- 17 18 2 2 2
- 16 17 0 0 1
-H008 c011 m005 (4) 16 1 1 1
-H012 c004 m002 (13) 16 0 0 0
-H014 c002 m003 (10) 17 1 0 1
-H007 c015 m028 (12) 18 1 0 1
-H005 c004 m010 (3) 19 1 0 1
-H011 c002 m011 (5) 20 0 0 0
-H002 c006 m003 (6) 21 0 0 2
-H003 c004 m018 (9) 22 2 0 2
-H006 c003 m001 (2) 24 1 1 1
- 23 24 1 1 1
-H010 c013 m002 (7) 23 1 1 1
-H009 c006 m003 (8) 23 1 1 1
-H000 ancetre (14) 25 0 0 0
--------------------------------------------------------------------------
-Sum 21
-
-Tree length = 21
-Consistency index (CI) = 0.6190
-Homoplasy index (HI) = 0.3810
-CI excluding uninformative characters = 0.5789
-HI excluding uninformative characters = 0.4211
-Retention index (RI) = 0.8140
-Rescaled consistency index (RC) = 0.5039
-
- /------ H004 c002 m009
- /-----------15
- | \------ H013 c004 m010
- |
- | /------ H008 c011 m005
- | /-----16
- /----18 | \------ H012 c004 m002
- | +----17
- | | \------------- H014 c002 m003
- /----19 |
- | | \------------------- H007 c015 m028
- | |
- /-----20 \------------------------- H005 c004 m010
- | |
- /----21 \------------------------------- H011 c002 m011
- | |
- /----22 \-------------------------------------- H002 c006 m003
- | |
- | \-------------------------------------------- H003 c004 m018
- |
- /-----24-------------------------------------------------- H006 c003 m001
- | |
- | | /------ H010 c013 m002
------25 \------------------------------------------23
- | \------ H009 c006 m003
- |
- \--------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_25 --> node_24 13 1 1.000 1 ==> 2
- node_22 --> node_21 6 1 1.000 2 ==> 1
- 7 1 1.000 2 ==> 1
- node_21 --> node_20 1 1 0.333 2 --> 1
- 2 1 0.333 2 --> 1
- 8 1 1.000 2 ==> 1
- node_20 --> node_19 10 1 1.000 2 ==> 1
- node_19 --> node_18 9 1 1.000 2 ==> 1
- node_15 --> H013 c004 m010 12 1 0.333 2 ==> 1
- node_18 --> node_17 1 1 0.333 1 ==> 2
- 2 1 0.333 1 ==> 2
- node_16 --> H008 c011 m005 12 1 0.333 2 ==> 1
- node_17 --> H014 c002 m003 11 1 0.333 2 --> 1
- node_18 --> H007 c015 m028 11 1 0.333 2 --> 1
- node_19 --> H005 c004 m010 11 1 0.333 2 --> 1
- node_22 --> H003 c004 m018 1 1 0.333 2 --> 1
- 2 1 0.333 2 --> 1
- node_24 --> H006 c003 m001 5 1 1.000 2 ==> 1
- node_24 --> node_23 3 1 1.000 2 ==> 1
- node_23 --> H010 c013 m002 4 1 1.000 2 ==> 1
- node_23 --> H009 c006 m003 12 1 0.333 2 ==> 1
-
-Tree number 21:
-
-Branch lengths and linkages for tree #21
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 24 root 0 0 0
- 23 24 1 1 1
- 21 23 0 0 2
- 20 21 2 2 2
- 19 20 3 1 3
- 18 19 1 1 2
- 17 18 1 1 1
- 16 17 0 0 1
-H004 c002 m009 (1) 16 0 0 0
- 15 16 2 2 2
-H008 c011 m005 (4) 15 1 1 1
-H014 c002 m003 (10) 15 1 1 1
-H012 c004 m002 (13) 15 0 0 0
-H013 c004 m010 (11) 16 1 1 1
-H007 c015 m028 (12) 17 1 0 1
-H005 c004 m010 (3) 18 1 0 1
-H011 c002 m011 (5) 19 0 0 0
-H002 c006 m003 (6) 20 0 0 2
-H003 c004 m018 (9) 21 2 0 2
-H006 c003 m001 (2) 23 1 1 1
- 22 23 1 1 1
-H010 c013 m002 (7) 22 1 1 1
-H009 c006 m003 (8) 22 1 1 1
-H000 ancetre (14) 24 0 0 0
--------------------------------------------------------------------------
-Sum 21
-
-Tree length = 21
-Consistency index (CI) = 0.6190
-Homoplasy index (HI) = 0.3810
-CI excluding uninformative characters = 0.5789
-HI excluding uninformative characters = 0.4211
-Retention index (RI) = 0.8140
-Rescaled consistency index (RC) = 0.5039
-
- /------------- H004 c002 m009
- |
- | /------ H008 c011 m005
- | |
- /----16-----15------ H014 c002 m003
- | | |
- | | \------ H012 c004 m002
- /----17 |
- | | \------------- H013 c004 m010
- | |
- /----18 \------------------- H007 c015 m028
- | |
- /-----19 \------------------------- H005 c004 m010
- | |
- /----20 \------------------------------- H011 c002 m011
- | |
- /----21 \-------------------------------------- H002 c006 m003
- | |
- | \-------------------------------------------- H003 c004 m018
- |
- /-----23-------------------------------------------------- H006 c003 m001
- | |
- | | /------ H010 c013 m002
------24 \------------------------------------------22
- | \------ H009 c006 m003
- |
- \--------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_24 --> node_23 13 1 1.000 1 ==> 2
- node_21 --> node_20 6 1 1.000 2 ==> 1
- 7 1 1.000 2 ==> 1
- node_20 --> node_19 1 1 0.333 2 --> 1
- 2 1 0.333 2 --> 1
- 8 1 1.000 2 ==> 1
- node_19 --> node_18 10 1 1.000 2 ==> 1
- node_18 --> node_17 9 1 1.000 2 ==> 1
- node_16 --> node_15 1 1 0.333 1 ==> 2
- 2 1 0.333 1 ==> 2
- node_15 --> H008 c011 m005 12 1 0.333 2 ==> 1
- node_15 --> H014 c002 m003 11 1 0.333 2 ==> 1
- node_16 --> H013 c004 m010 12 1 0.333 2 ==> 1
- node_17 --> H007 c015 m028 11 1 0.333 2 --> 1
- node_18 --> H005 c004 m010 11 1 0.333 2 --> 1
- node_21 --> H003 c004 m018 1 1 0.333 2 --> 1
- 2 1 0.333 2 --> 1
- node_23 --> H006 c003 m001 5 1 1.000 2 ==> 1
- node_23 --> node_22 3 1 1.000 2 ==> 1
- node_22 --> H010 c013 m002 4 1 1.000 2 ==> 1
- node_22 --> H009 c006 m003 12 1 0.333 2 ==> 1
-
-Tree number 22:
-
-Branch lengths and linkages for tree #22
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 24 root 0 0 0
- 23 24 1 1 1
- 21 23 0 0 2
- 20 21 2 2 2
- 19 20 3 1 3
- 18 19 1 1 2
- 16 18 1 0 1
-H004 c002 m009 (1) 16 0 0 0
- 15 16 2 2 2
-H008 c011 m005 (4) 15 1 1 1
-H014 c002 m003 (10) 15 1 1 1
-H012 c004 m002 (13) 15 0 0 0
-H013 c004 m010 (11) 16 1 1 1
- 17 18 1 1 1
-H005 c004 m010 (3) 17 0 0 1
-H007 c015 m028 (12) 17 1 0 1
-H011 c002 m011 (5) 19 0 0 0
-H002 c006 m003 (6) 20 0 0 2
-H003 c004 m018 (9) 21 2 0 2
-H006 c003 m001 (2) 23 1 1 1
- 22 23 1 1 1
-H010 c013 m002 (7) 22 1 1 1
-H009 c006 m003 (8) 22 1 1 1
-H000 ancetre (14) 24 0 0 0
--------------------------------------------------------------------------
-Sum 21
-
-Tree length = 21
-Consistency index (CI) = 0.6190
-Homoplasy index (HI) = 0.3810
-CI excluding uninformative characters = 0.5789
-HI excluding uninformative characters = 0.4211
-Retention index (RI) = 0.8140
-Rescaled consistency index (RC) = 0.5039
-
- /-------------- H004 c002 m009
- |
- | /------- H008 c011 m005
- | |
- /-----16-----15------- H014 c002 m003
- | | |
- | | \------- H012 c004 m002
- | |
- /-----18 \-------------- H013 c004 m010
- | |
- | | /------- H005 c004 m010
- /-----19 \------------17
- | | \------- H007 c015 m028
- | |
- /-----20 \---------------------------- H011 c002 m011
- | |
- /-----21 \----------------------------------- H002 c006 m003
- | |
- | \------------------------------------------ H003 c004 m018
- |
- /-----23------------------------------------------------- H006 c003 m001
- | |
- | | /------- H010 c013 m002
-------24 \----------------------------------------22
- | \------- H009 c006 m003
- |
- \-------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_24 --> node_23 13 1 1.000 1 ==> 2
- node_21 --> node_20 6 1 1.000 2 ==> 1
- 7 1 1.000 2 ==> 1
- node_20 --> node_19 1 1 0.333 2 --> 1
- 2 1 0.333 2 --> 1
- 8 1 1.000 2 ==> 1
- node_19 --> node_18 10 1 1.000 2 ==> 1
- node_18 --> node_16 9 1 0.500 2 --> 1
- node_16 --> node_15 1 1 0.333 1 ==> 2
- 2 1 0.333 1 ==> 2
- node_15 --> H008 c011 m005 12 1 0.333 2 ==> 1
- node_15 --> H014 c002 m003 11 1 0.500 2 ==> 1
- node_16 --> H013 c004 m010 12 1 0.333 2 ==> 1
- node_18 --> node_17 11 1 0.500 2 ==> 1
- node_17 --> H007 c015 m028 9 1 0.500 2 --> 1
- node_21 --> H003 c004 m018 1 1 0.333 2 --> 1
- 2 1 0.333 2 --> 1
- node_23 --> H006 c003 m001 5 1 1.000 2 ==> 1
- node_23 --> node_22 3 1 1.000 2 ==> 1
- node_22 --> H010 c013 m002 4 1 1.000 2 ==> 1
- node_22 --> H009 c006 m003 12 1 0.333 2 ==> 1
-
-Tree number 23:
-
-Branch lengths and linkages for tree #23
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 26 root 0 0 0
- 25 26 1 1 1
- 23 25 0 0 2
- 22 23 2 2 2
- 21 22 3 1 3
- 20 21 1 1 2
- 19 20 1 1 1
- 18 19 0 0 1
- 15 18 0 0 1
-H004 c002 m009 (1) 15 0 0 0
-H013 c004 m010 (11) 15 1 1 1
- 17 18 2 2 2
- 16 17 0 0 1
-H008 c011 m005 (4) 16 1 1 1
-H012 c004 m002 (13) 16 0 0 0
-H014 c002 m003 (10) 17 1 0 1
-H007 c015 m028 (12) 19 1 0 1
-H005 c004 m010 (3) 20 1 0 1
-H011 c002 m011 (5) 21 0 0 0
-H002 c006 m003 (6) 22 0 0 2
-H003 c004 m018 (9) 23 2 0 2
-H006 c003 m001 (2) 25 1 1 1
- 24 25 1 1 1
-H010 c013 m002 (7) 24 1 1 1
-H009 c006 m003 (8) 24 1 1 1
-H000 ancetre (14) 26 0 0 0
--------------------------------------------------------------------------
-Sum 21
-
-Tree length = 21
-Consistency index (CI) = 0.6190
-Homoplasy index (HI) = 0.3810
-CI excluding uninformative characters = 0.5789
-HI excluding uninformative characters = 0.4211
-Retention index (RI) = 0.8140
-Rescaled consistency index (RC) = 0.5039
-
- /------ H004 c002 m009
- /---------15
- | \------ H013 c004 m010
- |
- /----18 /------ H008 c011 m005
- | | /---16
- | | | \------ H012 c004 m002
- /----19 \----17
- | | \----------- H014 c002 m003
- | |
- /---20 \----------------------- H007 c015 m028
- | |
- /----21 \----------------------------- H005 c004 m010
- | |
- /----22 \---------------------------------- H011 c002 m011
- | |
- /----23 \---------------------------------------- H002 c006 m003
- | |
- | \---------------------------------------------- H003 c004 m018
- |
- /---25---------------------------------------------------- H006 c003 m001
- | |
- | | /------ H010 c013 m002
------26 \--------------------------------------------24
- | \------ H009 c006 m003
- |
- \--------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_26 --> node_25 13 1 1.000 1 ==> 2
- node_23 --> node_22 6 1 1.000 2 ==> 1
- 7 1 1.000 2 ==> 1
- node_22 --> node_21 1 1 0.333 2 --> 1
- 2 1 0.333 2 --> 1
- 8 1 1.000 2 ==> 1
- node_21 --> node_20 10 1 1.000 2 ==> 1
- node_20 --> node_19 9 1 1.000 2 ==> 1
- node_15 --> H013 c004 m010 12 1 0.333 2 ==> 1
- node_18 --> node_17 1 1 0.333 1 ==> 2
- 2 1 0.333 1 ==> 2
- node_16 --> H008 c011 m005 12 1 0.333 2 ==> 1
- node_17 --> H014 c002 m003 11 1 0.333 2 --> 1
- node_19 --> H007 c015 m028 11 1 0.333 2 --> 1
- node_20 --> H005 c004 m010 11 1 0.333 2 --> 1
- node_23 --> H003 c004 m018 1 1 0.333 2 --> 1
- 2 1 0.333 2 --> 1
- node_25 --> H006 c003 m001 5 1 1.000 2 ==> 1
- node_25 --> node_24 3 1 1.000 2 ==> 1
- node_24 --> H010 c013 m002 4 1 1.000 2 ==> 1
- node_24 --> H009 c006 m003 12 1 0.333 2 ==> 1
-
-Tree number 24:
-
-Branch lengths and linkages for tree #24
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 23 root 0 0 0
- 22 23 1 1 1
- 20 22 2 2 2
- 19 20 3 3 3
- 18 19 1 1 2
- 17 18 1 1 1
- 16 17 0 0 1
-H004 c002 m009 (1) 16 0 0 0
- 15 16 2 2 2
-H008 c011 m005 (4) 15 1 1 1
-H014 c002 m003 (10) 15 1 1 1
-H012 c004 m002 (13) 15 0 0 0
-H013 c004 m010 (11) 16 1 1 1
-H007 c015 m028 (12) 17 1 0 1
-H005 c004 m010 (3) 18 1 0 1
-H011 c002 m011 (5) 19 0 0 0
-H002 c006 m003 (6) 20 0 0 0
-H006 c003 m001 (2) 22 1 1 1
- 21 22 1 1 1
-H010 c013 m002 (7) 21 1 1 1
-H009 c006 m003 (8) 21 1 1 1
-H003 c004 m018 (9) 22 2 2 2
-H000 ancetre (14) 23 0 0 0
--------------------------------------------------------------------------
-Sum 21
-
-Tree length = 21
-Consistency index (CI) = 0.6190
-Homoplasy index (HI) = 0.3810
-CI excluding uninformative characters = 0.5789
-HI excluding uninformative characters = 0.4211
-Retention index (RI) = 0.8140
-Rescaled consistency index (RC) = 0.5039
-
- /-------------- H004 c002 m009
- |
- | /------- H008 c011 m005
- | |
- /-----16-----15------- H014 c002 m003
- | | |
- | | \------- H012 c004 m002
- /-----17 |
- | | \-------------- H013 c004 m010
- | |
- /-----18 \--------------------- H007 c015 m028
- | |
- /-----19 \---------------------------- H005 c004 m010
- | |
- /-----20 \----------------------------------- H011 c002 m011
- | |
- | \------------------------------------------ H002 c006 m003
- |
- +------------------------------------------------- H006 c003 m001
- /-----22
- | | /------- H010 c013 m002
- | +----------------------------------------21
- | | \------- H009 c006 m003
-------23 |
- | \------------------------------------------------- H003 c004 m018
- |
- \-------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_23 --> node_22 13 1 1.000 1 ==> 2
- node_22 --> node_20 6 1 1.000 2 ==> 1
- 7 1 1.000 2 ==> 1
- node_20 --> node_19 1 1 0.333 2 ==> 1
- 2 1 0.333 2 ==> 1
- 8 1 1.000 2 ==> 1
- node_19 --> node_18 10 1 1.000 2 ==> 1
- node_18 --> node_17 9 1 1.000 2 ==> 1
- node_16 --> node_15 1 1 0.333 1 ==> 2
- 2 1 0.333 1 ==> 2
- node_15 --> H008 c011 m005 12 1 0.333 2 ==> 1
- node_15 --> H014 c002 m003 11 1 0.333 2 ==> 1
- node_16 --> H013 c004 m010 12 1 0.333 2 ==> 1
- node_17 --> H007 c015 m028 11 1 0.333 2 --> 1
- node_18 --> H005 c004 m010 11 1 0.333 2 --> 1
- node_22 --> H006 c003 m001 5 1 1.000 2 ==> 1
- node_22 --> node_21 3 1 1.000 2 ==> 1
- node_21 --> H010 c013 m002 4 1 1.000 2 ==> 1
- node_21 --> H009 c006 m003 12 1 0.333 2 ==> 1
- node_22 --> H003 c004 m018 1 1 0.333 2 ==> 1
- 2 1 0.333 2 ==> 1
-
-Tree number 25:
-
-Branch lengths and linkages for tree #25
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 24 root 0 0 0
- 23 24 1 1 1
- 21 23 2 2 2
- 20 21 2 2 3
- 18 20 2 2 2
- 15 18 1 0 1
-H004 c002 m009 (1) 15 0 0 0
-H013 c004 m010 (11) 15 1 1 1
- 17 18 0 0 1
- 16 17 1 1 1
-H005 c004 m010 (3) 16 0 0 1
-H007 c015 m028 (12) 16 1 0 1
-H011 c002 m011 (5) 17 1 1 2
- 19 20 1 0 1
-H008 c011 m005 (4) 19 1 1 1
-H014 c002 m003 (10) 19 1 1 1
-H012 c004 m002 (13) 19 0 0 0
-H002 c006 m003 (6) 21 0 0 0
-H006 c003 m001 (2) 23 1 1 1
- 22 23 1 1 1
-H010 c013 m002 (7) 22 1 1 1
-H009 c006 m003 (8) 22 1 1 1
-H003 c004 m018 (9) 23 2 2 2
-H000 ancetre (14) 24 0 0 0
--------------------------------------------------------------------------
-Sum 21
-
-Tree length = 21
-Consistency index (CI) = 0.6190
-Homoplasy index (HI) = 0.3810
-CI excluding uninformative characters = 0.5789
-HI excluding uninformative characters = 0.4211
-Retention index (RI) = 0.8140
-Rescaled consistency index (RC) = 0.5039
-
- /-------- H004 c002 m009
- /--------------15
- | \-------- H013 c004 m010
- |
- /------18 /-------- H005 c004 m010
- | | /------16
- | | | \-------- H007 c015 m028
- | \------17
- /-----20 \---------------- H011 c002 m011
- | |
- | | /-------- H008 c011 m005
- | | |
- /------21 \----------------------19-------- H014 c002 m003
- | | |
- | | \-------- H012 c004 m002
- | |
- | \--------------------------------------- H002 c006 m003
- |
- /------23----------------------------------------------- H006 c003 m001
- | |
- | | /-------- H010 c013 m002
- | +-------------------------------------22
--------24 | \-------- H009 c006 m003
- | |
- | \----------------------------------------------- H003 c004 m018
- |
- \------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_24 --> node_23 13 1 1.000 1 ==> 2
- node_23 --> node_21 6 1 1.000 2 ==> 1
- 7 1 1.000 2 ==> 1
- node_21 --> node_20 8 1 1.000 2 ==> 1
- 10 1 0.500 2 ==> 1
- node_20 --> node_18 1 1 0.500 2 ==> 1
- 2 1 0.500 2 ==> 1
- node_18 --> node_15 9 1 0.333 2 --> 1
- node_15 --> H013 c004 m010 12 1 0.333 2 ==> 1
- node_17 --> node_16 11 1 0.500 2 ==> 1
- node_16 --> H007 c015 m028 9 1 0.333 2 --> 1
- node_17 --> H011 c002 m011 10 1 0.500 1 ==> 2
- node_20 --> node_19 9 1 0.333 2 --> 1
- node_19 --> H008 c011 m005 12 1 0.333 2 ==> 1
- node_19 --> H014 c002 m003 11 1 0.500 2 ==> 1
- node_23 --> H006 c003 m001 5 1 1.000 2 ==> 1
- node_23 --> node_22 3 1 1.000 2 ==> 1
- node_22 --> H010 c013 m002 4 1 1.000 2 ==> 1
- node_22 --> H009 c006 m003 12 1 0.333 2 ==> 1
- node_23 --> H003 c004 m018 1 1 0.500 2 ==> 1
- 2 1 0.500 2 ==> 1
-
-Tree number 26:
-
-Branch lengths and linkages for tree #26
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 23 root 0 0 0
- 22 23 1 1 1
- 20 22 2 2 2
- 19 20 1 1 3
- 17 19 2 2 2
- 16 17 2 0 2
-H004 c002 m009 (1) 16 0 0 0
- 15 16 1 1 1
-H005 c004 m010 (3) 15 1 1 1
-H007 c015 m028 (12) 15 0 0 0
-H013 c004 m010 (11) 16 1 1 1
-H011 c002 m011 (5) 17 0 0 2
- 18 19 2 0 2
-H008 c011 m005 (4) 18 1 1 1
-H014 c002 m003 (10) 18 1 1 1
-H012 c004 m002 (13) 18 0 0 0
-H002 c006 m003 (6) 20 0 0 0
-H006 c003 m001 (2) 22 1 1 1
- 21 22 1 1 1
-H010 c013 m002 (7) 21 1 1 1
-H009 c006 m003 (8) 21 1 1 1
-H003 c004 m018 (9) 22 2 2 2
-H000 ancetre (14) 23 0 0 0
--------------------------------------------------------------------------
-Sum 21
-
-Tree length = 21
-Consistency index (CI) = 0.6190
-Homoplasy index (HI) = 0.3810
-CI excluding uninformative characters = 0.5789
-HI excluding uninformative characters = 0.4211
-Retention index (RI) = 0.8140
-Rescaled consistency index (RC) = 0.5039
-
- /---------------- H004 c002 m009
- |
- | /-------- H005 c004 m010
- /------16------15
- | | \-------- H007 c015 m028
- | |
- /------17 \---------------- H013 c004 m010
- | |
- | \------------------------ H011 c002 m011
- /-----19
- | | /-------- H008 c011 m005
- | | |
- | \----------------------18-------- H014 c002 m003
- /------20 |
- | | \-------- H012 c004 m002
- | |
- | \--------------------------------------- H002 c006 m003
- |
- +----------------------------------------------- H006 c003 m001
- /------22
- | | /-------- H010 c013 m002
- | +-------------------------------------21
- | | \-------- H009 c006 m003
--------23 |
- | \----------------------------------------------- H003 c004 m018
- |
- \------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_23 --> node_22 13 1 1.000 1 ==> 2
- node_22 --> node_20 6 1 1.000 2 ==> 1
- 7 1 1.000 2 ==> 1
- node_20 --> node_19 8 1 1.000 2 ==> 1
- node_19 --> node_17 1 1 0.500 2 ==> 1
- 2 1 0.500 2 ==> 1
- node_17 --> node_16 9 1 0.333 2 --> 1
- 10 1 0.500 2 --> 1
- node_16 --> node_15 11 1 0.500 2 ==> 1
- node_15 --> H005 c004 m010 9 1 0.333 1 ==> 2
- node_16 --> H013 c004 m010 12 1 0.333 2 ==> 1
- node_19 --> node_18 9 1 0.333 2 --> 1
- 10 1 0.500 2 --> 1
- node_18 --> H008 c011 m005 12 1 0.333 2 ==> 1
- node_18 --> H014 c002 m003 11 1 0.500 2 ==> 1
- node_22 --> H006 c003 m001 5 1 1.000 2 ==> 1
- node_22 --> node_21 3 1 1.000 2 ==> 1
- node_21 --> H010 c013 m002 4 1 1.000 2 ==> 1
- node_21 --> H009 c006 m003 12 1 0.333 2 ==> 1
- node_22 --> H003 c004 m018 1 1 0.500 2 ==> 1
- 2 1 0.500 2 ==> 1
-
-Tree number 27:
-
-Branch lengths and linkages for tree #27
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 23 root 0 0 0
- 22 23 1 1 1
- 20 22 2 2 2
- 19 20 1 1 3
- 18 19 2 2 2
- 16 18 2 0 2
-H004 c002 m009 (1) 16 0 0 0
- 15 16 1 1 1
-H005 c004 m010 (3) 15 1 1 1
-H007 c015 m028 (12) 15 0 0 0
-H013 c004 m010 (11) 16 1 1 1
- 17 18 0 0 2
-H008 c011 m005 (4) 17 1 1 1
-H014 c002 m003 (10) 17 1 1 1
-H012 c004 m002 (13) 17 0 0 0
-H011 c002 m011 (5) 19 2 0 2
-H002 c006 m003 (6) 20 0 0 0
-H006 c003 m001 (2) 22 1 1 1
- 21 22 1 1 1
-H010 c013 m002 (7) 21 1 1 1
-H009 c006 m003 (8) 21 1 1 1
-H003 c004 m018 (9) 22 2 2 2
-H000 ancetre (14) 23 0 0 0
--------------------------------------------------------------------------
-Sum 21
-
-Tree length = 21
-Consistency index (CI) = 0.6190
-Homoplasy index (HI) = 0.3810
-CI excluding uninformative characters = 0.5789
-HI excluding uninformative characters = 0.4211
-Retention index (RI) = 0.8140
-Rescaled consistency index (RC) = 0.5039
-
- /---------------- H004 c002 m009
- |
- | /-------- H005 c004 m010
- /------16------15
- | | \-------- H007 c015 m028
- | |
- | \---------------- H013 c004 m010
- /------18
- | | /-------- H008 c011 m005
- | | |
- | \--------------17-------- H014 c002 m003
- /-----19 |
- | | \-------- H012 c004 m002
- | |
- /------20 \-------------------------------- H011 c002 m011
- | |
- | \--------------------------------------- H002 c006 m003
- |
- +----------------------------------------------- H006 c003 m001
- /------22
- | | /-------- H010 c013 m002
- | +-------------------------------------21
- | | \-------- H009 c006 m003
--------23 |
- | \----------------------------------------------- H003 c004 m018
- |
- \------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_23 --> node_22 13 1 1.000 1 ==> 2
- node_22 --> node_20 6 1 1.000 2 ==> 1
- 7 1 1.000 2 ==> 1
- node_20 --> node_19 8 1 1.000 2 ==> 1
- node_19 --> node_18 9 1 0.500 2 ==> 1
- 10 1 1.000 2 ==> 1
- node_18 --> node_16 1 1 0.333 2 --> 1
- 2 1 0.333 2 --> 1
- node_16 --> node_15 11 1 0.500 2 ==> 1
- node_15 --> H005 c004 m010 9 1 0.500 1 ==> 2
- node_16 --> H013 c004 m010 12 1 0.333 2 ==> 1
- node_17 --> H008 c011 m005 12 1 0.333 2 ==> 1
- node_17 --> H014 c002 m003 11 1 0.500 2 ==> 1
- node_19 --> H011 c002 m011 1 1 0.333 2 --> 1
- 2 1 0.333 2 --> 1
- node_22 --> H006 c003 m001 5 1 1.000 2 ==> 1
- node_22 --> node_21 3 1 1.000 2 ==> 1
- node_21 --> H010 c013 m002 4 1 1.000 2 ==> 1
- node_21 --> H009 c006 m003 12 1 0.333 2 ==> 1
- node_22 --> H003 c004 m018 1 1 0.333 2 ==> 1
- 2 1 0.333 2 ==> 1
-
-Tree number 28:
-
-Branch lengths and linkages for tree #28
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 23 root 0 0 0
- 22 23 1 1 1
- 20 22 2 2 2
- 19 20 3 3 3
- 18 19 1 1 2
- 17 18 1 1 1
- 16 17 0 0 1
-H004 c002 m009 (1) 16 0 0 0
- 15 16 2 2 2
-H008 c011 m005 (4) 15 1 1 1
-H014 c002 m003 (10) 15 1 1 1
-H012 c004 m002 (13) 15 0 0 0
-H013 c004 m010 (11) 16 1 1 1
-H007 c015 m028 (12) 17 1 0 1
-H005 c004 m010 (3) 18 1 0 1
-H011 c002 m011 (5) 19 0 0 0
-H003 c004 m018 (9) 20 0 0 0
-H006 c003 m001 (2) 22 1 1 1
-H002 c006 m003 (6) 22 2 2 2
- 21 22 1 1 1
-H010 c013 m002 (7) 21 1 1 1
-H009 c006 m003 (8) 21 1 1 1
-H000 ancetre (14) 23 0 0 0
--------------------------------------------------------------------------
-Sum 21
-
-Tree length = 21
-Consistency index (CI) = 0.6190
-Homoplasy index (HI) = 0.3810
-CI excluding uninformative characters = 0.5789
-HI excluding uninformative characters = 0.4211
-Retention index (RI) = 0.8140
-Rescaled consistency index (RC) = 0.5039
-
- /-------------- H004 c002 m009
- |
- | /------- H008 c011 m005
- | |
- /-----16-----15------- H014 c002 m003
- | | |
- | | \------- H012 c004 m002
- /-----17 |
- | | \-------------- H013 c004 m010
- | |
- /-----18 \--------------------- H007 c015 m028
- | |
- /-----19 \---------------------------- H005 c004 m010
- | |
- /-----20 \----------------------------------- H011 c002 m011
- | |
- | \------------------------------------------ H003 c004 m018
- |
- +------------------------------------------------- H006 c003 m001
- /-----22
- | +------------------------------------------------- H002 c006 m003
- | |
- | | /------- H010 c013 m002
-------23 \----------------------------------------21
- | \------- H009 c006 m003
- |
- \-------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_23 --> node_22 13 1 1.000 1 ==> 2
- node_22 --> node_20 1 1 0.500 2 ==> 1
- 2 1 0.500 2 ==> 1
- node_20 --> node_19 6 1 0.500 2 ==> 1
- 7 1 0.500 2 ==> 1
- 8 1 1.000 2 ==> 1
- node_19 --> node_18 10 1 1.000 2 ==> 1
- node_18 --> node_17 9 1 1.000 2 ==> 1
- node_16 --> node_15 1 1 0.500 1 ==> 2
- 2 1 0.500 1 ==> 2
- node_15 --> H008 c011 m005 12 1 0.333 2 ==> 1
- node_15 --> H014 c002 m003 11 1 0.333 2 ==> 1
- node_16 --> H013 c004 m010 12 1 0.333 2 ==> 1
- node_17 --> H007 c015 m028 11 1 0.333 2 --> 1
- node_18 --> H005 c004 m010 11 1 0.333 2 --> 1
- node_22 --> H006 c003 m001 5 1 1.000 2 ==> 1
- node_22 --> H002 c006 m003 6 1 0.500 2 ==> 1
- 7 1 0.500 2 ==> 1
- node_22 --> node_21 3 1 1.000 2 ==> 1
- node_21 --> H010 c013 m002 4 1 1.000 2 ==> 1
- node_21 --> H009 c006 m003 12 1 0.333 2 ==> 1
-
-Tree number 29:
-
-Branch lengths and linkages for tree #29
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 24 root 0 0 0
- 23 24 1 1 1
- 21 23 2 2 2
- 20 21 3 3 3
- 19 20 1 1 1
- 18 19 2 2 2
- 17 18 0 0 1
- 16 17 1 1 1
- 15 16 0 0 1
-H004 c002 m009 (1) 15 0 0 0
-H013 c004 m010 (11) 15 1 1 1
-H011 c002 m011 (5) 16 2 1 2
-H005 c004 m010 (3) 17 1 0 1
-H007 c015 m028 (12) 18 0 0 0
-H014 c002 m003 (10) 19 0 0 0
-H008 c011 m005 (4) 20 1 1 1
-H012 c004 m002 (13) 20 0 0 0
-H002 c006 m003 (6) 21 0 0 0
-H006 c003 m001 (2) 23 1 1 1
- 22 23 1 1 1
-H010 c013 m002 (7) 22 1 1 1
-H009 c006 m003 (8) 22 1 1 1
-H003 c004 m018 (9) 23 2 2 2
-H000 ancetre (14) 24 0 0 0
--------------------------------------------------------------------------
-Sum 21
-
-Tree length = 21
-Consistency index (CI) = 0.6190
-Homoplasy index (HI) = 0.3810
-CI excluding uninformative characters = 0.5789
-HI excluding uninformative characters = 0.4211
-Retention index (RI) = 0.8140
-Rescaled consistency index (RC) = 0.5039
-
- /------ H004 c002 m009
- /-----15
- | \------ H013 c004 m010
- /----16
- | \------------- H011 c002 m011
- /----17
- | \------------------- H005 c004 m010
- /----18
- | \------------------------- H007 c015 m028
- /-----19
- | \------------------------------- H014 c002 m003
- |
- /----20-------------------------------------- H008 c011 m005
- | |
- /----21 \-------------------------------------- H012 c004 m002
- | |
- | \-------------------------------------------- H002 c006 m003
- |
- +-------------------------------------------------- H006 c003 m001
- /-----23
- | | /------ H010 c013 m002
- | +------------------------------------------22
- | | \------ H009 c006 m003
------24 |
- | \-------------------------------------------------- H003 c004 m018
- |
- \--------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_24 --> node_23 13 1 1.000 1 ==> 2
- node_23 --> node_21 6 1 1.000 2 ==> 1
- 7 1 1.000 2 ==> 1
- node_21 --> node_20 8 1 1.000 2 ==> 1
- 9 1 0.333 2 ==> 1
- 10 1 0.500 2 ==> 1
- node_20 --> node_19 11 1 0.500 2 ==> 1
- node_19 --> node_18 1 1 0.500 2 ==> 1
- 2 1 0.500 2 ==> 1
- node_17 --> node_16 11 1 0.500 1 ==> 2
- node_15 --> H013 c004 m010 12 1 0.333 2 ==> 1
- node_16 --> H011 c002 m011 9 1 0.333 1 --> 2
- 10 1 0.500 1 ==> 2
- node_17 --> H005 c004 m010 9 1 0.333 1 --> 2
- node_20 --> H008 c011 m005 12 1 0.333 2 ==> 1
- node_23 --> H006 c003 m001 5 1 1.000 2 ==> 1
- node_23 --> node_22 3 1 1.000 2 ==> 1
- node_22 --> H010 c013 m002 4 1 1.000 2 ==> 1
- node_22 --> H009 c006 m003 12 1 0.333 2 ==> 1
- node_23 --> H003 c004 m018 1 1 0.500 2 ==> 1
- 2 1 0.500 2 ==> 1
-
-Tree number 30:
-
-Branch lengths and linkages for tree #30
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 23 root 0 0 0
- 22 23 1 1 1
- 20 22 2 2 2
- 19 20 3 3 3
- 18 19 0 0 1
- 17 18 2 2 2
- 16 17 0 0 1
-H004 c002 m009 (1) 16 0 0 0
- 15 16 1 1 1
-H005 c004 m010 (3) 15 1 1 1
-H011 c002 m011 (5) 15 1 1 1
-H013 c004 m010 (11) 16 1 1 1
-H007 c015 m028 (12) 17 1 0 1
-H014 c002 m003 (10) 18 1 0 1
-H008 c011 m005 (4) 19 1 1 1
-H012 c004 m002 (13) 19 0 0 0
-H002 c006 m003 (6) 20 0 0 0
-H006 c003 m001 (2) 22 1 1 1
- 21 22 1 1 1
-H010 c013 m002 (7) 21 1 1 1
-H009 c006 m003 (8) 21 1 1 1
-H003 c004 m018 (9) 22 2 2 2
-H000 ancetre (14) 23 0 0 0
--------------------------------------------------------------------------
-Sum 21
-
-Tree length = 21
-Consistency index (CI) = 0.6190
-Homoplasy index (HI) = 0.3810
-CI excluding uninformative characters = 0.5789
-HI excluding uninformative characters = 0.4211
-Retention index (RI) = 0.8140
-Rescaled consistency index (RC) = 0.5039
-
- /-------------- H004 c002 m009
- |
- | /------- H005 c004 m010
- /-----16-----15
- | | \------- H011 c002 m011
- | |
- /-----17 \-------------- H013 c004 m010
- | |
- /-----18 \--------------------- H007 c015 m028
- | |
- | \---------------------------- H014 c002 m003
- /-----19
- | +----------------------------------- H008 c011 m005
- | |
- /-----20 \----------------------------------- H012 c004 m002
- | |
- | \------------------------------------------ H002 c006 m003
- |
- +------------------------------------------------- H006 c003 m001
- /-----22
- | | /------- H010 c013 m002
- | +----------------------------------------21
- | | \------- H009 c006 m003
-------23 |
- | \------------------------------------------------- H003 c004 m018
- |
- \-------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_23 --> node_22 13 1 1.000 1 ==> 2
- node_22 --> node_20 6 1 1.000 2 ==> 1
- 7 1 1.000 2 ==> 1
- node_20 --> node_19 8 1 1.000 2 ==> 1
- 9 1 0.500 2 ==> 1
- 10 1 0.500 2 ==> 1
- node_18 --> node_17 1 1 0.500 2 ==> 1
- 2 1 0.500 2 ==> 1
- node_16 --> node_15 9 1 0.500 1 ==> 2
- node_15 --> H005 c004 m010 11 1 0.333 2 ==> 1
- node_15 --> H011 c002 m011 10 1 0.500 1 ==> 2
- node_16 --> H013 c004 m010 12 1 0.333 2 ==> 1
- node_17 --> H007 c015 m028 11 1 0.333 2 --> 1
- node_18 --> H014 c002 m003 11 1 0.333 2 --> 1
- node_19 --> H008 c011 m005 12 1 0.333 2 ==> 1
- node_22 --> H006 c003 m001 5 1 1.000 2 ==> 1
- node_22 --> node_21 3 1 1.000 2 ==> 1
- node_21 --> H010 c013 m002 4 1 1.000 2 ==> 1
- node_21 --> H009 c006 m003 12 1 0.333 2 ==> 1
- node_22 --> H003 c004 m018 1 1 0.500 2 ==> 1
- 2 1 0.500 2 ==> 1
-
-Tree number 31:
-
-Branch lengths and linkages for tree #31
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 23 root 0 0 0
- 22 23 1 1 1
- 20 22 2 2 2
- 19 20 3 3 3
- 18 19 0 0 1
- 17 18 2 2 2
- 15 17 0 0 1
-H004 c002 m009 (1) 15 0 0 0
-H011 c002 m011 (5) 15 2 2 2
-H013 c004 m010 (11) 15 1 1 1
- 16 17 1 0 1
-H005 c004 m010 (3) 16 1 1 1
-H007 c015 m028 (12) 16 0 0 0
-H014 c002 m003 (10) 18 1 0 1
-H008 c011 m005 (4) 19 1 1 1
-H012 c004 m002 (13) 19 0 0 0
-H002 c006 m003 (6) 20 0 0 0
-H006 c003 m001 (2) 22 1 1 1
- 21 22 1 1 1
-H010 c013 m002 (7) 21 1 1 1
-H009 c006 m003 (8) 21 1 1 1
-H003 c004 m018 (9) 22 2 2 2
-H000 ancetre (14) 23 0 0 0
--------------------------------------------------------------------------
-Sum 21
-
-Tree length = 21
-Consistency index (CI) = 0.6190
-Homoplasy index (HI) = 0.3810
-CI excluding uninformative characters = 0.5789
-HI excluding uninformative characters = 0.4211
-Retention index (RI) = 0.8140
-Rescaled consistency index (RC) = 0.5039
-
- /-------- H004 c002 m009
- |
- /------15-------- H011 c002 m011
- | |
- | \-------- H013 c004 m010
- /------17
- | | /-------- H005 c004 m010
- | \------16
- /------18 \-------- H007 c015 m028
- | |
- | \------------------------ H014 c002 m003
- /-----19
- | +-------------------------------- H008 c011 m005
- | |
- /------20 \-------------------------------- H012 c004 m002
- | |
- | \--------------------------------------- H002 c006 m003
- |
- +----------------------------------------------- H006 c003 m001
- /------22
- | | /-------- H010 c013 m002
- | +-------------------------------------21
- | | \-------- H009 c006 m003
--------23 |
- | \----------------------------------------------- H003 c004 m018
- |
- \------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_23 --> node_22 13 1 1.000 1 ==> 2
- node_22 --> node_20 6 1 1.000 2 ==> 1
- 7 1 1.000 2 ==> 1
- node_20 --> node_19 8 1 1.000 2 ==> 1
- 9 1 0.333 2 ==> 1
- 10 1 0.500 2 ==> 1
- node_18 --> node_17 1 1 0.500 2 ==> 1
- 2 1 0.500 2 ==> 1
- node_15 --> H011 c002 m011 9 1 0.333 1 ==> 2
- 10 1 0.500 1 ==> 2
- node_15 --> H013 c004 m010 12 1 0.333 2 ==> 1
- node_17 --> node_16 11 1 0.500 2 --> 1
- node_16 --> H005 c004 m010 9 1 0.333 1 ==> 2
- node_18 --> H014 c002 m003 11 1 0.500 2 --> 1
- node_19 --> H008 c011 m005 12 1 0.333 2 ==> 1
- node_22 --> H006 c003 m001 5 1 1.000 2 ==> 1
- node_22 --> node_21 3 1 1.000 2 ==> 1
- node_21 --> H010 c013 m002 4 1 1.000 2 ==> 1
- node_21 --> H009 c006 m003 12 1 0.333 2 ==> 1
- node_22 --> H003 c004 m018 1 1 0.500 2 ==> 1
- 2 1 0.500 2 ==> 1
-
-Tree number 32:
-
-Branch lengths and linkages for tree #32
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 24 root 0 0 0
- 23 24 1 1 1
- 21 23 2 2 2
- 20 21 1 1 1
- 19 20 2 2 2
- 18 19 0 0 1
- 17 18 2 2 2
- 15 17 0 0 1
-H004 c002 m009 (1) 15 0 0 0
-H013 c004 m010 (11) 15 1 1 1
- 16 17 1 0 1
-H005 c004 m010 (3) 16 1 1 1
-H007 c015 m028 (12) 16 0 0 0
-H014 c002 m003 (10) 18 1 0 1
-H008 c011 m005 (4) 19 1 1 1
-H012 c004 m002 (13) 19 0 0 0
-H011 c002 m011 (5) 20 2 2 2
-H002 c006 m003 (6) 21 0 0 0
-H006 c003 m001 (2) 23 1 1 1
- 22 23 1 1 1
-H010 c013 m002 (7) 22 1 1 1
-H009 c006 m003 (8) 22 1 1 1
-H003 c004 m018 (9) 23 2 2 2
-H000 ancetre (14) 24 0 0 0
--------------------------------------------------------------------------
-Sum 21
-
-Tree length = 21
-Consistency index (CI) = 0.6190
-Homoplasy index (HI) = 0.3810
-CI excluding uninformative characters = 0.5789
-HI excluding uninformative characters = 0.4211
-Retention index (RI) = 0.8140
-Rescaled consistency index (RC) = 0.5039
-
- /------- H004 c002 m009
- /-----15
- | \------- H013 c004 m010
- /-----17
- | | /------- H005 c004 m010
- | \-----16
- /-----18 \------- H007 c015 m028
- | |
- | \--------------------- H014 c002 m003
- /-----19
- | +---------------------------- H008 c011 m005
- | |
- /-----20 \---------------------------- H012 c004 m002
- | |
- /-----21 \----------------------------------- H011 c002 m011
- | |
- | \------------------------------------------ H002 c006 m003
- |
- +------------------------------------------------- H006 c003 m001
- /-----23
- | | /------- H010 c013 m002
- | +----------------------------------------22
- | | \------- H009 c006 m003
-------24 |
- | \------------------------------------------------- H003 c004 m018
- |
- \-------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_24 --> node_23 13 1 1.000 1 ==> 2
- node_23 --> node_21 6 1 1.000 2 ==> 1
- 7 1 1.000 2 ==> 1
- node_21 --> node_20 8 1 1.000 2 ==> 1
- node_20 --> node_19 9 1 0.500 2 ==> 1
- 10 1 1.000 2 ==> 1
- node_18 --> node_17 1 1 0.333 2 ==> 1
- 2 1 0.333 2 ==> 1
- node_15 --> H013 c004 m010 12 1 0.333 2 ==> 1
- node_17 --> node_16 11 1 0.500 2 --> 1
- node_16 --> H005 c004 m010 9 1 0.500 1 ==> 2
- node_18 --> H014 c002 m003 11 1 0.500 2 --> 1
- node_19 --> H008 c011 m005 12 1 0.333 2 ==> 1
- node_20 --> H011 c002 m011 1 1 0.333 2 ==> 1
- 2 1 0.333 2 ==> 1
- node_23 --> H006 c003 m001 5 1 1.000 2 ==> 1
- node_23 --> node_22 3 1 1.000 2 ==> 1
- node_22 --> H010 c013 m002 4 1 1.000 2 ==> 1
- node_22 --> H009 c006 m003 12 1 0.333 2 ==> 1
- node_23 --> H003 c004 m018 1 1 0.333 2 ==> 1
- 2 1 0.333 2 ==> 1
-
-Tree number 33:
-
-Branch lengths and linkages for tree #33
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 25 root 0 0 0
- 24 25 1 1 1
- 22 24 2 2 2
- 21 22 3 3 3
- 20 21 1 1 2
- 19 20 1 1 1
- 18 19 0 0 1
- 15 18 0 0 1
-H004 c002 m009 (1) 15 0 0 0
-H013 c004 m010 (11) 15 1 1 1
- 17 18 2 2 2
- 16 17 0 0 1
-H008 c011 m005 (4) 16 1 1 1
-H012 c004 m002 (13) 16 0 0 0
-H014 c002 m003 (10) 17 1 0 1
-H007 c015 m028 (12) 19 1 0 1
-H005 c004 m010 (3) 20 1 0 1
-H011 c002 m011 (5) 21 0 0 0
-H002 c006 m003 (6) 22 0 0 0
-H006 c003 m001 (2) 24 1 1 1
- 23 24 1 1 1
-H010 c013 m002 (7) 23 1 1 1
-H009 c006 m003 (8) 23 1 1 1
-H003 c004 m018 (9) 24 2 2 2
-H000 ancetre (14) 25 0 0 0
--------------------------------------------------------------------------
-Sum 21
-
-Tree length = 21
-Consistency index (CI) = 0.6190
-Homoplasy index (HI) = 0.3810
-CI excluding uninformative characters = 0.5789
-HI excluding uninformative characters = 0.4211
-Retention index (RI) = 0.8140
-Rescaled consistency index (RC) = 0.5039
-
- /------ H004 c002 m009
- /-----------15
- | \------ H013 c004 m010
- |
- /----18 /------ H008 c011 m005
- | | /-----16
- | | | \------ H012 c004 m002
- /----19 \----17
- | | \------------- H014 c002 m003
- | |
- /-----20 \------------------------- H007 c015 m028
- | |
- /----21 \------------------------------- H005 c004 m010
- | |
- /----22 \-------------------------------------- H011 c002 m011
- | |
- | \-------------------------------------------- H002 c006 m003
- |
- +-------------------------------------------------- H006 c003 m001
- /-----24
- | | /------ H010 c013 m002
- | +------------------------------------------23
- | | \------ H009 c006 m003
------25 |
- | \-------------------------------------------------- H003 c004 m018
- |
- \--------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_25 --> node_24 13 1 1.000 1 ==> 2
- node_24 --> node_22 6 1 1.000 2 ==> 1
- 7 1 1.000 2 ==> 1
- node_22 --> node_21 1 1 0.333 2 ==> 1
- 2 1 0.333 2 ==> 1
- 8 1 1.000 2 ==> 1
- node_21 --> node_20 10 1 1.000 2 ==> 1
- node_20 --> node_19 9 1 1.000 2 ==> 1
- node_15 --> H013 c004 m010 12 1 0.333 2 ==> 1
- node_18 --> node_17 1 1 0.333 1 ==> 2
- 2 1 0.333 1 ==> 2
- node_16 --> H008 c011 m005 12 1 0.333 2 ==> 1
- node_17 --> H014 c002 m003 11 1 0.333 2 --> 1
- node_19 --> H007 c015 m028 11 1 0.333 2 --> 1
- node_20 --> H005 c004 m010 11 1 0.333 2 --> 1
- node_24 --> H006 c003 m001 5 1 1.000 2 ==> 1
- node_24 --> node_23 3 1 1.000 2 ==> 1
- node_23 --> H010 c013 m002 4 1 1.000 2 ==> 1
- node_23 --> H009 c006 m003 12 1 0.333 2 ==> 1
- node_24 --> H003 c004 m018 1 1 0.333 2 ==> 1
- 2 1 0.333 2 ==> 1
-
-Tree number 34:
-
-Branch lengths and linkages for tree #34
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 25 root 0 0 0
- 24 25 1 1 1
- 22 24 2 2 2
- 21 22 3 3 3
- 20 21 1 1 2
- 19 20 1 1 1
- 18 19 0 0 1
- 15 18 0 0 1
-H004 c002 m009 (1) 15 0 0 0
-H013 c004 m010 (11) 15 1 1 1
- 17 18 2 2 2
- 16 17 0 0 1
-H008 c011 m005 (4) 16 1 1 1
-H012 c004 m002 (13) 16 0 0 0
-H014 c002 m003 (10) 17 1 0 1
-H007 c015 m028 (12) 19 1 0 1
-H005 c004 m010 (3) 20 1 0 1
-H011 c002 m011 (5) 21 0 0 0
-H003 c004 m018 (9) 22 0 0 0
-H006 c003 m001 (2) 24 1 1 1
-H002 c006 m003 (6) 24 2 2 2
- 23 24 1 1 1
-H010 c013 m002 (7) 23 1 1 1
-H009 c006 m003 (8) 23 1 1 1
-H000 ancetre (14) 25 0 0 0
--------------------------------------------------------------------------
-Sum 21
-
-Tree length = 21
-Consistency index (CI) = 0.6190
-Homoplasy index (HI) = 0.3810
-CI excluding uninformative characters = 0.5789
-HI excluding uninformative characters = 0.4211
-Retention index (RI) = 0.8140
-Rescaled consistency index (RC) = 0.5039
-
- /------ H004 c002 m009
- /-----------15
- | \------ H013 c004 m010
- |
- /----18 /------ H008 c011 m005
- | | /-----16
- | | | \------ H012 c004 m002
- /----19 \----17
- | | \------------- H014 c002 m003
- | |
- /-----20 \------------------------- H007 c015 m028
- | |
- /----21 \------------------------------- H005 c004 m010
- | |
- /----22 \-------------------------------------- H011 c002 m011
- | |
- | \-------------------------------------------- H003 c004 m018
- |
- +-------------------------------------------------- H006 c003 m001
- /-----24
- | +-------------------------------------------------- H002 c006 m003
- | |
- | | /------ H010 c013 m002
------25 \------------------------------------------23
- | \------ H009 c006 m003
- |
- \--------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_25 --> node_24 13 1 1.000 1 ==> 2
- node_24 --> node_22 1 1 0.500 2 ==> 1
- 2 1 0.500 2 ==> 1
- node_22 --> node_21 6 1 0.500 2 ==> 1
- 7 1 0.500 2 ==> 1
- 8 1 1.000 2 ==> 1
- node_21 --> node_20 10 1 1.000 2 ==> 1
- node_20 --> node_19 9 1 1.000 2 ==> 1
- node_15 --> H013 c004 m010 12 1 0.333 2 ==> 1
- node_18 --> node_17 1 1 0.500 1 ==> 2
- 2 1 0.500 1 ==> 2
- node_16 --> H008 c011 m005 12 1 0.333 2 ==> 1
- node_17 --> H014 c002 m003 11 1 0.333 2 --> 1
- node_19 --> H007 c015 m028 11 1 0.333 2 --> 1
- node_20 --> H005 c004 m010 11 1 0.333 2 --> 1
- node_24 --> H006 c003 m001 5 1 1.000 2 ==> 1
- node_24 --> H002 c006 m003 6 1 0.500 2 ==> 1
- 7 1 0.500 2 ==> 1
- node_24 --> node_23 3 1 1.000 2 ==> 1
- node_23 --> H010 c013 m002 4 1 1.000 2 ==> 1
- node_23 --> H009 c006 m003 12 1 0.333 2 ==> 1
-
-Tree number 35:
-
-Branch lengths and linkages for tree #35
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 23 root 0 0 0
- 22 23 1 1 1
- 20 22 2 2 2
- 19 20 3 3 3
- 18 19 0 0 1
- 17 18 2 2 2
- 16 17 0 0 1
-H004 c002 m009 (1) 16 0 0 0
- 15 16 1 1 1
-H005 c004 m010 (3) 15 1 1 1
-H011 c002 m011 (5) 15 1 1 1
-H007 c015 m028 (12) 16 1 1 1
-H013 c004 m010 (11) 17 1 0 1
-H008 c011 m005 (4) 18 1 0 1
-H014 c002 m003 (10) 19 1 1 1
-H012 c004 m002 (13) 19 0 0 0
-H002 c006 m003 (6) 20 0 0 0
-H006 c003 m001 (2) 22 1 1 1
- 21 22 1 1 1
-H010 c013 m002 (7) 21 1 1 1
-H009 c006 m003 (8) 21 1 1 1
-H003 c004 m018 (9) 22 2 2 2
-H000 ancetre (14) 23 0 0 0
--------------------------------------------------------------------------
-Sum 21
-
-Tree length = 21
-Consistency index (CI) = 0.6190
-Homoplasy index (HI) = 0.3810
-CI excluding uninformative characters = 0.5789
-HI excluding uninformative characters = 0.4211
-Retention index (RI) = 0.8140
-Rescaled consistency index (RC) = 0.5039
-
- /-------------- H004 c002 m009
- |
- | /------- H005 c004 m010
- /-----16-----15
- | | \------- H011 c002 m011
- | |
- /-----17 \-------------- H007 c015 m028
- | |
- /-----18 \--------------------- H013 c004 m010
- | |
- | \---------------------------- H008 c011 m005
- /-----19
- | +----------------------------------- H014 c002 m003
- | |
- /-----20 \----------------------------------- H012 c004 m002
- | |
- | \------------------------------------------ H002 c006 m003
- |
- +------------------------------------------------- H006 c003 m001
- /-----22
- | | /------- H010 c013 m002
- | +----------------------------------------21
- | | \------- H009 c006 m003
-------23 |
- | \------------------------------------------------- H003 c004 m018
- |
- \-------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_23 --> node_22 13 1 1.000 1 ==> 2
- node_22 --> node_20 6 1 1.000 2 ==> 1
- 7 1 1.000 2 ==> 1
- node_20 --> node_19 8 1 1.000 2 ==> 1
- 9 1 0.500 2 ==> 1
- 10 1 0.500 2 ==> 1
- node_18 --> node_17 1 1 0.500 2 ==> 1
- 2 1 0.500 2 ==> 1
- node_16 --> node_15 9 1 0.500 1 ==> 2
- node_15 --> H005 c004 m010 11 1 0.333 2 ==> 1
- node_15 --> H011 c002 m011 10 1 0.500 1 ==> 2
- node_16 --> H007 c015 m028 11 1 0.333 2 ==> 1
- node_17 --> H013 c004 m010 12 1 0.333 2 --> 1
- node_18 --> H008 c011 m005 12 1 0.333 2 --> 1
- node_19 --> H014 c002 m003 11 1 0.333 2 ==> 1
- node_22 --> H006 c003 m001 5 1 1.000 2 ==> 1
- node_22 --> node_21 3 1 1.000 2 ==> 1
- node_21 --> H010 c013 m002 4 1 1.000 2 ==> 1
- node_21 --> H009 c006 m003 12 1 0.333 2 ==> 1
- node_22 --> H003 c004 m018 1 1 0.500 2 ==> 1
- 2 1 0.500 2 ==> 1
-
-Tree number 36:
-
-Branch lengths and linkages for tree #36
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 23 root 0 0 0
- 22 23 1 1 1
- 20 22 2 2 2
- 19 20 2 2 3
- 17 19 2 2 2
- 15 17 1 0 1
-H004 c002 m009 (1) 15 0 0 0
-H013 c004 m010 (11) 15 1 1 1
- 16 17 1 1 1
-H005 c004 m010 (3) 16 0 0 1
-H007 c015 m028 (12) 16 1 0 1
-H011 c002 m011 (5) 17 1 1 2
- 18 19 1 0 1
-H008 c011 m005 (4) 18 1 1 1
-H014 c002 m003 (10) 18 1 1 1
-H012 c004 m002 (13) 18 0 0 0
-H002 c006 m003 (6) 20 0 0 0
-H006 c003 m001 (2) 22 1 1 1
- 21 22 1 1 1
-H010 c013 m002 (7) 21 1 1 1
-H009 c006 m003 (8) 21 1 1 1
-H003 c004 m018 (9) 22 2 2 2
-H000 ancetre (14) 23 0 0 0
--------------------------------------------------------------------------
-Sum 21
-
-Tree length = 21
-Consistency index (CI) = 0.6190
-Homoplasy index (HI) = 0.3810
-CI excluding uninformative characters = 0.5789
-HI excluding uninformative characters = 0.4211
-Retention index (RI) = 0.8140
-Rescaled consistency index (RC) = 0.5039
-
- /--------- H004 c002 m009
- /-------15
- | \--------- H013 c004 m010
- |
- | /--------- H005 c004 m010
- /-------17-------16
- | | \--------- H007 c015 m028
- | |
- | \------------------ H011 c002 m011
- /-------19
- | | /--------- H008 c011 m005
- | | |
- | \----------------18--------- H014 c002 m003
- /-------20 |
- | | \--------- H012 c004 m002
- | |
- | \------------------------------------ H002 c006 m003
- |
- +--------------------------------------------- H006 c003 m001
- /-------22
- | | /--------- H010 c013 m002
- | +----------------------------------21
- | | \--------- H009 c006 m003
---------23 |
- | \--------------------------------------------- H003 c004 m018
- |
- \------------------------------------------------------ H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_23 --> node_22 13 1 1.000 1 ==> 2
- node_22 --> node_20 6 1 1.000 2 ==> 1
- 7 1 1.000 2 ==> 1
- node_20 --> node_19 8 1 1.000 2 ==> 1
- 10 1 0.500 2 ==> 1
- node_19 --> node_17 1 1 0.500 2 ==> 1
- 2 1 0.500 2 ==> 1
- node_17 --> node_15 9 1 0.333 2 --> 1
- node_15 --> H013 c004 m010 12 1 0.333 2 ==> 1
- node_17 --> node_16 11 1 0.500 2 ==> 1
- node_16 --> H007 c015 m028 9 1 0.333 2 --> 1
- node_17 --> H011 c002 m011 10 1 0.500 1 ==> 2
- node_19 --> node_18 9 1 0.333 2 --> 1
- node_18 --> H008 c011 m005 12 1 0.333 2 ==> 1
- node_18 --> H014 c002 m003 11 1 0.500 2 ==> 1
- node_22 --> H006 c003 m001 5 1 1.000 2 ==> 1
- node_22 --> node_21 3 1 1.000 2 ==> 1
- node_21 --> H010 c013 m002 4 1 1.000 2 ==> 1
- node_21 --> H009 c006 m003 12 1 0.333 2 ==> 1
- node_22 --> H003 c004 m018 1 1 0.500 2 ==> 1
- 2 1 0.500 2 ==> 1
-
-Tree number 37:
-
-Branch lengths and linkages for tree #37
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 22 root 0 0 0
- 21 22 1 1 1
- 19 21 2 2 2
- 18 19 1 1 1
- 17 18 2 2 2
- 16 17 2 2 2
-H004 c002 m009 (1) 16 0 0 0
- 15 16 1 1 1
-H005 c004 m010 (3) 15 1 1 1
-H007 c015 m028 (12) 15 0 0 0
-H013 c004 m010 (11) 16 1 1 1
-H008 c011 m005 (4) 17 1 1 1
-H014 c002 m003 (10) 17 1 1 1
-H012 c004 m002 (13) 17 0 0 0
-H011 c002 m011 (5) 18 2 2 2
-H002 c006 m003 (6) 19 0 0 0
-H006 c003 m001 (2) 21 1 1 1
- 20 21 1 1 1
-H010 c013 m002 (7) 20 1 1 1
-H009 c006 m003 (8) 20 1 1 1
-H003 c004 m018 (9) 21 2 2 2
-H000 ancetre (14) 22 0 0 0
--------------------------------------------------------------------------
-Sum 21
-
-Tree length = 21
-Consistency index (CI) = 0.6190
-Homoplasy index (HI) = 0.3810
-CI excluding uninformative characters = 0.5789
-HI excluding uninformative characters = 0.4211
-Retention index (RI) = 0.8140
-Rescaled consistency index (RC) = 0.5039
-
- /---------------- H004 c002 m009
- |
- | /-------- H005 c004 m010
- /------16------15
- | | \-------- H007 c015 m028
- | |
- | \---------------- H013 c004 m010
- |
- /------17------------------------ H008 c011 m005
- | |
- | +------------------------ H014 c002 m003
- /-----18 |
- | | \------------------------ H012 c004 m002
- | |
- /------19 \-------------------------------- H011 c002 m011
- | |
- | \--------------------------------------- H002 c006 m003
- |
- +----------------------------------------------- H006 c003 m001
- /------21
- | | /-------- H010 c013 m002
- | +-------------------------------------20
- | | \-------- H009 c006 m003
--------22 |
- | \----------------------------------------------- H003 c004 m018
- |
- \------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_22 --> node_21 13 1 1.000 1 ==> 2
- node_21 --> node_19 6 1 1.000 2 ==> 1
- 7 1 1.000 2 ==> 1
- node_19 --> node_18 8 1 1.000 2 ==> 1
- node_18 --> node_17 9 1 0.500 2 ==> 1
- 10 1 1.000 2 ==> 1
- node_17 --> node_16 1 1 0.333 2 ==> 1
- 2 1 0.333 2 ==> 1
- node_16 --> node_15 11 1 0.500 2 ==> 1
- node_15 --> H005 c004 m010 9 1 0.500 1 ==> 2
- node_16 --> H013 c004 m010 12 1 0.333 2 ==> 1
- node_17 --> H008 c011 m005 12 1 0.333 2 ==> 1
- node_17 --> H014 c002 m003 11 1 0.500 2 ==> 1
- node_18 --> H011 c002 m011 1 1 0.333 2 ==> 1
- 2 1 0.333 2 ==> 1
- node_21 --> H006 c003 m001 5 1 1.000 2 ==> 1
- node_21 --> node_20 3 1 1.000 2 ==> 1
- node_20 --> H010 c013 m002 4 1 1.000 2 ==> 1
- node_20 --> H009 c006 m003 12 1 0.333 2 ==> 1
- node_21 --> H003 c004 m018 1 1 0.333 2 ==> 1
- 2 1 0.333 2 ==> 1
-
-Tree number 38:
-
-Branch lengths and linkages for tree #38
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 23 root 0 0 0
- 22 23 1 1 1
- 20 22 2 2 2
- 19 20 1 1 1
- 18 19 2 2 2
- 17 18 1 1 1
- 16 17 2 2 2
- 15 16 1 1 1
-H004 c002 m009 (1) 15 0 0 0
-H013 c004 m010 (11) 15 1 1 1
-H005 c004 m010 (3) 16 1 1 1
-H007 c015 m028 (12) 16 0 0 0
-H014 c002 m003 (10) 17 0 0 0
-H008 c011 m005 (4) 18 1 1 1
-H012 c004 m002 (13) 18 0 0 0
-H011 c002 m011 (5) 19 2 2 2
-H002 c006 m003 (6) 20 0 0 0
-H006 c003 m001 (2) 22 1 1 1
- 21 22 1 1 1
-H010 c013 m002 (7) 21 1 1 1
-H009 c006 m003 (8) 21 1 1 1
-H003 c004 m018 (9) 22 2 2 2
-H000 ancetre (14) 23 0 0 0
--------------------------------------------------------------------------
-Sum 21
-
-Tree length = 21
-Consistency index (CI) = 0.6190
-Homoplasy index (HI) = 0.3810
-CI excluding uninformative characters = 0.5789
-HI excluding uninformative characters = 0.4211
-Retention index (RI) = 0.8140
-Rescaled consistency index (RC) = 0.5039
-
- /------- H004 c002 m009
- /-----15
- | \------- H013 c004 m010
- |
- /-----16-------------- H005 c004 m010
- | |
- /-----17 \-------------- H007 c015 m028
- | |
- | \--------------------- H014 c002 m003
- /-----18
- | +---------------------------- H008 c011 m005
- | |
- /-----19 \---------------------------- H012 c004 m002
- | |
- /-----20 \----------------------------------- H011 c002 m011
- | |
- | \------------------------------------------ H002 c006 m003
- |
- +------------------------------------------------- H006 c003 m001
- /-----22
- | | /------- H010 c013 m002
- | +----------------------------------------21
- | | \------- H009 c006 m003
-------23 |
- | \------------------------------------------------- H003 c004 m018
- |
- \-------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_23 --> node_22 13 1 1.000 1 ==> 2
- node_22 --> node_20 6 1 1.000 2 ==> 1
- 7 1 1.000 2 ==> 1
- node_20 --> node_19 8 1 1.000 2 ==> 1
- node_19 --> node_18 9 1 0.500 2 ==> 1
- 10 1 1.000 2 ==> 1
- node_18 --> node_17 11 1 0.500 2 ==> 1
- node_17 --> node_16 1 1 0.333 2 ==> 1
- 2 1 0.333 2 ==> 1
- node_16 --> node_15 11 1 0.500 1 ==> 2
- node_15 --> H013 c004 m010 12 1 0.333 2 ==> 1
- node_16 --> H005 c004 m010 9 1 0.500 1 ==> 2
- node_18 --> H008 c011 m005 12 1 0.333 2 ==> 1
- node_19 --> H011 c002 m011 1 1 0.333 2 ==> 1
- 2 1 0.333 2 ==> 1
- node_22 --> H006 c003 m001 5 1 1.000 2 ==> 1
- node_22 --> node_21 3 1 1.000 2 ==> 1
- node_21 --> H010 c013 m002 4 1 1.000 2 ==> 1
- node_21 --> H009 c006 m003 12 1 0.333 2 ==> 1
- node_22 --> H003 c004 m018 1 1 0.333 2 ==> 1
- 2 1 0.333 2 ==> 1
-
-Tree number 39:
-
-Branch lengths and linkages for tree #39
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 24 root 0 0 0
- 23 24 1 1 1
- 21 23 2 2 2
- 20 21 1 1 1
- 19 20 2 2 2
- 18 19 0 0 1
- 17 18 2 2 2
- 16 17 0 0 1
-H004 c002 m009 (1) 16 0 0 0
- 15 16 1 1 1
-H005 c004 m010 (3) 15 1 1 1
-H007 c015 m028 (12) 15 0 0 0
-H013 c004 m010 (11) 17 1 0 1
-H008 c011 m005 (4) 18 1 0 1
-H014 c002 m003 (10) 19 1 1 1
-H012 c004 m002 (13) 19 0 0 0
-H011 c002 m011 (5) 20 2 2 2
-H002 c006 m003 (6) 21 0 0 0
-H006 c003 m001 (2) 23 1 1 1
- 22 23 1 1 1
-H010 c013 m002 (7) 22 1 1 1
-H009 c006 m003 (8) 22 1 1 1
-H003 c004 m018 (9) 23 2 2 2
-H000 ancetre (14) 24 0 0 0
--------------------------------------------------------------------------
-Sum 21
-
-Tree length = 21
-Consistency index (CI) = 0.6190
-Homoplasy index (HI) = 0.3810
-CI excluding uninformative characters = 0.5789
-HI excluding uninformative characters = 0.4211
-Retention index (RI) = 0.8140
-Rescaled consistency index (RC) = 0.5039
-
- /------------- H004 c002 m009
- |
- /----16 /------ H005 c004 m010
- | \-----15
- /----17 \------ H007 c015 m028
- | |
- /----18 \------------------- H013 c004 m010
- | |
- | \------------------------- H008 c011 m005
- /-----19
- | +------------------------------- H014 c002 m003
- | |
- /----20 \------------------------------- H012 c004 m002
- | |
- /----21 \-------------------------------------- H011 c002 m011
- | |
- | \-------------------------------------------- H002 c006 m003
- |
- +-------------------------------------------------- H006 c003 m001
- /-----23
- | | /------ H010 c013 m002
- | +------------------------------------------22
- | | \------ H009 c006 m003
------24 |
- | \-------------------------------------------------- H003 c004 m018
- |
- \--------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_24 --> node_23 13 1 1.000 1 ==> 2
- node_23 --> node_21 6 1 1.000 2 ==> 1
- 7 1 1.000 2 ==> 1
- node_21 --> node_20 8 1 1.000 2 ==> 1
- node_20 --> node_19 9 1 0.500 2 ==> 1
- 10 1 1.000 2 ==> 1
- node_18 --> node_17 1 1 0.333 2 ==> 1
- 2 1 0.333 2 ==> 1
- node_16 --> node_15 11 1 0.500 2 ==> 1
- node_15 --> H005 c004 m010 9 1 0.500 1 ==> 2
- node_17 --> H013 c004 m010 12 1 0.333 2 --> 1
- node_18 --> H008 c011 m005 12 1 0.333 2 --> 1
- node_19 --> H014 c002 m003 11 1 0.500 2 ==> 1
- node_20 --> H011 c002 m011 1 1 0.333 2 ==> 1
- 2 1 0.333 2 ==> 1
- node_23 --> H006 c003 m001 5 1 1.000 2 ==> 1
- node_23 --> node_22 3 1 1.000 2 ==> 1
- node_22 --> H010 c013 m002 4 1 1.000 2 ==> 1
- node_22 --> H009 c006 m003 12 1 0.333 2 ==> 1
- node_23 --> H003 c004 m018 1 1 0.333 2 ==> 1
- 2 1 0.333 2 ==> 1
-
-Tree number 40:
-
-Branch lengths and linkages for tree #40
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 24 root 0 0 0
- 23 24 1 1 1
- 21 23 2 2 2
- 20 21 3 3 3
- 19 20 1 1 2
- 18 19 1 1 1
- 15 18 0 0 1
-H004 c002 m009 (1) 15 0 0 0
-H013 c004 m010 (11) 15 1 1 1
- 17 18 2 2 2
- 16 17 0 0 1
-H008 c011 m005 (4) 16 1 1 1
-H012 c004 m002 (13) 16 0 0 0
-H014 c002 m003 (10) 17 1 0 1
-H007 c015 m028 (12) 18 1 0 1
-H005 c004 m010 (3) 19 1 0 1
-H011 c002 m011 (5) 20 0 0 0
-H002 c006 m003 (6) 21 0 0 0
-H006 c003 m001 (2) 23 1 1 1
- 22 23 1 1 1
-H010 c013 m002 (7) 22 1 1 1
-H009 c006 m003 (8) 22 1 1 1
-H003 c004 m018 (9) 23 2 2 2
-H000 ancetre (14) 24 0 0 0
--------------------------------------------------------------------------
-Sum 21
-
-Tree length = 21
-Consistency index (CI) = 0.6190
-Homoplasy index (HI) = 0.3810
-CI excluding uninformative characters = 0.5789
-HI excluding uninformative characters = 0.4211
-Retention index (RI) = 0.8140
-Rescaled consistency index (RC) = 0.5039
-
- /------- H004 c002 m009
- /------------15
- | \------- H013 c004 m010
- |
- | /------- H008 c011 m005
- | /-----16
- /-----18 | \------- H012 c004 m002
- | +-----17
- | | \-------------- H014 c002 m003
- /-----19 |
- | | \--------------------- H007 c015 m028
- | |
- /-----20 \---------------------------- H005 c004 m010
- | |
- /-----21 \----------------------------------- H011 c002 m011
- | |
- | \------------------------------------------ H002 c006 m003
- |
- +------------------------------------------------- H006 c003 m001
- /-----23
- | | /------- H010 c013 m002
- | +----------------------------------------22
- | | \------- H009 c006 m003
-------24 |
- | \------------------------------------------------- H003 c004 m018
- |
- \-------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_24 --> node_23 13 1 1.000 1 ==> 2
- node_23 --> node_21 6 1 1.000 2 ==> 1
- 7 1 1.000 2 ==> 1
- node_21 --> node_20 1 1 0.333 2 ==> 1
- 2 1 0.333 2 ==> 1
- 8 1 1.000 2 ==> 1
- node_20 --> node_19 10 1 1.000 2 ==> 1
- node_19 --> node_18 9 1 1.000 2 ==> 1
- node_15 --> H013 c004 m010 12 1 0.333 2 ==> 1
- node_18 --> node_17 1 1 0.333 1 ==> 2
- 2 1 0.333 1 ==> 2
- node_16 --> H008 c011 m005 12 1 0.333 2 ==> 1
- node_17 --> H014 c002 m003 11 1 0.333 2 --> 1
- node_18 --> H007 c015 m028 11 1 0.333 2 --> 1
- node_19 --> H005 c004 m010 11 1 0.333 2 --> 1
- node_23 --> H006 c003 m001 5 1 1.000 2 ==> 1
- node_23 --> node_22 3 1 1.000 2 ==> 1
- node_22 --> H010 c013 m002 4 1 1.000 2 ==> 1
- node_22 --> H009 c006 m003 12 1 0.333 2 ==> 1
- node_23 --> H003 c004 m018 1 1 0.333 2 ==> 1
- 2 1 0.333 2 ==> 1
-
-Tree number 41:
-
-Branch lengths and linkages for tree #41
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 25 root 0 0 0
- 24 25 1 1 1
- 22 24 2 2 2
- 21 22 3 3 3
- 20 21 1 1 2
- 19 20 1 1 1
- 18 19 0 0 1
-H004 c002 m009 (1) 18 0 0 0
- 17 18 0 0 1
- 16 17 2 2 2
-H008 c011 m005 (4) 16 1 0 1
- 15 16 0 0 1
-H014 c002 m003 (10) 15 1 1 1
-H012 c004 m002 (13) 15 0 0 0
-H013 c004 m010 (11) 17 1 0 1
-H007 c015 m028 (12) 19 1 0 1
-H005 c004 m010 (3) 20 1 0 1
-H011 c002 m011 (5) 21 0 0 0
-H002 c006 m003 (6) 22 0 0 0
-H006 c003 m001 (2) 24 1 1 1
- 23 24 1 1 1
-H010 c013 m002 (7) 23 1 1 1
-H009 c006 m003 (8) 23 1 1 1
-H003 c004 m018 (9) 24 2 2 2
-H000 ancetre (14) 25 0 0 0
--------------------------------------------------------------------------
-Sum 21
-
-Tree length = 21
-Consistency index (CI) = 0.6190
-Homoplasy index (HI) = 0.3810
-CI excluding uninformative characters = 0.5789
-HI excluding uninformative characters = 0.4211
-Retention index (RI) = 0.8140
-Rescaled consistency index (RC) = 0.5039
-
- /----------------------- H004 c002 m009
- |
- | /----------- H008 c011 m005
- /----18 |
- | | /----16 /------ H014 c002 m003
- | | | \---15
- | \----17 \------ H012 c004 m002
- /---19 |
- | | \----------------- H013 c004 m010
- | |
- /----20 \----------------------------- H007 c015 m028
- | |
- /----21 \---------------------------------- H005 c004 m010
- | |
- /----22 \---------------------------------------- H011 c002 m011
- | |
- | \---------------------------------------------- H002 c006 m003
- |
- +---------------------------------------------------- H006 c003 m001
- /---24
- | | /------ H010 c013 m002
- | +--------------------------------------------23
- | | \------ H009 c006 m003
------25 |
- | \---------------------------------------------------- H003 c004 m018
- |
- \--------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_25 --> node_24 13 1 1.000 1 ==> 2
- node_24 --> node_22 6 1 1.000 2 ==> 1
- 7 1 1.000 2 ==> 1
- node_22 --> node_21 1 1 0.333 2 ==> 1
- 2 1 0.333 2 ==> 1
- 8 1 1.000 2 ==> 1
- node_21 --> node_20 10 1 1.000 2 ==> 1
- node_20 --> node_19 9 1 1.000 2 ==> 1
- node_17 --> node_16 1 1 0.333 1 ==> 2
- 2 1 0.333 1 ==> 2
- node_16 --> H008 c011 m005 12 1 0.333 2 --> 1
- node_15 --> H014 c002 m003 11 1 0.333 2 ==> 1
- node_17 --> H013 c004 m010 12 1 0.333 2 --> 1
- node_19 --> H007 c015 m028 11 1 0.333 2 --> 1
- node_20 --> H005 c004 m010 11 1 0.333 2 --> 1
- node_24 --> H006 c003 m001 5 1 1.000 2 ==> 1
- node_24 --> node_23 3 1 1.000 2 ==> 1
- node_23 --> H010 c013 m002 4 1 1.000 2 ==> 1
- node_23 --> H009 c006 m003 12 1 0.333 2 ==> 1
- node_24 --> H003 c004 m018 1 1 0.333 2 ==> 1
- 2 1 0.333 2 ==> 1
-
-Tree number 42:
-
-Branch lengths and linkages for tree #42
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 25 root 0 0 0
- 24 25 1 1 1
- 22 24 2 2 2
- 21 22 3 3 3
- 20 21 1 1 2
- 19 20 1 1 1
- 15 19 0 0 1
-H004 c002 m009 (1) 15 0 0 0
-H013 c004 m010 (11) 15 1 1 1
- 18 19 0 0 1
- 17 18 2 2 2
- 16 17 0 0 1
-H008 c011 m005 (4) 16 1 1 1
-H012 c004 m002 (13) 16 0 0 0
-H014 c002 m003 (10) 17 1 0 1
-H007 c015 m028 (12) 18 1 0 1
-H005 c004 m010 (3) 20 1 0 1
-H011 c002 m011 (5) 21 0 0 0
-H002 c006 m003 (6) 22 0 0 0
-H006 c003 m001 (2) 24 1 1 1
- 23 24 1 1 1
-H010 c013 m002 (7) 23 1 1 1
-H009 c006 m003 (8) 23 1 1 1
-H003 c004 m018 (9) 24 2 2 2
-H000 ancetre (14) 25 0 0 0
--------------------------------------------------------------------------
-Sum 21
-
-Tree length = 21
-Consistency index (CI) = 0.6190
-Homoplasy index (HI) = 0.3810
-CI excluding uninformative characters = 0.5789
-HI excluding uninformative characters = 0.4211
-Retention index (RI) = 0.8140
-Rescaled consistency index (RC) = 0.5039
-
- /------ H004 c002 m009
- /-----------------15
- | \------ H013 c004 m010
- |
- | /------ H008 c011 m005
- /----19 /-----16
- | | | \------ H012 c004 m002
- | | /----17
- | | | \------------- H014 c002 m003
- /-----20 \----18
- | | \------------------- H007 c015 m028
- | |
- /----21 \------------------------------- H005 c004 m010
- | |
- /----22 \-------------------------------------- H011 c002 m011
- | |
- | \-------------------------------------------- H002 c006 m003
- |
- +-------------------------------------------------- H006 c003 m001
- /-----24
- | | /------ H010 c013 m002
- | +------------------------------------------23
- | | \------ H009 c006 m003
------25 |
- | \-------------------------------------------------- H003 c004 m018
- |
- \--------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_25 --> node_24 13 1 1.000 1 ==> 2
- node_24 --> node_22 6 1 1.000 2 ==> 1
- 7 1 1.000 2 ==> 1
- node_22 --> node_21 1 1 0.333 2 ==> 1
- 2 1 0.333 2 ==> 1
- 8 1 1.000 2 ==> 1
- node_21 --> node_20 10 1 1.000 2 ==> 1
- node_20 --> node_19 9 1 1.000 2 ==> 1
- node_15 --> H013 c004 m010 12 1 0.333 2 ==> 1
- node_18 --> node_17 1 1 0.333 1 ==> 2
- 2 1 0.333 1 ==> 2
- node_16 --> H008 c011 m005 12 1 0.333 2 ==> 1
- node_17 --> H014 c002 m003 11 1 0.333 2 --> 1
- node_18 --> H007 c015 m028 11 1 0.333 2 --> 1
- node_20 --> H005 c004 m010 11 1 0.333 2 --> 1
- node_24 --> H006 c003 m001 5 1 1.000 2 ==> 1
- node_24 --> node_23 3 1 1.000 2 ==> 1
- node_23 --> H010 c013 m002 4 1 1.000 2 ==> 1
- node_23 --> H009 c006 m003 12 1 0.333 2 ==> 1
- node_24 --> H003 c004 m018 1 1 0.333 2 ==> 1
- 2 1 0.333 2 ==> 1
-
-Tree number 43:
-
-Branch lengths and linkages for tree #43
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 24 root 0 0 0
- 23 24 1 1 1
- 21 23 2 2 2
- 20 21 1 1 3
- 18 20 2 2 2
- 17 18 1 0 2
- 15 17 1 0 1
-H004 c002 m009 (1) 15 0 0 0
-H013 c004 m010 (11) 15 1 1 1
- 16 17 1 1 1
-H005 c004 m010 (3) 16 0 0 1
-H007 c015 m028 (12) 16 1 0 1
-H011 c002 m011 (5) 18 0 0 2
- 19 20 2 0 2
-H008 c011 m005 (4) 19 1 1 1
-H014 c002 m003 (10) 19 1 1 1
-H012 c004 m002 (13) 19 0 0 0
-H002 c006 m003 (6) 21 0 0 0
-H006 c003 m001 (2) 23 1 1 1
- 22 23 1 1 1
-H010 c013 m002 (7) 22 1 1 1
-H009 c006 m003 (8) 22 1 1 1
-H003 c004 m018 (9) 23 2 2 2
-H000 ancetre (14) 24 0 0 0
--------------------------------------------------------------------------
-Sum 21
-
-Tree length = 21
-Consistency index (CI) = 0.6190
-Homoplasy index (HI) = 0.3810
-CI excluding uninformative characters = 0.5789
-HI excluding uninformative characters = 0.4211
-Retention index (RI) = 0.8140
-Rescaled consistency index (RC) = 0.5039
-
- /-------- H004 c002 m009
- /------15
- | \-------- H013 c004 m010
- /------17
- | | /-------- H005 c004 m010
- | \------16
- /------18 \-------- H007 c015 m028
- | |
- | \------------------------ H011 c002 m011
- /-----20
- | | /-------- H008 c011 m005
- | | |
- | \----------------------19-------- H014 c002 m003
- /------21 |
- | | \-------- H012 c004 m002
- | |
- | \--------------------------------------- H002 c006 m003
- |
- +----------------------------------------------- H006 c003 m001
- /------23
- | | /-------- H010 c013 m002
- | +-------------------------------------22
- | | \-------- H009 c006 m003
--------24 |
- | \----------------------------------------------- H003 c004 m018
- |
- \------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_24 --> node_23 13 1 1.000 1 ==> 2
- node_23 --> node_21 6 1 1.000 2 ==> 1
- 7 1 1.000 2 ==> 1
- node_21 --> node_20 8 1 1.000 2 ==> 1
- node_20 --> node_18 1 1 0.500 2 ==> 1
- 2 1 0.500 2 ==> 1
- node_18 --> node_17 10 1 0.500 2 --> 1
- node_17 --> node_15 9 1 0.333 2 --> 1
- node_15 --> H013 c004 m010 12 1 0.333 2 ==> 1
- node_17 --> node_16 11 1 0.500 2 ==> 1
- node_16 --> H007 c015 m028 9 1 0.333 2 --> 1
- node_20 --> node_19 9 1 0.333 2 --> 1
- 10 1 0.500 2 --> 1
- node_19 --> H008 c011 m005 12 1 0.333 2 ==> 1
- node_19 --> H014 c002 m003 11 1 0.500 2 ==> 1
- node_23 --> H006 c003 m001 5 1 1.000 2 ==> 1
- node_23 --> node_22 3 1 1.000 2 ==> 1
- node_22 --> H010 c013 m002 4 1 1.000 2 ==> 1
- node_22 --> H009 c006 m003 12 1 0.333 2 ==> 1
- node_23 --> H003 c004 m018 1 1 0.500 2 ==> 1
- 2 1 0.500 2 ==> 1
-
-Tree number 44:
-
-Branch lengths and linkages for tree #44
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 23 root 0 0 0
- 22 23 1 1 1
- 20 22 2 2 2
- 19 20 3 3 3
- 18 19 0 0 1
- 17 18 2 2 2
- 16 17 0 0 1
-H004 c002 m009 (1) 16 0 0 0
- 15 16 1 1 1
-H005 c004 m010 (3) 15 1 1 1
-H007 c015 m028 (12) 15 0 0 0
-H011 c002 m011 (5) 16 2 2 2
-H013 c004 m010 (11) 17 1 0 1
-H008 c011 m005 (4) 18 1 0 1
-H014 c002 m003 (10) 19 1 1 1
-H012 c004 m002 (13) 19 0 0 0
-H002 c006 m003 (6) 20 0 0 0
-H006 c003 m001 (2) 22 1 1 1
- 21 22 1 1 1
-H010 c013 m002 (7) 21 1 1 1
-H009 c006 m003 (8) 21 1 1 1
-H003 c004 m018 (9) 22 2 2 2
-H000 ancetre (14) 23 0 0 0
--------------------------------------------------------------------------
-Sum 21
-
-Tree length = 21
-Consistency index (CI) = 0.6190
-Homoplasy index (HI) = 0.3810
-CI excluding uninformative characters = 0.5789
-HI excluding uninformative characters = 0.4211
-Retention index (RI) = 0.8140
-Rescaled consistency index (RC) = 0.5039
-
- /-------------- H004 c002 m009
- |
- | /------- H005 c004 m010
- /-----16-----15
- | | \------- H007 c015 m028
- | |
- /-----17 \-------------- H011 c002 m011
- | |
- /-----18 \--------------------- H013 c004 m010
- | |
- | \---------------------------- H008 c011 m005
- /-----19
- | +----------------------------------- H014 c002 m003
- | |
- /-----20 \----------------------------------- H012 c004 m002
- | |
- | \------------------------------------------ H002 c006 m003
- |
- +------------------------------------------------- H006 c003 m001
- /-----22
- | | /------- H010 c013 m002
- | +----------------------------------------21
- | | \------- H009 c006 m003
-------23 |
- | \------------------------------------------------- H003 c004 m018
- |
- \-------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_23 --> node_22 13 1 1.000 1 ==> 2
- node_22 --> node_20 6 1 1.000 2 ==> 1
- 7 1 1.000 2 ==> 1
- node_20 --> node_19 8 1 1.000 2 ==> 1
- 9 1 0.333 2 ==> 1
- 10 1 0.500 2 ==> 1
- node_18 --> node_17 1 1 0.500 2 ==> 1
- 2 1 0.500 2 ==> 1
- node_16 --> node_15 11 1 0.500 2 ==> 1
- node_15 --> H005 c004 m010 9 1 0.333 1 ==> 2
- node_16 --> H011 c002 m011 9 1 0.333 1 ==> 2
- 10 1 0.500 1 ==> 2
- node_17 --> H013 c004 m010 12 1 0.333 2 --> 1
- node_18 --> H008 c011 m005 12 1 0.333 2 --> 1
- node_19 --> H014 c002 m003 11 1 0.500 2 ==> 1
- node_22 --> H006 c003 m001 5 1 1.000 2 ==> 1
- node_22 --> node_21 3 1 1.000 2 ==> 1
- node_21 --> H010 c013 m002 4 1 1.000 2 ==> 1
- node_21 --> H009 c006 m003 12 1 0.333 2 ==> 1
- node_22 --> H003 c004 m018 1 1 0.500 2 ==> 1
- 2 1 0.500 2 ==> 1
-
-Tree number 45:
-
-Branch lengths and linkages for tree #45
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 24 root 0 0 0
- 23 24 1 1 1
- 21 23 2 2 2
- 20 21 3 3 3
- 19 20 0 0 1
- 18 19 2 2 2
- 17 18 0 0 1
-H004 c002 m009 (1) 17 0 0 0
- 16 17 0 0 1
- 15 16 1 1 1
-H005 c004 m010 (3) 15 1 0 1
-H007 c015 m028 (12) 15 0 0 1
-H011 c002 m011 (5) 16 2 1 2
-H013 c004 m010 (11) 18 1 0 1
-H008 c011 m005 (4) 19 1 0 1
-H014 c002 m003 (10) 20 1 1 1
-H012 c004 m002 (13) 20 0 0 0
-H002 c006 m003 (6) 21 0 0 0
-H006 c003 m001 (2) 23 1 1 1
- 22 23 1 1 1
-H010 c013 m002 (7) 22 1 1 1
-H009 c006 m003 (8) 22 1 1 1
-H003 c004 m018 (9) 23 2 2 2
-H000 ancetre (14) 24 0 0 0
--------------------------------------------------------------------------
-Sum 21
-
-Tree length = 21
-Consistency index (CI) = 0.6190
-Homoplasy index (HI) = 0.3810
-CI excluding uninformative characters = 0.5789
-HI excluding uninformative characters = 0.4211
-Retention index (RI) = 0.8140
-Rescaled consistency index (RC) = 0.5039
-
- /------------------- H004 c002 m009
- |
- | /------ H005 c004 m010
- /----17 /-----15
- | | | \------ H007 c015 m028
- | \----16
- /----18 \------------- H011 c002 m011
- | |
- /-----19 \------------------------- H013 c004 m010
- | |
- | \------------------------------- H008 c011 m005
- /----20
- | +-------------------------------------- H014 c002 m003
- | |
- /----21 \-------------------------------------- H012 c004 m002
- | |
- | \-------------------------------------------- H002 c006 m003
- |
- +-------------------------------------------------- H006 c003 m001
- /-----23
- | | /------ H010 c013 m002
- | +------------------------------------------22
- | | \------ H009 c006 m003
------24 |
- | \-------------------------------------------------- H003 c004 m018
- |
- \--------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_24 --> node_23 13 1 1.000 1 ==> 2
- node_23 --> node_21 6 1 1.000 2 ==> 1
- 7 1 1.000 2 ==> 1
- node_21 --> node_20 8 1 1.000 2 ==> 1
- 9 1 0.333 2 ==> 1
- 10 1 0.500 2 ==> 1
- node_19 --> node_18 1 1 0.500 2 ==> 1
- 2 1 0.500 2 ==> 1
- node_16 --> node_15 11 1 0.500 2 ==> 1
- node_15 --> H005 c004 m010 9 1 0.333 1 --> 2
- node_16 --> H011 c002 m011 9 1 0.333 1 --> 2
- 10 1 0.500 1 ==> 2
- node_18 --> H013 c004 m010 12 1 0.333 2 --> 1
- node_19 --> H008 c011 m005 12 1 0.333 2 --> 1
- node_20 --> H014 c002 m003 11 1 0.500 2 ==> 1
- node_23 --> H006 c003 m001 5 1 1.000 2 ==> 1
- node_23 --> node_22 3 1 1.000 2 ==> 1
- node_22 --> H010 c013 m002 4 1 1.000 2 ==> 1
- node_22 --> H009 c006 m003 12 1 0.333 2 ==> 1
- node_23 --> H003 c004 m018 1 1 0.500 2 ==> 1
- 2 1 0.500 2 ==> 1
-
-Tree number 46:
-
-Branch lengths and linkages for tree #46
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 25 root 0 0 0
- 24 25 1 1 1
- 22 24 2 2 2
- 21 22 3 3 3
- 20 21 1 1 2
- 19 20 1 1 1
- 18 19 0 0 1
-H004 c002 m009 (1) 18 0 0 0
- 17 18 0 0 1
- 16 17 2 2 2
-H008 c011 m005 (4) 16 1 0 1
- 15 16 0 0 1
-H014 c002 m003 (10) 15 1 1 1
-H012 c004 m002 (13) 15 0 0 0
-H013 c004 m010 (11) 17 1 0 1
-H007 c015 m028 (12) 19 1 0 1
-H005 c004 m010 (3) 20 1 0 1
-H011 c002 m011 (5) 21 0 0 0
-H003 c004 m018 (9) 22 0 0 0
-H006 c003 m001 (2) 24 1 1 1
-H002 c006 m003 (6) 24 2 2 2
- 23 24 1 1 1
-H010 c013 m002 (7) 23 1 1 1
-H009 c006 m003 (8) 23 1 1 1
-H000 ancetre (14) 25 0 0 0
--------------------------------------------------------------------------
-Sum 21
-
-Tree length = 21
-Consistency index (CI) = 0.6190
-Homoplasy index (HI) = 0.3810
-CI excluding uninformative characters = 0.5789
-HI excluding uninformative characters = 0.4211
-Retention index (RI) = 0.8140
-Rescaled consistency index (RC) = 0.5039
-
- /----------------------- H004 c002 m009
- |
- | /----------- H008 c011 m005
- /----18 |
- | | /----16 /------ H014 c002 m003
- | | | \---15
- | \----17 \------ H012 c004 m002
- /---19 |
- | | \----------------- H013 c004 m010
- | |
- /----20 \----------------------------- H007 c015 m028
- | |
- /----21 \---------------------------------- H005 c004 m010
- | |
- /----22 \---------------------------------------- H011 c002 m011
- | |
- | \---------------------------------------------- H003 c004 m018
- |
- +---------------------------------------------------- H006 c003 m001
- /---24
- | +---------------------------------------------------- H002 c006 m003
- | |
- | | /------ H010 c013 m002
------25 \--------------------------------------------23
- | \------ H009 c006 m003
- |
- \--------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_25 --> node_24 13 1 1.000 1 ==> 2
- node_24 --> node_22 1 1 0.500 2 ==> 1
- 2 1 0.500 2 ==> 1
- node_22 --> node_21 6 1 0.500 2 ==> 1
- 7 1 0.500 2 ==> 1
- 8 1 1.000 2 ==> 1
- node_21 --> node_20 10 1 1.000 2 ==> 1
- node_20 --> node_19 9 1 1.000 2 ==> 1
- node_17 --> node_16 1 1 0.500 1 ==> 2
- 2 1 0.500 1 ==> 2
- node_16 --> H008 c011 m005 12 1 0.333 2 --> 1
- node_15 --> H014 c002 m003 11 1 0.333 2 ==> 1
- node_17 --> H013 c004 m010 12 1 0.333 2 --> 1
- node_19 --> H007 c015 m028 11 1 0.333 2 --> 1
- node_20 --> H005 c004 m010 11 1 0.333 2 --> 1
- node_24 --> H006 c003 m001 5 1 1.000 2 ==> 1
- node_24 --> H002 c006 m003 6 1 0.500 2 ==> 1
- 7 1 0.500 2 ==> 1
- node_24 --> node_23 3 1 1.000 2 ==> 1
- node_23 --> H010 c013 m002 4 1 1.000 2 ==> 1
- node_23 --> H009 c006 m003 12 1 0.333 2 ==> 1
-
-Tree number 47:
-
-Branch lengths and linkages for tree #47
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 22 root 0 0 0
- 21 22 1 1 1
- 19 21 2 2 2
- 18 19 3 3 3
- 17 18 1 1 1
- 16 17 2 2 2
- 15 16 1 1 1
-H004 c002 m009 (1) 15 0 0 0
-H011 c002 m011 (5) 15 2 2 2
-H013 c004 m010 (11) 15 1 1 1
-H005 c004 m010 (3) 16 1 1 1
-H007 c015 m028 (12) 16 0 0 0
-H014 c002 m003 (10) 17 0 0 0
-H008 c011 m005 (4) 18 1 1 1
-H012 c004 m002 (13) 18 0 0 0
-H002 c006 m003 (6) 19 0 0 0
-H006 c003 m001 (2) 21 1 1 1
- 20 21 1 1 1
-H010 c013 m002 (7) 20 1 1 1
-H009 c006 m003 (8) 20 1 1 1
-H003 c004 m018 (9) 21 2 2 2
-H000 ancetre (14) 22 0 0 0
--------------------------------------------------------------------------
-Sum 21
-
-Tree length = 21
-Consistency index (CI) = 0.6190
-Homoplasy index (HI) = 0.3810
-CI excluding uninformative characters = 0.5789
-HI excluding uninformative characters = 0.4211
-Retention index (RI) = 0.8140
-Rescaled consistency index (RC) = 0.5039
-
- /-------- H004 c002 m009
- |
- /------15-------- H011 c002 m011
- | |
- | \-------- H013 c004 m010
- /------16
- | +---------------- H005 c004 m010
- | |
- /------17 \---------------- H007 c015 m028
- | |
- | \------------------------ H014 c002 m003
- /-----18
- | +-------------------------------- H008 c011 m005
- | |
- /------19 \-------------------------------- H012 c004 m002
- | |
- | \--------------------------------------- H002 c006 m003
- |
- +----------------------------------------------- H006 c003 m001
- /------21
- | | /-------- H010 c013 m002
- | +-------------------------------------20
- | | \-------- H009 c006 m003
--------22 |
- | \----------------------------------------------- H003 c004 m018
- |
- \------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_22 --> node_21 13 1 1.000 1 ==> 2
- node_21 --> node_19 6 1 1.000 2 ==> 1
- 7 1 1.000 2 ==> 1
- node_19 --> node_18 8 1 1.000 2 ==> 1
- 9 1 0.333 2 ==> 1
- 10 1 0.500 2 ==> 1
- node_18 --> node_17 11 1 0.500 2 ==> 1
- node_17 --> node_16 1 1 0.500 2 ==> 1
- 2 1 0.500 2 ==> 1
- node_16 --> node_15 11 1 0.500 1 ==> 2
- node_15 --> H011 c002 m011 9 1 0.333 1 ==> 2
- 10 1 0.500 1 ==> 2
- node_15 --> H013 c004 m010 12 1 0.333 2 ==> 1
- node_16 --> H005 c004 m010 9 1 0.333 1 ==> 2
- node_18 --> H008 c011 m005 12 1 0.333 2 ==> 1
- node_21 --> H006 c003 m001 5 1 1.000 2 ==> 1
- node_21 --> node_20 3 1 1.000 2 ==> 1
- node_20 --> H010 c013 m002 4 1 1.000 2 ==> 1
- node_20 --> H009 c006 m003 12 1 0.333 2 ==> 1
- node_21 --> H003 c004 m018 1 1 0.500 2 ==> 1
- 2 1 0.500 2 ==> 1
-
-Tree number 48:
-
-Branch lengths and linkages for tree #48
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 23 root 0 0 0
- 22 23 1 1 1
- 20 22 2 2 2
- 19 20 3 3 3
- 18 19 1 1 2
- 16 18 1 0 1
-H004 c002 m009 (1) 16 0 0 0
- 15 16 2 2 2
-H008 c011 m005 (4) 15 1 1 1
-H014 c002 m003 (10) 15 1 1 1
-H012 c004 m002 (13) 15 0 0 0
-H013 c004 m010 (11) 16 1 1 1
- 17 18 1 1 1
-H005 c004 m010 (3) 17 0 0 1
-H007 c015 m028 (12) 17 1 0 1
-H011 c002 m011 (5) 19 0 0 0
-H002 c006 m003 (6) 20 0 0 0
-H006 c003 m001 (2) 22 1 1 1
- 21 22 1 1 1
-H010 c013 m002 (7) 21 1 1 1
-H009 c006 m003 (8) 21 1 1 1
-H003 c004 m018 (9) 22 2 2 2
-H000 ancetre (14) 23 0 0 0
--------------------------------------------------------------------------
-Sum 21
-
-Tree length = 21
-Consistency index (CI) = 0.6190
-Homoplasy index (HI) = 0.3810
-CI excluding uninformative characters = 0.5789
-HI excluding uninformative characters = 0.4211
-Retention index (RI) = 0.8140
-Rescaled consistency index (RC) = 0.5039
-
- /---------------- H004 c002 m009
- |
- | /-------- H008 c011 m005
- | |
- /------16------15-------- H014 c002 m003
- | | |
- | | \-------- H012 c004 m002
- | |
- /------18 \---------------- H013 c004 m010
- | |
- | | /-------- H005 c004 m010
- /-----19 \--------------17
- | | \-------- H007 c015 m028
- | |
- /------20 \-------------------------------- H011 c002 m011
- | |
- | \--------------------------------------- H002 c006 m003
- |
- +----------------------------------------------- H006 c003 m001
- /------22
- | | /-------- H010 c013 m002
- | +-------------------------------------21
- | | \-------- H009 c006 m003
--------23 |
- | \----------------------------------------------- H003 c004 m018
- |
- \------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_23 --> node_22 13 1 1.000 1 ==> 2
- node_22 --> node_20 6 1 1.000 2 ==> 1
- 7 1 1.000 2 ==> 1
- node_20 --> node_19 1 1 0.333 2 ==> 1
- 2 1 0.333 2 ==> 1
- 8 1 1.000 2 ==> 1
- node_19 --> node_18 10 1 1.000 2 ==> 1
- node_18 --> node_16 9 1 0.500 2 --> 1
- node_16 --> node_15 1 1 0.333 1 ==> 2
- 2 1 0.333 1 ==> 2
- node_15 --> H008 c011 m005 12 1 0.333 2 ==> 1
- node_15 --> H014 c002 m003 11 1 0.500 2 ==> 1
- node_16 --> H013 c004 m010 12 1 0.333 2 ==> 1
- node_18 --> node_17 11 1 0.500 2 ==> 1
- node_17 --> H007 c015 m028 9 1 0.500 2 --> 1
- node_22 --> H006 c003 m001 5 1 1.000 2 ==> 1
- node_22 --> node_21 3 1 1.000 2 ==> 1
- node_21 --> H010 c013 m002 4 1 1.000 2 ==> 1
- node_21 --> H009 c006 m003 12 1 0.333 2 ==> 1
- node_22 --> H003 c004 m018 1 1 0.333 2 ==> 1
- 2 1 0.333 2 ==> 1
-
-Tree number 49:
-
-Branch lengths and linkages for tree #49
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 23 root 0 0 0
- 22 23 1 1 1
- 20 22 2 2 2
- 19 20 3 3 3
- 18 19 1 1 2
- 16 18 1 0 1
-H004 c002 m009 (1) 16 0 0 0
- 15 16 2 2 2
-H008 c011 m005 (4) 15 1 1 1
-H014 c002 m003 (10) 15 1 1 1
-H012 c004 m002 (13) 15 0 0 0
-H013 c004 m010 (11) 16 1 1 1
- 17 18 1 1 1
-H005 c004 m010 (3) 17 0 0 1
-H007 c015 m028 (12) 17 1 0 1
-H011 c002 m011 (5) 19 0 0 0
-H003 c004 m018 (9) 20 0 0 0
-H006 c003 m001 (2) 22 1 1 1
-H002 c006 m003 (6) 22 2 2 2
- 21 22 1 1 1
-H010 c013 m002 (7) 21 1 1 1
-H009 c006 m003 (8) 21 1 1 1
-H000 ancetre (14) 23 0 0 0
--------------------------------------------------------------------------
-Sum 21
-
-Tree length = 21
-Consistency index (CI) = 0.6190
-Homoplasy index (HI) = 0.3810
-CI excluding uninformative characters = 0.5789
-HI excluding uninformative characters = 0.4211
-Retention index (RI) = 0.8140
-Rescaled consistency index (RC) = 0.5039
-
- /---------------- H004 c002 m009
- |
- | /-------- H008 c011 m005
- | |
- /------16------15-------- H014 c002 m003
- | | |
- | | \-------- H012 c004 m002
- | |
- /------18 \---------------- H013 c004 m010
- | |
- | | /-------- H005 c004 m010
- /-----19 \--------------17
- | | \-------- H007 c015 m028
- | |
- /------20 \-------------------------------- H011 c002 m011
- | |
- | \--------------------------------------- H003 c004 m018
- |
- +----------------------------------------------- H006 c003 m001
- /------22
- | +----------------------------------------------- H002 c006 m003
- | |
- | | /-------- H010 c013 m002
--------23 \-------------------------------------21
- | \-------- H009 c006 m003
- |
- \------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_23 --> node_22 13 1 1.000 1 ==> 2
- node_22 --> node_20 1 1 0.500 2 ==> 1
- 2 1 0.500 2 ==> 1
- node_20 --> node_19 6 1 0.500 2 ==> 1
- 7 1 0.500 2 ==> 1
- 8 1 1.000 2 ==> 1
- node_19 --> node_18 10 1 1.000 2 ==> 1
- node_18 --> node_16 9 1 0.500 2 --> 1
- node_16 --> node_15 1 1 0.500 1 ==> 2
- 2 1 0.500 1 ==> 2
- node_15 --> H008 c011 m005 12 1 0.333 2 ==> 1
- node_15 --> H014 c002 m003 11 1 0.500 2 ==> 1
- node_16 --> H013 c004 m010 12 1 0.333 2 ==> 1
- node_18 --> node_17 11 1 0.500 2 ==> 1
- node_17 --> H007 c015 m028 9 1 0.500 2 --> 1
- node_22 --> H006 c003 m001 5 1 1.000 2 ==> 1
- node_22 --> H002 c006 m003 6 1 0.500 2 ==> 1
- 7 1 0.500 2 ==> 1
- node_22 --> node_21 3 1 1.000 2 ==> 1
- node_21 --> H010 c013 m002 4 1 1.000 2 ==> 1
- node_21 --> H009 c006 m003 12 1 0.333 2 ==> 1
-
-Tree number 50:
-
-Branch lengths and linkages for tree #50
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 25 root 0 0 0
- 24 25 1 1 1
- 22 24 2 2 2
- 21 22 3 3 3
- 20 21 1 1 2
- 19 20 1 1 1
- 15 19 0 0 1
-H004 c002 m009 (1) 15 0 0 0
-H013 c004 m010 (11) 15 1 1 1
- 18 19 0 0 1
- 17 18 2 2 2
- 16 17 0 0 1
-H008 c011 m005 (4) 16 1 1 1
-H012 c004 m002 (13) 16 0 0 0
-H014 c002 m003 (10) 17 1 0 1
-H007 c015 m028 (12) 18 1 0 1
-H005 c004 m010 (3) 20 1 0 1
-H011 c002 m011 (5) 21 0 0 0
-H003 c004 m018 (9) 22 0 0 0
-H006 c003 m001 (2) 24 1 1 1
-H002 c006 m003 (6) 24 2 2 2
- 23 24 1 1 1
-H010 c013 m002 (7) 23 1 1 1
-H009 c006 m003 (8) 23 1 1 1
-H000 ancetre (14) 25 0 0 0
--------------------------------------------------------------------------
-Sum 21
-
-Tree length = 21
-Consistency index (CI) = 0.6190
-Homoplasy index (HI) = 0.3810
-CI excluding uninformative characters = 0.5789
-HI excluding uninformative characters = 0.4211
-Retention index (RI) = 0.8140
-Rescaled consistency index (RC) = 0.5039
-
- /------ H004 c002 m009
- /-----------------15
- | \------ H013 c004 m010
- |
- | /------ H008 c011 m005
- /----19 /-----16
- | | | \------ H012 c004 m002
- | | /----17
- | | | \------------- H014 c002 m003
- /-----20 \----18
- | | \------------------- H007 c015 m028
- | |
- /----21 \------------------------------- H005 c004 m010
- | |
- /----22 \-------------------------------------- H011 c002 m011
- | |
- | \-------------------------------------------- H003 c004 m018
- |
- +-------------------------------------------------- H006 c003 m001
- /-----24
- | +-------------------------------------------------- H002 c006 m003
- | |
- | | /------ H010 c013 m002
------25 \------------------------------------------23
- | \------ H009 c006 m003
- |
- \--------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_25 --> node_24 13 1 1.000 1 ==> 2
- node_24 --> node_22 1 1 0.500 2 ==> 1
- 2 1 0.500 2 ==> 1
- node_22 --> node_21 6 1 0.500 2 ==> 1
- 7 1 0.500 2 ==> 1
- 8 1 1.000 2 ==> 1
- node_21 --> node_20 10 1 1.000 2 ==> 1
- node_20 --> node_19 9 1 1.000 2 ==> 1
- node_15 --> H013 c004 m010 12 1 0.333 2 ==> 1
- node_18 --> node_17 1 1 0.500 1 ==> 2
- 2 1 0.500 1 ==> 2
- node_16 --> H008 c011 m005 12 1 0.333 2 ==> 1
- node_17 --> H014 c002 m003 11 1 0.333 2 --> 1
- node_18 --> H007 c015 m028 11 1 0.333 2 --> 1
- node_20 --> H005 c004 m010 11 1 0.333 2 --> 1
- node_24 --> H006 c003 m001 5 1 1.000 2 ==> 1
- node_24 --> H002 c006 m003 6 1 0.500 2 ==> 1
- 7 1 0.500 2 ==> 1
- node_24 --> node_23 3 1 1.000 2 ==> 1
- node_23 --> H010 c013 m002 4 1 1.000 2 ==> 1
- node_23 --> H009 c006 m003 12 1 0.333 2 ==> 1
-
-Tree number 51:
-
-Branch lengths and linkages for tree #51
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 22 root 0 0 0
- 21 22 1 1 1
- 19 21 2 2 2
- 18 19 3 3 3
- 17 18 2 2 2
-H004 c002 m009 (1) 17 0 0 0
- 15 17 1 1 1
-H005 c004 m010 (3) 15 1 1 1
-H007 c015 m028 (12) 15 0 0 0
- 16 17 2 2 2
-H008 c011 m005 (4) 16 1 1 1
-H014 c002 m003 (10) 16 1 1 1
-H012 c004 m002 (13) 16 0 0 0
-H013 c004 m010 (11) 17 1 1 1
-H011 c002 m011 (5) 18 0 0 0
-H002 c006 m003 (6) 19 0 0 0
-H006 c003 m001 (2) 21 1 1 1
- 20 21 1 1 1
-H010 c013 m002 (7) 20 1 1 1
-H009 c006 m003 (8) 20 1 1 1
-H003 c004 m018 (9) 21 2 2 2
-H000 ancetre (14) 22 0 0 0
--------------------------------------------------------------------------
-Sum 21
-
-Tree length = 21
-Consistency index (CI) = 0.6190
-Homoplasy index (HI) = 0.3810
-CI excluding uninformative characters = 0.5789
-HI excluding uninformative characters = 0.4211
-Retention index (RI) = 0.8140
-Rescaled consistency index (RC) = 0.5039
-
- /------------------ H004 c002 m009
- |
- | /--------- H005 c004 m010
- +-------15
- | \--------- H007 c015 m028
- |
- /-------17 /--------- H008 c011 m005
- | | |
- | +-------16--------- H014 c002 m003
- | | |
- /-------18 | \--------- H012 c004 m002
- | | |
- | | \------------------ H013 c004 m010
- /-------19 |
- | | \--------------------------- H011 c002 m011
- | |
- | \------------------------------------ H002 c006 m003
- |
- +--------------------------------------------- H006 c003 m001
- /-------21
- | | /--------- H010 c013 m002
- | +----------------------------------20
- | | \--------- H009 c006 m003
---------22 |
- | \--------------------------------------------- H003 c004 m018
- |
- \------------------------------------------------------ H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_22 --> node_21 13 1 1.000 1 ==> 2
- node_21 --> node_19 6 1 1.000 2 ==> 1
- 7 1 1.000 2 ==> 1
- node_19 --> node_18 1 1 0.333 2 ==> 1
- 2 1 0.333 2 ==> 1
- 8 1 1.000 2 ==> 1
- node_18 --> node_17 9 1 0.500 2 ==> 1
- 10 1 1.000 2 ==> 1
- node_17 --> node_15 11 1 0.500 2 ==> 1
- node_15 --> H005 c004 m010 9 1 0.500 1 ==> 2
- node_17 --> node_16 1 1 0.333 1 ==> 2
- 2 1 0.333 1 ==> 2
- node_16 --> H008 c011 m005 12 1 0.333 2 ==> 1
- node_16 --> H014 c002 m003 11 1 0.500 2 ==> 1
- node_17 --> H013 c004 m010 12 1 0.333 2 ==> 1
- node_21 --> H006 c003 m001 5 1 1.000 2 ==> 1
- node_21 --> node_20 3 1 1.000 2 ==> 1
- node_20 --> H010 c013 m002 4 1 1.000 2 ==> 1
- node_20 --> H009 c006 m003 12 1 0.333 2 ==> 1
- node_21 --> H003 c004 m018 1 1 0.333 2 ==> 1
- 2 1 0.333 2 ==> 1
-
-Tree number 52:
-
-Branch lengths and linkages for tree #52
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 22 root 0 0 0
- 21 22 1 1 1
- 19 21 2 2 2
- 18 19 3 3 3
- 17 18 2 2 2
-H004 c002 m009 (1) 17 0 0 0
- 15 17 1 1 1
-H005 c004 m010 (3) 15 1 1 1
-H007 c015 m028 (12) 15 0 0 0
- 16 17 2 2 2
-H008 c011 m005 (4) 16 1 1 1
-H014 c002 m003 (10) 16 1 1 1
-H012 c004 m002 (13) 16 0 0 0
-H013 c004 m010 (11) 17 1 1 1
-H011 c002 m011 (5) 18 0 0 0
-H003 c004 m018 (9) 19 0 0 0
-H006 c003 m001 (2) 21 1 1 1
-H002 c006 m003 (6) 21 2 2 2
- 20 21 1 1 1
-H010 c013 m002 (7) 20 1 1 1
-H009 c006 m003 (8) 20 1 1 1
-H000 ancetre (14) 22 0 0 0
--------------------------------------------------------------------------
-Sum 21
-
-Tree length = 21
-Consistency index (CI) = 0.6190
-Homoplasy index (HI) = 0.3810
-CI excluding uninformative characters = 0.5789
-HI excluding uninformative characters = 0.4211
-Retention index (RI) = 0.8140
-Rescaled consistency index (RC) = 0.5039
-
- /------------------ H004 c002 m009
- |
- | /--------- H005 c004 m010
- +-------15
- | \--------- H007 c015 m028
- |
- /-------17 /--------- H008 c011 m005
- | | |
- | +-------16--------- H014 c002 m003
- | | |
- /-------18 | \--------- H012 c004 m002
- | | |
- | | \------------------ H013 c004 m010
- /-------19 |
- | | \--------------------------- H011 c002 m011
- | |
- | \------------------------------------ H003 c004 m018
- |
- /-------21--------------------------------------------- H006 c003 m001
- | |
- | +--------------------------------------------- H002 c006 m003
- | |
---------22 | /--------- H010 c013 m002
- | \----------------------------------20
- | \--------- H009 c006 m003
- |
- \------------------------------------------------------ H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_22 --> node_21 13 1 1.000 1 ==> 2
- node_21 --> node_19 1 1 0.500 2 ==> 1
- 2 1 0.500 2 ==> 1
- node_19 --> node_18 6 1 0.500 2 ==> 1
- 7 1 0.500 2 ==> 1
- 8 1 1.000 2 ==> 1
- node_18 --> node_17 9 1 0.500 2 ==> 1
- 10 1 1.000 2 ==> 1
- node_17 --> node_15 11 1 0.500 2 ==> 1
- node_15 --> H005 c004 m010 9 1 0.500 1 ==> 2
- node_17 --> node_16 1 1 0.500 1 ==> 2
- 2 1 0.500 1 ==> 2
- node_16 --> H008 c011 m005 12 1 0.333 2 ==> 1
- node_16 --> H014 c002 m003 11 1 0.500 2 ==> 1
- node_17 --> H013 c004 m010 12 1 0.333 2 ==> 1
- node_21 --> H006 c003 m001 5 1 1.000 2 ==> 1
- node_21 --> H002 c006 m003 6 1 0.500 2 ==> 1
- 7 1 0.500 2 ==> 1
- node_21 --> node_20 3 1 1.000 2 ==> 1
- node_20 --> H010 c013 m002 4 1 1.000 2 ==> 1
- node_20 --> H009 c006 m003 12 1 0.333 2 ==> 1
-
-Tree number 53:
-
-Branch lengths and linkages for tree #53
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 23 root 0 0 0
- 22 23 1 1 1
- 20 22 0 0 2
- 19 20 2 2 2
- 18 19 3 1 3
- 17 18 2 2 2
-H004 c002 m009 (1) 17 0 0 0
- 15 17 1 1 1
-H005 c004 m010 (3) 15 1 1 1
-H007 c015 m028 (12) 15 0 0 0
- 16 17 2 2 2
-H008 c011 m005 (4) 16 1 1 1
-H014 c002 m003 (10) 16 1 1 1
-H012 c004 m002 (13) 16 0 0 0
-H013 c004 m010 (11) 17 1 1 1
-H011 c002 m011 (5) 18 0 0 0
-H003 c004 m018 (9) 19 0 0 2
-H002 c006 m003 (6) 20 2 0 2
-H006 c003 m001 (2) 22 1 1 1
- 21 22 1 1 1
-H010 c013 m002 (7) 21 1 1 1
-H009 c006 m003 (8) 21 1 1 1
-H000 ancetre (14) 23 0 0 0
--------------------------------------------------------------------------
-Sum 21
-
-Tree length = 21
-Consistency index (CI) = 0.6190
-Homoplasy index (HI) = 0.3810
-CI excluding uninformative characters = 0.5789
-HI excluding uninformative characters = 0.4211
-Retention index (RI) = 0.8140
-Rescaled consistency index (RC) = 0.5039
-
- /---------------- H004 c002 m009
- |
- | /-------- H005 c004 m010
- +------15
- | \-------- H007 c015 m028
- |
- /------17 /-------- H008 c011 m005
- | | |
- | +------16-------- H014 c002 m003
- | | |
- /------18 | \-------- H012 c004 m002
- | | |
- | | \---------------- H013 c004 m010
- /-----19 |
- | | \------------------------ H011 c002 m011
- | |
- /------20 \-------------------------------- H003 c004 m018
- | |
- | \--------------------------------------- H002 c006 m003
- |
- /------22----------------------------------------------- H006 c003 m001
- | |
- | | /-------- H010 c013 m002
--------23 \-------------------------------------21
- | \-------- H009 c006 m003
- |
- \------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_23 --> node_22 13 1 1.000 1 ==> 2
- node_20 --> node_19 1 1 0.500 2 ==> 1
- 2 1 0.500 2 ==> 1
- node_19 --> node_18 6 1 0.500 2 --> 1
- 7 1 0.500 2 --> 1
- 8 1 1.000 2 ==> 1
- node_18 --> node_17 9 1 0.500 2 ==> 1
- 10 1 1.000 2 ==> 1
- node_17 --> node_15 11 1 0.500 2 ==> 1
- node_15 --> H005 c004 m010 9 1 0.500 1 ==> 2
- node_17 --> node_16 1 1 0.500 1 ==> 2
- 2 1 0.500 1 ==> 2
- node_16 --> H008 c011 m005 12 1 0.333 2 ==> 1
- node_16 --> H014 c002 m003 11 1 0.500 2 ==> 1
- node_17 --> H013 c004 m010 12 1 0.333 2 ==> 1
- node_20 --> H002 c006 m003 6 1 0.500 2 --> 1
- 7 1 0.500 2 --> 1
- node_22 --> H006 c003 m001 5 1 1.000 2 ==> 1
- node_22 --> node_21 3 1 1.000 2 ==> 1
- node_21 --> H010 c013 m002 4 1 1.000 2 ==> 1
- node_21 --> H009 c006 m003 12 1 0.333 2 ==> 1
-
-Tree number 54:
-
-Branch lengths and linkages for tree #54
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 24 root 0 0 0
- 23 24 1 1 1
- 21 23 0 0 2
- 20 21 2 2 2
- 19 20 3 1 3
- 18 19 1 1 2
- 17 18 1 1 1
- 16 17 0 0 1
-H004 c002 m009 (1) 16 0 0 0
- 15 16 2 2 2
-H008 c011 m005 (4) 15 1 1 1
-H014 c002 m003 (10) 15 1 1 1
-H012 c004 m002 (13) 15 0 0 0
-H013 c004 m010 (11) 16 1 1 1
-H007 c015 m028 (12) 17 1 0 1
-H005 c004 m010 (3) 18 1 0 1
-H011 c002 m011 (5) 19 0 0 0
-H003 c004 m018 (9) 20 0 0 2
-H002 c006 m003 (6) 21 2 0 2
-H006 c003 m001 (2) 23 1 1 1
- 22 23 1 1 1
-H010 c013 m002 (7) 22 1 1 1
-H009 c006 m003 (8) 22 1 1 1
-H000 ancetre (14) 24 0 0 0
--------------------------------------------------------------------------
-Sum 21
-
-Tree length = 21
-Consistency index (CI) = 0.6190
-Homoplasy index (HI) = 0.3810
-CI excluding uninformative characters = 0.5789
-HI excluding uninformative characters = 0.4211
-Retention index (RI) = 0.8140
-Rescaled consistency index (RC) = 0.5039
-
- /------------- H004 c002 m009
- |
- | /------ H008 c011 m005
- | |
- /----16-----15------ H014 c002 m003
- | | |
- | | \------ H012 c004 m002
- /----17 |
- | | \------------- H013 c004 m010
- | |
- /----18 \------------------- H007 c015 m028
- | |
- /-----19 \------------------------- H005 c004 m010
- | |
- /----20 \------------------------------- H011 c002 m011
- | |
- /----21 \-------------------------------------- H003 c004 m018
- | |
- | \-------------------------------------------- H002 c006 m003
- |
- /-----23-------------------------------------------------- H006 c003 m001
- | |
- | | /------ H010 c013 m002
------24 \------------------------------------------22
- | \------ H009 c006 m003
- |
- \--------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_24 --> node_23 13 1 1.000 1 ==> 2
- node_21 --> node_20 1 1 0.500 2 ==> 1
- 2 1 0.500 2 ==> 1
- node_20 --> node_19 6 1 0.500 2 --> 1
- 7 1 0.500 2 --> 1
- 8 1 1.000 2 ==> 1
- node_19 --> node_18 10 1 1.000 2 ==> 1
- node_18 --> node_17 9 1 1.000 2 ==> 1
- node_16 --> node_15 1 1 0.500 1 ==> 2
- 2 1 0.500 1 ==> 2
- node_15 --> H008 c011 m005 12 1 0.333 2 ==> 1
- node_15 --> H014 c002 m003 11 1 0.333 2 ==> 1
- node_16 --> H013 c004 m010 12 1 0.333 2 ==> 1
- node_17 --> H007 c015 m028 11 1 0.333 2 --> 1
- node_18 --> H005 c004 m010 11 1 0.333 2 --> 1
- node_21 --> H002 c006 m003 6 1 0.500 2 --> 1
- 7 1 0.500 2 --> 1
- node_23 --> H006 c003 m001 5 1 1.000 2 ==> 1
- node_23 --> node_22 3 1 1.000 2 ==> 1
- node_22 --> H010 c013 m002 4 1 1.000 2 ==> 1
- node_22 --> H009 c006 m003 12 1 0.333 2 ==> 1
-
-Tree number 55:
-
-Branch lengths and linkages for tree #55
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 26 root 0 0 0
- 25 26 1 1 1
- 23 25 0 0 2
- 22 23 2 2 2
- 21 22 3 1 3
- 20 21 1 1 2
- 19 20 1 1 1
- 18 19 0 0 1
-H004 c002 m009 (1) 18 0 0 0
- 17 18 0 0 1
- 16 17 2 2 2
-H008 c011 m005 (4) 16 1 0 1
- 15 16 0 0 1
-H014 c002 m003 (10) 15 1 1 1
-H012 c004 m002 (13) 15 0 0 0
-H013 c004 m010 (11) 17 1 0 1
-H007 c015 m028 (12) 19 1 0 1
-H005 c004 m010 (3) 20 1 0 1
-H011 c002 m011 (5) 21 0 0 0
-H003 c004 m018 (9) 22 0 0 2
-H002 c006 m003 (6) 23 2 0 2
-H006 c003 m001 (2) 25 1 1 1
- 24 25 1 1 1
-H010 c013 m002 (7) 24 1 1 1
-H009 c006 m003 (8) 24 1 1 1
-H000 ancetre (14) 26 0 0 0
--------------------------------------------------------------------------
-Sum 21
-
-Tree length = 21
-Consistency index (CI) = 0.6190
-Homoplasy index (HI) = 0.3810
-CI excluding uninformative characters = 0.5789
-HI excluding uninformative characters = 0.4211
-Retention index (RI) = 0.8140
-Rescaled consistency index (RC) = 0.5039
-
- /--------------------- H004 c002 m009
- |
- | /----------- H008 c011 m005
- /---18 |
- | | /---16 /----- H014 c002 m003
- | | | \----15
- | \---17 \----- H012 c004 m002
- /----19 |
- | | \---------------- H013 c004 m010
- | |
- /---20 \-------------------------- H007 c015 m028
- | |
- /---21 \-------------------------------- H005 c004 m010
- | |
- /---22 \------------------------------------- H011 c002 m011
- | |
- /----23 \------------------------------------------ H003 c004 m018
- | |
- | \----------------------------------------------- H002 c006 m003
- |
- /---25----------------------------------------------------- H006 c003 m001
- | |
- | | /----- H010 c013 m002
-----26 \----------------------------------------------24
- | \----- H009 c006 m003
- |
- \---------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_26 --> node_25 13 1 1.000 1 ==> 2
- node_23 --> node_22 1 1 0.500 2 ==> 1
- 2 1 0.500 2 ==> 1
- node_22 --> node_21 6 1 0.500 2 --> 1
- 7 1 0.500 2 --> 1
- 8 1 1.000 2 ==> 1
- node_21 --> node_20 10 1 1.000 2 ==> 1
- node_20 --> node_19 9 1 1.000 2 ==> 1
- node_17 --> node_16 1 1 0.500 1 ==> 2
- 2 1 0.500 1 ==> 2
- node_16 --> H008 c011 m005 12 1 0.333 2 --> 1
- node_15 --> H014 c002 m003 11 1 0.333 2 ==> 1
- node_17 --> H013 c004 m010 12 1 0.333 2 --> 1
- node_19 --> H007 c015 m028 11 1 0.333 2 --> 1
- node_20 --> H005 c004 m010 11 1 0.333 2 --> 1
- node_23 --> H002 c006 m003 6 1 0.500 2 --> 1
- 7 1 0.500 2 --> 1
- node_25 --> H006 c003 m001 5 1 1.000 2 ==> 1
- node_25 --> node_24 3 1 1.000 2 ==> 1
- node_24 --> H010 c013 m002 4 1 1.000 2 ==> 1
- node_24 --> H009 c006 m003 12 1 0.333 2 ==> 1
-
-Tree number 56:
-
-Branch lengths and linkages for tree #56
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 24 root 0 0 0
- 23 24 1 1 1
- 21 23 0 0 2
- 20 21 2 2 2
- 19 20 3 1 3
- 18 19 1 1 2
- 16 18 1 0 1
-H004 c002 m009 (1) 16 0 0 0
- 15 16 2 2 2
-H008 c011 m005 (4) 15 1 1 1
-H014 c002 m003 (10) 15 1 1 1
-H012 c004 m002 (13) 15 0 0 0
-H013 c004 m010 (11) 16 1 1 1
- 17 18 1 1 1
-H005 c004 m010 (3) 17 0 0 1
-H007 c015 m028 (12) 17 1 0 1
-H011 c002 m011 (5) 19 0 0 0
-H003 c004 m018 (9) 20 0 0 2
-H002 c006 m003 (6) 21 2 0 2
-H006 c003 m001 (2) 23 1 1 1
- 22 23 1 1 1
-H010 c013 m002 (7) 22 1 1 1
-H009 c006 m003 (8) 22 1 1 1
-H000 ancetre (14) 24 0 0 0
--------------------------------------------------------------------------
-Sum 21
-
-Tree length = 21
-Consistency index (CI) = 0.6190
-Homoplasy index (HI) = 0.3810
-CI excluding uninformative characters = 0.5789
-HI excluding uninformative characters = 0.4211
-Retention index (RI) = 0.8140
-Rescaled consistency index (RC) = 0.5039
-
- /-------------- H004 c002 m009
- |
- | /------- H008 c011 m005
- | |
- /-----16-----15------- H014 c002 m003
- | | |
- | | \------- H012 c004 m002
- | |
- /-----18 \-------------- H013 c004 m010
- | |
- | | /------- H005 c004 m010
- /-----19 \------------17
- | | \------- H007 c015 m028
- | |
- /-----20 \---------------------------- H011 c002 m011
- | |
- /-----21 \----------------------------------- H003 c004 m018
- | |
- | \------------------------------------------ H002 c006 m003
- |
- /-----23------------------------------------------------- H006 c003 m001
- | |
- | | /------- H010 c013 m002
-------24 \----------------------------------------22
- | \------- H009 c006 m003
- |
- \-------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_24 --> node_23 13 1 1.000 1 ==> 2
- node_21 --> node_20 1 1 0.500 2 ==> 1
- 2 1 0.500 2 ==> 1
- node_20 --> node_19 6 1 0.500 2 --> 1
- 7 1 0.500 2 --> 1
- 8 1 1.000 2 ==> 1
- node_19 --> node_18 10 1 1.000 2 ==> 1
- node_18 --> node_16 9 1 0.500 2 --> 1
- node_16 --> node_15 1 1 0.500 1 ==> 2
- 2 1 0.500 1 ==> 2
- node_15 --> H008 c011 m005 12 1 0.333 2 ==> 1
- node_15 --> H014 c002 m003 11 1 0.500 2 ==> 1
- node_16 --> H013 c004 m010 12 1 0.333 2 ==> 1
- node_18 --> node_17 11 1 0.500 2 ==> 1
- node_17 --> H007 c015 m028 9 1 0.500 2 --> 1
- node_21 --> H002 c006 m003 6 1 0.500 2 --> 1
- 7 1 0.500 2 --> 1
- node_23 --> H006 c003 m001 5 1 1.000 2 ==> 1
- node_23 --> node_22 3 1 1.000 2 ==> 1
- node_22 --> H010 c013 m002 4 1 1.000 2 ==> 1
- node_22 --> H009 c006 m003 12 1 0.333 2 ==> 1
-
-Tree number 57:
-
-Branch lengths and linkages for tree #57
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 25 root 0 0 0
- 24 25 1 1 1
- 22 24 0 0 2
- 21 22 2 2 2
- 20 21 3 1 3
- 19 20 1 1 1
- 18 19 1 1 1
-H004 c002 m009 (1) 18 0 0 0
- 17 18 0 0 1
- 16 17 2 2 2
-H008 c011 m005 (4) 16 1 0 1
- 15 16 0 0 1
-H014 c002 m003 (10) 15 1 1 1
-H012 c004 m002 (13) 15 0 0 0
-H013 c004 m010 (11) 17 1 0 1
-H007 c015 m028 (12) 18 1 1 1
-H005 c004 m010 (3) 19 1 1 1
-H011 c002 m011 (5) 20 0 0 0
-H003 c004 m018 (9) 21 0 0 2
-H002 c006 m003 (6) 22 2 0 2
-H006 c003 m001 (2) 24 1 1 1
- 23 24 1 1 1
-H010 c013 m002 (7) 23 1 1 1
-H009 c006 m003 (8) 23 1 1 1
-H000 ancetre (14) 25 0 0 0
--------------------------------------------------------------------------
-Sum 21
-
-Tree length = 21
-Consistency index (CI) = 0.6190
-Homoplasy index (HI) = 0.3810
-CI excluding uninformative characters = 0.5789
-HI excluding uninformative characters = 0.4211
-Retention index (RI) = 0.8140
-Rescaled consistency index (RC) = 0.5039
-
- /----------------------- H004 c002 m009
- |
- | /----------- H008 c011 m005
- | |
- | /----16 /------ H014 c002 m003
- /----18 | \---15
- | +----17 \------ H012 c004 m002
- | | |
- | | \----------------- H013 c004 m010
- /---19 |
- | | \----------------------- H007 c015 m028
- | |
- /----20 \----------------------------- H005 c004 m010
- | |
- /----21 \---------------------------------- H011 c002 m011
- | |
- /----22 \---------------------------------------- H003 c004 m018
- | |
- | \---------------------------------------------- H002 c006 m003
- |
- /---24---------------------------------------------------- H006 c003 m001
- | |
- | | /------ H010 c013 m002
------25 \--------------------------------------------23
- | \------ H009 c006 m003
- |
- \--------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_25 --> node_24 13 1 1.000 1 ==> 2
- node_22 --> node_21 1 1 0.500 2 ==> 1
- 2 1 0.500 2 ==> 1
- node_21 --> node_20 6 1 0.500 2 --> 1
- 7 1 0.500 2 --> 1
- 8 1 1.000 2 ==> 1
- node_20 --> node_19 10 1 1.000 2 ==> 1
- node_19 --> node_18 9 1 1.000 2 ==> 1
- node_17 --> node_16 1 1 0.500 1 ==> 2
- 2 1 0.500 1 ==> 2
- node_16 --> H008 c011 m005 12 1 0.333 2 --> 1
- node_15 --> H014 c002 m003 11 1 0.333 2 ==> 1
- node_17 --> H013 c004 m010 12 1 0.333 2 --> 1
- node_18 --> H007 c015 m028 11 1 0.333 2 ==> 1
- node_19 --> H005 c004 m010 11 1 0.333 2 ==> 1
- node_22 --> H002 c006 m003 6 1 0.500 2 --> 1
- 7 1 0.500 2 --> 1
- node_24 --> H006 c003 m001 5 1 1.000 2 ==> 1
- node_24 --> node_23 3 1 1.000 2 ==> 1
- node_23 --> H010 c013 m002 4 1 1.000 2 ==> 1
- node_23 --> H009 c006 m003 12 1 0.333 2 ==> 1
-
-Tree number 58:
-
-Branch lengths and linkages for tree #58
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 25 root 0 0 0
- 24 25 1 1 1
- 22 24 0 0 2
- 21 22 2 2 2
- 20 21 3 1 3
- 19 20 1 1 1
- 18 19 1 1 1
-H004 c002 m009 (1) 18 0 0 0
- 17 18 0 0 1
- 16 17 2 2 2
- 15 16 0 0 1
-H008 c011 m005 (4) 15 1 1 1
-H012 c004 m002 (13) 15 0 0 0
-H014 c002 m003 (10) 16 1 0 1
-H007 c015 m028 (12) 17 1 0 1
-H013 c004 m010 (11) 18 1 1 1
-H005 c004 m010 (3) 19 1 1 1
-H011 c002 m011 (5) 20 0 0 0
-H003 c004 m018 (9) 21 0 0 2
-H002 c006 m003 (6) 22 2 0 2
-H006 c003 m001 (2) 24 1 1 1
- 23 24 1 1 1
-H010 c013 m002 (7) 23 1 1 1
-H009 c006 m003 (8) 23 1 1 1
-H000 ancetre (14) 25 0 0 0
--------------------------------------------------------------------------
-Sum 21
-
-Tree length = 21
-Consistency index (CI) = 0.6190
-Homoplasy index (HI) = 0.3810
-CI excluding uninformative characters = 0.5789
-HI excluding uninformative characters = 0.4211
-Retention index (RI) = 0.8140
-Rescaled consistency index (RC) = 0.5039
-
- /----------------------- H004 c002 m009
- |
- | /------ H008 c011 m005
- | /---15
- | | \------ H012 c004 m002
- /----18 /----16
- | | | \----------- H014 c002 m003
- | +----17
- | | \----------------- H007 c015 m028
- /---19 |
- | | \----------------------- H013 c004 m010
- | |
- /----20 \----------------------------- H005 c004 m010
- | |
- /----21 \---------------------------------- H011 c002 m011
- | |
- /----22 \---------------------------------------- H003 c004 m018
- | |
- | \---------------------------------------------- H002 c006 m003
- |
- /---24---------------------------------------------------- H006 c003 m001
- | |
- | | /------ H010 c013 m002
------25 \--------------------------------------------23
- | \------ H009 c006 m003
- |
- \--------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_25 --> node_24 13 1 1.000 1 ==> 2
- node_22 --> node_21 1 1 0.500 2 ==> 1
- 2 1 0.500 2 ==> 1
- node_21 --> node_20 6 1 0.500 2 --> 1
- 7 1 0.500 2 --> 1
- 8 1 1.000 2 ==> 1
- node_20 --> node_19 10 1 1.000 2 ==> 1
- node_19 --> node_18 9 1 1.000 2 ==> 1
- node_17 --> node_16 1 1 0.500 1 ==> 2
- 2 1 0.500 1 ==> 2
- node_15 --> H008 c011 m005 12 1 0.333 2 ==> 1
- node_16 --> H014 c002 m003 11 1 0.333 2 --> 1
- node_17 --> H007 c015 m028 11 1 0.333 2 --> 1
- node_18 --> H013 c004 m010 12 1 0.333 2 ==> 1
- node_19 --> H005 c004 m010 11 1 0.333 2 ==> 1
- node_22 --> H002 c006 m003 6 1 0.500 2 --> 1
- 7 1 0.500 2 --> 1
- node_24 --> H006 c003 m001 5 1 1.000 2 ==> 1
- node_24 --> node_23 3 1 1.000 2 ==> 1
- node_23 --> H010 c013 m002 4 1 1.000 2 ==> 1
- node_23 --> H009 c006 m003 12 1 0.333 2 ==> 1
-
-Tree number 59:
-
-Branch lengths and linkages for tree #59
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 24 root 0 0 0
- 23 24 1 1 1
- 21 23 2 2 2
- 20 21 3 3 3
- 19 20 1 1 1
- 18 19 1 1 1
-H004 c002 m009 (1) 18 0 0 0
- 17 18 0 0 1
- 16 17 2 2 2
-H008 c011 m005 (4) 16 1 0 1
- 15 16 0 0 1
-H014 c002 m003 (10) 15 1 1 1
-H012 c004 m002 (13) 15 0 0 0
-H013 c004 m010 (11) 17 1 0 1
-H007 c015 m028 (12) 18 1 1 1
-H005 c004 m010 (3) 19 1 1 1
-H011 c002 m011 (5) 20 0 0 0
-H003 c004 m018 (9) 21 0 0 0
-H006 c003 m001 (2) 23 1 1 1
-H002 c006 m003 (6) 23 2 2 2
- 22 23 1 1 1
-H010 c013 m002 (7) 22 1 1 1
-H009 c006 m003 (8) 22 1 1 1
-H000 ancetre (14) 24 0 0 0
--------------------------------------------------------------------------
-Sum 21
-
-Tree length = 21
-Consistency index (CI) = 0.6190
-Homoplasy index (HI) = 0.3810
-CI excluding uninformative characters = 0.5789
-HI excluding uninformative characters = 0.4211
-Retention index (RI) = 0.8140
-Rescaled consistency index (RC) = 0.5039
-
- /------------------------- H004 c002 m009
- |
- | /------------- H008 c011 m005
- | |
- | /----16 /------ H014 c002 m003
- /----18 | \-----15
- | +----17 \------ H012 c004 m002
- | | |
- | | \------------------- H013 c004 m010
- /-----19 |
- | | \------------------------- H007 c015 m028
- | |
- /----20 \------------------------------- H005 c004 m010
- | |
- /----21 \-------------------------------------- H011 c002 m011
- | |
- | \-------------------------------------------- H003 c004 m018
- |
- +-------------------------------------------------- H006 c003 m001
- /-----23
- | +-------------------------------------------------- H002 c006 m003
- | |
- | | /------ H010 c013 m002
------24 \------------------------------------------22
- | \------ H009 c006 m003
- |
- \--------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_24 --> node_23 13 1 1.000 1 ==> 2
- node_23 --> node_21 1 1 0.500 2 ==> 1
- 2 1 0.500 2 ==> 1
- node_21 --> node_20 6 1 0.500 2 ==> 1
- 7 1 0.500 2 ==> 1
- 8 1 1.000 2 ==> 1
- node_20 --> node_19 10 1 1.000 2 ==> 1
- node_19 --> node_18 9 1 1.000 2 ==> 1
- node_17 --> node_16 1 1 0.500 1 ==> 2
- 2 1 0.500 1 ==> 2
- node_16 --> H008 c011 m005 12 1 0.333 2 --> 1
- node_15 --> H014 c002 m003 11 1 0.333 2 ==> 1
- node_17 --> H013 c004 m010 12 1 0.333 2 --> 1
- node_18 --> H007 c015 m028 11 1 0.333 2 ==> 1
- node_19 --> H005 c004 m010 11 1 0.333 2 ==> 1
- node_23 --> H006 c003 m001 5 1 1.000 2 ==> 1
- node_23 --> H002 c006 m003 6 1 0.500 2 ==> 1
- 7 1 0.500 2 ==> 1
- node_23 --> node_22 3 1 1.000 2 ==> 1
- node_22 --> H010 c013 m002 4 1 1.000 2 ==> 1
- node_22 --> H009 c006 m003 12 1 0.333 2 ==> 1
-
-Tree number 60:
-
-Branch lengths and linkages for tree #60
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 24 root 0 0 0
- 23 24 1 1 1
- 21 23 2 2 2
- 20 21 3 3 3
- 19 20 1 1 1
- 18 19 1 1 1
-H004 c002 m009 (1) 18 0 0 0
- 17 18 0 0 1
- 16 17 2 2 2
- 15 16 0 0 1
-H008 c011 m005 (4) 15 1 1 1
-H012 c004 m002 (13) 15 0 0 0
-H014 c002 m003 (10) 16 1 0 1
-H007 c015 m028 (12) 17 1 0 1
-H013 c004 m010 (11) 18 1 1 1
-H005 c004 m010 (3) 19 1 1 1
-H011 c002 m011 (5) 20 0 0 0
-H003 c004 m018 (9) 21 0 0 0
-H006 c003 m001 (2) 23 1 1 1
-H002 c006 m003 (6) 23 2 2 2
- 22 23 1 1 1
-H010 c013 m002 (7) 22 1 1 1
-H009 c006 m003 (8) 22 1 1 1
-H000 ancetre (14) 24 0 0 0
--------------------------------------------------------------------------
-Sum 21
-
-Tree length = 21
-Consistency index (CI) = 0.6190
-Homoplasy index (HI) = 0.3810
-CI excluding uninformative characters = 0.5789
-HI excluding uninformative characters = 0.4211
-Retention index (RI) = 0.8140
-Rescaled consistency index (RC) = 0.5039
-
- /------------------------- H004 c002 m009
- |
- | /------ H008 c011 m005
- | /-----15
- | | \------ H012 c004 m002
- /----18 /----16
- | | | \------------- H014 c002 m003
- | +----17
- | | \------------------- H007 c015 m028
- /-----19 |
- | | \------------------------- H013 c004 m010
- | |
- /----20 \------------------------------- H005 c004 m010
- | |
- /----21 \-------------------------------------- H011 c002 m011
- | |
- | \-------------------------------------------- H003 c004 m018
- |
- +-------------------------------------------------- H006 c003 m001
- /-----23
- | +-------------------------------------------------- H002 c006 m003
- | |
- | | /------ H010 c013 m002
------24 \------------------------------------------22
- | \------ H009 c006 m003
- |
- \--------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_24 --> node_23 13 1 1.000 1 ==> 2
- node_23 --> node_21 1 1 0.500 2 ==> 1
- 2 1 0.500 2 ==> 1
- node_21 --> node_20 6 1 0.500 2 ==> 1
- 7 1 0.500 2 ==> 1
- 8 1 1.000 2 ==> 1
- node_20 --> node_19 10 1 1.000 2 ==> 1
- node_19 --> node_18 9 1 1.000 2 ==> 1
- node_17 --> node_16 1 1 0.500 1 ==> 2
- 2 1 0.500 1 ==> 2
- node_15 --> H008 c011 m005 12 1 0.333 2 ==> 1
- node_16 --> H014 c002 m003 11 1 0.333 2 --> 1
- node_17 --> H007 c015 m028 11 1 0.333 2 --> 1
- node_18 --> H013 c004 m010 12 1 0.333 2 ==> 1
- node_19 --> H005 c004 m010 11 1 0.333 2 ==> 1
- node_23 --> H006 c003 m001 5 1 1.000 2 ==> 1
- node_23 --> H002 c006 m003 6 1 0.500 2 ==> 1
- 7 1 0.500 2 ==> 1
- node_23 --> node_22 3 1 1.000 2 ==> 1
- node_22 --> H010 c013 m002 4 1 1.000 2 ==> 1
- node_22 --> H009 c006 m003 12 1 0.333 2 ==> 1
-
-Tree number 61:
-
-Branch lengths and linkages for tree #61
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 26 root 0 0 0
- 25 26 1 1 1
- 23 25 0 0 2
- 22 23 2 2 2
- 21 22 3 1 3
- 20 21 1 1 2
- 19 20 1 1 1
- 18 19 0 0 1
-H004 c002 m009 (1) 18 0 0 0
- 17 18 0 0 1
- 16 17 2 2 2
-H008 c011 m005 (4) 16 1 0 1
- 15 16 0 0 1
-H014 c002 m003 (10) 15 1 1 1
-H012 c004 m002 (13) 15 0 0 0
-H013 c004 m010 (11) 17 1 0 1
-H007 c015 m028 (12) 19 1 0 1
-H005 c004 m010 (3) 20 1 0 1
-H011 c002 m011 (5) 21 0 0 0
-H002 c006 m003 (6) 22 0 0 2
-H003 c004 m018 (9) 23 2 0 2
-H006 c003 m001 (2) 25 1 1 1
- 24 25 1 1 1
-H010 c013 m002 (7) 24 1 1 1
-H009 c006 m003 (8) 24 1 1 1
-H000 ancetre (14) 26 0 0 0
--------------------------------------------------------------------------
-Sum 21
-
-Tree length = 21
-Consistency index (CI) = 0.6190
-Homoplasy index (HI) = 0.3810
-CI excluding uninformative characters = 0.5789
-HI excluding uninformative characters = 0.4211
-Retention index (RI) = 0.8140
-Rescaled consistency index (RC) = 0.5039
-
- /--------------------- H004 c002 m009
- |
- | /----------- H008 c011 m005
- /---18 |
- | | /---16 /----- H014 c002 m003
- | | | \----15
- | \---17 \----- H012 c004 m002
- /----19 |
- | | \---------------- H013 c004 m010
- | |
- /---20 \-------------------------- H007 c015 m028
- | |
- /---21 \-------------------------------- H005 c004 m010
- | |
- /---22 \------------------------------------- H011 c002 m011
- | |
- /----23 \------------------------------------------ H002 c006 m003
- | |
- | \----------------------------------------------- H003 c004 m018
- |
- /---25----------------------------------------------------- H006 c003 m001
- | |
- | | /----- H010 c013 m002
-----26 \----------------------------------------------24
- | \----- H009 c006 m003
- |
- \---------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_26 --> node_25 13 1 1.000 1 ==> 2
- node_23 --> node_22 6 1 1.000 2 ==> 1
- 7 1 1.000 2 ==> 1
- node_22 --> node_21 1 1 0.333 2 --> 1
- 2 1 0.333 2 --> 1
- 8 1 1.000 2 ==> 1
- node_21 --> node_20 10 1 1.000 2 ==> 1
- node_20 --> node_19 9 1 1.000 2 ==> 1
- node_17 --> node_16 1 1 0.333 1 ==> 2
- 2 1 0.333 1 ==> 2
- node_16 --> H008 c011 m005 12 1 0.333 2 --> 1
- node_15 --> H014 c002 m003 11 1 0.333 2 ==> 1
- node_17 --> H013 c004 m010 12 1 0.333 2 --> 1
- node_19 --> H007 c015 m028 11 1 0.333 2 --> 1
- node_20 --> H005 c004 m010 11 1 0.333 2 --> 1
- node_23 --> H003 c004 m018 1 1 0.333 2 --> 1
- 2 1 0.333 2 --> 1
- node_25 --> H006 c003 m001 5 1 1.000 2 ==> 1
- node_25 --> node_24 3 1 1.000 2 ==> 1
- node_24 --> H010 c013 m002 4 1 1.000 2 ==> 1
- node_24 --> H009 c006 m003 12 1 0.333 2 ==> 1
-
-Tree number 62:
-
-Branch lengths and linkages for tree #62
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 26 root 0 0 0
- 25 26 1 1 1
- 23 25 0 0 2
- 22 23 2 2 2
- 21 22 3 1 3
- 20 21 1 1 2
- 18 20 1 0 1
-H004 c002 m009 (1) 18 0 0 0
- 17 18 0 0 1
- 16 17 2 2 2
-H008 c011 m005 (4) 16 1 0 1
- 15 16 0 0 1
-H014 c002 m003 (10) 15 1 1 1
-H012 c004 m002 (13) 15 0 0 0
-H013 c004 m010 (11) 17 1 0 1
- 19 20 1 1 1
-H005 c004 m010 (3) 19 0 0 1
-H007 c015 m028 (12) 19 1 0 1
-H011 c002 m011 (5) 21 0 0 0
-H002 c006 m003 (6) 22 0 0 2
-H003 c004 m018 (9) 23 2 0 2
-H006 c003 m001 (2) 25 1 1 1
- 24 25 1 1 1
-H010 c013 m002 (7) 24 1 1 1
-H009 c006 m003 (8) 24 1 1 1
-H000 ancetre (14) 26 0 0 0
--------------------------------------------------------------------------
-Sum 21
-
-Tree length = 21
-Consistency index (CI) = 0.6190
-Homoplasy index (HI) = 0.3810
-CI excluding uninformative characters = 0.5789
-HI excluding uninformative characters = 0.4211
-Retention index (RI) = 0.8140
-Rescaled consistency index (RC) = 0.5039
-
- /----------------------- H004 c002 m009
- |
- | /----------- H008 c011 m005
- /----18 |
- | | /----16 /------ H014 c002 m003
- | | | \---15
- | \----17 \------ H012 c004 m002
- /---20 |
- | | \----------------- H013 c004 m010
- | |
- | | /------ H005 c004 m010
- /----21 \---------------------19
- | | \------ H007 c015 m028
- | |
- /----22 \---------------------------------- H011 c002 m011
- | |
- /----23 \---------------------------------------- H002 c006 m003
- | |
- | \---------------------------------------------- H003 c004 m018
- |
- /---25---------------------------------------------------- H006 c003 m001
- | |
- | | /------ H010 c013 m002
------26 \--------------------------------------------24
- | \------ H009 c006 m003
- |
- \--------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_26 --> node_25 13 1 1.000 1 ==> 2
- node_23 --> node_22 6 1 1.000 2 ==> 1
- 7 1 1.000 2 ==> 1
- node_22 --> node_21 1 1 0.333 2 --> 1
- 2 1 0.333 2 --> 1
- 8 1 1.000 2 ==> 1
- node_21 --> node_20 10 1 1.000 2 ==> 1
- node_20 --> node_18 9 1 0.500 2 --> 1
- node_17 --> node_16 1 1 0.333 1 ==> 2
- 2 1 0.333 1 ==> 2
- node_16 --> H008 c011 m005 12 1 0.333 2 --> 1
- node_15 --> H014 c002 m003 11 1 0.500 2 ==> 1
- node_17 --> H013 c004 m010 12 1 0.333 2 --> 1
- node_20 --> node_19 11 1 0.500 2 ==> 1
- node_19 --> H007 c015 m028 9 1 0.500 2 --> 1
- node_23 --> H003 c004 m018 1 1 0.333 2 --> 1
- 2 1 0.333 2 --> 1
- node_25 --> H006 c003 m001 5 1 1.000 2 ==> 1
- node_25 --> node_24 3 1 1.000 2 ==> 1
- node_24 --> H010 c013 m002 4 1 1.000 2 ==> 1
- node_24 --> H009 c006 m003 12 1 0.333 2 ==> 1
-
-Tree number 63:
-
-Branch lengths and linkages for tree #63
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 25 root 0 0 0
- 24 25 1 1 1
- 22 24 0 0 2
- 21 22 2 2 2
- 20 21 3 1 3
- 19 20 2 2 2
-H004 c002 m009 (1) 19 0 0 0
- 15 19 1 1 1
-H005 c004 m010 (3) 15 1 1 1
-H007 c015 m028 (12) 15 0 0 0
- 18 19 0 0 1
- 17 18 2 2 2
-H008 c011 m005 (4) 17 1 0 1
- 16 17 0 0 1
-H014 c002 m003 (10) 16 1 1 1
-H012 c004 m002 (13) 16 0 0 0
-H013 c004 m010 (11) 18 1 0 1
-H011 c002 m011 (5) 20 0 0 0
-H002 c006 m003 (6) 21 0 0 2
-H003 c004 m018 (9) 22 2 0 2
-H006 c003 m001 (2) 24 1 1 1
- 23 24 1 1 1
-H010 c013 m002 (7) 23 1 1 1
-H009 c006 m003 (8) 23 1 1 1
-H000 ancetre (14) 25 0 0 0
--------------------------------------------------------------------------
-Sum 21
-
-Tree length = 21
-Consistency index (CI) = 0.6190
-Homoplasy index (HI) = 0.3810
-CI excluding uninformative characters = 0.5789
-HI excluding uninformative characters = 0.4211
-Retention index (RI) = 0.8140
-Rescaled consistency index (RC) = 0.5039
-
- /------------------------- H004 c002 m009
- |
- | /------ H005 c004 m010
- +-----------------15
- | \------ H007 c015 m028
- /----19
- | | /------------- H008 c011 m005
- | | |
- | | /----17 /------ H014 c002 m003
- | | | \-----16
- /-----20 \----18 \------ H012 c004 m002
- | | |
- | | \------------------- H013 c004 m010
- /----21 |
- | | \------------------------------- H011 c002 m011
- | |
- /----22 \-------------------------------------- H002 c006 m003
- | |
- | \-------------------------------------------- H003 c004 m018
- |
- /-----24-------------------------------------------------- H006 c003 m001
- | |
- | | /------ H010 c013 m002
------25 \------------------------------------------23
- | \------ H009 c006 m003
- |
- \--------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_25 --> node_24 13 1 1.000 1 ==> 2
- node_22 --> node_21 6 1 1.000 2 ==> 1
- 7 1 1.000 2 ==> 1
- node_21 --> node_20 1 1 0.333 2 --> 1
- 2 1 0.333 2 --> 1
- 8 1 1.000 2 ==> 1
- node_20 --> node_19 9 1 0.500 2 ==> 1
- 10 1 1.000 2 ==> 1
- node_19 --> node_15 11 1 0.500 2 ==> 1
- node_15 --> H005 c004 m010 9 1 0.500 1 ==> 2
- node_18 --> node_17 1 1 0.333 1 ==> 2
- 2 1 0.333 1 ==> 2
- node_17 --> H008 c011 m005 12 1 0.333 2 --> 1
- node_16 --> H014 c002 m003 11 1 0.500 2 ==> 1
- node_18 --> H013 c004 m010 12 1 0.333 2 --> 1
- node_22 --> H003 c004 m018 1 1 0.333 2 --> 1
- 2 1 0.333 2 --> 1
- node_24 --> H006 c003 m001 5 1 1.000 2 ==> 1
- node_24 --> node_23 3 1 1.000 2 ==> 1
- node_23 --> H010 c013 m002 4 1 1.000 2 ==> 1
- node_23 --> H009 c006 m003 12 1 0.333 2 ==> 1
-
-Tree number 64:
-
-Branch lengths and linkages for tree #64
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 24 root 0 0 0
- 23 24 1 1 1
- 21 23 0 0 2
- 20 21 2 2 2
- 19 20 1 1 3
- 18 19 2 2 2
- 16 18 2 0 2
-H004 c002 m009 (1) 16 0 0 0
- 15 16 1 1 1
-H005 c004 m010 (3) 15 1 1 1
-H007 c015 m028 (12) 15 0 0 0
-H013 c004 m010 (11) 16 1 1 1
- 17 18 0 0 2
-H008 c011 m005 (4) 17 1 1 1
-H014 c002 m003 (10) 17 1 1 1
-H012 c004 m002 (13) 17 0 0 0
-H011 c002 m011 (5) 19 2 0 2
-H002 c006 m003 (6) 20 0 0 2
-H003 c004 m018 (9) 21 2 0 2
-H006 c003 m001 (2) 23 1 1 1
- 22 23 1 1 1
-H010 c013 m002 (7) 22 1 1 1
-H009 c006 m003 (8) 22 1 1 1
-H000 ancetre (14) 24 0 0 0
--------------------------------------------------------------------------
-Sum 21
-
-Tree length = 21
-Consistency index (CI) = 0.6190
-Homoplasy index (HI) = 0.3810
-CI excluding uninformative characters = 0.5789
-HI excluding uninformative characters = 0.4211
-Retention index (RI) = 0.8140
-Rescaled consistency index (RC) = 0.5039
-
- /-------------- H004 c002 m009
- |
- | /------- H005 c004 m010
- /-----16-----15
- | | \------- H007 c015 m028
- | |
- | \-------------- H013 c004 m010
- /-----18
- | | /------- H008 c011 m005
- | | |
- | \------------17------- H014 c002 m003
- /-----19 |
- | | \------- H012 c004 m002
- | |
- /-----20 \---------------------------- H011 c002 m011
- | |
- /-----21 \----------------------------------- H002 c006 m003
- | |
- | \------------------------------------------ H003 c004 m018
- |
- /-----23------------------------------------------------- H006 c003 m001
- | |
- | | /------- H010 c013 m002
-------24 \----------------------------------------22
- | \------- H009 c006 m003
- |
- \-------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_24 --> node_23 13 1 1.000 1 ==> 2
- node_21 --> node_20 6 1 1.000 2 ==> 1
- 7 1 1.000 2 ==> 1
- node_20 --> node_19 8 1 1.000 2 ==> 1
- node_19 --> node_18 9 1 0.500 2 ==> 1
- 10 1 1.000 2 ==> 1
- node_18 --> node_16 1 1 0.333 2 --> 1
- 2 1 0.333 2 --> 1
- node_16 --> node_15 11 1 0.500 2 ==> 1
- node_15 --> H005 c004 m010 9 1 0.500 1 ==> 2
- node_16 --> H013 c004 m010 12 1 0.333 2 ==> 1
- node_17 --> H008 c011 m005 12 1 0.333 2 ==> 1
- node_17 --> H014 c002 m003 11 1 0.500 2 ==> 1
- node_19 --> H011 c002 m011 1 1 0.333 2 --> 1
- 2 1 0.333 2 --> 1
- node_21 --> H003 c004 m018 1 1 0.333 2 --> 1
- 2 1 0.333 2 --> 1
- node_23 --> H006 c003 m001 5 1 1.000 2 ==> 1
- node_23 --> node_22 3 1 1.000 2 ==> 1
- node_22 --> H010 c013 m002 4 1 1.000 2 ==> 1
- node_22 --> H009 c006 m003 12 1 0.333 2 ==> 1
-
-Tree number 65:
-
-Branch lengths and linkages for tree #65
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 24 root 0 0 0
- 23 24 1 1 1
- 21 23 0 0 2
- 20 21 2 2 2
- 19 20 3 1 3
- 18 19 2 2 2
-H004 c002 m009 (1) 18 0 0 0
- 17 18 1 1 1
-H005 c004 m010 (3) 17 1 1 1
- 16 17 2 2 2
- 15 16 1 1 1
-H008 c011 m005 (4) 15 1 1 1
-H012 c004 m002 (13) 15 0 0 0
-H014 c002 m003 (10) 16 0 0 0
-H007 c015 m028 (12) 17 0 0 0
-H013 c004 m010 (11) 18 1 1 1
-H011 c002 m011 (5) 19 0 0 0
-H002 c006 m003 (6) 20 0 0 2
-H003 c004 m018 (9) 21 2 0 2
-H006 c003 m001 (2) 23 1 1 1
- 22 23 1 1 1
-H010 c013 m002 (7) 22 1 1 1
-H009 c006 m003 (8) 22 1 1 1
-H000 ancetre (14) 24 0 0 0
--------------------------------------------------------------------------
-Sum 21
-
-Tree length = 21
-Consistency index (CI) = 0.6190
-Homoplasy index (HI) = 0.3810
-CI excluding uninformative characters = 0.5789
-HI excluding uninformative characters = 0.4211
-Retention index (RI) = 0.8140
-Rescaled consistency index (RC) = 0.5039
-
- /------------------------- H004 c002 m009
- |
- | /------------------- H005 c004 m010
- | |
- | | /------ H008 c011 m005
- | | /-----15
- /----18----17 | \------ H012 c004 m002
- | | +----16
- | | | \------------- H014 c002 m003
- | | |
- /-----19 | \------------------- H007 c015 m028
- | | |
- | | \------------------------- H013 c004 m010
- /----20 |
- | | \------------------------------- H011 c002 m011
- | |
- /----21 \-------------------------------------- H002 c006 m003
- | |
- | \-------------------------------------------- H003 c004 m018
- |
- /-----23-------------------------------------------------- H006 c003 m001
- | |
- | | /------ H010 c013 m002
------24 \------------------------------------------22
- | \------ H009 c006 m003
- |
- \--------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_24 --> node_23 13 1 1.000 1 ==> 2
- node_21 --> node_20 6 1 1.000 2 ==> 1
- 7 1 1.000 2 ==> 1
- node_20 --> node_19 1 1 0.333 2 --> 1
- 2 1 0.333 2 --> 1
- 8 1 1.000 2 ==> 1
- node_19 --> node_18 9 1 0.500 2 ==> 1
- 10 1 1.000 2 ==> 1
- node_18 --> node_17 11 1 0.500 2 ==> 1
- node_17 --> H005 c004 m010 9 1 0.500 1 ==> 2
- node_17 --> node_16 1 1 0.333 1 ==> 2
- 2 1 0.333 1 ==> 2
- node_16 --> node_15 11 1 0.500 1 ==> 2
- node_15 --> H008 c011 m005 12 1 0.333 2 ==> 1
- node_18 --> H013 c004 m010 12 1 0.333 2 ==> 1
- node_21 --> H003 c004 m018 1 1 0.333 2 --> 1
- 2 1 0.333 2 --> 1
- node_23 --> H006 c003 m001 5 1 1.000 2 ==> 1
- node_23 --> node_22 3 1 1.000 2 ==> 1
- node_22 --> H010 c013 m002 4 1 1.000 2 ==> 1
- node_22 --> H009 c006 m003 12 1 0.333 2 ==> 1
-
-Tree number 66:
-
-Branch lengths and linkages for tree #66
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 25 root 0 0 0
- 24 25 1 1 1
- 22 24 0 0 2
- 21 22 2 2 2
- 20 21 3 1 3
- 19 20 2 2 2
-H004 c002 m009 (1) 19 0 0 0
- 18 19 0 0 1
- 15 18 1 0 1
-H005 c004 m010 (3) 15 1 1 1
-H007 c015 m028 (12) 15 0 0 0
- 17 18 2 2 2
- 16 17 0 0 1
-H008 c011 m005 (4) 16 1 1 1
-H012 c004 m002 (13) 16 0 0 0
-H014 c002 m003 (10) 17 1 0 1
-H013 c004 m010 (11) 19 1 1 1
-H011 c002 m011 (5) 20 0 0 0
-H002 c006 m003 (6) 21 0 0 2
-H003 c004 m018 (9) 22 2 0 2
-H006 c003 m001 (2) 24 1 1 1
- 23 24 1 1 1
-H010 c013 m002 (7) 23 1 1 1
-H009 c006 m003 (8) 23 1 1 1
-H000 ancetre (14) 25 0 0 0
--------------------------------------------------------------------------
-Sum 21
-
-Tree length = 21
-Consistency index (CI) = 0.6190
-Homoplasy index (HI) = 0.3810
-CI excluding uninformative characters = 0.5789
-HI excluding uninformative characters = 0.4211
-Retention index (RI) = 0.8140
-Rescaled consistency index (RC) = 0.5039
-
- /------------------------- H004 c002 m009
- |
- | /------ H005 c004 m010
- | /-----------15
- | | \------ H007 c015 m028
- | |
- /----19----18 /------ H008 c011 m005
- | | | /-----16
- | | | | \------ H012 c004 m002
- | | \----17
- /-----20 | \------------- H014 c002 m003
- | | |
- | | \------------------------- H013 c004 m010
- /----21 |
- | | \------------------------------- H011 c002 m011
- | |
- /----22 \-------------------------------------- H002 c006 m003
- | |
- | \-------------------------------------------- H003 c004 m018
- |
- /-----24-------------------------------------------------- H006 c003 m001
- | |
- | | /------ H010 c013 m002
------25 \------------------------------------------23
- | \------ H009 c006 m003
- |
- \--------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_25 --> node_24 13 1 1.000 1 ==> 2
- node_22 --> node_21 6 1 1.000 2 ==> 1
- 7 1 1.000 2 ==> 1
- node_21 --> node_20 1 1 0.333 2 --> 1
- 2 1 0.333 2 --> 1
- 8 1 1.000 2 ==> 1
- node_20 --> node_19 9 1 0.500 2 ==> 1
- 10 1 1.000 2 ==> 1
- node_18 --> node_15 11 1 0.500 2 --> 1
- node_15 --> H005 c004 m010 9 1 0.500 1 ==> 2
- node_18 --> node_17 1 1 0.333 1 ==> 2
- 2 1 0.333 1 ==> 2
- node_16 --> H008 c011 m005 12 1 0.333 2 ==> 1
- node_17 --> H014 c002 m003 11 1 0.500 2 --> 1
- node_19 --> H013 c004 m010 12 1 0.333 2 ==> 1
- node_22 --> H003 c004 m018 1 1 0.333 2 --> 1
- 2 1 0.333 2 --> 1
- node_24 --> H006 c003 m001 5 1 1.000 2 ==> 1
- node_24 --> node_23 3 1 1.000 2 ==> 1
- node_23 --> H010 c013 m002 4 1 1.000 2 ==> 1
- node_23 --> H009 c006 m003 12 1 0.333 2 ==> 1
-
-Tree number 67:
-
-Branch lengths and linkages for tree #67
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 26 root 0 0 0
- 25 26 1 1 1
- 23 25 0 0 2
- 22 23 2 2 2
- 21 22 3 1 3
- 20 21 1 1 2
- 19 20 1 1 1
- 15 19 0 0 1
-H004 c002 m009 (1) 15 0 0 0
-H013 c004 m010 (11) 15 1 1 1
- 18 19 0 0 1
- 17 18 2 2 2
- 16 17 0 0 1
-H008 c011 m005 (4) 16 1 1 1
-H012 c004 m002 (13) 16 0 0 0
-H014 c002 m003 (10) 17 1 0 1
-H007 c015 m028 (12) 18 1 0 1
-H005 c004 m010 (3) 20 1 0 1
-H011 c002 m011 (5) 21 0 0 0
-H002 c006 m003 (6) 22 0 0 2
-H003 c004 m018 (9) 23 2 0 2
-H006 c003 m001 (2) 25 1 1 1
- 24 25 1 1 1
-H010 c013 m002 (7) 24 1 1 1
-H009 c006 m003 (8) 24 1 1 1
-H000 ancetre (14) 26 0 0 0
--------------------------------------------------------------------------
-Sum 21
-
-Tree length = 21
-Consistency index (CI) = 0.6190
-Homoplasy index (HI) = 0.3810
-CI excluding uninformative characters = 0.5789
-HI excluding uninformative characters = 0.4211
-Retention index (RI) = 0.8140
-Rescaled consistency index (RC) = 0.5039
-
- /------ H004 c002 m009
- /---------------15
- | \------ H013 c004 m010
- |
- | /------ H008 c011 m005
- /----19 /---16
- | | | \------ H012 c004 m002
- | | /----17
- | | | \----------- H014 c002 m003
- /---20 \----18
- | | \----------------- H007 c015 m028
- | |
- /----21 \----------------------------- H005 c004 m010
- | |
- /----22 \---------------------------------- H011 c002 m011
- | |
- /----23 \---------------------------------------- H002 c006 m003
- | |
- | \---------------------------------------------- H003 c004 m018
- |
- /---25---------------------------------------------------- H006 c003 m001
- | |
- | | /------ H010 c013 m002
------26 \--------------------------------------------24
- | \------ H009 c006 m003
- |
- \--------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_26 --> node_25 13 1 1.000 1 ==> 2
- node_23 --> node_22 6 1 1.000 2 ==> 1
- 7 1 1.000 2 ==> 1
- node_22 --> node_21 1 1 0.333 2 --> 1
- 2 1 0.333 2 --> 1
- 8 1 1.000 2 ==> 1
- node_21 --> node_20 10 1 1.000 2 ==> 1
- node_20 --> node_19 9 1 1.000 2 ==> 1
- node_15 --> H013 c004 m010 12 1 0.333 2 ==> 1
- node_18 --> node_17 1 1 0.333 1 ==> 2
- 2 1 0.333 1 ==> 2
- node_16 --> H008 c011 m005 12 1 0.333 2 ==> 1
- node_17 --> H014 c002 m003 11 1 0.333 2 --> 1
- node_18 --> H007 c015 m028 11 1 0.333 2 --> 1
- node_20 --> H005 c004 m010 11 1 0.333 2 --> 1
- node_23 --> H003 c004 m018 1 1 0.333 2 --> 1
- 2 1 0.333 2 --> 1
- node_25 --> H006 c003 m001 5 1 1.000 2 ==> 1
- node_25 --> node_24 3 1 1.000 2 ==> 1
- node_24 --> H010 c013 m002 4 1 1.000 2 ==> 1
- node_24 --> H009 c006 m003 12 1 0.333 2 ==> 1
-
-Tree number 68:
-
-Branch lengths and linkages for tree #68
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 26 root 0 0 0
- 25 26 1 1 1
- 23 25 0 0 2
- 22 23 2 2 2
- 21 22 3 1 3
- 20 21 1 1 2
- 15 20 1 0 1
-H004 c002 m009 (1) 15 0 0 0
-H013 c004 m010 (11) 15 1 1 1
- 19 20 1 1 1
-H005 c004 m010 (3) 19 0 0 1
- 18 19 1 0 1
- 17 18 2 2 2
- 16 17 1 1 1
-H008 c011 m005 (4) 16 1 1 1
-H012 c004 m002 (13) 16 0 0 0
-H014 c002 m003 (10) 17 0 0 0
-H007 c015 m028 (12) 18 0 0 0
-H011 c002 m011 (5) 21 0 0 0
-H002 c006 m003 (6) 22 0 0 2
-H003 c004 m018 (9) 23 2 0 2
-H006 c003 m001 (2) 25 1 1 1
- 24 25 1 1 1
-H010 c013 m002 (7) 24 1 1 1
-H009 c006 m003 (8) 24 1 1 1
-H000 ancetre (14) 26 0 0 0
--------------------------------------------------------------------------
-Sum 21
-
-Tree length = 21
-Consistency index (CI) = 0.6190
-Homoplasy index (HI) = 0.3810
-CI excluding uninformative characters = 0.5789
-HI excluding uninformative characters = 0.4211
-Retention index (RI) = 0.8140
-Rescaled consistency index (RC) = 0.5039
-
- /------ H004 c002 m009
- /---------------------15
- | \------ H013 c004 m010
- |
- | /----------------------- H005 c004 m010
- /---20 |
- | | | /------ H008 c011 m005
- | | | /---16
- | \----19 | \------ H012 c004 m002
- | | /----17
- /----21 | | \----------- H014 c002 m003
- | | \----18
- | | \----------------- H007 c015 m028
- /----22 |
- | | \---------------------------------- H011 c002 m011
- | |
- /----23 \---------------------------------------- H002 c006 m003
- | |
- | \---------------------------------------------- H003 c004 m018
- |
- /---25---------------------------------------------------- H006 c003 m001
- | |
- | | /------ H010 c013 m002
------26 \--------------------------------------------24
- | \------ H009 c006 m003
- |
- \--------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_26 --> node_25 13 1 1.000 1 ==> 2
- node_23 --> node_22 6 1 1.000 2 ==> 1
- 7 1 1.000 2 ==> 1
- node_22 --> node_21 1 1 0.333 2 --> 1
- 2 1 0.333 2 --> 1
- 8 1 1.000 2 ==> 1
- node_21 --> node_20 10 1 1.000 2 ==> 1
- node_20 --> node_15 9 1 0.500 2 --> 1
- node_15 --> H013 c004 m010 12 1 0.333 2 ==> 1
- node_20 --> node_19 11 1 0.500 2 ==> 1
- node_19 --> node_18 9 1 0.500 2 --> 1
- node_18 --> node_17 1 1 0.333 1 ==> 2
- 2 1 0.333 1 ==> 2
- node_17 --> node_16 11 1 0.500 1 ==> 2
- node_16 --> H008 c011 m005 12 1 0.333 2 ==> 1
- node_23 --> H003 c004 m018 1 1 0.333 2 --> 1
- 2 1 0.333 2 --> 1
- node_25 --> H006 c003 m001 5 1 1.000 2 ==> 1
- node_25 --> node_24 3 1 1.000 2 ==> 1
- node_24 --> H010 c013 m002 4 1 1.000 2 ==> 1
- node_24 --> H009 c006 m003 12 1 0.333 2 ==> 1
-
-Tree number 69:
-
-Branch lengths and linkages for tree #69
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 26 root 0 0 0
- 25 26 1 1 1
- 23 25 0 0 2
- 22 23 2 2 2
- 21 22 3 1 3
- 20 21 1 1 2
- 19 20 1 1 1
- 15 19 0 0 1
-H004 c002 m009 (1) 15 0 0 0
-H013 c004 m010 (11) 15 1 1 1
- 18 19 0 0 1
- 17 18 2 2 2
- 16 17 0 0 1
-H008 c011 m005 (4) 16 1 1 1
-H012 c004 m002 (13) 16 0 0 0
-H014 c002 m003 (10) 17 1 0 1
-H007 c015 m028 (12) 18 1 0 1
-H005 c004 m010 (3) 20 1 0 1
-H011 c002 m011 (5) 21 0 0 0
-H003 c004 m018 (9) 22 0 0 2
-H002 c006 m003 (6) 23 2 0 2
-H006 c003 m001 (2) 25 1 1 1
- 24 25 1 1 1
-H010 c013 m002 (7) 24 1 1 1
-H009 c006 m003 (8) 24 1 1 1
-H000 ancetre (14) 26 0 0 0
--------------------------------------------------------------------------
-Sum 21
-
-Tree length = 21
-Consistency index (CI) = 0.6190
-Homoplasy index (HI) = 0.3810
-CI excluding uninformative characters = 0.5789
-HI excluding uninformative characters = 0.4211
-Retention index (RI) = 0.8140
-Rescaled consistency index (RC) = 0.5039
-
- /------ H004 c002 m009
- /---------------15
- | \------ H013 c004 m010
- |
- | /------ H008 c011 m005
- /----19 /---16
- | | | \------ H012 c004 m002
- | | /----17
- | | | \----------- H014 c002 m003
- /---20 \----18
- | | \----------------- H007 c015 m028
- | |
- /----21 \----------------------------- H005 c004 m010
- | |
- /----22 \---------------------------------- H011 c002 m011
- | |
- /----23 \---------------------------------------- H003 c004 m018
- | |
- | \---------------------------------------------- H002 c006 m003
- |
- /---25---------------------------------------------------- H006 c003 m001
- | |
- | | /------ H010 c013 m002
------26 \--------------------------------------------24
- | \------ H009 c006 m003
- |
- \--------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_26 --> node_25 13 1 1.000 1 ==> 2
- node_23 --> node_22 1 1 0.500 2 ==> 1
- 2 1 0.500 2 ==> 1
- node_22 --> node_21 6 1 0.500 2 --> 1
- 7 1 0.500 2 --> 1
- 8 1 1.000 2 ==> 1
- node_21 --> node_20 10 1 1.000 2 ==> 1
- node_20 --> node_19 9 1 1.000 2 ==> 1
- node_15 --> H013 c004 m010 12 1 0.333 2 ==> 1
- node_18 --> node_17 1 1 0.500 1 ==> 2
- 2 1 0.500 1 ==> 2
- node_16 --> H008 c011 m005 12 1 0.333 2 ==> 1
- node_17 --> H014 c002 m003 11 1 0.333 2 --> 1
- node_18 --> H007 c015 m028 11 1 0.333 2 --> 1
- node_20 --> H005 c004 m010 11 1 0.333 2 --> 1
- node_23 --> H002 c006 m003 6 1 0.500 2 --> 1
- 7 1 0.500 2 --> 1
- node_25 --> H006 c003 m001 5 1 1.000 2 ==> 1
- node_25 --> node_24 3 1 1.000 2 ==> 1
- node_24 --> H010 c013 m002 4 1 1.000 2 ==> 1
- node_24 --> H009 c006 m003 12 1 0.333 2 ==> 1
-
-Tree number 70:
-
-Branch lengths and linkages for tree #70
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 24 root 0 0 0
- 23 24 1 1 1
- 21 23 2 2 2
- 20 21 3 3 3
- 19 20 1 1 1
- 18 19 1 1 1
-H004 c002 m009 (1) 18 0 0 0
- 17 18 0 0 1
- 16 17 2 2 2
-H008 c011 m005 (4) 16 1 0 1
- 15 16 0 0 1
-H014 c002 m003 (10) 15 1 1 1
-H012 c004 m002 (13) 15 0 0 0
-H013 c004 m010 (11) 17 1 0 1
-H007 c015 m028 (12) 18 1 1 1
-H005 c004 m010 (3) 19 1 1 1
-H011 c002 m011 (5) 20 0 0 0
-H002 c006 m003 (6) 21 0 0 0
-H006 c003 m001 (2) 23 1 1 1
- 22 23 1 1 1
-H010 c013 m002 (7) 22 1 1 1
-H009 c006 m003 (8) 22 1 1 1
-H003 c004 m018 (9) 23 2 2 2
-H000 ancetre (14) 24 0 0 0
--------------------------------------------------------------------------
-Sum 21
-
-Tree length = 21
-Consistency index (CI) = 0.6190
-Homoplasy index (HI) = 0.3810
-CI excluding uninformative characters = 0.5789
-HI excluding uninformative characters = 0.4211
-Retention index (RI) = 0.8140
-Rescaled consistency index (RC) = 0.5039
-
- /------------------------- H004 c002 m009
- |
- | /------------- H008 c011 m005
- | |
- | /----16 /------ H014 c002 m003
- /----18 | \-----15
- | +----17 \------ H012 c004 m002
- | | |
- | | \------------------- H013 c004 m010
- /-----19 |
- | | \------------------------- H007 c015 m028
- | |
- /----20 \------------------------------- H005 c004 m010
- | |
- /----21 \-------------------------------------- H011 c002 m011
- | |
- | \-------------------------------------------- H002 c006 m003
- |
- +-------------------------------------------------- H006 c003 m001
- /-----23
- | | /------ H010 c013 m002
- | +------------------------------------------22
- | | \------ H009 c006 m003
------24 |
- | \-------------------------------------------------- H003 c004 m018
- |
- \--------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_24 --> node_23 13 1 1.000 1 ==> 2
- node_23 --> node_21 6 1 1.000 2 ==> 1
- 7 1 1.000 2 ==> 1
- node_21 --> node_20 1 1 0.333 2 ==> 1
- 2 1 0.333 2 ==> 1
- 8 1 1.000 2 ==> 1
- node_20 --> node_19 10 1 1.000 2 ==> 1
- node_19 --> node_18 9 1 1.000 2 ==> 1
- node_17 --> node_16 1 1 0.333 1 ==> 2
- 2 1 0.333 1 ==> 2
- node_16 --> H008 c011 m005 12 1 0.333 2 --> 1
- node_15 --> H014 c002 m003 11 1 0.333 2 ==> 1
- node_17 --> H013 c004 m010 12 1 0.333 2 --> 1
- node_18 --> H007 c015 m028 11 1 0.333 2 ==> 1
- node_19 --> H005 c004 m010 11 1 0.333 2 ==> 1
- node_23 --> H006 c003 m001 5 1 1.000 2 ==> 1
- node_23 --> node_22 3 1 1.000 2 ==> 1
- node_22 --> H010 c013 m002 4 1 1.000 2 ==> 1
- node_22 --> H009 c006 m003 12 1 0.333 2 ==> 1
- node_23 --> H003 c004 m018 1 1 0.333 2 ==> 1
- 2 1 0.333 2 ==> 1
-
-Tree number 71:
-
-Branch lengths and linkages for tree #71
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 26 root 0 0 0
- 25 26 1 1 1
- 23 25 0 0 2
- 22 23 2 2 2
- 21 22 3 1 3
- 20 21 1 1 2
- 19 20 1 1 1
- 18 19 0 0 1
- 15 18 0 0 1
-H004 c002 m009 (1) 15 0 0 0
-H013 c004 m010 (11) 15 1 1 1
- 17 18 2 2 2
- 16 17 0 0 1
-H008 c011 m005 (4) 16 1 1 1
-H012 c004 m002 (13) 16 0 0 0
-H014 c002 m003 (10) 17 1 0 1
-H007 c015 m028 (12) 19 1 0 1
-H005 c004 m010 (3) 20 1 0 1
-H011 c002 m011 (5) 21 0 0 0
-H003 c004 m018 (9) 22 0 0 2
-H002 c006 m003 (6) 23 2 0 2
-H006 c003 m001 (2) 25 1 1 1
- 24 25 1 1 1
-H010 c013 m002 (7) 24 1 1 1
-H009 c006 m003 (8) 24 1 1 1
-H000 ancetre (14) 26 0 0 0
--------------------------------------------------------------------------
-Sum 21
-
-Tree length = 21
-Consistency index (CI) = 0.6190
-Homoplasy index (HI) = 0.3810
-CI excluding uninformative characters = 0.5789
-HI excluding uninformative characters = 0.4211
-Retention index (RI) = 0.8140
-Rescaled consistency index (RC) = 0.5039
-
- /------ H004 c002 m009
- /---------15
- | \------ H013 c004 m010
- |
- /----18 /------ H008 c011 m005
- | | /---16
- | | | \------ H012 c004 m002
- /----19 \----17
- | | \----------- H014 c002 m003
- | |
- /---20 \----------------------- H007 c015 m028
- | |
- /----21 \----------------------------- H005 c004 m010
- | |
- /----22 \---------------------------------- H011 c002 m011
- | |
- /----23 \---------------------------------------- H003 c004 m018
- | |
- | \---------------------------------------------- H002 c006 m003
- |
- /---25---------------------------------------------------- H006 c003 m001
- | |
- | | /------ H010 c013 m002
------26 \--------------------------------------------24
- | \------ H009 c006 m003
- |
- \--------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_26 --> node_25 13 1 1.000 1 ==> 2
- node_23 --> node_22 1 1 0.500 2 ==> 1
- 2 1 0.500 2 ==> 1
- node_22 --> node_21 6 1 0.500 2 --> 1
- 7 1 0.500 2 --> 1
- 8 1 1.000 2 ==> 1
- node_21 --> node_20 10 1 1.000 2 ==> 1
- node_20 --> node_19 9 1 1.000 2 ==> 1
- node_15 --> H013 c004 m010 12 1 0.333 2 ==> 1
- node_18 --> node_17 1 1 0.500 1 ==> 2
- 2 1 0.500 1 ==> 2
- node_16 --> H008 c011 m005 12 1 0.333 2 ==> 1
- node_17 --> H014 c002 m003 11 1 0.333 2 --> 1
- node_19 --> H007 c015 m028 11 1 0.333 2 --> 1
- node_20 --> H005 c004 m010 11 1 0.333 2 --> 1
- node_23 --> H002 c006 m003 6 1 0.500 2 --> 1
- 7 1 0.500 2 --> 1
- node_25 --> H006 c003 m001 5 1 1.000 2 ==> 1
- node_25 --> node_24 3 1 1.000 2 ==> 1
- node_24 --> H010 c013 m002 4 1 1.000 2 ==> 1
- node_24 --> H009 c006 m003 12 1 0.333 2 ==> 1
-
-Tree number 72:
-
-Branch lengths and linkages for tree #72
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 24 root 0 0 0
- 23 24 1 1 1
- 21 23 2 2 2
- 20 21 3 3 3
- 19 20 1 1 1
- 18 19 1 1 1
-H004 c002 m009 (1) 18 0 0 0
- 17 18 0 0 1
- 16 17 2 2 2
- 15 16 0 0 1
-H008 c011 m005 (4) 15 1 1 1
-H012 c004 m002 (13) 15 0 0 0
-H014 c002 m003 (10) 16 1 0 1
-H007 c015 m028 (12) 17 1 0 1
-H013 c004 m010 (11) 18 1 1 1
-H005 c004 m010 (3) 19 1 1 1
-H011 c002 m011 (5) 20 0 0 0
-H002 c006 m003 (6) 21 0 0 0
-H006 c003 m001 (2) 23 1 1 1
- 22 23 1 1 1
-H010 c013 m002 (7) 22 1 1 1
-H009 c006 m003 (8) 22 1 1 1
-H003 c004 m018 (9) 23 2 2 2
-H000 ancetre (14) 24 0 0 0
--------------------------------------------------------------------------
-Sum 21
-
-Tree length = 21
-Consistency index (CI) = 0.6190
-Homoplasy index (HI) = 0.3810
-CI excluding uninformative characters = 0.5789
-HI excluding uninformative characters = 0.4211
-Retention index (RI) = 0.8140
-Rescaled consistency index (RC) = 0.5039
-
- /------------------------- H004 c002 m009
- |
- | /------ H008 c011 m005
- | /-----15
- | | \------ H012 c004 m002
- /----18 /----16
- | | | \------------- H014 c002 m003
- | +----17
- | | \------------------- H007 c015 m028
- /-----19 |
- | | \------------------------- H013 c004 m010
- | |
- /----20 \------------------------------- H005 c004 m010
- | |
- /----21 \-------------------------------------- H011 c002 m011
- | |
- | \-------------------------------------------- H002 c006 m003
- |
- +-------------------------------------------------- H006 c003 m001
- /-----23
- | | /------ H010 c013 m002
- | +------------------------------------------22
- | | \------ H009 c006 m003
------24 |
- | \-------------------------------------------------- H003 c004 m018
- |
- \--------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_24 --> node_23 13 1 1.000 1 ==> 2
- node_23 --> node_21 6 1 1.000 2 ==> 1
- 7 1 1.000 2 ==> 1
- node_21 --> node_20 1 1 0.333 2 ==> 1
- 2 1 0.333 2 ==> 1
- 8 1 1.000 2 ==> 1
- node_20 --> node_19 10 1 1.000 2 ==> 1
- node_19 --> node_18 9 1 1.000 2 ==> 1
- node_17 --> node_16 1 1 0.333 1 ==> 2
- 2 1 0.333 1 ==> 2
- node_15 --> H008 c011 m005 12 1 0.333 2 ==> 1
- node_16 --> H014 c002 m003 11 1 0.333 2 --> 1
- node_17 --> H007 c015 m028 11 1 0.333 2 --> 1
- node_18 --> H013 c004 m010 12 1 0.333 2 ==> 1
- node_19 --> H005 c004 m010 11 1 0.333 2 ==> 1
- node_23 --> H006 c003 m001 5 1 1.000 2 ==> 1
- node_23 --> node_22 3 1 1.000 2 ==> 1
- node_22 --> H010 c013 m002 4 1 1.000 2 ==> 1
- node_22 --> H009 c006 m003 12 1 0.333 2 ==> 1
- node_23 --> H003 c004 m018 1 1 0.333 2 ==> 1
- 2 1 0.333 2 ==> 1
-
-Tree number 73:
-
-Branch lengths and linkages for tree #73
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 24 root 0 0 0
- 23 24 1 1 1
- 21 23 2 2 2
- 20 21 3 3 3
- 19 20 2 2 2
-H004 c002 m009 (1) 19 0 0 0
- 15 19 1 1 1
-H005 c004 m010 (3) 15 1 1 1
-H007 c015 m028 (12) 15 0 0 0
- 18 19 0 0 1
- 17 18 2 2 2
-H008 c011 m005 (4) 17 1 0 1
- 16 17 0 0 1
-H014 c002 m003 (10) 16 1 1 1
-H012 c004 m002 (13) 16 0 0 0
-H013 c004 m010 (11) 18 1 0 1
-H011 c002 m011 (5) 20 0 0 0
-H002 c006 m003 (6) 21 0 0 0
-H006 c003 m001 (2) 23 1 1 1
- 22 23 1 1 1
-H010 c013 m002 (7) 22 1 1 1
-H009 c006 m003 (8) 22 1 1 1
-H003 c004 m018 (9) 23 2 2 2
-H000 ancetre (14) 24 0 0 0
--------------------------------------------------------------------------
-Sum 21
-
-Tree length = 21
-Consistency index (CI) = 0.6190
-Homoplasy index (HI) = 0.3810
-CI excluding uninformative characters = 0.5789
-HI excluding uninformative characters = 0.4211
-Retention index (RI) = 0.8140
-Rescaled consistency index (RC) = 0.5039
-
- /---------------------------- H004 c002 m009
- |
- | /------- H005 c004 m010
- +-------------------15
- | \------- H007 c015 m028
- /-----19
- | | /-------------- H008 c011 m005
- | | |
- | | /-----17 /------- H014 c002 m003
- | | | \-----16
- /-----20 \-----18 \------- H012 c004 m002
- | | |
- | | \--------------------- H013 c004 m010
- /-----21 |
- | | \----------------------------------- H011 c002 m011
- | |
- | \------------------------------------------ H002 c006 m003
- |
- +------------------------------------------------- H006 c003 m001
- /-----23
- | | /------- H010 c013 m002
- | +----------------------------------------22
- | | \------- H009 c006 m003
-------24 |
- | \------------------------------------------------- H003 c004 m018
- |
- \-------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_24 --> node_23 13 1 1.000 1 ==> 2
- node_23 --> node_21 6 1 1.000 2 ==> 1
- 7 1 1.000 2 ==> 1
- node_21 --> node_20 1 1 0.333 2 ==> 1
- 2 1 0.333 2 ==> 1
- 8 1 1.000 2 ==> 1
- node_20 --> node_19 9 1 0.500 2 ==> 1
- 10 1 1.000 2 ==> 1
- node_19 --> node_15 11 1 0.500 2 ==> 1
- node_15 --> H005 c004 m010 9 1 0.500 1 ==> 2
- node_18 --> node_17 1 1 0.333 1 ==> 2
- 2 1 0.333 1 ==> 2
- node_17 --> H008 c011 m005 12 1 0.333 2 --> 1
- node_16 --> H014 c002 m003 11 1 0.500 2 ==> 1
- node_18 --> H013 c004 m010 12 1 0.333 2 --> 1
- node_23 --> H006 c003 m001 5 1 1.000 2 ==> 1
- node_23 --> node_22 3 1 1.000 2 ==> 1
- node_22 --> H010 c013 m002 4 1 1.000 2 ==> 1
- node_22 --> H009 c006 m003 12 1 0.333 2 ==> 1
- node_23 --> H003 c004 m018 1 1 0.333 2 ==> 1
- 2 1 0.333 2 ==> 1
-
-Tree number 74:
-
-Branch lengths and linkages for tree #74
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 24 root 0 0 0
- 23 24 1 1 1
- 21 23 2 2 2
- 20 21 3 3 3
- 19 20 2 2 2
-H004 c002 m009 (1) 19 0 0 0
- 18 19 0 0 1
- 15 18 1 0 1
-H005 c004 m010 (3) 15 1 1 1
-H007 c015 m028 (12) 15 0 0 0
- 17 18 2 2 2
- 16 17 0 0 1
-H008 c011 m005 (4) 16 1 1 1
-H012 c004 m002 (13) 16 0 0 0
-H014 c002 m003 (10) 17 1 0 1
-H013 c004 m010 (11) 19 1 1 1
-H011 c002 m011 (5) 20 0 0 0
-H002 c006 m003 (6) 21 0 0 0
-H006 c003 m001 (2) 23 1 1 1
- 22 23 1 1 1
-H010 c013 m002 (7) 22 1 1 1
-H009 c006 m003 (8) 22 1 1 1
-H003 c004 m018 (9) 23 2 2 2
-H000 ancetre (14) 24 0 0 0
--------------------------------------------------------------------------
-Sum 21
-
-Tree length = 21
-Consistency index (CI) = 0.6190
-Homoplasy index (HI) = 0.3810
-CI excluding uninformative characters = 0.5789
-HI excluding uninformative characters = 0.4211
-Retention index (RI) = 0.8140
-Rescaled consistency index (RC) = 0.5039
-
- /---------------------------- H004 c002 m009
- |
- | /------- H005 c004 m010
- | /------------15
- | | \------- H007 c015 m028
- | |
- /-----19-----18 /------- H008 c011 m005
- | | | /-----16
- | | | | \------- H012 c004 m002
- | | \-----17
- /-----20 | \-------------- H014 c002 m003
- | | |
- | | \---------------------------- H013 c004 m010
- /-----21 |
- | | \----------------------------------- H011 c002 m011
- | |
- | \------------------------------------------ H002 c006 m003
- |
- +------------------------------------------------- H006 c003 m001
- /-----23
- | | /------- H010 c013 m002
- | +----------------------------------------22
- | | \------- H009 c006 m003
-------24 |
- | \------------------------------------------------- H003 c004 m018
- |
- \-------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_24 --> node_23 13 1 1.000 1 ==> 2
- node_23 --> node_21 6 1 1.000 2 ==> 1
- 7 1 1.000 2 ==> 1
- node_21 --> node_20 1 1 0.333 2 ==> 1
- 2 1 0.333 2 ==> 1
- 8 1 1.000 2 ==> 1
- node_20 --> node_19 9 1 0.500 2 ==> 1
- 10 1 1.000 2 ==> 1
- node_18 --> node_15 11 1 0.500 2 --> 1
- node_15 --> H005 c004 m010 9 1 0.500 1 ==> 2
- node_18 --> node_17 1 1 0.333 1 ==> 2
- 2 1 0.333 1 ==> 2
- node_16 --> H008 c011 m005 12 1 0.333 2 ==> 1
- node_17 --> H014 c002 m003 11 1 0.500 2 --> 1
- node_19 --> H013 c004 m010 12 1 0.333 2 ==> 1
- node_23 --> H006 c003 m001 5 1 1.000 2 ==> 1
- node_23 --> node_22 3 1 1.000 2 ==> 1
- node_22 --> H010 c013 m002 4 1 1.000 2 ==> 1
- node_22 --> H009 c006 m003 12 1 0.333 2 ==> 1
- node_23 --> H003 c004 m018 1 1 0.333 2 ==> 1
- 2 1 0.333 2 ==> 1
-
-Tree number 75:
-
-Branch lengths and linkages for tree #75
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 23 root 0 0 0
- 22 23 1 1 1
- 20 22 2 2 2
- 19 20 3 3 3
- 18 19 2 2 2
-H004 c002 m009 (1) 18 0 0 0
- 17 18 1 1 1
-H005 c004 m010 (3) 17 1 1 1
- 16 17 2 2 2
- 15 16 1 1 1
-H008 c011 m005 (4) 15 1 1 1
-H012 c004 m002 (13) 15 0 0 0
-H014 c002 m003 (10) 16 0 0 0
-H007 c015 m028 (12) 17 0 0 0
-H013 c004 m010 (11) 18 1 1 1
-H011 c002 m011 (5) 19 0 0 0
-H002 c006 m003 (6) 20 0 0 0
-H006 c003 m001 (2) 22 1 1 1
- 21 22 1 1 1
-H010 c013 m002 (7) 21 1 1 1
-H009 c006 m003 (8) 21 1 1 1
-H003 c004 m018 (9) 22 2 2 2
-H000 ancetre (14) 23 0 0 0
--------------------------------------------------------------------------
-Sum 21
-
-Tree length = 21
-Consistency index (CI) = 0.6190
-Homoplasy index (HI) = 0.3810
-CI excluding uninformative characters = 0.5789
-HI excluding uninformative characters = 0.4211
-Retention index (RI) = 0.8140
-Rescaled consistency index (RC) = 0.5039
-
- /---------------------------- H004 c002 m009
- |
- | /--------------------- H005 c004 m010
- | |
- | | /------- H008 c011 m005
- | | /-----15
- /-----18-----17 | \------- H012 c004 m002
- | | +-----16
- | | | \-------------- H014 c002 m003
- | | |
- /-----19 | \--------------------- H007 c015 m028
- | | |
- | | \---------------------------- H013 c004 m010
- /-----20 |
- | | \----------------------------------- H011 c002 m011
- | |
- | \------------------------------------------ H002 c006 m003
- |
- +------------------------------------------------- H006 c003 m001
- /-----22
- | | /------- H010 c013 m002
- | +----------------------------------------21
- | | \------- H009 c006 m003
-------23 |
- | \------------------------------------------------- H003 c004 m018
- |
- \-------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_23 --> node_22 13 1 1.000 1 ==> 2
- node_22 --> node_20 6 1 1.000 2 ==> 1
- 7 1 1.000 2 ==> 1
- node_20 --> node_19 1 1 0.333 2 ==> 1
- 2 1 0.333 2 ==> 1
- 8 1 1.000 2 ==> 1
- node_19 --> node_18 9 1 0.500 2 ==> 1
- 10 1 1.000 2 ==> 1
- node_18 --> node_17 11 1 0.500 2 ==> 1
- node_17 --> H005 c004 m010 9 1 0.500 1 ==> 2
- node_17 --> node_16 1 1 0.333 1 ==> 2
- 2 1 0.333 1 ==> 2
- node_16 --> node_15 11 1 0.500 1 ==> 2
- node_15 --> H008 c011 m005 12 1 0.333 2 ==> 1
- node_18 --> H013 c004 m010 12 1 0.333 2 ==> 1
- node_22 --> H006 c003 m001 5 1 1.000 2 ==> 1
- node_22 --> node_21 3 1 1.000 2 ==> 1
- node_21 --> H010 c013 m002 4 1 1.000 2 ==> 1
- node_21 --> H009 c006 m003 12 1 0.333 2 ==> 1
- node_22 --> H003 c004 m018 1 1 0.333 2 ==> 1
- 2 1 0.333 2 ==> 1
-
-Tree number 76:
-
-Branch lengths and linkages for tree #76
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 25 root 0 0 0
- 24 25 1 1 1
- 22 24 2 2 2
- 21 22 3 3 3
- 20 21 1 1 2
- 15 20 1 0 1
-H004 c002 m009 (1) 15 0 0 0
-H013 c004 m010 (11) 15 1 1 1
- 19 20 1 1 1
-H005 c004 m010 (3) 19 0 0 1
- 18 19 1 0 1
- 17 18 2 2 2
- 16 17 1 1 1
-H008 c011 m005 (4) 16 1 1 1
-H012 c004 m002 (13) 16 0 0 0
-H014 c002 m003 (10) 17 0 0 0
-H007 c015 m028 (12) 18 0 0 0
-H011 c002 m011 (5) 21 0 0 0
-H002 c006 m003 (6) 22 0 0 0
-H006 c003 m001 (2) 24 1 1 1
- 23 24 1 1 1
-H010 c013 m002 (7) 23 1 1 1
-H009 c006 m003 (8) 23 1 1 1
-H003 c004 m018 (9) 24 2 2 2
-H000 ancetre (14) 25 0 0 0
--------------------------------------------------------------------------
-Sum 21
-
-Tree length = 21
-Consistency index (CI) = 0.6190
-Homoplasy index (HI) = 0.3810
-CI excluding uninformative characters = 0.5789
-HI excluding uninformative characters = 0.4211
-Retention index (RI) = 0.8140
-Rescaled consistency index (RC) = 0.5039
-
- /------ H004 c002 m009
- /-----------------------15
- | \------ H013 c004 m010
- |
- | /------------------------- H005 c004 m010
- /-----20 |
- | | | /------ H008 c011 m005
- | | | /-----16
- | \----19 | \------ H012 c004 m002
- | | /----17
- /----21 | | \------------- H014 c002 m003
- | | \----18
- | | \------------------- H007 c015 m028
- /----22 |
- | | \-------------------------------------- H011 c002 m011
- | |
- | \-------------------------------------------- H002 c006 m003
- |
- +-------------------------------------------------- H006 c003 m001
- /-----24
- | | /------ H010 c013 m002
- | +------------------------------------------23
- | | \------ H009 c006 m003
------25 |
- | \-------------------------------------------------- H003 c004 m018
- |
- \--------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_25 --> node_24 13 1 1.000 1 ==> 2
- node_24 --> node_22 6 1 1.000 2 ==> 1
- 7 1 1.000 2 ==> 1
- node_22 --> node_21 1 1 0.333 2 ==> 1
- 2 1 0.333 2 ==> 1
- 8 1 1.000 2 ==> 1
- node_21 --> node_20 10 1 1.000 2 ==> 1
- node_20 --> node_15 9 1 0.500 2 --> 1
- node_15 --> H013 c004 m010 12 1 0.333 2 ==> 1
- node_20 --> node_19 11 1 0.500 2 ==> 1
- node_19 --> node_18 9 1 0.500 2 --> 1
- node_18 --> node_17 1 1 0.333 1 ==> 2
- 2 1 0.333 1 ==> 2
- node_17 --> node_16 11 1 0.500 1 ==> 2
- node_16 --> H008 c011 m005 12 1 0.333 2 ==> 1
- node_24 --> H006 c003 m001 5 1 1.000 2 ==> 1
- node_24 --> node_23 3 1 1.000 2 ==> 1
- node_23 --> H010 c013 m002 4 1 1.000 2 ==> 1
- node_23 --> H009 c006 m003 12 1 0.333 2 ==> 1
- node_24 --> H003 c004 m018 1 1 0.333 2 ==> 1
- 2 1 0.333 2 ==> 1
-
-Tree number 77:
-
-Branch lengths and linkages for tree #77
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 25 root 0 0 0
- 24 25 1 1 1
- 22 24 2 2 2
- 21 22 3 3 3
- 20 21 1 1 2
- 18 20 1 0 1
-H004 c002 m009 (1) 18 0 0 0
- 17 18 0 0 1
- 16 17 2 2 2
-H008 c011 m005 (4) 16 1 0 1
- 15 16 0 0 1
-H014 c002 m003 (10) 15 1 1 1
-H012 c004 m002 (13) 15 0 0 0
-H013 c004 m010 (11) 17 1 0 1
- 19 20 1 1 1
-H005 c004 m010 (3) 19 0 0 1
-H007 c015 m028 (12) 19 1 0 1
-H011 c002 m011 (5) 21 0 0 0
-H002 c006 m003 (6) 22 0 0 0
-H006 c003 m001 (2) 24 1 1 1
- 23 24 1 1 1
-H010 c013 m002 (7) 23 1 1 1
-H009 c006 m003 (8) 23 1 1 1
-H003 c004 m018 (9) 24 2 2 2
-H000 ancetre (14) 25 0 0 0
--------------------------------------------------------------------------
-Sum 21
-
-Tree length = 21
-Consistency index (CI) = 0.6190
-Homoplasy index (HI) = 0.3810
-CI excluding uninformative characters = 0.5789
-HI excluding uninformative characters = 0.4211
-Retention index (RI) = 0.8140
-Rescaled consistency index (RC) = 0.5039
-
- /------------------------- H004 c002 m009
- |
- | /------------- H008 c011 m005
- /----18 |
- | | /----16 /------ H014 c002 m003
- | | | \-----15
- | \----17 \------ H012 c004 m002
- /-----20 |
- | | \------------------- H013 c004 m010
- | |
- | | /------ H005 c004 m010
- /----21 \-----------------------19
- | | \------ H007 c015 m028
- | |
- /----22 \-------------------------------------- H011 c002 m011
- | |
- | \-------------------------------------------- H002 c006 m003
- |
- +-------------------------------------------------- H006 c003 m001
- /-----24
- | | /------ H010 c013 m002
- | +------------------------------------------23
- | | \------ H009 c006 m003
------25 |
- | \-------------------------------------------------- H003 c004 m018
- |
- \--------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_25 --> node_24 13 1 1.000 1 ==> 2
- node_24 --> node_22 6 1 1.000 2 ==> 1
- 7 1 1.000 2 ==> 1
- node_22 --> node_21 1 1 0.333 2 ==> 1
- 2 1 0.333 2 ==> 1
- 8 1 1.000 2 ==> 1
- node_21 --> node_20 10 1 1.000 2 ==> 1
- node_20 --> node_18 9 1 0.500 2 --> 1
- node_17 --> node_16 1 1 0.333 1 ==> 2
- 2 1 0.333 1 ==> 2
- node_16 --> H008 c011 m005 12 1 0.333 2 --> 1
- node_15 --> H014 c002 m003 11 1 0.500 2 ==> 1
- node_17 --> H013 c004 m010 12 1 0.333 2 --> 1
- node_20 --> node_19 11 1 0.500 2 ==> 1
- node_19 --> H007 c015 m028 9 1 0.500 2 --> 1
- node_24 --> H006 c003 m001 5 1 1.000 2 ==> 1
- node_24 --> node_23 3 1 1.000 2 ==> 1
- node_23 --> H010 c013 m002 4 1 1.000 2 ==> 1
- node_23 --> H009 c006 m003 12 1 0.333 2 ==> 1
- node_24 --> H003 c004 m018 1 1 0.333 2 ==> 1
- 2 1 0.333 2 ==> 1
-
-Tree number 78:
-
-Branch lengths and linkages for tree #78
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 25 root 0 0 0
- 24 25 1 1 1
- 22 24 2 2 2
- 21 22 3 3 3
- 20 21 1 1 2
- 18 20 1 0 1
-H004 c002 m009 (1) 18 0 0 0
- 17 18 0 0 1
- 16 17 2 2 2
-H008 c011 m005 (4) 16 1 0 1
- 15 16 0 0 1
-H014 c002 m003 (10) 15 1 1 1
-H012 c004 m002 (13) 15 0 0 0
-H013 c004 m010 (11) 17 1 0 1
- 19 20 1 1 1
-H005 c004 m010 (3) 19 0 0 1
-H007 c015 m028 (12) 19 1 0 1
-H011 c002 m011 (5) 21 0 0 0
-H003 c004 m018 (9) 22 0 0 0
-H006 c003 m001 (2) 24 1 1 1
-H002 c006 m003 (6) 24 2 2 2
- 23 24 1 1 1
-H010 c013 m002 (7) 23 1 1 1
-H009 c006 m003 (8) 23 1 1 1
-H000 ancetre (14) 25 0 0 0
--------------------------------------------------------------------------
-Sum 21
-
-Tree length = 21
-Consistency index (CI) = 0.6190
-Homoplasy index (HI) = 0.3810
-CI excluding uninformative characters = 0.5789
-HI excluding uninformative characters = 0.4211
-Retention index (RI) = 0.8140
-Rescaled consistency index (RC) = 0.5039
-
- /------------------------- H004 c002 m009
- |
- | /------------- H008 c011 m005
- /----18 |
- | | /----16 /------ H014 c002 m003
- | | | \-----15
- | \----17 \------ H012 c004 m002
- /-----20 |
- | | \------------------- H013 c004 m010
- | |
- | | /------ H005 c004 m010
- /----21 \-----------------------19
- | | \------ H007 c015 m028
- | |
- /----22 \-------------------------------------- H011 c002 m011
- | |
- | \-------------------------------------------- H003 c004 m018
- |
- +-------------------------------------------------- H006 c003 m001
- /-----24
- | +-------------------------------------------------- H002 c006 m003
- | |
- | | /------ H010 c013 m002
------25 \------------------------------------------23
- | \------ H009 c006 m003
- |
- \--------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_25 --> node_24 13 1 1.000 1 ==> 2
- node_24 --> node_22 1 1 0.500 2 ==> 1
- 2 1 0.500 2 ==> 1
- node_22 --> node_21 6 1 0.500 2 ==> 1
- 7 1 0.500 2 ==> 1
- 8 1 1.000 2 ==> 1
- node_21 --> node_20 10 1 1.000 2 ==> 1
- node_20 --> node_18 9 1 0.500 2 --> 1
- node_17 --> node_16 1 1 0.500 1 ==> 2
- 2 1 0.500 1 ==> 2
- node_16 --> H008 c011 m005 12 1 0.333 2 --> 1
- node_15 --> H014 c002 m003 11 1 0.500 2 ==> 1
- node_17 --> H013 c004 m010 12 1 0.333 2 --> 1
- node_20 --> node_19 11 1 0.500 2 ==> 1
- node_19 --> H007 c015 m028 9 1 0.500 2 --> 1
- node_24 --> H006 c003 m001 5 1 1.000 2 ==> 1
- node_24 --> H002 c006 m003 6 1 0.500 2 ==> 1
- 7 1 0.500 2 ==> 1
- node_24 --> node_23 3 1 1.000 2 ==> 1
- node_23 --> H010 c013 m002 4 1 1.000 2 ==> 1
- node_23 --> H009 c006 m003 12 1 0.333 2 ==> 1
-
-Tree number 79:
-
-Branch lengths and linkages for tree #79
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 24 root 0 0 0
- 23 24 1 1 1
- 21 23 2 2 2
- 20 21 3 3 3
- 19 20 1 1 2
- 18 19 1 1 1
- 15 18 0 0 1
-H004 c002 m009 (1) 15 0 0 0
-H013 c004 m010 (11) 15 1 1 1
- 17 18 2 2 2
- 16 17 0 0 1
-H008 c011 m005 (4) 16 1 1 1
-H012 c004 m002 (13) 16 0 0 0
-H014 c002 m003 (10) 17 1 0 1
-H007 c015 m028 (12) 18 1 0 1
-H005 c004 m010 (3) 19 1 0 1
-H011 c002 m011 (5) 20 0 0 0
-H003 c004 m018 (9) 21 0 0 0
-H006 c003 m001 (2) 23 1 1 1
-H002 c006 m003 (6) 23 2 2 2
- 22 23 1 1 1
-H010 c013 m002 (7) 22 1 1 1
-H009 c006 m003 (8) 22 1 1 1
-H000 ancetre (14) 24 0 0 0
--------------------------------------------------------------------------
-Sum 21
-
-Tree length = 21
-Consistency index (CI) = 0.6190
-Homoplasy index (HI) = 0.3810
-CI excluding uninformative characters = 0.5789
-HI excluding uninformative characters = 0.4211
-Retention index (RI) = 0.8140
-Rescaled consistency index (RC) = 0.5039
-
- /------- H004 c002 m009
- /------------15
- | \------- H013 c004 m010
- |
- | /------- H008 c011 m005
- | /-----16
- /-----18 | \------- H012 c004 m002
- | +-----17
- | | \-------------- H014 c002 m003
- /-----19 |
- | | \--------------------- H007 c015 m028
- | |
- /-----20 \---------------------------- H005 c004 m010
- | |
- /-----21 \----------------------------------- H011 c002 m011
- | |
- | \------------------------------------------ H003 c004 m018
- |
- +------------------------------------------------- H006 c003 m001
- /-----23
- | +------------------------------------------------- H002 c006 m003
- | |
- | | /------- H010 c013 m002
-------24 \----------------------------------------22
- | \------- H009 c006 m003
- |
- \-------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_24 --> node_23 13 1 1.000 1 ==> 2
- node_23 --> node_21 1 1 0.500 2 ==> 1
- 2 1 0.500 2 ==> 1
- node_21 --> node_20 6 1 0.500 2 ==> 1
- 7 1 0.500 2 ==> 1
- 8 1 1.000 2 ==> 1
- node_20 --> node_19 10 1 1.000 2 ==> 1
- node_19 --> node_18 9 1 1.000 2 ==> 1
- node_15 --> H013 c004 m010 12 1 0.333 2 ==> 1
- node_18 --> node_17 1 1 0.500 1 ==> 2
- 2 1 0.500 1 ==> 2
- node_16 --> H008 c011 m005 12 1 0.333 2 ==> 1
- node_17 --> H014 c002 m003 11 1 0.333 2 --> 1
- node_18 --> H007 c015 m028 11 1 0.333 2 --> 1
- node_19 --> H005 c004 m010 11 1 0.333 2 --> 1
- node_23 --> H006 c003 m001 5 1 1.000 2 ==> 1
- node_23 --> H002 c006 m003 6 1 0.500 2 ==> 1
- 7 1 0.500 2 ==> 1
- node_23 --> node_22 3 1 1.000 2 ==> 1
- node_22 --> H010 c013 m002 4 1 1.000 2 ==> 1
- node_22 --> H009 c006 m003 12 1 0.333 2 ==> 1
-
-Tree number 80:
-
-Branch lengths and linkages for tree #80
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 26 root 0 0 0
- 25 26 1 1 1
- 23 25 0 0 2
- 22 23 2 2 2
- 21 22 3 1 3
- 20 21 1 1 2
- 15 20 1 0 1
-H004 c002 m009 (1) 15 0 0 0
-H013 c004 m010 (11) 15 1 1 1
- 19 20 1 1 1
-H005 c004 m010 (3) 19 0 0 1
- 18 19 1 0 1
- 17 18 2 2 2
- 16 17 1 1 1
-H008 c011 m005 (4) 16 1 1 1
-H012 c004 m002 (13) 16 0 0 0
-H014 c002 m003 (10) 17 0 0 0
-H007 c015 m028 (12) 18 0 0 0
-H011 c002 m011 (5) 21 0 0 0
-H003 c004 m018 (9) 22 0 0 2
-H002 c006 m003 (6) 23 2 0 2
-H006 c003 m001 (2) 25 1 1 1
- 24 25 1 1 1
-H010 c013 m002 (7) 24 1 1 1
-H009 c006 m003 (8) 24 1 1 1
-H000 ancetre (14) 26 0 0 0
--------------------------------------------------------------------------
-Sum 21
-
-Tree length = 21
-Consistency index (CI) = 0.6190
-Homoplasy index (HI) = 0.3810
-CI excluding uninformative characters = 0.5789
-HI excluding uninformative characters = 0.4211
-Retention index (RI) = 0.8140
-Rescaled consistency index (RC) = 0.5039
-
- /------ H004 c002 m009
- /---------------------15
- | \------ H013 c004 m010
- |
- | /----------------------- H005 c004 m010
- /---20 |
- | | | /------ H008 c011 m005
- | | | /---16
- | \----19 | \------ H012 c004 m002
- | | /----17
- /----21 | | \----------- H014 c002 m003
- | | \----18
- | | \----------------- H007 c015 m028
- /----22 |
- | | \---------------------------------- H011 c002 m011
- | |
- /----23 \---------------------------------------- H003 c004 m018
- | |
- | \---------------------------------------------- H002 c006 m003
- |
- /---25---------------------------------------------------- H006 c003 m001
- | |
- | | /------ H010 c013 m002
------26 \--------------------------------------------24
- | \------ H009 c006 m003
- |
- \--------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_26 --> node_25 13 1 1.000 1 ==> 2
- node_23 --> node_22 1 1 0.500 2 ==> 1
- 2 1 0.500 2 ==> 1
- node_22 --> node_21 6 1 0.500 2 --> 1
- 7 1 0.500 2 --> 1
- 8 1 1.000 2 ==> 1
- node_21 --> node_20 10 1 1.000 2 ==> 1
- node_20 --> node_15 9 1 0.500 2 --> 1
- node_15 --> H013 c004 m010 12 1 0.333 2 ==> 1
- node_20 --> node_19 11 1 0.500 2 ==> 1
- node_19 --> node_18 9 1 0.500 2 --> 1
- node_18 --> node_17 1 1 0.500 1 ==> 2
- 2 1 0.500 1 ==> 2
- node_17 --> node_16 11 1 0.500 1 ==> 2
- node_16 --> H008 c011 m005 12 1 0.333 2 ==> 1
- node_23 --> H002 c006 m003 6 1 0.500 2 --> 1
- 7 1 0.500 2 --> 1
- node_25 --> H006 c003 m001 5 1 1.000 2 ==> 1
- node_25 --> node_24 3 1 1.000 2 ==> 1
- node_24 --> H010 c013 m002 4 1 1.000 2 ==> 1
- node_24 --> H009 c006 m003 12 1 0.333 2 ==> 1
-
-Tree number 81:
-
-Branch lengths and linkages for tree #81
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 24 root 0 0 0
- 23 24 1 1 1
- 21 23 2 2 2
- 20 21 3 3 3
- 19 20 2 2 2
-H004 c002 m009 (1) 19 0 0 0
- 18 19 0 0 1
- 15 18 1 0 1
-H005 c004 m010 (3) 15 1 1 1
-H007 c015 m028 (12) 15 0 0 0
- 17 18 2 2 2
- 16 17 0 0 1
-H008 c011 m005 (4) 16 1 1 1
-H012 c004 m002 (13) 16 0 0 0
-H014 c002 m003 (10) 17 1 0 1
-H013 c004 m010 (11) 19 1 1 1
-H011 c002 m011 (5) 20 0 0 0
-H003 c004 m018 (9) 21 0 0 0
-H006 c003 m001 (2) 23 1 1 1
-H002 c006 m003 (6) 23 2 2 2
- 22 23 1 1 1
-H010 c013 m002 (7) 22 1 1 1
-H009 c006 m003 (8) 22 1 1 1
-H000 ancetre (14) 24 0 0 0
--------------------------------------------------------------------------
-Sum 21
-
-Tree length = 21
-Consistency index (CI) = 0.6190
-Homoplasy index (HI) = 0.3810
-CI excluding uninformative characters = 0.5789
-HI excluding uninformative characters = 0.4211
-Retention index (RI) = 0.8140
-Rescaled consistency index (RC) = 0.5039
-
- /---------------------------- H004 c002 m009
- |
- | /------- H005 c004 m010
- | /------------15
- | | \------- H007 c015 m028
- | |
- /-----19-----18 /------- H008 c011 m005
- | | | /-----16
- | | | | \------- H012 c004 m002
- | | \-----17
- /-----20 | \-------------- H014 c002 m003
- | | |
- | | \---------------------------- H013 c004 m010
- /-----21 |
- | | \----------------------------------- H011 c002 m011
- | |
- | \------------------------------------------ H003 c004 m018
- |
- /-----23------------------------------------------------- H006 c003 m001
- | |
- | +------------------------------------------------- H002 c006 m003
- | |
-------24 | /------- H010 c013 m002
- | \----------------------------------------22
- | \------- H009 c006 m003
- |
- \-------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_24 --> node_23 13 1 1.000 1 ==> 2
- node_23 --> node_21 1 1 0.500 2 ==> 1
- 2 1 0.500 2 ==> 1
- node_21 --> node_20 6 1 0.500 2 ==> 1
- 7 1 0.500 2 ==> 1
- 8 1 1.000 2 ==> 1
- node_20 --> node_19 9 1 0.500 2 ==> 1
- 10 1 1.000 2 ==> 1
- node_18 --> node_15 11 1 0.500 2 --> 1
- node_15 --> H005 c004 m010 9 1 0.500 1 ==> 2
- node_18 --> node_17 1 1 0.500 1 ==> 2
- 2 1 0.500 1 ==> 2
- node_16 --> H008 c011 m005 12 1 0.333 2 ==> 1
- node_17 --> H014 c002 m003 11 1 0.500 2 --> 1
- node_19 --> H013 c004 m010 12 1 0.333 2 ==> 1
- node_23 --> H006 c003 m001 5 1 1.000 2 ==> 1
- node_23 --> H002 c006 m003 6 1 0.500 2 ==> 1
- 7 1 0.500 2 ==> 1
- node_23 --> node_22 3 1 1.000 2 ==> 1
- node_22 --> H010 c013 m002 4 1 1.000 2 ==> 1
- node_22 --> H009 c006 m003 12 1 0.333 2 ==> 1
-
-Tree number 82:
-
-Branch lengths and linkages for tree #82
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 25 root 0 0 0
- 24 25 1 1 1
- 22 24 2 2 2
- 21 22 3 3 3
- 20 21 1 1 2
- 15 20 1 0 1
-H004 c002 m009 (1) 15 0 0 0
-H013 c004 m010 (11) 15 1 1 1
- 19 20 1 1 1
-H005 c004 m010 (3) 19 0 0 1
- 18 19 1 0 1
- 17 18 2 2 2
- 16 17 1 1 1
-H008 c011 m005 (4) 16 1 1 1
-H012 c004 m002 (13) 16 0 0 0
-H014 c002 m003 (10) 17 0 0 0
-H007 c015 m028 (12) 18 0 0 0
-H011 c002 m011 (5) 21 0 0 0
-H003 c004 m018 (9) 22 0 0 0
-H006 c003 m001 (2) 24 1 1 1
-H002 c006 m003 (6) 24 2 2 2
- 23 24 1 1 1
-H010 c013 m002 (7) 23 1 1 1
-H009 c006 m003 (8) 23 1 1 1
-H000 ancetre (14) 25 0 0 0
--------------------------------------------------------------------------
-Sum 21
-
-Tree length = 21
-Consistency index (CI) = 0.6190
-Homoplasy index (HI) = 0.3810
-CI excluding uninformative characters = 0.5789
-HI excluding uninformative characters = 0.4211
-Retention index (RI) = 0.8140
-Rescaled consistency index (RC) = 0.5039
-
- /------ H004 c002 m009
- /-----------------------15
- | \------ H013 c004 m010
- |
- | /------------------------- H005 c004 m010
- /-----20 |
- | | | /------ H008 c011 m005
- | | | /-----16
- | \----19 | \------ H012 c004 m002
- | | /----17
- /----21 | | \------------- H014 c002 m003
- | | \----18
- | | \------------------- H007 c015 m028
- /----22 |
- | | \-------------------------------------- H011 c002 m011
- | |
- | \-------------------------------------------- H003 c004 m018
- |
- /-----24-------------------------------------------------- H006 c003 m001
- | |
- | +-------------------------------------------------- H002 c006 m003
- | |
------25 | /------ H010 c013 m002
- | \------------------------------------------23
- | \------ H009 c006 m003
- |
- \--------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_25 --> node_24 13 1 1.000 1 ==> 2
- node_24 --> node_22 1 1 0.500 2 ==> 1
- 2 1 0.500 2 ==> 1
- node_22 --> node_21 6 1 0.500 2 ==> 1
- 7 1 0.500 2 ==> 1
- 8 1 1.000 2 ==> 1
- node_21 --> node_20 10 1 1.000 2 ==> 1
- node_20 --> node_15 9 1 0.500 2 --> 1
- node_15 --> H013 c004 m010 12 1 0.333 2 ==> 1
- node_20 --> node_19 11 1 0.500 2 ==> 1
- node_19 --> node_18 9 1 0.500 2 --> 1
- node_18 --> node_17 1 1 0.500 1 ==> 2
- 2 1 0.500 1 ==> 2
- node_17 --> node_16 11 1 0.500 1 ==> 2
- node_16 --> H008 c011 m005 12 1 0.333 2 ==> 1
- node_24 --> H006 c003 m001 5 1 1.000 2 ==> 1
- node_24 --> H002 c006 m003 6 1 0.500 2 ==> 1
- 7 1 0.500 2 ==> 1
- node_24 --> node_23 3 1 1.000 2 ==> 1
- node_23 --> H010 c013 m002 4 1 1.000 2 ==> 1
- node_23 --> H009 c006 m003 12 1 0.333 2 ==> 1
-
-Tree number 83:
-
-Branch lengths and linkages for tree #83
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 24 root 0 0 0
- 23 24 1 1 1
- 21 23 2 2 2
- 20 21 3 3 3
- 19 20 2 2 2
-H004 c002 m009 (1) 19 0 0 0
- 15 19 1 1 1
-H005 c004 m010 (3) 15 1 1 1
-H007 c015 m028 (12) 15 0 0 0
- 18 19 0 0 1
- 17 18 2 2 2
-H008 c011 m005 (4) 17 1 0 1
- 16 17 0 0 1
-H014 c002 m003 (10) 16 1 1 1
-H012 c004 m002 (13) 16 0 0 0
-H013 c004 m010 (11) 18 1 0 1
-H011 c002 m011 (5) 20 0 0 0
-H003 c004 m018 (9) 21 0 0 0
-H006 c003 m001 (2) 23 1 1 1
-H002 c006 m003 (6) 23 2 2 2
- 22 23 1 1 1
-H010 c013 m002 (7) 22 1 1 1
-H009 c006 m003 (8) 22 1 1 1
-H000 ancetre (14) 24 0 0 0
--------------------------------------------------------------------------
-Sum 21
-
-Tree length = 21
-Consistency index (CI) = 0.6190
-Homoplasy index (HI) = 0.3810
-CI excluding uninformative characters = 0.5789
-HI excluding uninformative characters = 0.4211
-Retention index (RI) = 0.8140
-Rescaled consistency index (RC) = 0.5039
-
- /---------------------------- H004 c002 m009
- |
- | /------- H005 c004 m010
- +-------------------15
- | \------- H007 c015 m028
- /-----19
- | | /-------------- H008 c011 m005
- | | |
- | | /-----17 /------- H014 c002 m003
- | | | \-----16
- /-----20 \-----18 \------- H012 c004 m002
- | | |
- | | \--------------------- H013 c004 m010
- /-----21 |
- | | \----------------------------------- H011 c002 m011
- | |
- | \------------------------------------------ H003 c004 m018
- |
- /-----23------------------------------------------------- H006 c003 m001
- | |
- | +------------------------------------------------- H002 c006 m003
- | |
-------24 | /------- H010 c013 m002
- | \----------------------------------------22
- | \------- H009 c006 m003
- |
- \-------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_24 --> node_23 13 1 1.000 1 ==> 2
- node_23 --> node_21 1 1 0.500 2 ==> 1
- 2 1 0.500 2 ==> 1
- node_21 --> node_20 6 1 0.500 2 ==> 1
- 7 1 0.500 2 ==> 1
- 8 1 1.000 2 ==> 1
- node_20 --> node_19 9 1 0.500 2 ==> 1
- 10 1 1.000 2 ==> 1
- node_19 --> node_15 11 1 0.500 2 ==> 1
- node_15 --> H005 c004 m010 9 1 0.500 1 ==> 2
- node_18 --> node_17 1 1 0.500 1 ==> 2
- 2 1 0.500 1 ==> 2
- node_17 --> H008 c011 m005 12 1 0.333 2 --> 1
- node_16 --> H014 c002 m003 11 1 0.500 2 ==> 1
- node_18 --> H013 c004 m010 12 1 0.333 2 --> 1
- node_23 --> H006 c003 m001 5 1 1.000 2 ==> 1
- node_23 --> H002 c006 m003 6 1 0.500 2 ==> 1
- 7 1 0.500 2 ==> 1
- node_23 --> node_22 3 1 1.000 2 ==> 1
- node_22 --> H010 c013 m002 4 1 1.000 2 ==> 1
- node_22 --> H009 c006 m003 12 1 0.333 2 ==> 1
-
-Tree number 84:
-
-Branch lengths and linkages for tree #84
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 23 root 0 0 0
- 22 23 1 1 1
- 20 22 2 2 2
- 19 20 3 3 3
- 18 19 2 2 2
-H004 c002 m009 (1) 18 0 0 0
- 17 18 1 1 1
-H005 c004 m010 (3) 17 1 1 1
- 16 17 2 2 2
- 15 16 1 1 1
-H008 c011 m005 (4) 15 1 1 1
-H012 c004 m002 (13) 15 0 0 0
-H014 c002 m003 (10) 16 0 0 0
-H007 c015 m028 (12) 17 0 0 0
-H013 c004 m010 (11) 18 1 1 1
-H011 c002 m011 (5) 19 0 0 0
-H003 c004 m018 (9) 20 0 0 0
-H006 c003 m001 (2) 22 1 1 1
-H002 c006 m003 (6) 22 2 2 2
- 21 22 1 1 1
-H010 c013 m002 (7) 21 1 1 1
-H009 c006 m003 (8) 21 1 1 1
-H000 ancetre (14) 23 0 0 0
--------------------------------------------------------------------------
-Sum 21
-
-Tree length = 21
-Consistency index (CI) = 0.6190
-Homoplasy index (HI) = 0.3810
-CI excluding uninformative characters = 0.5789
-HI excluding uninformative characters = 0.4211
-Retention index (RI) = 0.8140
-Rescaled consistency index (RC) = 0.5039
-
- /---------------------------- H004 c002 m009
- |
- | /--------------------- H005 c004 m010
- | |
- | | /------- H008 c011 m005
- | | /-----15
- /-----18-----17 | \------- H012 c004 m002
- | | +-----16
- | | | \-------------- H014 c002 m003
- | | |
- /-----19 | \--------------------- H007 c015 m028
- | | |
- | | \---------------------------- H013 c004 m010
- /-----20 |
- | | \----------------------------------- H011 c002 m011
- | |
- | \------------------------------------------ H003 c004 m018
- |
- /-----22------------------------------------------------- H006 c003 m001
- | |
- | +------------------------------------------------- H002 c006 m003
- | |
-------23 | /------- H010 c013 m002
- | \----------------------------------------21
- | \------- H009 c006 m003
- |
- \-------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_23 --> node_22 13 1 1.000 1 ==> 2
- node_22 --> node_20 1 1 0.500 2 ==> 1
- 2 1 0.500 2 ==> 1
- node_20 --> node_19 6 1 0.500 2 ==> 1
- 7 1 0.500 2 ==> 1
- 8 1 1.000 2 ==> 1
- node_19 --> node_18 9 1 0.500 2 ==> 1
- 10 1 1.000 2 ==> 1
- node_18 --> node_17 11 1 0.500 2 ==> 1
- node_17 --> H005 c004 m010 9 1 0.500 1 ==> 2
- node_17 --> node_16 1 1 0.500 1 ==> 2
- 2 1 0.500 1 ==> 2
- node_16 --> node_15 11 1 0.500 1 ==> 2
- node_15 --> H008 c011 m005 12 1 0.333 2 ==> 1
- node_18 --> H013 c004 m010 12 1 0.333 2 ==> 1
- node_22 --> H006 c003 m001 5 1 1.000 2 ==> 1
- node_22 --> H002 c006 m003 6 1 0.500 2 ==> 1
- 7 1 0.500 2 ==> 1
- node_22 --> node_21 3 1 1.000 2 ==> 1
- node_21 --> H010 c013 m002 4 1 1.000 2 ==> 1
- node_21 --> H009 c006 m003 12 1 0.333 2 ==> 1
-
-Tree number 85:
-
-Branch lengths and linkages for tree #85
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 26 root 0 0 0
- 25 26 1 1 1
- 23 25 0 0 2
- 22 23 2 2 2
- 21 22 3 1 3
- 20 21 1 1 2
- 18 20 1 0 1
-H004 c002 m009 (1) 18 0 0 0
- 17 18 0 0 1
- 16 17 2 2 2
-H008 c011 m005 (4) 16 1 0 1
- 15 16 0 0 1
-H014 c002 m003 (10) 15 1 1 1
-H012 c004 m002 (13) 15 0 0 0
-H013 c004 m010 (11) 17 1 0 1
- 19 20 1 1 1
-H005 c004 m010 (3) 19 0 0 1
-H007 c015 m028 (12) 19 1 0 1
-H011 c002 m011 (5) 21 0 0 0
-H003 c004 m018 (9) 22 0 0 2
-H002 c006 m003 (6) 23 2 0 2
-H006 c003 m001 (2) 25 1 1 1
- 24 25 1 1 1
-H010 c013 m002 (7) 24 1 1 1
-H009 c006 m003 (8) 24 1 1 1
-H000 ancetre (14) 26 0 0 0
--------------------------------------------------------------------------
-Sum 21
-
-Tree length = 21
-Consistency index (CI) = 0.6190
-Homoplasy index (HI) = 0.3810
-CI excluding uninformative characters = 0.5789
-HI excluding uninformative characters = 0.4211
-Retention index (RI) = 0.8140
-Rescaled consistency index (RC) = 0.5039
-
- /----------------------- H004 c002 m009
- |
- | /----------- H008 c011 m005
- /----18 |
- | | /----16 /------ H014 c002 m003
- | | | \---15
- | \----17 \------ H012 c004 m002
- /---20 |
- | | \----------------- H013 c004 m010
- | |
- | | /------ H005 c004 m010
- /----21 \---------------------19
- | | \------ H007 c015 m028
- | |
- /----22 \---------------------------------- H011 c002 m011
- | |
- /----23 \---------------------------------------- H003 c004 m018
- | |
- | \---------------------------------------------- H002 c006 m003
- |
- /---25---------------------------------------------------- H006 c003 m001
- | |
- | | /------ H010 c013 m002
------26 \--------------------------------------------24
- | \------ H009 c006 m003
- |
- \--------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_26 --> node_25 13 1 1.000 1 ==> 2
- node_23 --> node_22 1 1 0.500 2 ==> 1
- 2 1 0.500 2 ==> 1
- node_22 --> node_21 6 1 0.500 2 --> 1
- 7 1 0.500 2 --> 1
- 8 1 1.000 2 ==> 1
- node_21 --> node_20 10 1 1.000 2 ==> 1
- node_20 --> node_18 9 1 0.500 2 --> 1
- node_17 --> node_16 1 1 0.500 1 ==> 2
- 2 1 0.500 1 ==> 2
- node_16 --> H008 c011 m005 12 1 0.333 2 --> 1
- node_15 --> H014 c002 m003 11 1 0.500 2 ==> 1
- node_17 --> H013 c004 m010 12 1 0.333 2 --> 1
- node_20 --> node_19 11 1 0.500 2 ==> 1
- node_19 --> H007 c015 m028 9 1 0.500 2 --> 1
- node_23 --> H002 c006 m003 6 1 0.500 2 --> 1
- 7 1 0.500 2 --> 1
- node_25 --> H006 c003 m001 5 1 1.000 2 ==> 1
- node_25 --> node_24 3 1 1.000 2 ==> 1
- node_24 --> H010 c013 m002 4 1 1.000 2 ==> 1
- node_24 --> H009 c006 m003 12 1 0.333 2 ==> 1
-
-Tree number 86:
-
-Branch lengths and linkages for tree #86
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 25 root 0 0 0
- 24 25 1 1 1
- 22 24 0 0 2
- 21 22 2 2 2
- 20 21 3 1 3
- 19 20 2 2 2
-H004 c002 m009 (1) 19 0 0 0
- 15 19 1 1 1
-H005 c004 m010 (3) 15 1 1 1
-H007 c015 m028 (12) 15 0 0 0
- 18 19 0 0 1
- 17 18 2 2 2
-H008 c011 m005 (4) 17 1 0 1
- 16 17 0 0 1
-H014 c002 m003 (10) 16 1 1 1
-H012 c004 m002 (13) 16 0 0 0
-H013 c004 m010 (11) 18 1 0 1
-H011 c002 m011 (5) 20 0 0 0
-H003 c004 m018 (9) 21 0 0 2
-H002 c006 m003 (6) 22 2 0 2
-H006 c003 m001 (2) 24 1 1 1
- 23 24 1 1 1
-H010 c013 m002 (7) 23 1 1 1
-H009 c006 m003 (8) 23 1 1 1
-H000 ancetre (14) 25 0 0 0
--------------------------------------------------------------------------
-Sum 21
-
-Tree length = 21
-Consistency index (CI) = 0.6190
-Homoplasy index (HI) = 0.3810
-CI excluding uninformative characters = 0.5789
-HI excluding uninformative characters = 0.4211
-Retention index (RI) = 0.8140
-Rescaled consistency index (RC) = 0.5039
-
- /------------------------- H004 c002 m009
- |
- | /------ H005 c004 m010
- +-----------------15
- | \------ H007 c015 m028
- /----19
- | | /------------- H008 c011 m005
- | | |
- | | /----17 /------ H014 c002 m003
- | | | \-----16
- /-----20 \----18 \------ H012 c004 m002
- | | |
- | | \------------------- H013 c004 m010
- /----21 |
- | | \------------------------------- H011 c002 m011
- | |
- /----22 \-------------------------------------- H003 c004 m018
- | |
- | \-------------------------------------------- H002 c006 m003
- |
- /-----24-------------------------------------------------- H006 c003 m001
- | |
- | | /------ H010 c013 m002
------25 \------------------------------------------23
- | \------ H009 c006 m003
- |
- \--------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_25 --> node_24 13 1 1.000 1 ==> 2
- node_22 --> node_21 1 1 0.500 2 ==> 1
- 2 1 0.500 2 ==> 1
- node_21 --> node_20 6 1 0.500 2 --> 1
- 7 1 0.500 2 --> 1
- 8 1 1.000 2 ==> 1
- node_20 --> node_19 9 1 0.500 2 ==> 1
- 10 1 1.000 2 ==> 1
- node_19 --> node_15 11 1 0.500 2 ==> 1
- node_15 --> H005 c004 m010 9 1 0.500 1 ==> 2
- node_18 --> node_17 1 1 0.500 1 ==> 2
- 2 1 0.500 1 ==> 2
- node_17 --> H008 c011 m005 12 1 0.333 2 --> 1
- node_16 --> H014 c002 m003 11 1 0.500 2 ==> 1
- node_18 --> H013 c004 m010 12 1 0.333 2 --> 1
- node_22 --> H002 c006 m003 6 1 0.500 2 --> 1
- 7 1 0.500 2 --> 1
- node_24 --> H006 c003 m001 5 1 1.000 2 ==> 1
- node_24 --> node_23 3 1 1.000 2 ==> 1
- node_23 --> H010 c013 m002 4 1 1.000 2 ==> 1
- node_23 --> H009 c006 m003 12 1 0.333 2 ==> 1
-
-Tree number 87:
-
-Branch lengths and linkages for tree #87
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 25 root 0 0 0
- 24 25 1 1 1
- 22 24 0 0 2
- 21 22 2 2 2
- 20 21 3 1 3
- 19 20 2 2 2
-H004 c002 m009 (1) 19 0 0 0
- 18 19 0 0 1
- 15 18 1 0 1
-H005 c004 m010 (3) 15 1 1 1
-H007 c015 m028 (12) 15 0 0 0
- 17 18 2 2 2
- 16 17 0 0 1
-H008 c011 m005 (4) 16 1 1 1
-H012 c004 m002 (13) 16 0 0 0
-H014 c002 m003 (10) 17 1 0 1
-H013 c004 m010 (11) 19 1 1 1
-H011 c002 m011 (5) 20 0 0 0
-H003 c004 m018 (9) 21 0 0 2
-H002 c006 m003 (6) 22 2 0 2
-H006 c003 m001 (2) 24 1 1 1
- 23 24 1 1 1
-H010 c013 m002 (7) 23 1 1 1
-H009 c006 m003 (8) 23 1 1 1
-H000 ancetre (14) 25 0 0 0
--------------------------------------------------------------------------
-Sum 21
-
-Tree length = 21
-Consistency index (CI) = 0.6190
-Homoplasy index (HI) = 0.3810
-CI excluding uninformative characters = 0.5789
-HI excluding uninformative characters = 0.4211
-Retention index (RI) = 0.8140
-Rescaled consistency index (RC) = 0.5039
-
- /------------------------- H004 c002 m009
- |
- | /------ H005 c004 m010
- | /-----------15
- | | \------ H007 c015 m028
- | |
- /----19----18 /------ H008 c011 m005
- | | | /-----16
- | | | | \------ H012 c004 m002
- | | \----17
- /-----20 | \------------- H014 c002 m003
- | | |
- | | \------------------------- H013 c004 m010
- /----21 |
- | | \------------------------------- H011 c002 m011
- | |
- /----22 \-------------------------------------- H003 c004 m018
- | |
- | \-------------------------------------------- H002 c006 m003
- |
- /-----24-------------------------------------------------- H006 c003 m001
- | |
- | | /------ H010 c013 m002
------25 \------------------------------------------23
- | \------ H009 c006 m003
- |
- \--------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_25 --> node_24 13 1 1.000 1 ==> 2
- node_22 --> node_21 1 1 0.500 2 ==> 1
- 2 1 0.500 2 ==> 1
- node_21 --> node_20 6 1 0.500 2 --> 1
- 7 1 0.500 2 --> 1
- 8 1 1.000 2 ==> 1
- node_20 --> node_19 9 1 0.500 2 ==> 1
- 10 1 1.000 2 ==> 1
- node_18 --> node_15 11 1 0.500 2 --> 1
- node_15 --> H005 c004 m010 9 1 0.500 1 ==> 2
- node_18 --> node_17 1 1 0.500 1 ==> 2
- 2 1 0.500 1 ==> 2
- node_16 --> H008 c011 m005 12 1 0.333 2 ==> 1
- node_17 --> H014 c002 m003 11 1 0.500 2 --> 1
- node_19 --> H013 c004 m010 12 1 0.333 2 ==> 1
- node_22 --> H002 c006 m003 6 1 0.500 2 --> 1
- 7 1 0.500 2 --> 1
- node_24 --> H006 c003 m001 5 1 1.000 2 ==> 1
- node_24 --> node_23 3 1 1.000 2 ==> 1
- node_23 --> H010 c013 m002 4 1 1.000 2 ==> 1
- node_23 --> H009 c006 m003 12 1 0.333 2 ==> 1
-
-Tree number 88:
-
-Branch lengths and linkages for tree #88
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 24 root 0 0 0
- 23 24 1 1 1
- 21 23 0 0 2
- 20 21 2 2 2
- 19 20 3 1 3
- 18 19 2 2 2
-H004 c002 m009 (1) 18 0 0 0
- 17 18 1 1 1
-H005 c004 m010 (3) 17 1 1 1
- 16 17 2 2 2
- 15 16 1 1 1
-H008 c011 m005 (4) 15 1 1 1
-H012 c004 m002 (13) 15 0 0 0
-H014 c002 m003 (10) 16 0 0 0
-H007 c015 m028 (12) 17 0 0 0
-H013 c004 m010 (11) 18 1 1 1
-H011 c002 m011 (5) 19 0 0 0
-H003 c004 m018 (9) 20 0 0 2
-H002 c006 m003 (6) 21 2 0 2
-H006 c003 m001 (2) 23 1 1 1
- 22 23 1 1 1
-H010 c013 m002 (7) 22 1 1 1
-H009 c006 m003 (8) 22 1 1 1
-H000 ancetre (14) 24 0 0 0
--------------------------------------------------------------------------
-Sum 21
-
-Tree length = 21
-Consistency index (CI) = 0.6190
-Homoplasy index (HI) = 0.3810
-CI excluding uninformative characters = 0.5789
-HI excluding uninformative characters = 0.4211
-Retention index (RI) = 0.8140
-Rescaled consistency index (RC) = 0.5039
-
- /------------------------- H004 c002 m009
- |
- | /------------------- H005 c004 m010
- | |
- | | /------ H008 c011 m005
- | | /-----15
- /----18----17 | \------ H012 c004 m002
- | | +----16
- | | | \------------- H014 c002 m003
- | | |
- /-----19 | \------------------- H007 c015 m028
- | | |
- | | \------------------------- H013 c004 m010
- /----20 |
- | | \------------------------------- H011 c002 m011
- | |
- /----21 \-------------------------------------- H003 c004 m018
- | |
- | \-------------------------------------------- H002 c006 m003
- |
- /-----23-------------------------------------------------- H006 c003 m001
- | |
- | | /------ H010 c013 m002
------24 \------------------------------------------22
- | \------ H009 c006 m003
- |
- \--------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_24 --> node_23 13 1 1.000 1 ==> 2
- node_21 --> node_20 1 1 0.500 2 ==> 1
- 2 1 0.500 2 ==> 1
- node_20 --> node_19 6 1 0.500 2 --> 1
- 7 1 0.500 2 --> 1
- 8 1 1.000 2 ==> 1
- node_19 --> node_18 9 1 0.500 2 ==> 1
- 10 1 1.000 2 ==> 1
- node_18 --> node_17 11 1 0.500 2 ==> 1
- node_17 --> H005 c004 m010 9 1 0.500 1 ==> 2
- node_17 --> node_16 1 1 0.500 1 ==> 2
- 2 1 0.500 1 ==> 2
- node_16 --> node_15 11 1 0.500 1 ==> 2
- node_15 --> H008 c011 m005 12 1 0.333 2 ==> 1
- node_18 --> H013 c004 m010 12 1 0.333 2 ==> 1
- node_21 --> H002 c006 m003 6 1 0.500 2 --> 1
- 7 1 0.500 2 --> 1
- node_23 --> H006 c003 m001 5 1 1.000 2 ==> 1
- node_23 --> node_22 3 1 1.000 2 ==> 1
- node_22 --> H010 c013 m002 4 1 1.000 2 ==> 1
- node_22 --> H009 c006 m003 12 1 0.333 2 ==> 1
-
-Tree number 89:
-
-Branch lengths and linkages for tree #89
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 25 root 0 0 0
- 24 25 1 1 1
- 22 24 0 0 2
- 21 22 2 2 2
- 20 21 3 1 3
- 19 20 1 1 2
- 18 19 1 1 1
- 15 18 0 0 1
-H004 c002 m009 (1) 15 0 0 0
-H013 c004 m010 (11) 15 1 1 1
- 17 18 2 2 2
- 16 17 0 0 1
-H008 c011 m005 (4) 16 1 1 1
-H012 c004 m002 (13) 16 0 0 0
-H014 c002 m003 (10) 17 1 0 1
-H007 c015 m028 (12) 18 1 0 1
-H005 c004 m010 (3) 19 1 0 1
-H011 c002 m011 (5) 20 0 0 0
-H003 c004 m018 (9) 21 0 0 2
-H002 c006 m003 (6) 22 2 0 2
-H006 c003 m001 (2) 24 1 1 1
- 23 24 1 1 1
-H010 c013 m002 (7) 23 1 1 1
-H009 c006 m003 (8) 23 1 1 1
-H000 ancetre (14) 25 0 0 0
--------------------------------------------------------------------------
-Sum 21
-
-Tree length = 21
-Consistency index (CI) = 0.6190
-Homoplasy index (HI) = 0.3810
-CI excluding uninformative characters = 0.5789
-HI excluding uninformative characters = 0.4211
-Retention index (RI) = 0.8140
-Rescaled consistency index (RC) = 0.5039
-
- /------ H004 c002 m009
- /-----------15
- | \------ H013 c004 m010
- |
- | /------ H008 c011 m005
- | /-----16
- /----18 | \------ H012 c004 m002
- | +----17
- | | \------------- H014 c002 m003
- /----19 |
- | | \------------------- H007 c015 m028
- | |
- /-----20 \------------------------- H005 c004 m010
- | |
- /----21 \------------------------------- H011 c002 m011
- | |
- /----22 \-------------------------------------- H003 c004 m018
- | |
- | \-------------------------------------------- H002 c006 m003
- |
- /-----24-------------------------------------------------- H006 c003 m001
- | |
- | | /------ H010 c013 m002
------25 \------------------------------------------23
- | \------ H009 c006 m003
- |
- \--------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_25 --> node_24 13 1 1.000 1 ==> 2
- node_22 --> node_21 1 1 0.500 2 ==> 1
- 2 1 0.500 2 ==> 1
- node_21 --> node_20 6 1 0.500 2 --> 1
- 7 1 0.500 2 --> 1
- 8 1 1.000 2 ==> 1
- node_20 --> node_19 10 1 1.000 2 ==> 1
- node_19 --> node_18 9 1 1.000 2 ==> 1
- node_15 --> H013 c004 m010 12 1 0.333 2 ==> 1
- node_18 --> node_17 1 1 0.500 1 ==> 2
- 2 1 0.500 1 ==> 2
- node_16 --> H008 c011 m005 12 1 0.333 2 ==> 1
- node_17 --> H014 c002 m003 11 1 0.333 2 --> 1
- node_18 --> H007 c015 m028 11 1 0.333 2 --> 1
- node_19 --> H005 c004 m010 11 1 0.333 2 --> 1
- node_22 --> H002 c006 m003 6 1 0.500 2 --> 1
- 7 1 0.500 2 --> 1
- node_24 --> H006 c003 m001 5 1 1.000 2 ==> 1
- node_24 --> node_23 3 1 1.000 2 ==> 1
- node_23 --> H010 c013 m002 4 1 1.000 2 ==> 1
- node_23 --> H009 c006 m003 12 1 0.333 2 ==> 1
diff --git a/Documentation/example_files/case_control/association/test.tree b/Documentation/example_files/case_control/association/test.tree
deleted file mode 100644
index 225eef6384f7368a6f11710c178fc0699c3e1d12..0000000000000000000000000000000000000000
--- a/Documentation/example_files/case_control/association/test.tree
+++ /dev/null
@@ -1,120 +0,0 @@
-#NEXUS
-
-Begin trees; [Treefile saved Tue Jul 5 18:05:27 2005]
-[!
->Data file = /home/cbardel/recherche/logiciel/altree/Documentation/example_files/phase/association/caco.paup
->Heuristic search settings:
-> Optimality criterion = parsimony
-> Character-status summary:
-> Of 13 total characters:
-> All characters are of type 'unord'
-> All characters have equal weight
-> 2 characters are parsimony-uninformative
-> Number of parsimony-informative characters = 11
-> Starting tree(s) obtained via stepwise addition
-> Addition sequence: simple (reference taxon = H004 c002 m009)
-> Number of trees held at each step during stepwise addition = 1
-> Branch-swapping algorithm: tree-bisection-reconnection (TBR)
-> Steepest descent option not in effect
-> 'MaxTrees' setting = 1000 (will not be increased)
-> Branches collapsed (creating polytomies) if maximum branch length is zero
-> 'MulTrees' option in effect
-> Topological constraints not enforced
-> Trees are unrooted
->
->Heuristic search completed
-> Total number of rearrangements tried = 89894
-> Score of best tree(s) found = 21
-> Number of trees retained = 89
-> Time used = 1 sec (CPU time = 0.12 sec)
-]
-tree PAUP_1 = [&R] (((((H004_c002_m009,(H005_c004_m010,H011_c002_m011),H013_c004_m010,H007_c015_m028),H008_c011_m005,H014_c002_m003,H012_c004_m002),H002_c006_m003),H006_c003_m001,(H010_c013_m002,H009_c006_m003),H003_c004_m018),H000_ancetre);
-tree PAUP_2 = [&R] (((((((H004_c002_m009,(H008_c011_m005,H014_c002_m003,H012_c004_m002),H013_c004_m010,H007_c015_m028),H005_c004_m010),H011_c002_m011),H002_c006_m003),H003_c004_m018),H006_c003_m001,(H010_c013_m002,H009_c006_m003)),H000_ancetre);
-tree PAUP_3 = [&R] (((((H004_c002_m009,((H005_c004_m010,H011_c002_m011),H007_c015_m028),H013_c004_m010),H008_c011_m005,H014_c002_m003,H012_c004_m002),H002_c006_m003),H006_c003_m001,(H010_c013_m002,H009_c006_m003),H003_c004_m018),H000_ancetre);
-tree PAUP_4 = [&R] (((((((H004_c002_m009,H013_c004_m010),(H005_c004_m010,H011_c002_m011),H007_c015_m028),H014_c002_m003),H008_c011_m005,H012_c004_m002),H002_c006_m003),H006_c003_m001,(H010_c013_m002,H009_c006_m003),H003_c004_m018),H000_ancetre);
-tree PAUP_5 = [&R] (((((((H004_c002_m009,H013_c004_m010),((H005_c004_m010,H011_c002_m011),H007_c015_m028)),H014_c002_m003),H008_c011_m005,H012_c004_m002),H002_c006_m003),H006_c003_m001,(H010_c013_m002,H009_c006_m003),H003_c004_m018),H000_ancetre);
-tree PAUP_6 = [&R] ((((((H004_c002_m009,H013_c004_m010,H007_c015_m028),(H005_c004_m010,H011_c002_m011)),(H008_c011_m005,H014_c002_m003,H012_c004_m002)),H002_c006_m003),H006_c003_m001,(H010_c013_m002,H009_c006_m003),H003_c004_m018),H000_ancetre);
-tree PAUP_7 = [&R] ((((((H004_c002_m009,H013_c004_m010,H007_c015_m028),H005_c004_m010,H011_c002_m011),(H008_c011_m005,H014_c002_m003,H012_c004_m002)),H002_c006_m003),H006_c003_m001,(H010_c013_m002,H009_c006_m003),H003_c004_m018),H000_ancetre);
-tree PAUP_8 = [&R] ((((((((H004_c002_m009,H013_c004_m010),H007_c015_m028),H005_c004_m010),H011_c002_m011),(H008_c011_m005,H014_c002_m003,H012_c004_m002)),H002_c006_m003),H006_c003_m001,(H010_c013_m002,H009_c006_m003),H003_c004_m018),H000_ancetre);
-tree PAUP_9 = [&R] (((((((H004_c002_m009,((H005_c004_m010,H011_c002_m011),H007_c015_m028)),H013_c004_m010),H008_c011_m005),H014_c002_m003,H012_c004_m002),H002_c006_m003),H006_c003_m001,(H010_c013_m002,H009_c006_m003),H003_c004_m018),H000_ancetre);
-tree PAUP_10 = [&R] (((((H004_c002_m009,((H005_c004_m010,H007_c015_m028),H011_c002_m011),H013_c004_m010),H008_c011_m005,H014_c002_m003,H012_c004_m002),H002_c006_m003),H006_c003_m001,(H010_c013_m002,H009_c006_m003),H003_c004_m018),H000_ancetre);
-tree PAUP_11 = [&R] ((((((((H004_c002_m009,H013_c004_m010),(H005_c004_m010,H011_c002_m011)),H007_c015_m028),H014_c002_m003),H008_c011_m005,H012_c004_m002),H002_c006_m003),H006_c003_m001,(H010_c013_m002,H009_c006_m003),H003_c004_m018),H000_ancetre);
-tree PAUP_12 = [&R] (((((H004_c002_m009,(H005_c004_m010,H007_c015_m028),H011_c002_m011,H013_c004_m010),H008_c011_m005,H014_c002_m003,H012_c004_m002),H002_c006_m003),H006_c003_m001,(H010_c013_m002,H009_c006_m003),H003_c004_m018),H000_ancetre);
-tree PAUP_13 = [&R] (((((((H004_c002_m009,(H008_c011_m005,H014_c002_m003,H012_c004_m002),H013_c004_m010,H007_c015_m028),H005_c004_m010),H011_c002_m011),H003_c004_m018),H002_c006_m003),H006_c003_m001,(H010_c013_m002,H009_c006_m003)),H000_ancetre);
-tree PAUP_14 = [&R] ((((((H004_c002_m009,(H008_c011_m005,H014_c002_m003,H012_c004_m002),H013_c004_m010,H007_c015_m028),H005_c004_m010),H011_c002_m011),H003_c004_m018),H006_c003_m001,H002_c006_m003,(H010_c013_m002,H009_c006_m003)),H000_ancetre);
-tree PAUP_15 = [&R] ((((((H004_c002_m009,(H008_c011_m005,H014_c002_m003,H012_c004_m002),H013_c004_m010,H007_c015_m028),H005_c004_m010),H011_c002_m011),H002_c006_m003),H006_c003_m001,(H010_c013_m002,H009_c006_m003),H003_c004_m018),H000_ancetre);
-tree PAUP_16 = [&R] ((((((H004_c002_m009,(H005_c004_m010,H007_c015_m028),(H008_c011_m005,H014_c002_m003,H012_c004_m002),H013_c004_m010),H011_c002_m011),H002_c006_m003),H003_c004_m018),H006_c003_m001,(H010_c013_m002,H009_c006_m003)),H000_ancetre);
-tree PAUP_17 = [&R] (((((((H004_c002_m009,(((H008_c011_m005,H012_c004_m002),H014_c002_m003),H007_c015_m028),H013_c004_m010),H005_c004_m010),H011_c002_m011),H002_c006_m003),H003_c004_m018),H006_c003_m001,(H010_c013_m002,H009_c006_m003)),H000_ancetre);
-tree PAUP_18 = [&R] (((((((H004_c002_m009,H013_c004_m010,H007_c015_m028),H005_c004_m010),H011_c002_m011),(H008_c011_m005,H014_c002_m003,H012_c004_m002)),H002_c006_m003),H006_c003_m001,(H010_c013_m002,H009_c006_m003),H003_c004_m018),H000_ancetre);
-tree PAUP_19 = [&R] (((((((H004_c002_m009,((H008_c011_m005,(H014_c002_m003,H012_c004_m002)),H013_c004_m010),H007_c015_m028),H005_c004_m010),H011_c002_m011),H002_c006_m003),H003_c004_m018),H006_c003_m001,(H010_c013_m002,H009_c006_m003)),H000_ancetre);
-tree PAUP_20 = [&R] ((((((((H004_c002_m009,H013_c004_m010),((H008_c011_m005,H012_c004_m002),H014_c002_m003),H007_c015_m028),H005_c004_m010),H011_c002_m011),H002_c006_m003),H003_c004_m018),H006_c003_m001,(H010_c013_m002,H009_c006_m003)),H000_ancetre);
-tree PAUP_21 = [&R] ((((((((H004_c002_m009,(H008_c011_m005,H014_c002_m003,H012_c004_m002),H013_c004_m010),H007_c015_m028),H005_c004_m010),H011_c002_m011),H002_c006_m003),H003_c004_m018),H006_c003_m001,(H010_c013_m002,H009_c006_m003)),H000_ancetre);
-tree PAUP_22 = [&R] (((((((H004_c002_m009,(H008_c011_m005,H014_c002_m003,H012_c004_m002),H013_c004_m010),(H005_c004_m010,H007_c015_m028)),H011_c002_m011),H002_c006_m003),H003_c004_m018),H006_c003_m001,(H010_c013_m002,H009_c006_m003)),H000_ancetre);
-tree PAUP_23 = [&R] (((((((((H004_c002_m009,H013_c004_m010),((H008_c011_m005,H012_c004_m002),H014_c002_m003)),H007_c015_m028),H005_c004_m010),H011_c002_m011),H002_c006_m003),H003_c004_m018),H006_c003_m001,(H010_c013_m002,H009_c006_m003)),H000_ancetre);
-tree PAUP_24 = [&R] (((((((H004_c002_m009,(H008_c011_m005,H014_c002_m003,H012_c004_m002),H013_c004_m010),H007_c015_m028),H005_c004_m010),H011_c002_m011),H002_c006_m003),H006_c003_m001,(H010_c013_m002,H009_c006_m003),H003_c004_m018),H000_ancetre);
-tree PAUP_25 = [&R] ((((((H004_c002_m009,H013_c004_m010),((H005_c004_m010,H007_c015_m028),H011_c002_m011)),(H008_c011_m005,H014_c002_m003,H012_c004_m002)),H002_c006_m003),H006_c003_m001,(H010_c013_m002,H009_c006_m003),H003_c004_m018),H000_ancetre);
-tree PAUP_26 = [&R] ((((((H004_c002_m009,(H005_c004_m010,H007_c015_m028),H013_c004_m010),H011_c002_m011),(H008_c011_m005,H014_c002_m003,H012_c004_m002)),H002_c006_m003),H006_c003_m001,(H010_c013_m002,H009_c006_m003),H003_c004_m018),H000_ancetre);
-tree PAUP_27 = [&R] ((((((H004_c002_m009,(H005_c004_m010,H007_c015_m028),H013_c004_m010),(H008_c011_m005,H014_c002_m003,H012_c004_m002)),H011_c002_m011),H002_c006_m003),H006_c003_m001,(H010_c013_m002,H009_c006_m003),H003_c004_m018),H000_ancetre);
-tree PAUP_28 = [&R] (((((((H004_c002_m009,(H008_c011_m005,H014_c002_m003,H012_c004_m002),H013_c004_m010),H007_c015_m028),H005_c004_m010),H011_c002_m011),H003_c004_m018),H006_c003_m001,H002_c006_m003,(H010_c013_m002,H009_c006_m003)),H000_ancetre);
-tree PAUP_29 = [&R] (((((((((H004_c002_m009,H013_c004_m010),H011_c002_m011),H005_c004_m010),H007_c015_m028),H014_c002_m003),H008_c011_m005,H012_c004_m002),H002_c006_m003),H006_c003_m001,(H010_c013_m002,H009_c006_m003),H003_c004_m018),H000_ancetre);
-tree PAUP_30 = [&R] (((((((H004_c002_m009,(H005_c004_m010,H011_c002_m011),H013_c004_m010),H007_c015_m028),H014_c002_m003),H008_c011_m005,H012_c004_m002),H002_c006_m003),H006_c003_m001,(H010_c013_m002,H009_c006_m003),H003_c004_m018),H000_ancetre);
-tree PAUP_31 = [&R] (((((((H004_c002_m009,H011_c002_m011,H013_c004_m010),(H005_c004_m010,H007_c015_m028)),H014_c002_m003),H008_c011_m005,H012_c004_m002),H002_c006_m003),H006_c003_m001,(H010_c013_m002,H009_c006_m003),H003_c004_m018),H000_ancetre);
-tree PAUP_32 = [&R] ((((((((H004_c002_m009,H013_c004_m010),(H005_c004_m010,H007_c015_m028)),H014_c002_m003),H008_c011_m005,H012_c004_m002),H011_c002_m011),H002_c006_m003),H006_c003_m001,(H010_c013_m002,H009_c006_m003),H003_c004_m018),H000_ancetre);
-tree PAUP_33 = [&R] ((((((((H004_c002_m009,H013_c004_m010),((H008_c011_m005,H012_c004_m002),H014_c002_m003)),H007_c015_m028),H005_c004_m010),H011_c002_m011),H002_c006_m003),H006_c003_m001,(H010_c013_m002,H009_c006_m003),H003_c004_m018),H000_ancetre);
-tree PAUP_34 = [&R] ((((((((H004_c002_m009,H013_c004_m010),((H008_c011_m005,H012_c004_m002),H014_c002_m003)),H007_c015_m028),H005_c004_m010),H011_c002_m011),H003_c004_m018),H006_c003_m001,H002_c006_m003,(H010_c013_m002,H009_c006_m003)),H000_ancetre);
-tree PAUP_35 = [&R] (((((((H004_c002_m009,(H005_c004_m010,H011_c002_m011),H007_c015_m028),H013_c004_m010),H008_c011_m005),H014_c002_m003,H012_c004_m002),H002_c006_m003),H006_c003_m001,(H010_c013_m002,H009_c006_m003),H003_c004_m018),H000_ancetre);
-tree PAUP_36 = [&R] ((((((H004_c002_m009,H013_c004_m010),(H005_c004_m010,H007_c015_m028),H011_c002_m011),(H008_c011_m005,H014_c002_m003,H012_c004_m002)),H002_c006_m003),H006_c003_m001,(H010_c013_m002,H009_c006_m003),H003_c004_m018),H000_ancetre);
-tree PAUP_37 = [&R] ((((((H004_c002_m009,(H005_c004_m010,H007_c015_m028),H013_c004_m010),H008_c011_m005,H014_c002_m003,H012_c004_m002),H011_c002_m011),H002_c006_m003),H006_c003_m001,(H010_c013_m002,H009_c006_m003),H003_c004_m018),H000_ancetre);
-tree PAUP_38 = [&R] ((((((((H004_c002_m009,H013_c004_m010),H005_c004_m010,H007_c015_m028),H014_c002_m003),H008_c011_m005,H012_c004_m002),H011_c002_m011),H002_c006_m003),H006_c003_m001,(H010_c013_m002,H009_c006_m003),H003_c004_m018),H000_ancetre);
-tree PAUP_39 = [&R] ((((((((H004_c002_m009,(H005_c004_m010,H007_c015_m028)),H013_c004_m010),H008_c011_m005),H014_c002_m003,H012_c004_m002),H011_c002_m011),H002_c006_m003),H006_c003_m001,(H010_c013_m002,H009_c006_m003),H003_c004_m018),H000_ancetre);
-tree PAUP_40 = [&R] (((((((H004_c002_m009,H013_c004_m010),((H008_c011_m005,H012_c004_m002),H014_c002_m003),H007_c015_m028),H005_c004_m010),H011_c002_m011),H002_c006_m003),H006_c003_m001,(H010_c013_m002,H009_c006_m003),H003_c004_m018),H000_ancetre);
-tree PAUP_41 = [&R] (((((((H004_c002_m009,((H008_c011_m005,(H014_c002_m003,H012_c004_m002)),H013_c004_m010)),H007_c015_m028),H005_c004_m010),H011_c002_m011),H002_c006_m003),H006_c003_m001,(H010_c013_m002,H009_c006_m003),H003_c004_m018),H000_ancetre);
-tree PAUP_42 = [&R] (((((((H004_c002_m009,H013_c004_m010),(((H008_c011_m005,H012_c004_m002),H014_c002_m003),H007_c015_m028)),H005_c004_m010),H011_c002_m011),H002_c006_m003),H006_c003_m001,(H010_c013_m002,H009_c006_m003),H003_c004_m018),H000_ancetre);
-tree PAUP_43 = [&R] (((((((H004_c002_m009,H013_c004_m010),(H005_c004_m010,H007_c015_m028)),H011_c002_m011),(H008_c011_m005,H014_c002_m003,H012_c004_m002)),H002_c006_m003),H006_c003_m001,(H010_c013_m002,H009_c006_m003),H003_c004_m018),H000_ancetre);
-tree PAUP_44 = [&R] (((((((H004_c002_m009,(H005_c004_m010,H007_c015_m028),H011_c002_m011),H013_c004_m010),H008_c011_m005),H014_c002_m003,H012_c004_m002),H002_c006_m003),H006_c003_m001,(H010_c013_m002,H009_c006_m003),H003_c004_m018),H000_ancetre);
-tree PAUP_45 = [&R] (((((((H004_c002_m009,((H005_c004_m010,H007_c015_m028),H011_c002_m011)),H013_c004_m010),H008_c011_m005),H014_c002_m003,H012_c004_m002),H002_c006_m003),H006_c003_m001,(H010_c013_m002,H009_c006_m003),H003_c004_m018),H000_ancetre);
-tree PAUP_46 = [&R] (((((((H004_c002_m009,((H008_c011_m005,(H014_c002_m003,H012_c004_m002)),H013_c004_m010)),H007_c015_m028),H005_c004_m010),H011_c002_m011),H003_c004_m018),H006_c003_m001,H002_c006_m003,(H010_c013_m002,H009_c006_m003)),H000_ancetre);
-tree PAUP_47 = [&R] (((((((H004_c002_m009,H011_c002_m011,H013_c004_m010),H005_c004_m010,H007_c015_m028),H014_c002_m003),H008_c011_m005,H012_c004_m002),H002_c006_m003),H006_c003_m001,(H010_c013_m002,H009_c006_m003),H003_c004_m018),H000_ancetre);
-tree PAUP_48 = [&R] ((((((H004_c002_m009,(H008_c011_m005,H014_c002_m003,H012_c004_m002),H013_c004_m010),(H005_c004_m010,H007_c015_m028)),H011_c002_m011),H002_c006_m003),H006_c003_m001,(H010_c013_m002,H009_c006_m003),H003_c004_m018),H000_ancetre);
-tree PAUP_49 = [&R] ((((((H004_c002_m009,(H008_c011_m005,H014_c002_m003,H012_c004_m002),H013_c004_m010),(H005_c004_m010,H007_c015_m028)),H011_c002_m011),H003_c004_m018),H006_c003_m001,H002_c006_m003,(H010_c013_m002,H009_c006_m003)),H000_ancetre);
-tree PAUP_50 = [&R] (((((((H004_c002_m009,H013_c004_m010),(((H008_c011_m005,H012_c004_m002),H014_c002_m003),H007_c015_m028)),H005_c004_m010),H011_c002_m011),H003_c004_m018),H006_c003_m001,H002_c006_m003,(H010_c013_m002,H009_c006_m003)),H000_ancetre);
-tree PAUP_51 = [&R] (((((H004_c002_m009,(H005_c004_m010,H007_c015_m028),(H008_c011_m005,H014_c002_m003,H012_c004_m002),H013_c004_m010),H011_c002_m011),H002_c006_m003),H006_c003_m001,(H010_c013_m002,H009_c006_m003),H003_c004_m018),H000_ancetre);
-tree PAUP_52 = [&R] (((((H004_c002_m009,(H005_c004_m010,H007_c015_m028),(H008_c011_m005,H014_c002_m003,H012_c004_m002),H013_c004_m010),H011_c002_m011),H003_c004_m018),H006_c003_m001,H002_c006_m003,(H010_c013_m002,H009_c006_m003)),H000_ancetre);
-tree PAUP_53 = [&R] ((((((H004_c002_m009,(H005_c004_m010,H007_c015_m028),(H008_c011_m005,H014_c002_m003,H012_c004_m002),H013_c004_m010),H011_c002_m011),H003_c004_m018),H002_c006_m003),H006_c003_m001,(H010_c013_m002,H009_c006_m003)),H000_ancetre);
-tree PAUP_54 = [&R] ((((((((H004_c002_m009,(H008_c011_m005,H014_c002_m003,H012_c004_m002),H013_c004_m010),H007_c015_m028),H005_c004_m010),H011_c002_m011),H003_c004_m018),H002_c006_m003),H006_c003_m001,(H010_c013_m002,H009_c006_m003)),H000_ancetre);
-tree PAUP_55 = [&R] ((((((((H004_c002_m009,((H008_c011_m005,(H014_c002_m003,H012_c004_m002)),H013_c004_m010)),H007_c015_m028),H005_c004_m010),H011_c002_m011),H003_c004_m018),H002_c006_m003),H006_c003_m001,(H010_c013_m002,H009_c006_m003)),H000_ancetre);
-tree PAUP_56 = [&R] (((((((H004_c002_m009,(H008_c011_m005,H014_c002_m003,H012_c004_m002),H013_c004_m010),(H005_c004_m010,H007_c015_m028)),H011_c002_m011),H003_c004_m018),H002_c006_m003),H006_c003_m001,(H010_c013_m002,H009_c006_m003)),H000_ancetre);
-tree PAUP_57 = [&R] (((((((H004_c002_m009,((H008_c011_m005,(H014_c002_m003,H012_c004_m002)),H013_c004_m010),H007_c015_m028),H005_c004_m010),H011_c002_m011),H003_c004_m018),H002_c006_m003),H006_c003_m001,(H010_c013_m002,H009_c006_m003)),H000_ancetre);
-tree PAUP_58 = [&R] (((((((H004_c002_m009,(((H008_c011_m005,H012_c004_m002),H014_c002_m003),H007_c015_m028),H013_c004_m010),H005_c004_m010),H011_c002_m011),H003_c004_m018),H002_c006_m003),H006_c003_m001,(H010_c013_m002,H009_c006_m003)),H000_ancetre);
-tree PAUP_59 = [&R] ((((((H004_c002_m009,((H008_c011_m005,(H014_c002_m003,H012_c004_m002)),H013_c004_m010),H007_c015_m028),H005_c004_m010),H011_c002_m011),H003_c004_m018),H006_c003_m001,H002_c006_m003,(H010_c013_m002,H009_c006_m003)),H000_ancetre);
-tree PAUP_60 = [&R] ((((((H004_c002_m009,(((H008_c011_m005,H012_c004_m002),H014_c002_m003),H007_c015_m028),H013_c004_m010),H005_c004_m010),H011_c002_m011),H003_c004_m018),H006_c003_m001,H002_c006_m003,(H010_c013_m002,H009_c006_m003)),H000_ancetre);
-tree PAUP_61 = [&R] ((((((((H004_c002_m009,((H008_c011_m005,(H014_c002_m003,H012_c004_m002)),H013_c004_m010)),H007_c015_m028),H005_c004_m010),H011_c002_m011),H002_c006_m003),H003_c004_m018),H006_c003_m001,(H010_c013_m002,H009_c006_m003)),H000_ancetre);
-tree PAUP_62 = [&R] (((((((H004_c002_m009,((H008_c011_m005,(H014_c002_m003,H012_c004_m002)),H013_c004_m010)),(H005_c004_m010,H007_c015_m028)),H011_c002_m011),H002_c006_m003),H003_c004_m018),H006_c003_m001,(H010_c013_m002,H009_c006_m003)),H000_ancetre);
-tree PAUP_63 = [&R] ((((((H004_c002_m009,(H005_c004_m010,H007_c015_m028),((H008_c011_m005,(H014_c002_m003,H012_c004_m002)),H013_c004_m010)),H011_c002_m011),H002_c006_m003),H003_c004_m018),H006_c003_m001,(H010_c013_m002,H009_c006_m003)),H000_ancetre);
-tree PAUP_64 = [&R] (((((((H004_c002_m009,(H005_c004_m010,H007_c015_m028),H013_c004_m010),(H008_c011_m005,H014_c002_m003,H012_c004_m002)),H011_c002_m011),H002_c006_m003),H003_c004_m018),H006_c003_m001,(H010_c013_m002,H009_c006_m003)),H000_ancetre);
-tree PAUP_65 = [&R] ((((((H004_c002_m009,(H005_c004_m010,((H008_c011_m005,H012_c004_m002),H014_c002_m003),H007_c015_m028),H013_c004_m010),H011_c002_m011),H002_c006_m003),H003_c004_m018),H006_c003_m001,(H010_c013_m002,H009_c006_m003)),H000_ancetre);
-tree PAUP_66 = [&R] ((((((H004_c002_m009,((H005_c004_m010,H007_c015_m028),((H008_c011_m005,H012_c004_m002),H014_c002_m003)),H013_c004_m010),H011_c002_m011),H002_c006_m003),H003_c004_m018),H006_c003_m001,(H010_c013_m002,H009_c006_m003)),H000_ancetre);
-tree PAUP_67 = [&R] ((((((((H004_c002_m009,H013_c004_m010),(((H008_c011_m005,H012_c004_m002),H014_c002_m003),H007_c015_m028)),H005_c004_m010),H011_c002_m011),H002_c006_m003),H003_c004_m018),H006_c003_m001,(H010_c013_m002,H009_c006_m003)),H000_ancetre);
-tree PAUP_68 = [&R] (((((((H004_c002_m009,H013_c004_m010),(H005_c004_m010,(((H008_c011_m005,H012_c004_m002),H014_c002_m003),H007_c015_m028))),H011_c002_m011),H002_c006_m003),H003_c004_m018),H006_c003_m001,(H010_c013_m002,H009_c006_m003)),H000_ancetre);
-tree PAUP_69 = [&R] ((((((((H004_c002_m009,H013_c004_m010),(((H008_c011_m005,H012_c004_m002),H014_c002_m003),H007_c015_m028)),H005_c004_m010),H011_c002_m011),H003_c004_m018),H002_c006_m003),H006_c003_m001,(H010_c013_m002,H009_c006_m003)),H000_ancetre);
-tree PAUP_70 = [&R] ((((((H004_c002_m009,((H008_c011_m005,(H014_c002_m003,H012_c004_m002)),H013_c004_m010),H007_c015_m028),H005_c004_m010),H011_c002_m011),H002_c006_m003),H006_c003_m001,(H010_c013_m002,H009_c006_m003),H003_c004_m018),H000_ancetre);
-tree PAUP_71 = [&R] (((((((((H004_c002_m009,H013_c004_m010),((H008_c011_m005,H012_c004_m002),H014_c002_m003)),H007_c015_m028),H005_c004_m010),H011_c002_m011),H003_c004_m018),H002_c006_m003),H006_c003_m001,(H010_c013_m002,H009_c006_m003)),H000_ancetre);
-tree PAUP_72 = [&R] ((((((H004_c002_m009,(((H008_c011_m005,H012_c004_m002),H014_c002_m003),H007_c015_m028),H013_c004_m010),H005_c004_m010),H011_c002_m011),H002_c006_m003),H006_c003_m001,(H010_c013_m002,H009_c006_m003),H003_c004_m018),H000_ancetre);
-tree PAUP_73 = [&R] (((((H004_c002_m009,(H005_c004_m010,H007_c015_m028),((H008_c011_m005,(H014_c002_m003,H012_c004_m002)),H013_c004_m010)),H011_c002_m011),H002_c006_m003),H006_c003_m001,(H010_c013_m002,H009_c006_m003),H003_c004_m018),H000_ancetre);
-tree PAUP_74 = [&R] (((((H004_c002_m009,((H005_c004_m010,H007_c015_m028),((H008_c011_m005,H012_c004_m002),H014_c002_m003)),H013_c004_m010),H011_c002_m011),H002_c006_m003),H006_c003_m001,(H010_c013_m002,H009_c006_m003),H003_c004_m018),H000_ancetre);
-tree PAUP_75 = [&R] (((((H004_c002_m009,(H005_c004_m010,((H008_c011_m005,H012_c004_m002),H014_c002_m003),H007_c015_m028),H013_c004_m010),H011_c002_m011),H002_c006_m003),H006_c003_m001,(H010_c013_m002,H009_c006_m003),H003_c004_m018),H000_ancetre);
-tree PAUP_76 = [&R] ((((((H004_c002_m009,H013_c004_m010),(H005_c004_m010,(((H008_c011_m005,H012_c004_m002),H014_c002_m003),H007_c015_m028))),H011_c002_m011),H002_c006_m003),H006_c003_m001,(H010_c013_m002,H009_c006_m003),H003_c004_m018),H000_ancetre);
-tree PAUP_77 = [&R] ((((((H004_c002_m009,((H008_c011_m005,(H014_c002_m003,H012_c004_m002)),H013_c004_m010)),(H005_c004_m010,H007_c015_m028)),H011_c002_m011),H002_c006_m003),H006_c003_m001,(H010_c013_m002,H009_c006_m003),H003_c004_m018),H000_ancetre);
-tree PAUP_78 = [&R] ((((((H004_c002_m009,((H008_c011_m005,(H014_c002_m003,H012_c004_m002)),H013_c004_m010)),(H005_c004_m010,H007_c015_m028)),H011_c002_m011),H003_c004_m018),H006_c003_m001,H002_c006_m003,(H010_c013_m002,H009_c006_m003)),H000_ancetre);
-tree PAUP_79 = [&R] (((((((H004_c002_m009,H013_c004_m010),((H008_c011_m005,H012_c004_m002),H014_c002_m003),H007_c015_m028),H005_c004_m010),H011_c002_m011),H003_c004_m018),H006_c003_m001,H002_c006_m003,(H010_c013_m002,H009_c006_m003)),H000_ancetre);
-tree PAUP_80 = [&R] (((((((H004_c002_m009,H013_c004_m010),(H005_c004_m010,(((H008_c011_m005,H012_c004_m002),H014_c002_m003),H007_c015_m028))),H011_c002_m011),H003_c004_m018),H002_c006_m003),H006_c003_m001,(H010_c013_m002,H009_c006_m003)),H000_ancetre);
-tree PAUP_81 = [&R] (((((H004_c002_m009,((H005_c004_m010,H007_c015_m028),((H008_c011_m005,H012_c004_m002),H014_c002_m003)),H013_c004_m010),H011_c002_m011),H003_c004_m018),H006_c003_m001,H002_c006_m003,(H010_c013_m002,H009_c006_m003)),H000_ancetre);
-tree PAUP_82 = [&R] ((((((H004_c002_m009,H013_c004_m010),(H005_c004_m010,(((H008_c011_m005,H012_c004_m002),H014_c002_m003),H007_c015_m028))),H011_c002_m011),H003_c004_m018),H006_c003_m001,H002_c006_m003,(H010_c013_m002,H009_c006_m003)),H000_ancetre);
-tree PAUP_83 = [&R] (((((H004_c002_m009,(H005_c004_m010,H007_c015_m028),((H008_c011_m005,(H014_c002_m003,H012_c004_m002)),H013_c004_m010)),H011_c002_m011),H003_c004_m018),H006_c003_m001,H002_c006_m003,(H010_c013_m002,H009_c006_m003)),H000_ancetre);
-tree PAUP_84 = [&R] (((((H004_c002_m009,(H005_c004_m010,((H008_c011_m005,H012_c004_m002),H014_c002_m003),H007_c015_m028),H013_c004_m010),H011_c002_m011),H003_c004_m018),H006_c003_m001,H002_c006_m003,(H010_c013_m002,H009_c006_m003)),H000_ancetre);
-tree PAUP_85 = [&R] (((((((H004_c002_m009,((H008_c011_m005,(H014_c002_m003,H012_c004_m002)),H013_c004_m010)),(H005_c004_m010,H007_c015_m028)),H011_c002_m011),H003_c004_m018),H002_c006_m003),H006_c003_m001,(H010_c013_m002,H009_c006_m003)),H000_ancetre);
-tree PAUP_86 = [&R] ((((((H004_c002_m009,(H005_c004_m010,H007_c015_m028),((H008_c011_m005,(H014_c002_m003,H012_c004_m002)),H013_c004_m010)),H011_c002_m011),H003_c004_m018),H002_c006_m003),H006_c003_m001,(H010_c013_m002,H009_c006_m003)),H000_ancetre);
-tree PAUP_87 = [&R] ((((((H004_c002_m009,((H005_c004_m010,H007_c015_m028),((H008_c011_m005,H012_c004_m002),H014_c002_m003)),H013_c004_m010),H011_c002_m011),H003_c004_m018),H002_c006_m003),H006_c003_m001,(H010_c013_m002,H009_c006_m003)),H000_ancetre);
-tree PAUP_88 = [&R] ((((((H004_c002_m009,(H005_c004_m010,((H008_c011_m005,H012_c004_m002),H014_c002_m003),H007_c015_m028),H013_c004_m010),H011_c002_m011),H003_c004_m018),H002_c006_m003),H006_c003_m001,(H010_c013_m002,H009_c006_m003)),H000_ancetre);
-tree PAUP_89 = [&R] ((((((((H004_c002_m009,H013_c004_m010),((H008_c011_m005,H012_c004_m002),H014_c002_m003),H007_c015_m028),H005_c004_m010),H011_c002_m011),H003_c004_m018),H002_c006_m003),H006_c003_m001,(H010_c013_m002,H009_c006_m003)),H000_ancetre);
-End;
diff --git a/Documentation/example_files/case_control/caco.paup b/Documentation/example_files/case_control/caco.paup
deleted file mode 100644
index 23125500521652fd5eb21c3576944d44ff9123db..0000000000000000000000000000000000000000
--- a/Documentation/example_files/case_control/caco.paup
+++ /dev/null
@@ -1,38 +0,0 @@
-#Nexus
-Begin data;
-dimension ntax=14 nchar=13;
-format symbols="0123456789" missing=?;
-matrix
-H004_c002_m009 1122211111222
-H006_c003_m001 2222122222222
-H005_c004_m010 1122211121122
-H008_c011_m005 2222211111212
-H011_c002_m011 1122211122222
-H002_c006_m003 2222211222222
-H010_c013_m002 2211222222222
-H009_c006_m003 2212222222212
-[H001_c124_m095 2222222222222]
-H003_c004_m018 1122222222222
-H014_c002_m003 2222211111122
-H013_c004_m010 1122211111212
-H007_c015_m028 1122211111122
-H012_c004_m002 2222211111222
-H000_ancetre 2222222222221
-;
-end;
-begin assumptions;
-ancstates *anc vector = 2222222222221;
-end;
-begin paup;
-set nowarnreset autoclose maxtrees = 1000 increase=no[ - Auto AutoInc = 100] monitor = no taxlabels = full
-root=lundberg warnroot=no opt=deltran [- acctran] ancstates=anc;
-hsearch;
-savetrees from=1 to=1000 file=test.tree root=yes format=altnexus;
-cleartrees nowarn=yes;
-gettrees rooted=yes file=test.tree;
-log file = test.res.log replace=yes [- no];
-describetrees all /plot=cladogram [- phylogram] brlens=yes rootmethod=lundberg apolist=yes;
-log stop;
-end;
-quit;
-[WARNING, this file is designed for bi-allelic data. If it is not the case, you may have to modify this input file, for example by specifying the ordered option in the typeset command in the assumption block]
diff --git a/Documentation/example_files/case_control/caco.phase b/Documentation/example_files/case_control/caco.phase
deleted file mode 100644
index aa8869fdc5a15d48ec57c1951cabf13fd65038ee..0000000000000000000000000000000000000000
--- a/Documentation/example_files/case_control/caco.phase
+++ /dev/null
@@ -1,604 +0,0 @@
-200
-12
-P 293 693 2319 2346 3697 3727 3848 4329 4384 4553 6297 6760
-SSSSSSSSSSSS
-1 1
-222222222222
-222222222222
-1 2
-112221112222
-222222222222
-1 3
-222222222222
-112221111121
-1 4
-222222222222
-222222222222
-1 5
-112222222222
-221222222221
-1 6
-112222222222
-112221112222
-1 7
-112222222222
-222222222222
-1 8
-222222222222
-222222222222
-1 9
-222222222222
-112221111112
-1 10
-222222222222
-112221111122
-1 11
-112221111112
-112221111121
-1 12
-222222222222
-222221111112
-1 13
-222222222222
-222222222222
-1 14
-222222222222
-222221111112
-1 15
-222222222222
-112221111112
-1 16
-112221112112
-112221112112
-1 17
-222221111112
-222222222222
-1 18
-112221112112
-222222222222
-1 19
-112221111112
-222222222222
-1 20
-222222222222
-112221112222
-1 21
-222222222222
-112221111122
-1 22
-112221112222
-222222222222
-1 23
-112222222222
-112221111112
-1 24
-222222222222
-112221111112
-1 25
-222222222222
-112222222222
-1 26
-222222222222
-112221111112
-1 27
-221122222222
-112221111122
-1 28
-222222222222
-112222222222
-1 29
-222222222222
-222222222222
-1 30
-222222222222
-222221122222
-1 31
-112222222222
-112221112222
-1 32
-222222222222
-222222222222
-1 33
-222222222222
-112222222222
-1 34
-112221112112
-112222222222
-1 35
-222222222222
-222221122222
-1 36
-112221111112
-222222222222
-1 37
-112221111121
-222222222222
-1 38
-112222222222
-222221111121
-1 39
-222222222222
-222221122222
-1 40
-112221111112
-112221111122
-1 41
-222222222222
-112221111122
-1 42
-222222222222
-112222222222
-1 43
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-222222222222
-1 44
-222222222222
-222221111121
-1 45
-222222222222
-222222222222
-1 46
-112221111112
-112222222222
-1 47
-112221111112
-112221111112
-1 48
-222222222222
-112221112112
-1 49
-222222222222
-112221112222
-1 50
-222222222222
-112221111112
-1 51
-222221111121
-222221111122
-1 52
-222222222222
-112221111112
-1 53
-222222222222
-112221111112
-1 54
-112221111112
-222222222222
-1 55
-222222222222
-222222222222
-1 56
-112221111121
-222222222222
-1 57
-221122222222
-222222222222
-1 58
-222221111112
-112221111121
-1 59
-112221111112
-222222222222
-1 60
-112222222222
-112221111112
-1 61
-112222222222
-112221111121
-1 62
-112222222222
-222222222222
-1 63
-222222222222
-112221111121
-1 64
-112221111112
-222222222222
-1 65
-222221111121
-112221112112
-1 66
-112221112112
-112221111122
-1 67
-112221111122
-222222222222
-1 68
-112222222222
-222222222222
-1 69
-112221112222
-112221112112
-1 70
-222222222222
-222222222222
-1 71
-112222222222
-222222222222
-1 72
-222222222222
-222222222222
-1 73
-112221112222
-112222222222
-1 74
-222222222222
-112221111121
-1 75
-222222222222
-112221112112
-1 76
-222222222222
-112221111112
-1 77
-222222222222
-222222222222
-1 78
-112221111112
-222222222222
-1 79
-112221111112
-222222222222
-1 80
-222222222222
-221222222221
-1 81
-222222222222
-222222222222
-1 82
-222222222222
-222222222222
-1 83
-222222222222
-112221111112
-1 84
-221222222221
-222222222222
-1 85
-222222222222
-222222222222
-1 86
-112221112222
-112221111112
-1 87
-112221111121
-222222222222
-1 88
-222222222222
-222222222222
-1 89
-222221111121
-112221111112
-1 90
-112221111122
-112222222222
-1 91
-112222222222
-222221111112
-1 92
-222222222222
-222222222222
-1 93
-222222222222
-112221112112
-1 94
-112221111121
-112221112222
-1 95
-222222222222
-222222222222
-1 96
-222222222222
-222222222222
-1 97
-222221111122
-222222222222
-1 98
-222222222222
-112221112222
-1 99
-112221111122
-222222222222
-1 100
-112221111112
-222212222222
-0 101
-222222222222
-222222222222
-0 102
-222222222222
-112221112112
-0 103
-112221112112
-222222222222
-0 104
-222222222222
-222221111122
-0 105
-221122222222
-222222222222
-0 106
-112221111112
-222222222222
-0 107
-222222222222
-222222222222
-0 108
-222222222222
-222222222222
-0 109
-222222222222
-222221111121
-0 110
-222222222222
-222222222222
-0 111
-222222222222
-222222222222
-0 112
-222222222222
-222222222222
-0 113
-222221111121
-222222222222
-0 114
-222222222222
-112221111112
-0 115
-112221111112
-222222222222
-0 116
-222222222222
-222222222222
-0 117
-221122222222
-222221122222
-0 118
-222222222222
-222222222222
-0 119
-112221111112
-222222222222
-0 120
-222222222222
-222221111112
-0 121
-222221111121
-222222222222
-0 122
-222222222222
-222222222222
-0 123
-221222222221
-112222222222
-0 124
-222221111112
-221222222221
-0 125
-112221111112
-222212222222
-0 126
-222222222222
-222222222222
-0 127
-222222222222
-222221122222
-0 128
-222222222222
-222222222222
-0 129
-222222222222
-222222222222
-0 130
-222222222222
-221122222222
-0 131
-222222222222
-222222222222
-0 132
-221222222221
-222222222222
-0 133
-222222222222
-222221111121
-0 134
-112222222222
-112221111121
-0 135
-221122222222
-222222222222
-0 136
-222221122222
-222222222222
-0 137
-221122222222
-222222222222
-0 138
-222222222222
-112221111121
-0 139
-222222222222
-222222222222
-0 140
-222222222222
-222222222222
-0 141
-222222222222
-222222222222
-0 142
-222222222222
-222222222222
-0 143
-222221122222
-112221111121
-0 144
-221122222222
-222221111121
-0 145
-222222222222
-222222222222
-0 146
-222222222222
-222222222222
-0 147
-222222222222
-222222222222
-0 148
-222222222222
-221122222222
-0 149
-222222222222
-222222222222
-0 150
-222222222222
-112221111121
-0 151
-222221111122
-112221112222
-0 152
-222222222222
-222221111121
-0 153
-222222222222
-222222222222
-0 154
-222221111122
-221222222221
-0 155
-222222222222
-112221111112
-0 156
-222222222222
-221122222222
-0 157
-222221111121
-222222222222
-0 158
-221122222222
-222222222222
-0 159
-222222222222
-222222222222
-0 160
-222221122222
-222222222222
-0 161
-222222222222
-222222222222
-0 162
-112221112112
-222222222222
-0 163
-112221111112
-222222222222
-0 164
-222222222222
-112221111112
-0 165
-222222222222
-222222222222
-0 166
-222222222222
-222222222222
-0 167
-222222222222
-222222222222
-0 168
-221222222221
-112221111122
-0 169
-112222222222
-112221112222
-0 170
-222221111121
-222221111121
-0 171
-222222222222
-221122222222
-0 172
-222222222222
-222222222222
-0 173
-112221111122
-222222222222
-0 174
-222222222222
-222222222222
-0 175
-222222222222
-222221111122
-0 176
-222222222222
-112221111112
-0 177
-222222222222
-222222222222
-0 178
-222222222222
-222222222222
-0 179
-112222222222
-222222222222
-0 180
-222222222222
-112221111112
-0 181
-222222222222
-222222222222
-0 182
-222222222222
-222222222222
-0 183
-221122222222
-222222222222
-0 184
-222222222222
-221122222222
-0 185
-222222222222
-112221111112
-0 186
-112221111112
-222222222222
-0 187
-222212222222
-221222222221
-0 188
-222222222222
-222222222222
-0 189
-222222222222
-112221111112
-0 190
-222222222222
-222222222222
-0 191
-222222222222
-112221111112
-0 192
-222222222222
-222221122222
-0 193
-221122222222
-112221111112
-0 194
-222222222222
-222222222222
-0 195
-222222222222
-222222222222
-0 196
-222222222222
-222221111121
-0 197
-222222222222
-112221112112
-0 198
-222221111121
-222212222222
-0 199
-222222222222
-222222222222
-0 200
-222222222222
-222222222222
diff --git a/Documentation/example_files/case_control/caco.phase.out b/Documentation/example_files/case_control/caco.phase.out
deleted file mode 100644
index 57cff6e7eeacb252e6576ea670e314353bc8834e..0000000000000000000000000000000000000000
--- a/Documentation/example_files/case_control/caco.phase.out
+++ /dev/null
@@ -1,1673 +0,0 @@
-*************************************************************
-**** ****
-**** Output from PHASE v2.0.2 ****
-**** Code by M Stephens, with contributions from N Li ****
-**** ****
-*************************************************************
-
-BEGIN COMMAND_LINE
-/home/cbardel/phase/phase.2.0.2.linux/PHASE -c-1 -MS caco.phase caco.out 100 1 100
-END COMMAND_LINE
-
-BEGIN OUTFILE_LIST
-caco.out_freqs : haplotype frequency estimates
-caco.out_pairs : most likely haplotype pairs for each individual
-caco.out_signif : p-value for testing cases vs controls
-caco.out_monitor : file for monitoring convergence
-END OUTFILE_LIST
-
-BEGIN INPUT_SUMMARY
-Number of Individuals: 200
-Number of Loci: 12
-Positions of loci: 293 693 2319 2346 3697 3727 3848 4329 4384 4553 6297 6760
-END INPUT_SUMMARY
-
-List of haplotypes found in best reconstruction, with counts.
-(See file caco.out_freqs for haplotype population frequency estimates)
-
-BEGIN LIST_SUMMARY
- 1 222222222222 219.000000
- 2 222221122222 9.000000
- 3 222221111122 6.000000
- 4 222221111121 16.000000
- 5 222221111112 5.000000
- 6 222212222222 4.000000
- 7 221222222221 9.000000
- 8 221122222222 15.000000
- 9 112222222222 22.000000
- 10 112221112222 13.000000
- 11 112221112112 14.000000
- 12 112221111122 11.000000
- 13 112221111121 14.000000
- 14 112221111112 43.000000
-END LIST_SUMMARY
-
-
-Summary of best reconstruction
-(numbers refer to the list of haplotypes given above)
-
-BEGIN BESTPAIRS_SUMMARY
-1: (1,1)
-2: (1,10)
-3: (1,13)
-4: (1,1)
-5: (7,9)
-6: (9,10)
-7: (1,9)
-8: (1,1)
-9: (1,14)
-10: (1,12)
-11: (13,14)
-12: (1,5)
-13: (1,1)
-14: (1,5)
-15: (1,14)
-16: (11,11)
-17: (1,5)
-18: (1,11)
-19: (1,14)
-20: (1,10)
-21: (1,12)
-22: (1,10)
-23: (9,14)
-24: (1,14)
-25: (1,9)
-26: (1,14)
-27: (8,12)
-28: (1,9)
-29: (1,1)
-30: (1,2)
-31: (9,10)
-32: (1,1)
-33: (1,9)
-34: (9,11)
-35: (1,2)
-36: (1,14)
-37: (1,13)
-38: (1,13)
-39: (1,2)
-40: (12,14)
-41: (1,12)
-42: (1,9)
-43: (1,1)
-44: (1,4)
-45: (1,1)
-46: (9,14)
-47: (14,14)
-48: (1,11)
-49: (1,10)
-50: (1,14)
-51: (3,4)
-52: (1,14)
-53: (1,14)
-54: (1,14)
-55: (1,1)
-56: (1,13)
-57: (1,8)
-58: (4,14)
-59: (1,14)
-60: (9,14)
-61: (9,13)
-62: (1,9)
-63: (1,13)
-64: (1,14)
-65: (4,11)
-66: (11,12)
-67: (1,12)
-68: (1,9)
-69: (10,11)
-70: (1,1)
-71: (1,9)
-72: (1,1)
-73: (9,10)
-74: (1,13)
-75: (1,11)
-76: (1,14)
-77: (1,1)
-78: (1,14)
-79: (1,14)
-80: (1,7)
-81: (1,1)
-82: (1,1)
-83: (1,14)
-84: (1,7)
-85: (1,1)
-86: (10,14)
-87: (1,13)
-88: (1,1)
-89: (4,14)
-90: (9,12)
-91: (1,14)
-92: (1,1)
-93: (1,11)
-94: (10,13)
-95: (1,1)
-96: (1,1)
-97: (1,3)
-98: (1,10)
-99: (1,12)
-100: (6,14)
-101: (1,1)
-102: (1,11)
-103: (1,11)
-104: (1,3)
-105: (1,8)
-106: (1,14)
-107: (1,1)
-108: (1,1)
-109: (1,4)
-110: (1,1)
-111: (1,1)
-112: (1,1)
-113: (1,4)
-114: (1,14)
-115: (1,14)
-116: (1,1)
-117: (2,8)
-118: (1,1)
-119: (1,14)
-120: (1,5)
-121: (1,4)
-122: (1,1)
-123: (7,9)
-124: (5,7)
-125: (6,14)
-126: (1,1)
-127: (1,2)
-128: (1,1)
-129: (1,1)
-130: (1,8)
-131: (1,1)
-132: (1,7)
-133: (1,4)
-134: (9,13)
-135: (1,8)
-136: (1,2)
-137: (1,8)
-138: (1,13)
-139: (1,1)
-140: (1,1)
-141: (1,1)
-142: (1,1)
-143: (2,13)
-144: (4,8)
-145: (1,1)
-146: (1,1)
-147: (1,1)
-148: (1,8)
-149: (1,1)
-150: (1,13)
-151: (3,10)
-152: (1,4)
-153: (1,1)
-154: (3,7)
-155: (1,14)
-156: (1,8)
-157: (1,4)
-158: (1,8)
-159: (1,1)
-160: (1,2)
-161: (1,1)
-162: (1,11)
-163: (1,14)
-164: (1,14)
-165: (1,1)
-166: (1,1)
-167: (1,1)
-168: (7,12)
-169: (9,10)
-170: (4,4)
-171: (1,8)
-172: (1,1)
-173: (1,12)
-174: (1,1)
-175: (1,3)
-176: (1,14)
-177: (1,1)
-178: (1,1)
-179: (1,9)
-180: (1,14)
-181: (1,1)
-182: (1,1)
-183: (1,8)
-184: (1,8)
-185: (1,14)
-186: (1,14)
-187: (6,7)
-188: (1,1)
-189: (1,14)
-190: (1,1)
-191: (1,14)
-192: (1,2)
-193: (8,14)
-194: (1,1)
-195: (1,1)
-196: (1,4)
-197: (1,11)
-198: (4,6)
-199: (1,1)
-200: (1,1)
-END BESTPAIRS_SUMMARY
-
-
-Haplotype estimates for each individual, with uncertain phases enclosed in ()
-and uncertain genotypes enclosed in []:
-
-BEGIN BESTPAIRS1
-1 1
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 2 2 2 2 2 2 2
-1 2
-2 2 2 2 2 2 2 2 2 2 2 2
-1 1 2 2 2 1 1 1 2 2 2 2
-1 3
-(2) (2) 2 2 2 2 2 2 2 2 2 2
-(1) (1) 2 2 2 1 1 1 1 1 2 1
-1 4
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 2 2 2 2 2 2 2
-1 5
-2 2 1 2 2 2 2 2 2 2 2 1
-1 1 2 2 2 2 2 2 2 2 2 2
-1 6
-1 1 2 2 2 2 2 2 2 2 2 2
-1 1 2 2 2 1 1 1 2 2 2 2
-1 7
-2 2 2 2 2 2 2 2 2 2 2 2
-1 1 2 2 2 2 2 2 2 2 2 2
-1 8
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 2 2 2 2 2 2 2
-1 9
-2 2 2 2 2 2 2 2 2 2 2 2
-1 1 2 2 2 1 1 1 1 1 1 2
-1 10
-2 2 2 2 2 2 2 2 2 2 2 2
-1 1 2 2 2 1 1 1 1 1 2 2
-1 11
-1 1 2 2 2 1 1 1 1 1 2 1
-1 1 2 2 2 1 1 1 1 1 1 2
-1 12
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 1 1 1 1 1 1 2
-1 13
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 2 2 2 2 2 2 2
-1 14
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 1 1 1 1 1 1 2
-1 15
-2 2 2 2 2 2 2 2 2 2 2 2
-1 1 2 2 2 1 1 1 1 1 1 2
-1 16
-1 1 2 2 2 1 1 1 2 1 1 2
-1 1 2 2 2 1 1 1 2 1 1 2
-1 17
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 1 1 1 1 1 1 2
-1 18
-2 2 2 2 2 2 2 2 2 2 2 2
-1 1 2 2 2 1 1 1 2 1 1 2
-1 19
-2 2 2 2 2 2 2 2 2 2 2 2
-1 1 2 2 2 1 1 1 1 1 1 2
-1 20
-2 2 2 2 2 2 2 2 2 2 2 2
-1 1 2 2 2 1 1 1 2 2 2 2
-1 21
-2 2 2 2 2 2 2 2 2 2 2 2
-1 1 2 2 2 1 1 1 1 1 2 2
-1 22
-2 2 2 2 2 2 2 2 2 2 2 2
-1 1 2 2 2 1 1 1 2 2 2 2
-1 23
-1 1 2 2 2 2 2 2 2 2 2 2
-1 1 2 2 2 1 1 1 1 1 1 2
-1 24
-2 2 2 2 2 2 2 2 2 2 2 2
-1 1 2 2 2 1 1 1 1 1 1 2
-1 25
-2 2 2 2 2 2 2 2 2 2 2 2
-1 1 2 2 2 2 2 2 2 2 2 2
-1 26
-2 2 2 2 2 2 2 2 2 2 2 2
-1 1 2 2 2 1 1 1 1 1 1 2
-1 27
-2 2 1 1 2 2 2 2 2 2 2 2
-1 1 2 2 2 1 1 1 1 1 2 2
-1 28
-2 2 2 2 2 2 2 2 2 2 2 2
-1 1 2 2 2 2 2 2 2 2 2 2
-1 29
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 2 2 2 2 2 2 2
-1 30
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 1 1 2 2 2 2 2
-1 31
-1 1 2 2 2 2 2 2 2 2 2 2
-1 1 2 2 2 1 1 1 2 2 2 2
-1 32
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 2 2 2 2 2 2 2
-1 33
-2 2 2 2 2 2 2 2 2 2 2 2
-1 1 2 2 2 2 2 2 2 2 2 2
-1 34
-1 1 2 2 2 2 2 2 2 2 2 2
-1 1 2 2 2 1 1 1 2 1 1 2
-1 35
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 1 1 2 2 2 2 2
-1 36
-2 2 2 2 2 2 2 2 2 2 2 2
-1 1 2 2 2 1 1 1 1 1 1 2
-1 37
-(2) (2) 2 2 2 2 2 2 2 2 2 2
-(1) (1) 2 2 2 1 1 1 1 1 2 1
-1 38
-(2) (2) 2 2 2 2 2 2 2 2 2 2
-(1) (1) 2 2 2 1 1 1 1 1 2 1
-1 39
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 1 1 2 2 2 2 2
-1 40
-1 1 2 2 2 1 1 1 1 1 2 2
-1 1 2 2 2 1 1 1 1 1 1 2
-1 41
-2 2 2 2 2 2 2 2 2 2 2 2
-1 1 2 2 2 1 1 1 1 1 2 2
-1 42
-2 2 2 2 2 2 2 2 2 2 2 2
-1 1 2 2 2 2 2 2 2 2 2 2
-1 43
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 2 2 2 2 2 2 2
-1 44
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 1 1 1 1 1 2 1
-1 45
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 2 2 2 2 2 2 2
-1 46
-1 1 2 2 2 2 2 2 2 2 2 2
-1 1 2 2 2 1 1 1 1 1 1 2
-1 47
-1 1 2 2 2 1 1 1 1 1 1 2
-1 1 2 2 2 1 1 1 1 1 1 2
-1 48
-2 2 2 2 2 2 2 2 2 2 2 2
-1 1 2 2 2 1 1 1 2 1 1 2
-1 49
-2 2 2 2 2 2 2 2 2 2 2 2
-1 1 2 2 2 1 1 1 2 2 2 2
-1 50
-2 2 2 2 2 2 2 2 2 2 2 2
-1 1 2 2 2 1 1 1 1 1 1 2
-1 51
-2 2 2 2 2 1 1 1 1 1 2 2
-2 2 2 2 2 1 1 1 1 1 2 1
-1 52
-2 2 2 2 2 2 2 2 2 2 2 2
-1 1 2 2 2 1 1 1 1 1 1 2
-1 53
-2 2 2 2 2 2 2 2 2 2 2 2
-1 1 2 2 2 1 1 1 1 1 1 2
-1 54
-2 2 2 2 2 2 2 2 2 2 2 2
-1 1 2 2 2 1 1 1 1 1 1 2
-1 55
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 2 2 2 2 2 2 2
-1 56
-(2) (2) 2 2 2 2 2 2 2 2 2 2
-(1) (1) 2 2 2 1 1 1 1 1 2 1
-1 57
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 1 1 2 2 2 2 2 2 2 2
-1 58
-(2) (2) 2 2 2 1 1 1 1 1 2 1
-(1) (1) 2 2 2 1 1 1 1 1 1 2
-1 59
-2 2 2 2 2 2 2 2 2 2 2 2
-1 1 2 2 2 1 1 1 1 1 1 2
-1 60
-1 1 2 2 2 2 2 2 2 2 2 2
-1 1 2 2 2 1 1 1 1 1 1 2
-1 61
-1 1 2 2 2 2 2 2 2 2 2 2
-1 1 2 2 2 1 1 1 1 1 2 1
-1 62
-2 2 2 2 2 2 2 2 2 2 2 2
-1 1 2 2 2 2 2 2 2 2 2 2
-1 63
-(2) (2) 2 2 2 2 2 2 2 2 2 2
-(1) (1) 2 2 2 1 1 1 1 1 2 1
-1 64
-2 2 2 2 2 2 2 2 2 2 2 2
-1 1 2 2 2 1 1 1 1 1 1 2
-1 65
-2 2 2 2 2 1 1 1 1 1 2 1
-1 1 2 2 2 1 1 1 2 1 1 2
-1 66
-1 1 2 2 2 1 1 1 2 1 1 2
-1 1 2 2 2 1 1 1 1 1 2 2
-1 67
-2 2 2 2 2 2 2 2 2 2 2 2
-1 1 2 2 2 1 1 1 1 1 2 2
-1 68
-2 2 2 2 2 2 2 2 2 2 2 2
-1 1 2 2 2 2 2 2 2 2 2 2
-1 69
-1 1 2 2 2 1 1 1 2 2 2 2
-1 1 2 2 2 1 1 1 2 1 1 2
-1 70
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 2 2 2 2 2 2 2
-1 71
-2 2 2 2 2 2 2 2 2 2 2 2
-1 1 2 2 2 2 2 2 2 2 2 2
-1 72
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 2 2 2 2 2 2 2
-1 73
-1 1 2 2 2 2 2 2 2 2 2 2
-1 1 2 2 2 1 1 1 2 2 2 2
-1 74
-(2) (2) 2 2 2 2 2 2 2 2 2 2
-(1) (1) 2 2 2 1 1 1 1 1 2 1
-1 75
-2 2 2 2 2 2 2 2 2 2 2 2
-1 1 2 2 2 1 1 1 2 1 1 2
-1 76
-2 2 2 2 2 2 2 2 2 2 2 2
-1 1 2 2 2 1 1 1 1 1 1 2
-1 77
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 2 2 2 2 2 2 2
-1 78
-2 2 2 2 2 2 2 2 2 2 2 2
-1 1 2 2 2 1 1 1 1 1 1 2
-1 79
-2 2 2 2 2 2 2 2 2 2 2 2
-1 1 2 2 2 1 1 1 1 1 1 2
-1 80
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 1 2 2 2 2 2 2 2 2 1
-1 81
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 2 2 2 2 2 2 2
-1 82
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 2 2 2 2 2 2 2
-1 83
-2 2 2 2 2 2 2 2 2 2 2 2
-1 1 2 2 2 1 1 1 1 1 1 2
-1 84
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 1 2 2 2 2 2 2 2 2 1
-1 85
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 2 2 2 2 2 2 2
-1 86
-1 1 2 2 2 1 1 1 2 2 2 2
-1 1 2 2 2 1 1 1 1 1 1 2
-1 87
-(2) (2) 2 2 2 2 2 2 2 2 2 2
-(1) (1) 2 2 2 1 1 1 1 1 2 1
-1 88
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 2 2 2 2 2 2 2
-1 89
-(2) (2) 2 2 2 1 1 1 1 1 2 1
-(1) (1) 2 2 2 1 1 1 1 1 1 2
-1 90
-1 1 2 2 2 2 2 2 2 2 2 2
-1 1 2 2 2 1 1 1 1 1 2 2
-1 91
-2 2 2 2 2 2 2 2 2 2 2 2
-1 1 2 2 2 1 1 1 1 1 1 2
-1 92
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 2 2 2 2 2 2 2
-1 93
-2 2 2 2 2 2 2 2 2 2 2 2
-1 1 2 2 2 1 1 1 2 1 1 2
-1 94
-1 1 2 2 2 1 1 1 2 2 2 2
-1 1 2 2 2 1 1 1 1 1 2 1
-1 95
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 2 2 2 2 2 2 2
-1 96
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 2 2 2 2 2 2 2
-1 97
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 1 1 1 1 1 2 2
-1 98
-2 2 2 2 2 2 2 2 2 2 2 2
-1 1 2 2 2 1 1 1 2 2 2 2
-1 99
-2 2 2 2 2 2 2 2 2 2 2 2
-1 1 2 2 2 1 1 1 1 1 2 2
-1 100
-2 2 2 2 1 2 2 2 2 2 2 2
-1 1 2 2 2 1 1 1 1 1 1 2
-0 101
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 2 2 2 2 2 2 2
-0 102
-2 2 2 2 2 2 2 2 2 2 2 2
-1 1 2 2 2 1 1 1 2 1 1 2
-0 103
-2 2 2 2 2 2 2 2 2 2 2 2
-1 1 2 2 2 1 1 1 2 1 1 2
-0 104
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 1 1 1 1 1 2 2
-0 105
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 1 1 2 2 2 2 2 2 2 2
-0 106
-2 2 2 2 2 2 2 2 2 2 2 2
-1 1 2 2 2 1 1 1 1 1 1 2
-0 107
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 2 2 2 2 2 2 2
-0 108
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 2 2 2 2 2 2 2
-0 109
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 1 1 1 1 1 2 1
-0 110
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 2 2 2 2 2 2 2
-0 111
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 2 2 2 2 2 2 2
-0 112
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 2 2 2 2 2 2 2
-0 113
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 1 1 1 1 1 2 1
-0 114
-2 2 2 2 2 2 2 2 2 2 2 2
-1 1 2 2 2 1 1 1 1 1 1 2
-0 115
-2 2 2 2 2 2 2 2 2 2 2 2
-1 1 2 2 2 1 1 1 1 1 1 2
-0 116
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 2 2 2 2 2 2 2
-0 117
-2 2 2 2 2 1 1 2 2 2 2 2
-2 2 1 1 2 2 2 2 2 2 2 2
-0 118
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 2 2 2 2 2 2 2
-0 119
-2 2 2 2 2 2 2 2 2 2 2 2
-1 1 2 2 2 1 1 1 1 1 1 2
-0 120
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 1 1 1 1 1 1 2
-0 121
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 1 1 1 1 1 2 1
-0 122
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 2 2 2 2 2 2 2
-0 123
-2 2 1 2 2 2 2 2 2 2 2 1
-1 1 2 2 2 2 2 2 2 2 2 2
-0 124
-2 2 2 2 2 1 1 1 1 1 1 2
-2 2 1 2 2 2 2 2 2 2 2 1
-0 125
-2 2 2 2 1 2 2 2 2 2 2 2
-1 1 2 2 2 1 1 1 1 1 1 2
-0 126
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 2 2 2 2 2 2 2
-0 127
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 1 1 2 2 2 2 2
-0 128
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 2 2 2 2 2 2 2
-0 129
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 2 2 2 2 2 2 2
-0 130
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 1 1 2 2 2 2 2 2 2 2
-0 131
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 2 2 2 2 2 2 2
-0 132
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 1 2 2 2 2 2 2 2 2 1
-0 133
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 1 1 1 1 1 2 1
-0 134
-1 1 2 2 2 2 2 2 2 2 2 2
-1 1 2 2 2 1 1 1 1 1 2 1
-0 135
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 1 1 2 2 2 2 2 2 2 2
-0 136
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 1 1 2 2 2 2 2
-0 137
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 1 1 2 2 2 2 2 2 2 2
-0 138
-(2) (2) 2 2 2 2 2 2 2 2 2 2
-(1) (1) 2 2 2 1 1 1 1 1 2 1
-0 139
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 2 2 2 2 2 2 2
-0 140
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 2 2 2 2 2 2 2
-0 141
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 2 2 2 2 2 2 2
-0 142
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 2 2 2 2 2 2 2
-0 143
-2 2 2 2 2 1 1 2 2 2 2 2
-1 1 2 2 2 1 1 1 1 1 2 1
-0 144
-2 2 2 2 2 1 1 1 1 1 2 1
-2 2 1 1 2 2 2 2 2 2 2 2
-0 145
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 2 2 2 2 2 2 2
-0 146
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 2 2 2 2 2 2 2
-0 147
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 2 2 2 2 2 2 2
-0 148
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 1 1 2 2 2 2 2 2 2 2
-0 149
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 2 2 2 2 2 2 2
-0 150
-(2) (2) 2 2 2 2 2 2 2 2 2 2
-(1) (1) 2 2 2 1 1 1 1 1 2 1
-0 151
-2 2 2 2 2 1 1 1 1 1 2 2
-1 1 2 2 2 1 1 1 2 2 2 2
-0 152
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 1 1 1 1 1 2 1
-0 153
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 2 2 2 2 2 2 2
-0 154
-2 2 2 2 2 1 1 1 1 1 2 2
-2 2 1 2 2 2 2 2 2 2 2 1
-0 155
-2 2 2 2 2 2 2 2 2 2 2 2
-1 1 2 2 2 1 1 1 1 1 1 2
-0 156
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 1 1 2 2 2 2 2 2 2 2
-0 157
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 1 1 1 1 1 2 1
-0 158
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 1 1 2 2 2 2 2 2 2 2
-0 159
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 2 2 2 2 2 2 2
-0 160
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 1 1 2 2 2 2 2
-0 161
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 2 2 2 2 2 2 2
-0 162
-2 2 2 2 2 2 2 2 2 2 2 2
-1 1 2 2 2 1 1 1 2 1 1 2
-0 163
-2 2 2 2 2 2 2 2 2 2 2 2
-1 1 2 2 2 1 1 1 1 1 1 2
-0 164
-2 2 2 2 2 2 2 2 2 2 2 2
-1 1 2 2 2 1 1 1 1 1 1 2
-0 165
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 2 2 2 2 2 2 2
-0 166
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 2 2 2 2 2 2 2
-0 167
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 2 2 2 2 2 2 2
-0 168
-2 2 1 2 2 2 2 2 2 2 2 1
-1 1 2 2 2 1 1 1 1 1 2 2
-0 169
-1 1 2 2 2 2 2 2 2 2 2 2
-1 1 2 2 2 1 1 1 2 2 2 2
-0 170
-2 2 2 2 2 1 1 1 1 1 2 1
-2 2 2 2 2 1 1 1 1 1 2 1
-0 171
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 1 1 2 2 2 2 2 2 2 2
-0 172
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 2 2 2 2 2 2 2
-0 173
-2 2 2 2 2 2 2 2 2 2 2 2
-1 1 2 2 2 1 1 1 1 1 2 2
-0 174
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 2 2 2 2 2 2 2
-0 175
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 1 1 1 1 1 2 2
-0 176
-2 2 2 2 2 2 2 2 2 2 2 2
-1 1 2 2 2 1 1 1 1 1 1 2
-0 177
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 2 2 2 2 2 2 2
-0 178
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 2 2 2 2 2 2 2
-0 179
-2 2 2 2 2 2 2 2 2 2 2 2
-1 1 2 2 2 2 2 2 2 2 2 2
-0 180
-2 2 2 2 2 2 2 2 2 2 2 2
-1 1 2 2 2 1 1 1 1 1 1 2
-0 181
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 2 2 2 2 2 2 2
-0 182
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 2 2 2 2 2 2 2
-0 183
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 1 1 2 2 2 2 2 2 2 2
-0 184
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 1 1 2 2 2 2 2 2 2 2
-0 185
-2 2 2 2 2 2 2 2 2 2 2 2
-1 1 2 2 2 1 1 1 1 1 1 2
-0 186
-2 2 2 2 2 2 2 2 2 2 2 2
-1 1 2 2 2 1 1 1 1 1 1 2
-0 187
-2 2 2 2 1 2 2 2 2 2 2 2
-2 2 1 2 2 2 2 2 2 2 2 1
-0 188
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 2 2 2 2 2 2 2
-0 189
-2 2 2 2 2 2 2 2 2 2 2 2
-1 1 2 2 2 1 1 1 1 1 1 2
-0 190
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 2 2 2 2 2 2 2
-0 191
-2 2 2 2 2 2 2 2 2 2 2 2
-1 1 2 2 2 1 1 1 1 1 1 2
-0 192
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 1 1 2 2 2 2 2
-0 193
-2 2 1 1 2 2 2 2 2 2 2 2
-1 1 2 2 2 1 1 1 1 1 1 2
-0 194
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 2 2 2 2 2 2 2
-0 195
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 2 2 2 2 2 2 2
-0 196
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 1 1 1 1 1 2 1
-0 197
-2 2 2 2 2 2 2 2 2 2 2 2
-1 1 2 2 2 1 1 1 2 1 1 2
-0 198
-2 2 2 2 2 1 1 1 1 1 2 1
-2 2 2 2 1 2 2 2 2 2 2 2
-0 199
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 2 2 2 2 2 2 2
-0 200
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 2 2 2 2 2 2 2
-END BESTPAIRS1
-
-
-Haplotype estimates for each individual, with uncertain phases enclosed in ()
-and uncertain genotypes enclosed in []
-with phase known positions indicated by =
-
-BEGIN BESTPAIRS2
-1 1
-= = = = = = = = = = = =
-= = = = = = = = = = = =
-1 2
-2 2 = = = 2 2 2 = = = =
-1 1 = = = 1 1 1 = = = =
-1 3
-(2) (2) = = = 2 2 2 2 2 = 2
-(1) (1) = = = 1 1 1 1 1 = 1
-1 4
-= = = = = = = = = = = =
-= = = = = = = = = = = =
-1 5
-2 2 1 = = = = = = = = 1
-1 1 2 = = = = = = = = 2
-1 6
-= = = = = 2 2 2 = = = =
-= = = = = 1 1 1 = = = =
-1 7
-2 2 = = = = = = = = = =
-1 1 = = = = = = = = = =
-1 8
-= = = = = = = = = = = =
-= = = = = = = = = = = =
-1 9
-2 2 = = = 2 2 2 2 2 2 =
-1 1 = = = 1 1 1 1 1 1 =
-1 10
-2 2 = = = 2 2 2 2 2 = =
-1 1 = = = 1 1 1 1 1 = =
-1 11
-= = = = = = = = = = 2 1
-= = = = = = = = = = 1 2
-1 12
-= = = = = 2 2 2 2 2 2 =
-= = = = = 1 1 1 1 1 1 =
-1 13
-= = = = = = = = = = = =
-= = = = = = = = = = = =
-1 14
-= = = = = 2 2 2 2 2 2 =
-= = = = = 1 1 1 1 1 1 =
-1 15
-2 2 = = = 2 2 2 2 2 2 =
-1 1 = = = 1 1 1 1 1 1 =
-1 16
-= = = = = = = = = = = =
-= = = = = = = = = = = =
-1 17
-= = = = = 2 2 2 2 2 2 =
-= = = = = 1 1 1 1 1 1 =
-1 18
-2 2 = = = 2 2 2 = 2 2 =
-1 1 = = = 1 1 1 = 1 1 =
-1 19
-2 2 = = = 2 2 2 2 2 2 =
-1 1 = = = 1 1 1 1 1 1 =
-1 20
-2 2 = = = 2 2 2 = = = =
-1 1 = = = 1 1 1 = = = =
-1 21
-2 2 = = = 2 2 2 2 2 = =
-1 1 = = = 1 1 1 1 1 = =
-1 22
-2 2 = = = 2 2 2 = = = =
-1 1 = = = 1 1 1 = = = =
-1 23
-= = = = = 2 2 2 2 2 2 =
-= = = = = 1 1 1 1 1 1 =
-1 24
-2 2 = = = 2 2 2 2 2 2 =
-1 1 = = = 1 1 1 1 1 1 =
-1 25
-2 2 = = = = = = = = = =
-1 1 = = = = = = = = = =
-1 26
-2 2 = = = 2 2 2 2 2 2 =
-1 1 = = = 1 1 1 1 1 1 =
-1 27
-2 2 1 1 = 2 2 2 2 2 = =
-1 1 2 2 = 1 1 1 1 1 = =
-1 28
-2 2 = = = = = = = = = =
-1 1 = = = = = = = = = =
-1 29
-= = = = = = = = = = = =
-= = = = = = = = = = = =
-1 30
-= = = = = 2 2 = = = = =
-= = = = = 1 1 = = = = =
-1 31
-= = = = = 2 2 2 = = = =
-= = = = = 1 1 1 = = = =
-1 32
-= = = = = = = = = = = =
-= = = = = = = = = = = =
-1 33
-2 2 = = = = = = = = = =
-1 1 = = = = = = = = = =
-1 34
-= = = = = 2 2 2 = 2 2 =
-= = = = = 1 1 1 = 1 1 =
-1 35
-= = = = = 2 2 = = = = =
-= = = = = 1 1 = = = = =
-1 36
-2 2 = = = 2 2 2 2 2 2 =
-1 1 = = = 1 1 1 1 1 1 =
-1 37
-(2) (2) = = = 2 2 2 2 2 = 2
-(1) (1) = = = 1 1 1 1 1 = 1
-1 38
-(2) (2) = = = 2 2 2 2 2 = 2
-(1) (1) = = = 1 1 1 1 1 = 1
-1 39
-= = = = = 2 2 = = = = =
-= = = = = 1 1 = = = = =
-1 40
-= = = = = = = = = = 2 =
-= = = = = = = = = = 1 =
-1 41
-2 2 = = = 2 2 2 2 2 = =
-1 1 = = = 1 1 1 1 1 = =
-1 42
-2 2 = = = = = = = = = =
-1 1 = = = = = = = = = =
-1 43
-= = = = = = = = = = = =
-= = = = = = = = = = = =
-1 44
-= = = = = 2 2 2 2 2 = 2
-= = = = = 1 1 1 1 1 = 1
-1 45
-= = = = = = = = = = = =
-= = = = = = = = = = = =
-1 46
-= = = = = 2 2 2 2 2 2 =
-= = = = = 1 1 1 1 1 1 =
-1 47
-= = = = = = = = = = = =
-= = = = = = = = = = = =
-1 48
-2 2 = = = 2 2 2 = 2 2 =
-1 1 = = = 1 1 1 = 1 1 =
-1 49
-2 2 = = = 2 2 2 = = = =
-1 1 = = = 1 1 1 = = = =
-1 50
-2 2 = = = 2 2 2 2 2 2 =
-1 1 = = = 1 1 1 1 1 1 =
-1 51
-= = = = = = = = = = = 2
-= = = = = = = = = = = 1
-1 52
-2 2 = = = 2 2 2 2 2 2 =
-1 1 = = = 1 1 1 1 1 1 =
-1 53
-2 2 = = = 2 2 2 2 2 2 =
-1 1 = = = 1 1 1 1 1 1 =
-1 54
-2 2 = = = 2 2 2 2 2 2 =
-1 1 = = = 1 1 1 1 1 1 =
-1 55
-= = = = = = = = = = = =
-= = = = = = = = = = = =
-1 56
-(2) (2) = = = 2 2 2 2 2 = 2
-(1) (1) = = = 1 1 1 1 1 = 1
-1 57
-= = 2 2 = = = = = = = =
-= = 1 1 = = = = = = = =
-1 58
-(2) (2) = = = = = = = = 2 1
-(1) (1) = = = = = = = = 1 2
-1 59
-2 2 = = = 2 2 2 2 2 2 =
-1 1 = = = 1 1 1 1 1 1 =
-1 60
-= = = = = 2 2 2 2 2 2 =
-= = = = = 1 1 1 1 1 1 =
-1 61
-= = = = = 2 2 2 2 2 = 2
-= = = = = 1 1 1 1 1 = 1
-1 62
-2 2 = = = = = = = = = =
-1 1 = = = = = = = = = =
-1 63
-(2) (2) = = = 2 2 2 2 2 = 2
-(1) (1) = = = 1 1 1 1 1 = 1
-1 64
-2 2 = = = 2 2 2 2 2 2 =
-1 1 = = = 1 1 1 1 1 1 =
-1 65
-2 2 = = = = = = 1 = 2 1
-1 1 = = = = = = 2 = 1 2
-1 66
-= = = = = = = = 2 = 1 =
-= = = = = = = = 1 = 2 =
-1 67
-2 2 = = = 2 2 2 2 2 = =
-1 1 = = = 1 1 1 1 1 = =
-1 68
-2 2 = = = = = = = = = =
-1 1 = = = = = = = = = =
-1 69
-= = = = = = = = = 2 2 =
-= = = = = = = = = 1 1 =
-1 70
-= = = = = = = = = = = =
-= = = = = = = = = = = =
-1 71
-2 2 = = = = = = = = = =
-1 1 = = = = = = = = = =
-1 72
-= = = = = = = = = = = =
-= = = = = = = = = = = =
-1 73
-= = = = = 2 2 2 = = = =
-= = = = = 1 1 1 = = = =
-1 74
-(2) (2) = = = 2 2 2 2 2 = 2
-(1) (1) = = = 1 1 1 1 1 = 1
-1 75
-2 2 = = = 2 2 2 = 2 2 =
-1 1 = = = 1 1 1 = 1 1 =
-1 76
-2 2 = = = 2 2 2 2 2 2 =
-1 1 = = = 1 1 1 1 1 1 =
-1 77
-= = = = = = = = = = = =
-= = = = = = = = = = = =
-1 78
-2 2 = = = 2 2 2 2 2 2 =
-1 1 = = = 1 1 1 1 1 1 =
-1 79
-2 2 = = = 2 2 2 2 2 2 =
-1 1 = = = 1 1 1 1 1 1 =
-1 80
-= = 2 = = = = = = = = 2
-= = 1 = = = = = = = = 1
-1 81
-= = = = = = = = = = = =
-= = = = = = = = = = = =
-1 82
-= = = = = = = = = = = =
-= = = = = = = = = = = =
-1 83
-2 2 = = = 2 2 2 2 2 2 =
-1 1 = = = 1 1 1 1 1 1 =
-1 84
-= = 2 = = = = = = = = 2
-= = 1 = = = = = = = = 1
-1 85
-= = = = = = = = = = = =
-= = = = = = = = = = = =
-1 86
-= = = = = = = = 2 2 2 =
-= = = = = = = = 1 1 1 =
-1 87
-(2) (2) = = = 2 2 2 2 2 = 2
-(1) (1) = = = 1 1 1 1 1 = 1
-1 88
-= = = = = = = = = = = =
-= = = = = = = = = = = =
-1 89
-(2) (2) = = = = = = = = 2 1
-(1) (1) = = = = = = = = 1 2
-1 90
-= = = = = 2 2 2 2 2 = =
-= = = = = 1 1 1 1 1 = =
-1 91
-2 2 = = = 2 2 2 2 2 2 =
-1 1 = = = 1 1 1 1 1 1 =
-1 92
-= = = = = = = = = = = =
-= = = = = = = = = = = =
-1 93
-2 2 = = = 2 2 2 = 2 2 =
-1 1 = = = 1 1 1 = 1 1 =
-1 94
-= = = = = = = = 2 2 = 2
-= = = = = = = = 1 1 = 1
-1 95
-= = = = = = = = = = = =
-= = = = = = = = = = = =
-1 96
-= = = = = = = = = = = =
-= = = = = = = = = = = =
-1 97
-= = = = = 2 2 2 2 2 = =
-= = = = = 1 1 1 1 1 = =
-1 98
-2 2 = = = 2 2 2 = = = =
-1 1 = = = 1 1 1 = = = =
-1 99
-2 2 = = = 2 2 2 2 2 = =
-1 1 = = = 1 1 1 1 1 = =
-1 100
-2 2 = = 1 2 2 2 2 2 2 =
-1 1 = = 2 1 1 1 1 1 1 =
-0 101
-= = = = = = = = = = = =
-= = = = = = = = = = = =
-0 102
-2 2 = = = 2 2 2 = 2 2 =
-1 1 = = = 1 1 1 = 1 1 =
-0 103
-2 2 = = = 2 2 2 = 2 2 =
-1 1 = = = 1 1 1 = 1 1 =
-0 104
-= = = = = 2 2 2 2 2 = =
-= = = = = 1 1 1 1 1 = =
-0 105
-= = 2 2 = = = = = = = =
-= = 1 1 = = = = = = = =
-0 106
-2 2 = = = 2 2 2 2 2 2 =
-1 1 = = = 1 1 1 1 1 1 =
-0 107
-= = = = = = = = = = = =
-= = = = = = = = = = = =
-0 108
-= = = = = = = = = = = =
-= = = = = = = = = = = =
-0 109
-= = = = = 2 2 2 2 2 = 2
-= = = = = 1 1 1 1 1 = 1
-0 110
-= = = = = = = = = = = =
-= = = = = = = = = = = =
-0 111
-= = = = = = = = = = = =
-= = = = = = = = = = = =
-0 112
-= = = = = = = = = = = =
-= = = = = = = = = = = =
-0 113
-= = = = = 2 2 2 2 2 = 2
-= = = = = 1 1 1 1 1 = 1
-0 114
-2 2 = = = 2 2 2 2 2 2 =
-1 1 = = = 1 1 1 1 1 1 =
-0 115
-2 2 = = = 2 2 2 2 2 2 =
-1 1 = = = 1 1 1 1 1 1 =
-0 116
-= = = = = = = = = = = =
-= = = = = = = = = = = =
-0 117
-= = 2 2 = 1 1 = = = = =
-= = 1 1 = 2 2 = = = = =
-0 118
-= = = = = = = = = = = =
-= = = = = = = = = = = =
-0 119
-2 2 = = = 2 2 2 2 2 2 =
-1 1 = = = 1 1 1 1 1 1 =
-0 120
-= = = = = 2 2 2 2 2 2 =
-= = = = = 1 1 1 1 1 1 =
-0 121
-= = = = = 2 2 2 2 2 = 2
-= = = = = 1 1 1 1 1 = 1
-0 122
-= = = = = = = = = = = =
-= = = = = = = = = = = =
-0 123
-2 2 1 = = = = = = = = 1
-1 1 2 = = = = = = = = 2
-0 124
-= = 2 = = 1 1 1 1 1 1 2
-= = 1 = = 2 2 2 2 2 2 1
-0 125
-2 2 = = 1 2 2 2 2 2 2 =
-1 1 = = 2 1 1 1 1 1 1 =
-0 126
-= = = = = = = = = = = =
-= = = = = = = = = = = =
-0 127
-= = = = = 2 2 = = = = =
-= = = = = 1 1 = = = = =
-0 128
-= = = = = = = = = = = =
-= = = = = = = = = = = =
-0 129
-= = = = = = = = = = = =
-= = = = = = = = = = = =
-0 130
-= = 2 2 = = = = = = = =
-= = 1 1 = = = = = = = =
-0 131
-= = = = = = = = = = = =
-= = = = = = = = = = = =
-0 132
-= = 2 = = = = = = = = 2
-= = 1 = = = = = = = = 1
-0 133
-= = = = = 2 2 2 2 2 = 2
-= = = = = 1 1 1 1 1 = 1
-0 134
-= = = = = 2 2 2 2 2 = 2
-= = = = = 1 1 1 1 1 = 1
-0 135
-= = 2 2 = = = = = = = =
-= = 1 1 = = = = = = = =
-0 136
-= = = = = 2 2 = = = = =
-= = = = = 1 1 = = = = =
-0 137
-= = 2 2 = = = = = = = =
-= = 1 1 = = = = = = = =
-0 138
-(2) (2) = = = 2 2 2 2 2 = 2
-(1) (1) = = = 1 1 1 1 1 = 1
-0 139
-= = = = = = = = = = = =
-= = = = = = = = = = = =
-0 140
-= = = = = = = = = = = =
-= = = = = = = = = = = =
-0 141
-= = = = = = = = = = = =
-= = = = = = = = = = = =
-0 142
-= = = = = = = = = = = =
-= = = = = = = = = = = =
-0 143
-2 2 = = = = = 2 2 2 = 2
-1 1 = = = = = 1 1 1 = 1
-0 144
-= = 2 2 = 1 1 1 1 1 = 1
-= = 1 1 = 2 2 2 2 2 = 2
-0 145
-= = = = = = = = = = = =
-= = = = = = = = = = = =
-0 146
-= = = = = = = = = = = =
-= = = = = = = = = = = =
-0 147
-= = = = = = = = = = = =
-= = = = = = = = = = = =
-0 148
-= = 2 2 = = = = = = = =
-= = 1 1 = = = = = = = =
-0 149
-= = = = = = = = = = = =
-= = = = = = = = = = = =
-0 150
-(2) (2) = = = 2 2 2 2 2 = 2
-(1) (1) = = = 1 1 1 1 1 = 1
-0 151
-2 2 = = = = = = 1 1 = =
-1 1 = = = = = = 2 2 = =
-0 152
-= = = = = 2 2 2 2 2 = 2
-= = = = = 1 1 1 1 1 = 1
-0 153
-= = = = = = = = = = = =
-= = = = = = = = = = = =
-0 154
-= = 2 = = 1 1 1 1 1 = 2
-= = 1 = = 2 2 2 2 2 = 1
-0 155
-2 2 = = = 2 2 2 2 2 2 =
-1 1 = = = 1 1 1 1 1 1 =
-0 156
-= = 2 2 = = = = = = = =
-= = 1 1 = = = = = = = =
-0 157
-= = = = = 2 2 2 2 2 = 2
-= = = = = 1 1 1 1 1 = 1
-0 158
-= = 2 2 = = = = = = = =
-= = 1 1 = = = = = = = =
-0 159
-= = = = = = = = = = = =
-= = = = = = = = = = = =
-0 160
-= = = = = 2 2 = = = = =
-= = = = = 1 1 = = = = =
-0 161
-= = = = = = = = = = = =
-= = = = = = = = = = = =
-0 162
-2 2 = = = 2 2 2 = 2 2 =
-1 1 = = = 1 1 1 = 1 1 =
-0 163
-2 2 = = = 2 2 2 2 2 2 =
-1 1 = = = 1 1 1 1 1 1 =
-0 164
-2 2 = = = 2 2 2 2 2 2 =
-1 1 = = = 1 1 1 1 1 1 =
-0 165
-= = = = = = = = = = = =
-= = = = = = = = = = = =
-0 166
-= = = = = = = = = = = =
-= = = = = = = = = = = =
-0 167
-= = = = = = = = = = = =
-= = = = = = = = = = = =
-0 168
-2 2 1 = = 2 2 2 2 2 = 1
-1 1 2 = = 1 1 1 1 1 = 2
-0 169
-= = = = = 2 2 2 = = = =
-= = = = = 1 1 1 = = = =
-0 170
-= = = = = = = = = = = =
-= = = = = = = = = = = =
-0 171
-= = 2 2 = = = = = = = =
-= = 1 1 = = = = = = = =
-0 172
-= = = = = = = = = = = =
-= = = = = = = = = = = =
-0 173
-2 2 = = = 2 2 2 2 2 = =
-1 1 = = = 1 1 1 1 1 = =
-0 174
-= = = = = = = = = = = =
-= = = = = = = = = = = =
-0 175
-= = = = = 2 2 2 2 2 = =
-= = = = = 1 1 1 1 1 = =
-0 176
-2 2 = = = 2 2 2 2 2 2 =
-1 1 = = = 1 1 1 1 1 1 =
-0 177
-= = = = = = = = = = = =
-= = = = = = = = = = = =
-0 178
-= = = = = = = = = = = =
-= = = = = = = = = = = =
-0 179
-2 2 = = = = = = = = = =
-1 1 = = = = = = = = = =
-0 180
-2 2 = = = 2 2 2 2 2 2 =
-1 1 = = = 1 1 1 1 1 1 =
-0 181
-= = = = = = = = = = = =
-= = = = = = = = = = = =
-0 182
-= = = = = = = = = = = =
-= = = = = = = = = = = =
-0 183
-= = 2 2 = = = = = = = =
-= = 1 1 = = = = = = = =
-0 184
-= = 2 2 = = = = = = = =
-= = 1 1 = = = = = = = =
-0 185
-2 2 = = = 2 2 2 2 2 2 =
-1 1 = = = 1 1 1 1 1 1 =
-0 186
-2 2 = = = 2 2 2 2 2 2 =
-1 1 = = = 1 1 1 1 1 1 =
-0 187
-= = 2 = 1 = = = = = = 2
-= = 1 = 2 = = = = = = 1
-0 188
-= = = = = = = = = = = =
-= = = = = = = = = = = =
-0 189
-2 2 = = = 2 2 2 2 2 2 =
-1 1 = = = 1 1 1 1 1 1 =
-0 190
-= = = = = = = = = = = =
-= = = = = = = = = = = =
-0 191
-2 2 = = = 2 2 2 2 2 2 =
-1 1 = = = 1 1 1 1 1 1 =
-0 192
-= = = = = 2 2 = = = = =
-= = = = = 1 1 = = = = =
-0 193
-2 2 1 1 = 2 2 2 2 2 2 =
-1 1 2 2 = 1 1 1 1 1 1 =
-0 194
-= = = = = = = = = = = =
-= = = = = = = = = = = =
-0 195
-= = = = = = = = = = = =
-= = = = = = = = = = = =
-0 196
-= = = = = 2 2 2 2 2 = 2
-= = = = = 1 1 1 1 1 = 1
-0 197
-2 2 = = = 2 2 2 = 2 2 =
-1 1 = = = 1 1 1 = 1 1 =
-0 198
-= = = = 2 1 1 1 1 1 = 1
-= = = = 1 2 2 2 2 2 = 2
-0 199
-= = = = = = = = = = = =
-= = = = = = = = = = = =
-0 200
-= = = = = = = = = = = =
-= = = = = = = = = = = =
-END BESTPAIRS2
-
-
-Phase probabilities at each site
-with phase known positions indicated by =
-and missing data positions indicated by ?
-
-BEGIN PHASEPROBS
-= = = = = = = = = = = =
-1.00 1.00 = = = 1.00 1.00 1.00 = = = =
-0.87 0.87 = = = 1.00 1.00 1.00 1.00 1.00 = 1.00
-= = = = = = = = = = = =
-1.00 1.00 1.00 = = = = = = = = 1.00
-= = = = = 1.00 1.00 1.00 = = = =
-1.00 1.00 = = = = = = = = = =
-= = = = = = = = = = = =
-0.98 0.98 = = = 1.00 1.00 1.00 1.00 1.00 1.00 =
-0.93 0.93 = = = 1.00 1.00 1.00 1.00 1.00 = =
-= = = = = = = = = = 1.00 1.00
-= = = = = 1.00 1.00 1.00 1.00 1.00 1.00 =
-= = = = = = = = = = = =
-= = = = = 1.00 1.00 1.00 1.00 1.00 1.00 =
-0.98 0.98 = = = 1.00 1.00 1.00 1.00 1.00 1.00 =
-= = = = = = = = = = = =
-= = = = = 1.00 1.00 1.00 1.00 1.00 1.00 =
-1.00 1.00 = = = 1.00 1.00 1.00 = 1.00 1.00 =
-0.98 0.98 = = = 1.00 1.00 1.00 1.00 1.00 1.00 =
-1.00 1.00 = = = 1.00 1.00 1.00 = = = =
-0.93 0.93 = = = 1.00 1.00 1.00 1.00 1.00 = =
-1.00 1.00 = = = 1.00 1.00 1.00 = = = =
-= = = = = 1.00 1.00 1.00 1.00 1.00 1.00 =
-0.98 0.98 = = = 1.00 1.00 1.00 1.00 1.00 1.00 =
-1.00 1.00 = = = = = = = = = =
-0.98 0.98 = = = 1.00 1.00 1.00 1.00 1.00 1.00 =
-1.00 1.00 1.00 1.00 = 1.00 1.00 1.00 1.00 1.00 = =
-1.00 1.00 = = = = = = = = = =
-= = = = = = = = = = = =
-= = = = = 1.00 1.00 = = = = =
-= = = = = 1.00 1.00 1.00 = = = =
-= = = = = = = = = = = =
-1.00 1.00 = = = = = = = = = =
-= = = = = 1.00 1.00 1.00 = 1.00 1.00 =
-= = = = = 1.00 1.00 = = = = =
-0.98 0.98 = = = 1.00 1.00 1.00 1.00 1.00 1.00 =
-0.86 0.86 = = = 1.00 1.00 1.00 1.00 1.00 = 1.00
-0.86 0.86 = = = 1.00 1.00 1.00 1.00 1.00 = 1.00
-= = = = = 1.00 1.00 = = = = =
-= = = = = = = = = = 1.00 =
-0.93 0.93 = = = 1.00 1.00 1.00 1.00 1.00 = =
-1.00 1.00 = = = = = = = = = =
-= = = = = = = = = = = =
-= = = = = 1.00 1.00 1.00 1.00 1.00 = 1.00
-= = = = = = = = = = = =
-= = = = = 1.00 1.00 1.00 1.00 1.00 1.00 =
-= = = = = = = = = = = =
-1.00 1.00 = = = 1.00 1.00 1.00 = 1.00 1.00 =
-1.00 1.00 = = = 1.00 1.00 1.00 = = = =
-0.98 0.98 = = = 1.00 1.00 1.00 1.00 1.00 1.00 =
-= = = = = = = = = = = 1.00
-0.98 0.98 = = = 1.00 1.00 1.00 1.00 1.00 1.00 =
-0.98 0.98 = = = 1.00 1.00 1.00 1.00 1.00 1.00 =
-0.98 0.98 = = = 1.00 1.00 1.00 1.00 1.00 1.00 =
-= = = = = = = = = = = =
-0.86 0.86 = = = 1.00 1.00 1.00 1.00 1.00 = 1.00
-= = 1.00 1.00 = = = = = = = =
-0.90 0.90 = = = = = = = = 1.00 1.00
-0.98 0.98 = = = 1.00 1.00 1.00 1.00 1.00 1.00 =
-= = = = = 1.00 1.00 1.00 1.00 1.00 1.00 =
-= = = = = 1.00 1.00 1.00 1.00 1.00 = 1.00
-1.00 1.00 = = = = = = = = = =
-0.86 0.86 = = = 1.00 1.00 1.00 1.00 1.00 = 1.00
-0.98 0.98 = = = 1.00 1.00 1.00 1.00 1.00 1.00 =
-1.00 1.00 = = = = = = 1.00 = 1.00 1.00
-= = = = = = = = 1.00 = 1.00 =
-0.93 0.93 = = = 1.00 1.00 1.00 1.00 1.00 = =
-1.00 1.00 = = = = = = = = = =
-= = = = = = = = = 1.00 1.00 =
-= = = = = = = = = = = =
-1.00 1.00 = = = = = = = = = =
-= = = = = = = = = = = =
-= = = = = 1.00 1.00 1.00 = = = =
-0.86 0.86 = = = 1.00 1.00 1.00 1.00 1.00 = 1.00
-1.00 1.00 = = = 1.00 1.00 1.00 = 1.00 1.00 =
-0.98 0.98 = = = 1.00 1.00 1.00 1.00 1.00 1.00 =
-= = = = = = = = = = = =
-0.98 0.98 = = = 1.00 1.00 1.00 1.00 1.00 1.00 =
-0.98 0.98 = = = 1.00 1.00 1.00 1.00 1.00 1.00 =
-= = 1.00 = = = = = = = = 1.00
-= = = = = = = = = = = =
-= = = = = = = = = = = =
-0.98 0.98 = = = 1.00 1.00 1.00 1.00 1.00 1.00 =
-= = 1.00 = = = = = = = = 1.00
-= = = = = = = = = = = =
-= = = = = = = = 1.00 1.00 1.00 =
-0.87 0.87 = = = 1.00 1.00 1.00 1.00 1.00 = 1.00
-= = = = = = = = = = = =
-0.89 0.89 = = = = = = = = 1.00 1.00
-= = = = = 1.00 1.00 1.00 1.00 1.00 = =
-0.98 0.98 = = = 1.00 1.00 1.00 1.00 1.00 1.00 =
-= = = = = = = = = = = =
-1.00 1.00 = = = 1.00 1.00 1.00 = 1.00 1.00 =
-= = = = = = = = 1.00 1.00 = 1.00
-= = = = = = = = = = = =
-= = = = = = = = = = = =
-= = = = = 1.00 1.00 1.00 1.00 1.00 = =
-1.00 1.00 = = = 1.00 1.00 1.00 = = = =
-0.93 0.93 = = = 1.00 1.00 1.00 1.00 1.00 = =
-1.00 1.00 = = 0.92 1.00 1.00 1.00 1.00 1.00 1.00 =
-= = = = = = = = = = = =
-1.00 1.00 = = = 1.00 1.00 1.00 = 1.00 1.00 =
-1.00 1.00 = = = 1.00 1.00 1.00 = 1.00 1.00 =
-= = = = = 1.00 1.00 1.00 1.00 1.00 = =
-= = 1.00 1.00 = = = = = = = =
-0.98 0.98 = = = 1.00 1.00 1.00 1.00 1.00 1.00 =
-= = = = = = = = = = = =
-= = = = = = = = = = = =
-= = = = = 1.00 1.00 1.00 1.00 1.00 = 1.00
-= = = = = = = = = = = =
-= = = = = = = = = = = =
-= = = = = = = = = = = =
-= = = = = 1.00 1.00 1.00 1.00 1.00 = 1.00
-0.98 0.98 = = = 1.00 1.00 1.00 1.00 1.00 1.00 =
-0.98 0.98 = = = 1.00 1.00 1.00 1.00 1.00 1.00 =
-= = = = = = = = = = = =
-= = 1.00 1.00 = 1.00 1.00 = = = = =
-= = = = = = = = = = = =
-0.98 0.98 = = = 1.00 1.00 1.00 1.00 1.00 1.00 =
-= = = = = 1.00 1.00 1.00 1.00 1.00 1.00 =
-= = = = = 1.00 1.00 1.00 1.00 1.00 = 1.00
-= = = = = = = = = = = =
-1.00 1.00 1.00 = = = = = = = = 1.00
-= = 1.00 = = 1.00 1.00 1.00 1.00 1.00 1.00 1.00
-1.00 1.00 = = 0.93 1.00 1.00 1.00 1.00 1.00 1.00 =
-= = = = = = = = = = = =
-= = = = = 1.00 1.00 = = = = =
-= = = = = = = = = = = =
-= = = = = = = = = = = =
-= = 1.00 1.00 = = = = = = = =
-= = = = = = = = = = = =
-= = 1.00 = = = = = = = = 1.00
-= = = = = 1.00 1.00 1.00 1.00 1.00 = 1.00
-= = = = = 1.00 1.00 1.00 1.00 1.00 = 1.00
-= = 1.00 1.00 = = = = = = = =
-= = = = = 1.00 1.00 = = = = =
-= = 1.00 1.00 = = = = = = = =
-0.86 0.86 = = = 1.00 1.00 1.00 1.00 1.00 = 1.00
-= = = = = = = = = = = =
-= = = = = = = = = = = =
-= = = = = = = = = = = =
-= = = = = = = = = = = =
-1.00 1.00 = = = = = 1.00 1.00 1.00 = 1.00
-= = 1.00 1.00 = 1.00 1.00 1.00 1.00 1.00 = 1.00
-= = = = = = = = = = = =
-= = = = = = = = = = = =
-= = = = = = = = = = = =
-= = 1.00 1.00 = = = = = = = =
-= = = = = = = = = = = =
-0.86 0.86 = = = 1.00 1.00 1.00 1.00 1.00 = 1.00
-1.00 1.00 = = = = = = 1.00 1.00 = =
-= = = = = 1.00 1.00 1.00 1.00 1.00 = 1.00
-= = = = = = = = = = = =
-= = 0.97 = = 1.00 1.00 1.00 1.00 1.00 = 0.93
-0.98 0.98 = = = 1.00 1.00 1.00 1.00 1.00 1.00 =
-= = 1.00 1.00 = = = = = = = =
-= = = = = 1.00 1.00 1.00 1.00 1.00 = 1.00
-= = 1.00 1.00 = = = = = = = =
-= = = = = = = = = = = =
-= = = = = 1.00 1.00 = = = = =
-= = = = = = = = = = = =
-1.00 1.00 = = = 1.00 1.00 1.00 = 1.00 1.00 =
-0.98 0.98 = = = 1.00 1.00 1.00 1.00 1.00 1.00 =
-0.98 0.98 = = = 1.00 1.00 1.00 1.00 1.00 1.00 =
-= = = = = = = = = = = =
-= = = = = = = = = = = =
-= = = = = = = = = = = =
-1.00 1.00 0.98 = = 1.00 1.00 1.00 1.00 1.00 = 0.95
-= = = = = 1.00 1.00 1.00 = = = =
-= = = = = = = = = = = =
-= = 1.00 1.00 = = = = = = = =
-= = = = = = = = = = = =
-0.93 0.93 = = = 1.00 1.00 1.00 1.00 1.00 = =
-= = = = = = = = = = = =
-= = = = = 1.00 1.00 1.00 1.00 1.00 = =
-0.98 0.98 = = = 1.00 1.00 1.00 1.00 1.00 1.00 =
-= = = = = = = = = = = =
-= = = = = = = = = = = =
-1.00 1.00 = = = = = = = = = =
-0.98 0.98 = = = 1.00 1.00 1.00 1.00 1.00 1.00 =
-= = = = = = = = = = = =
-= = = = = = = = = = = =
-= = 1.00 1.00 = = = = = = = =
-= = 1.00 1.00 = = = = = = = =
-0.98 0.98 = = = 1.00 1.00 1.00 1.00 1.00 1.00 =
-0.98 0.98 = = = 1.00 1.00 1.00 1.00 1.00 1.00 =
-= = 1.00 = 0.96 = = = = = = 1.00
-= = = = = = = = = = = =
-0.98 0.98 = = = 1.00 1.00 1.00 1.00 1.00 1.00 =
-= = = = = = = = = = = =
-0.98 0.98 = = = 1.00 1.00 1.00 1.00 1.00 1.00 =
-= = = = = 1.00 1.00 = = = = =
-1.00 1.00 1.00 1.00 = 1.00 1.00 1.00 1.00 1.00 1.00 =
-= = = = = = = = = = = =
-= = = = = = = = = = = =
-= = = = = 1.00 1.00 1.00 1.00 1.00 = 1.00
-1.00 1.00 = = = 1.00 1.00 1.00 = 1.00 1.00 =
-= = = = 0.97 1.00 1.00 1.00 1.00 1.00 = 1.00
-= = = = = = = = = = = =
-= = = = = = = = = = = =
-END PHASEPROBS
diff --git a/Documentation/example_files/case_control/caco.phase.out_freqs b/Documentation/example_files/case_control/caco.phase.out_freqs
deleted file mode 100644
index d0146ccbf93caf4e995beba3a362b8fb33979267..0000000000000000000000000000000000000000
--- a/Documentation/example_files/case_control/caco.phase.out_freqs
+++ /dev/null
@@ -1,19 +0,0 @@
- index haplotype E(freq) S.E E[Freq(0)] S.E.(0) E[Freq(1)] S.E.(1)
- 1 222222222222 0.542165 0.004527 0.617302 0.004701 0.467019 0.006591
- 2 222221122222 0.022500 0.000007 0.030000 0.000018 0.015000 0.000007
- 3 222221111122 0.016294 0.001942 0.020191 0.001623 0.012404 0.003439
- 4 222221111121 0.042251 0.003079 0.056497 0.002846 0.028011 0.004991
- 5 222221111112 0.014618 0.002524 0.011469 0.002574 0.017754 0.003888
- 6 222212222222 0.009562 0.001257 0.014368 0.001795 0.004765 0.001057
- 7 222211111121 0.000085 0.000452 0.000173 0.000913 0.000000 0.000000
- 8 221222222222 0.000167 0.000716 0.000337 0.001435 0.000000 0.000000
- 9 221222222221 0.022244 0.000835 0.029491 0.001668 0.015000 0.000002
- 10 221212222221 0.000088 0.000461 0.000170 0.000906 0.000000 0.000000
- 11 221122222222 0.037500 0.000003 0.065000 0.000010 0.010000 0.000000
- 12 112222222222 0.060748 0.004248 0.023332 0.004260 0.098168 0.006433
- 13 112221112222 0.032500 0.000005 0.010000 0.000012 0.055000 0.000009
- 14 112221112112 0.035000 0.000003 0.020000 0.000005 0.050000 0.000008
- 15 112221111122 0.026063 0.002040 0.009469 0.001690 0.042643 0.003497
- 16 112221111121 0.032806 0.002977 0.018667 0.002760 0.046943 0.004962
- 17 112221111112 0.105117 0.002765 0.073241 0.002699 0.137011 0.004125
- 18 112211111112 0.000265 0.001044 0.000290 0.001168 0.000234 0.001057
diff --git a/Documentation/example_files/case_control/caco.phase.out_monitor b/Documentation/example_files/case_control/caco.phase.out_monitor
deleted file mode 100644
index 7ce4aa8178382c3b985355b1b279b0965f09118f..0000000000000000000000000000000000000000
--- a/Documentation/example_files/case_control/caco.phase.out_monitor
+++ /dev/null
@@ -1,100 +0,0 @@
-1773.09
-1773.83
-1773.96
-1774.18
-1773.27
-1774.8
-1773.45
-1773.76
-1773.74
-1772.95
-1773.92
-1774.12
-1773.71
-1773.33
-1774.5
-1773.42
-1774.2
-1773.64
-1774.11
-1774.47
-1773.78
-1773.46
-1774.2
-1772.6
-1773.18
-1773.85
-1772.59
-1774.36
-1774.13
-1774.02
-1773.42
-1773.14
-1773.49
-1774.27
-1774.54
-1773.5
-1773.7
-1773.39
-1772.84
-1772.11
-1773.67
-1773.31
-1773.57
-1773.05
-1773.9
-1771.77
-1773.06
-1773.94
-1774.08
-1774.64
-1773.86
-1773.16
-1773.55
-1774.16
-1774.68
-1772.98
-1773.39
-1773.93
-1774.18
-1774.29
-1773.6
-1773.77
-1773.29
-1773.79
-1772.81
-1774.06
-1773.03
-1773.56
-1772.57
-1773.4
-1773.74
-1774.08
-1774.69
-1773.74
-1774.25
-1773.53
-1770.4
-1774.34
-1774.57
-1775.25
-1774.71
-1773.91
-1773.07
-1773.14
-1773.82
-1773.71
-1773.91
-1773.96
-1773.15
-1773.71
-1773.94
-1774.91
-1774.78
-1773.86
-1774.18
-1773.11
-1773.63
-1773.83
-1773.63
-1773.48
diff --git a/Documentation/example_files/case_control/caco.phase.out_pairs b/Documentation/example_files/case_control/caco.phase.out_pairs
deleted file mode 100644
index 3006efaadb0b922ebae45f47e72e8cc1ca0b567f..0000000000000000000000000000000000000000
--- a/Documentation/example_files/case_control/caco.phase.out_pairs
+++ /dev/null
@@ -1,455 +0,0 @@
-IND: 1
-222222222222 , 222222222222 , 1.000
-IND: 2
-222222222222 , 112221112222 , 1.000
-IND: 3
-222222222222 , 112221111121 , 0.867
-222221111121 , 112222222222 , 0.133
-IND: 4
-222222222222 , 222222222222 , 1.000
-IND: 5
-221222222221 , 112222222222 , 1.000
-IND: 6
-112222222222 , 112221112222 , 1.000
-IND: 7
-222222222222 , 112222222222 , 1.000
-IND: 8
-222222222222 , 222222222222 , 1.000
-IND: 9
-222222222222 , 112221111112 , 0.984
-222221111112 , 112222222222 , 0.016
-IND: 10
-222222222222 , 112221111122 , 0.928
-222221111122 , 112222222222 , 0.072
-IND: 11
-112221111121 , 112221111112 , 1.000
-IND: 12
-222222222222 , 222221111112 , 0.999
-IND: 13
-222222222222 , 222222222222 , 1.000
-IND: 14
-222222222222 , 222221111112 , 0.999
-IND: 15
-222222222222 , 112221111112 , 0.984
-222221111112 , 112222222222 , 0.016
-IND: 16
-112221112112 , 112221112112 , 1.000
-IND: 17
-222222222222 , 222221111112 , 0.999
-IND: 18
-222222222222 , 112221112112 , 1.000
-IND: 19
-222222222222 , 112221111112 , 0.984
-222221111112 , 112222222222 , 0.016
-IND: 20
-222222222222 , 112221112222 , 1.000
-IND: 21
-222222222222 , 112221111122 , 0.929
-222221111122 , 112222222222 , 0.071
-IND: 22
-222222222222 , 112221112222 , 1.000
-IND: 23
-112222222222 , 112221111112 , 1.000
-IND: 24
-222222222222 , 112221111112 , 0.984
-222221111112 , 112222222222 , 0.016
-IND: 25
-222222222222 , 112222222222 , 1.000
-IND: 26
-222222222222 , 112221111112 , 0.984
-222221111112 , 112222222222 , 0.016
-IND: 27
-221122222222 , 112221111122 , 1.000
-IND: 28
-222222222222 , 112222222222 , 1.000
-IND: 29
-222222222222 , 222222222222 , 1.000
-IND: 30
-222222222222 , 222221122222 , 1.000
-IND: 31
-112222222222 , 112221112222 , 1.000
-IND: 32
-222222222222 , 222222222222 , 1.000
-IND: 33
-222222222222 , 112222222222 , 1.000
-IND: 34
-112222222222 , 112221112112 , 1.000
-IND: 35
-222222222222 , 222221122222 , 1.000
-IND: 36
-222222222222 , 112221111112 , 0.984
-222221111112 , 112222222222 , 0.016
-IND: 37
-222222222222 , 112221111121 , 0.864
-222221111121 , 112222222222 , 0.136
-IND: 38
-222222222222 , 112221111121 , 0.863
-222221111121 , 112222222222 , 0.137
-IND: 39
-222222222222 , 222221122222 , 1.000
-IND: 40
-112221111122 , 112221111112 , 1.000
-IND: 41
-222222222222 , 112221111122 , 0.929
-222221111122 , 112222222222 , 0.071
-IND: 42
-222222222222 , 112222222222 , 1.000
-IND: 43
-222222222222 , 222222222222 , 1.000
-IND: 44
-222222222222 , 222221111121 , 1.000
-IND: 45
-222222222222 , 222222222222 , 1.000
-IND: 46
-112222222222 , 112221111112 , 1.000
-IND: 47
-112221111112 , 112221111112 , 1.000
-IND: 48
-222222222222 , 112221112112 , 1.000
-IND: 49
-222222222222 , 112221112222 , 1.000
-IND: 50
-222222222222 , 112221111112 , 0.984
-222221111112 , 112222222222 , 0.016
-IND: 51
-222221111122 , 222221111121 , 1.000
-IND: 52
-222222222222 , 112221111112 , 0.984
-222221111112 , 112222222222 , 0.016
-IND: 53
-222222222222 , 112221111112 , 0.984
-222221111112 , 112222222222 , 0.016
-IND: 54
-222222222222 , 112221111112 , 0.984
-222221111112 , 112222222222 , 0.016
-IND: 55
-222222222222 , 222222222222 , 1.000
-IND: 56
-222222222222 , 112221111121 , 0.863
-222221111121 , 112222222222 , 0.136
-IND: 57
-222222222222 , 221122222222 , 1.000
-IND: 58
-222221111121 , 112221111112 , 0.898
-222221111112 , 112221111121 , 0.102
-IND: 59
-222222222222 , 112221111112 , 0.984
-222221111112 , 112222222222 , 0.016
-IND: 60
-112222222222 , 112221111112 , 1.000
-IND: 61
-112222222222 , 112221111121 , 1.000
-IND: 62
-222222222222 , 112222222222 , 1.000
-IND: 63
-222222222222 , 112221111121 , 0.863
-222221111121 , 112222222222 , 0.136
-IND: 64
-222222222222 , 112221111112 , 0.984
-222221111112 , 112222222222 , 0.016
-IND: 65
-222221111121 , 112221112112 , 1.000
-IND: 66
-112221112112 , 112221111122 , 1.000
-IND: 67
-222222222222 , 112221111122 , 0.928
-222221111122 , 112222222222 , 0.072
-IND: 68
-222222222222 , 112222222222 , 1.000
-IND: 69
-112221112222 , 112221112112 , 1.000
-IND: 70
-222222222222 , 222222222222 , 1.000
-IND: 71
-222222222222 , 112222222222 , 1.000
-IND: 72
-222222222222 , 222222222222 , 1.000
-IND: 73
-112222222222 , 112221112222 , 1.000
-IND: 74
-222222222222 , 112221111121 , 0.862
-222221111121 , 112222222222 , 0.138
-IND: 75
-222222222222 , 112221112112 , 1.000
-IND: 76
-222222222222 , 112221111112 , 0.984
-222221111112 , 112222222222 , 0.016
-IND: 77
-222222222222 , 222222222222 , 1.000
-IND: 78
-222222222222 , 112221111112 , 0.984
-222221111112 , 112222222222 , 0.016
-IND: 79
-222222222222 , 112221111112 , 0.984
-222221111112 , 112222222222 , 0.016
-IND: 80
-222222222222 , 221222222221 , 1.000
-IND: 81
-222222222222 , 222222222222 , 1.000
-IND: 82
-222222222222 , 222222222222 , 1.000
-IND: 83
-222222222222 , 112221111112 , 0.984
-222221111112 , 112222222222 , 0.016
-IND: 84
-222222222222 , 221222222221 , 1.000
-IND: 85
-222222222222 , 222222222222 , 1.000
-IND: 86
-112221112222 , 112221111112 , 1.000
-IND: 87
-222222222222 , 112221111121 , 0.865
-222221111121 , 112222222222 , 0.134
-IND: 88
-222222222222 , 222222222222 , 1.000
-IND: 89
-222221111121 , 112221111112 , 0.894
-222221111112 , 112221111121 , 0.106
-IND: 90
-112222222222 , 112221111122 , 1.000
-IND: 91
-222222222222 , 112221111112 , 0.984
-222221111112 , 112222222222 , 0.016
-IND: 92
-222222222222 , 222222222222 , 1.000
-IND: 93
-222222222222 , 112221112112 , 1.000
-IND: 94
-112221112222 , 112221111121 , 1.000
-IND: 95
-222222222222 , 222222222222 , 1.000
-IND: 96
-222222222222 , 222222222222 , 1.000
-IND: 97
-222222222222 , 222221111122 , 1.000
-IND: 98
-222222222222 , 112221112222 , 1.000
-IND: 99
-222222222222 , 112221111122 , 0.929
-222221111122 , 112222222222 , 0.071
-IND: 100
-222222222222 , 112211111112 , 0.080
-222212222222 , 112221111112 , 0.920
-IND: 101
-222222222222 , 222222222222 , 1.000
-IND: 102
-222222222222 , 112221112112 , 1.000
-IND: 103
-222222222222 , 112221112112 , 1.000
-IND: 104
-222222222222 , 222221111122 , 1.000
-IND: 105
-222222222222 , 221122222222 , 1.000
-IND: 106
-222222222222 , 112221111112 , 0.983
-222221111112 , 112222222222 , 0.016
-IND: 107
-222222222222 , 222222222222 , 1.000
-IND: 108
-222222222222 , 222222222222 , 1.000
-IND: 109
-222222222222 , 222221111121 , 1.000
-IND: 110
-222222222222 , 222222222222 , 1.000
-IND: 111
-222222222222 , 222222222222 , 1.000
-IND: 112
-222222222222 , 222222222222 , 1.000
-IND: 113
-222222222222 , 222221111121 , 1.000
-IND: 114
-222222222222 , 112221111112 , 0.984
-222221111112 , 112222222222 , 0.016
-IND: 115
-222222222222 , 112221111112 , 0.984
-222221111112 , 112222222222 , 0.016
-IND: 116
-222222222222 , 222222222222 , 1.000
-IND: 117
-222221122222 , 221122222222 , 1.000
-IND: 118
-222222222222 , 222222222222 , 1.000
-IND: 119
-222222222222 , 112221111112 , 0.984
-222221111112 , 112222222222 , 0.016
-IND: 120
-222222222222 , 222221111112 , 0.999
-IND: 121
-222222222222 , 222221111121 , 1.000
-IND: 122
-222222222222 , 222222222222 , 1.000
-IND: 123
-221222222221 , 112222222222 , 1.000
-IND: 124
-222221111112 , 221222222221 , 1.000
-IND: 125
-222222222222 , 112211111112 , 0.072
-222212222222 , 112221111112 , 0.927
-IND: 126
-222222222222 , 222222222222 , 1.000
-IND: 127
-222222222222 , 222221122222 , 1.000
-IND: 128
-222222222222 , 222222222222 , 1.000
-IND: 129
-222222222222 , 222222222222 , 1.000
-IND: 130
-222222222222 , 221122222222 , 1.000
-IND: 131
-222222222222 , 222222222222 , 1.000
-IND: 132
-222222222222 , 221222222221 , 1.000
-IND: 133
-222222222222 , 222221111121 , 1.000
-IND: 134
-112222222222 , 112221111121 , 1.000
-IND: 135
-222222222222 , 221122222222 , 1.000
-IND: 136
-222222222222 , 222221122222 , 1.000
-IND: 137
-222222222222 , 221122222222 , 1.000
-IND: 138
-222222222222 , 112221111121 , 0.865
-222221111121 , 112222222222 , 0.135
-IND: 139
-222222222222 , 222222222222 , 1.000
-IND: 140
-222222222222 , 222222222222 , 1.000
-IND: 141
-222222222222 , 222222222222 , 1.000
-IND: 142
-222222222222 , 222222222222 , 1.000
-IND: 143
-222221122222 , 112221111121 , 0.999
-IND: 144
-222221111121 , 221122222222 , 1.000
-IND: 145
-222222222222 , 222222222222 , 1.000
-IND: 146
-222222222222 , 222222222222 , 1.000
-IND: 147
-222222222222 , 222222222222 , 1.000
-IND: 148
-222222222222 , 221122222222 , 1.000
-IND: 149
-222222222222 , 222222222222 , 1.000
-IND: 150
-222222222222 , 112221111121 , 0.863
-222221111121 , 112222222222 , 0.136
-IND: 151
-222221111122 , 112221112222 , 0.999
-IND: 152
-222222222222 , 222221111121 , 1.000
-IND: 153
-222222222222 , 222222222222 , 1.000
-IND: 154
-222222222222 , 221221111121 , 0.033
-222221111122 , 221222222221 , 0.926
-222221111121 , 221222222222 , 0.042
-IND: 155
-222222222222 , 112221111112 , 0.984
-222221111112 , 112222222222 , 0.016
-IND: 156
-222222222222 , 221122222222 , 1.000
-IND: 157
-222222222222 , 222221111121 , 1.000
-IND: 158
-222222222222 , 221122222222 , 1.000
-IND: 159
-222222222222 , 222222222222 , 1.000
-IND: 160
-222222222222 , 222221122222 , 1.000
-IND: 161
-222222222222 , 222222222222 , 1.000
-IND: 162
-222222222222 , 112221112112 , 1.000
-IND: 163
-222222222222 , 112221111112 , 0.984
-222221111112 , 112222222222 , 0.016
-IND: 164
-222222222222 , 112221111112 , 0.984
-222221111112 , 112222222222 , 0.016
-IND: 165
-222222222222 , 222222222222 , 1.000
-IND: 166
-222222222222 , 222222222222 , 1.000
-IND: 167
-222222222222 , 222222222222 , 1.000
-IND: 168
-222222222222 , 111221111121 , 0.015
-221222222222 , 112221111121 , 0.027
-221222222221 , 112221111122 , 0.954
-IND: 169
-112222222222 , 112221112222 , 1.000
-IND: 170
-222221111121 , 222221111121 , 1.000
-IND: 171
-222222222222 , 221122222222 , 1.000
-IND: 172
-222222222222 , 222222222222 , 1.000
-IND: 173
-222222222222 , 112221111122 , 0.929
-222221111122 , 112222222222 , 0.071
-IND: 174
-222222222222 , 222222222222 , 1.000
-IND: 175
-222222222222 , 222221111122 , 1.000
-IND: 176
-222222222222 , 112221111112 , 0.984
-222221111112 , 112222222222 , 0.015
-IND: 177
-222222222222 , 222222222222 , 1.000
-IND: 178
-222222222222 , 222222222222 , 1.000
-IND: 179
-222222222222 , 112222222222 , 1.000
-IND: 180
-222222222222 , 112221111112 , 0.984
-222221111112 , 112222222222 , 0.016
-IND: 181
-222222222222 , 222222222222 , 1.000
-IND: 182
-222222222222 , 222222222222 , 1.000
-IND: 183
-222222222222 , 221122222222 , 1.000
-IND: 184
-222222222222 , 221122222222 , 1.000
-IND: 185
-222222222222 , 112221111112 , 0.984
-222221111112 , 112222222222 , 0.015
-IND: 186
-222222222222 , 112221111112 , 0.984
-222221111112 , 112222222222 , 0.016
-IND: 187
-222222222222 , 221212222221 , 0.035
-222212222222 , 221222222221 , 0.965
-IND: 188
-222222222222 , 222222222222 , 1.000
-IND: 189
-222222222222 , 112221111112 , 0.984
-222221111112 , 112222222222 , 0.016
-IND: 190
-222222222222 , 222222222222 , 1.000
-IND: 191
-222222222222 , 112221111112 , 0.984
-222221111112 , 112222222222 , 0.016
-IND: 192
-222222222222 , 222221122222 , 1.000
-IND: 193
-221122222222 , 112221111112 , 1.000
-IND: 194
-222222222222 , 222222222222 , 1.000
-IND: 195
-222222222222 , 222222222222 , 1.000
-IND: 196
-222222222222 , 222221111121 , 1.000
-IND: 197
-222222222222 , 112221112112 , 1.000
-IND: 198
-222222222222 , 222211111121 , 0.031
-222221111121 , 222212222222 , 0.969
-IND: 199
-222222222222 , 222222222222 , 1.000
-IND: 200
-222222222222 , 222222222222 , 1.000
diff --git a/Documentation/example_files/case_control/caco.phase.out_recom b/Documentation/example_files/case_control/caco.phase.out_recom
deleted file mode 100644
index e69de29bb2d1d6434b8b29ae775ad8c2e48c5391..0000000000000000000000000000000000000000
diff --git a/Documentation/example_files/case_control/caco.phy b/Documentation/example_files/case_control/caco.phy
deleted file mode 100644
index b66e67b6890fc55f3087d2c71edac91750661070..0000000000000000000000000000000000000000
--- a/Documentation/example_files/case_control/caco.phy
+++ /dev/null
@@ -1,16 +0,0 @@
- 15 13
-H004 1122211111222
-H006 2222122222222
-H005 1122211121122
-H008 2222211111212
-H011 1122211122222
-H002 2222211222222
-H010 2211222222222
-H009 2212222222212
-H001 2222222222222
-H003 1122222222222
-H014 2222211111122
-H013 1122211111212
-H007 1122211111122
-H012 2222211111222
-H000_anc [ancestral sequence]1
diff --git a/Documentation/example_files/case_control/caco.prepaup b/Documentation/example_files/case_control/caco.prepaup
deleted file mode 100644
index 24960588c65ee26a477af1db87658717bf27adf8..0000000000000000000000000000000000000000
--- a/Documentation/example_files/case_control/caco.prepaup
+++ /dev/null
@@ -1,38 +0,0 @@
-#Nexus
-Begin data;
-dimension ntax=15 nchar=13;
-format symbols="0123456789" missing=?;
-matrix
-H004_c002_m009 1122211111222
-H006_c003_m001 2222122222222
-H005_c004_m010 1122211121122
-H008_c011_m005 2222211111212
-H011_c002_m011 1122211122222
-H002_c006_m003 2222211222222
-H010_c013_m002 2211222222222
-H009_c006_m003 2212222222212
-H001_c124_m095 2222222222222
-H003_c004_m018 1122222222222
-H014_c002_m003 2222211111122
-H013_c004_m010 1122211111212
-H007_c015_m028 1122211111122
-H012_c004_m002 2222211111222
-H000_ancetre [add ancestral haplotype]1
-;
-end;
-begin assumptions;
-ancstates *anc vector = [add ancestral haplotype]1;
-end;
-begin paup;
-set nowarnreset autoclose maxtrees = [2000] increase=[no - Auto AutoInc = 100] monitor = no taxlabels = full
-root=lundberg warnroot=no opt=[deltran - acctran] ancstates=anc;
-hsearch;
-savetrees [from=1 to=1] file=[test.tree] root=yes format=altnexus;
-cleartrees nowarn=yes;
-gettrees rooted=yes file=[test.tree];
-log file = [test.res.log] replace=[yes - no];
-describetrees [all] /plot=[cladogram - phylogram] brlens=yes rootmethod=lundberg apolist=yes;
-log stop;
-end;
-quit;
-[WARNING, this file is designed for bi-allelic data. If it is not the case, you may have to modify this input file, for example by specifying the ordered option in the typeset command in the assumption block]
diff --git a/Documentation/example_files/case_control/general/caco.paup b/Documentation/example_files/case_control/general/caco.paup
deleted file mode 100644
index 23125500521652fd5eb21c3576944d44ff9123db..0000000000000000000000000000000000000000
--- a/Documentation/example_files/case_control/general/caco.paup
+++ /dev/null
@@ -1,38 +0,0 @@
-#Nexus
-Begin data;
-dimension ntax=14 nchar=13;
-format symbols="0123456789" missing=?;
-matrix
-H004_c002_m009 1122211111222
-H006_c003_m001 2222122222222
-H005_c004_m010 1122211121122
-H008_c011_m005 2222211111212
-H011_c002_m011 1122211122222
-H002_c006_m003 2222211222222
-H010_c013_m002 2211222222222
-H009_c006_m003 2212222222212
-[H001_c124_m095 2222222222222]
-H003_c004_m018 1122222222222
-H014_c002_m003 2222211111122
-H013_c004_m010 1122211111212
-H007_c015_m028 1122211111122
-H012_c004_m002 2222211111222
-H000_ancetre 2222222222221
-;
-end;
-begin assumptions;
-ancstates *anc vector = 2222222222221;
-end;
-begin paup;
-set nowarnreset autoclose maxtrees = 1000 increase=no[ - Auto AutoInc = 100] monitor = no taxlabels = full
-root=lundberg warnroot=no opt=deltran [- acctran] ancstates=anc;
-hsearch;
-savetrees from=1 to=1000 file=test.tree root=yes format=altnexus;
-cleartrees nowarn=yes;
-gettrees rooted=yes file=test.tree;
-log file = test.res.log replace=yes [- no];
-describetrees all /plot=cladogram [- phylogram] brlens=yes rootmethod=lundberg apolist=yes;
-log stop;
-end;
-quit;
-[WARNING, this file is designed for bi-allelic data. If it is not the case, you may have to modify this input file, for example by specifying the ordered option in the typeset command in the assumption block]
diff --git a/Documentation/example_files/case_control/general/caco.phase b/Documentation/example_files/case_control/general/caco.phase
deleted file mode 100644
index aa8869fdc5a15d48ec57c1951cabf13fd65038ee..0000000000000000000000000000000000000000
--- a/Documentation/example_files/case_control/general/caco.phase
+++ /dev/null
@@ -1,604 +0,0 @@
-200
-12
-P 293 693 2319 2346 3697 3727 3848 4329 4384 4553 6297 6760
-SSSSSSSSSSSS
-1 1
-222222222222
-222222222222
-1 2
-112221112222
-222222222222
-1 3
-222222222222
-112221111121
-1 4
-222222222222
-222222222222
-1 5
-112222222222
-221222222221
-1 6
-112222222222
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-1 21
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-1 24
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-1 81
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-222222222222
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-222221122222
-112221111121
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-221122222222
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-222222222222
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-222222222222
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-222222222222
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-112221112222
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-221222222221
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-222222222222
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-222222222222
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-222222222222
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-222222222222
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-222222222222
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-221222222221
-112221111122
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-112222222222
-112221112222
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-222221111121
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-222222222222
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-112222222222
-222222222222
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-221122222222
-222222222222
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-222222222222
-221122222222
-0 185
-222222222222
-112221111112
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-112221111112
-222222222222
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-222212222222
-221222222221
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-222222222222
-222222222222
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-222222222222
-112221111112
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-222222222222
-222222222222
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-222222222222
-112221111112
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-222221122222
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-112221112112
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-222221111121
-222212222222
-0 199
-222222222222
-222222222222
-0 200
-222222222222
-222222222222
diff --git a/Documentation/example_files/case_control/general/caco.phase.out b/Documentation/example_files/case_control/general/caco.phase.out
deleted file mode 100644
index 57cff6e7eeacb252e6576ea670e314353bc8834e..0000000000000000000000000000000000000000
--- a/Documentation/example_files/case_control/general/caco.phase.out
+++ /dev/null
@@ -1,1673 +0,0 @@
-*************************************************************
-**** ****
-**** Output from PHASE v2.0.2 ****
-**** Code by M Stephens, with contributions from N Li ****
-**** ****
-*************************************************************
-
-BEGIN COMMAND_LINE
-/home/cbardel/phase/phase.2.0.2.linux/PHASE -c-1 -MS caco.phase caco.out 100 1 100
-END COMMAND_LINE
-
-BEGIN OUTFILE_LIST
-caco.out_freqs : haplotype frequency estimates
-caco.out_pairs : most likely haplotype pairs for each individual
-caco.out_signif : p-value for testing cases vs controls
-caco.out_monitor : file for monitoring convergence
-END OUTFILE_LIST
-
-BEGIN INPUT_SUMMARY
-Number of Individuals: 200
-Number of Loci: 12
-Positions of loci: 293 693 2319 2346 3697 3727 3848 4329 4384 4553 6297 6760
-END INPUT_SUMMARY
-
-List of haplotypes found in best reconstruction, with counts.
-(See file caco.out_freqs for haplotype population frequency estimates)
-
-BEGIN LIST_SUMMARY
- 1 222222222222 219.000000
- 2 222221122222 9.000000
- 3 222221111122 6.000000
- 4 222221111121 16.000000
- 5 222221111112 5.000000
- 6 222212222222 4.000000
- 7 221222222221 9.000000
- 8 221122222222 15.000000
- 9 112222222222 22.000000
- 10 112221112222 13.000000
- 11 112221112112 14.000000
- 12 112221111122 11.000000
- 13 112221111121 14.000000
- 14 112221111112 43.000000
-END LIST_SUMMARY
-
-
-Summary of best reconstruction
-(numbers refer to the list of haplotypes given above)
-
-BEGIN BESTPAIRS_SUMMARY
-1: (1,1)
-2: (1,10)
-3: (1,13)
-4: (1,1)
-5: (7,9)
-6: (9,10)
-7: (1,9)
-8: (1,1)
-9: (1,14)
-10: (1,12)
-11: (13,14)
-12: (1,5)
-13: (1,1)
-14: (1,5)
-15: (1,14)
-16: (11,11)
-17: (1,5)
-18: (1,11)
-19: (1,14)
-20: (1,10)
-21: (1,12)
-22: (1,10)
-23: (9,14)
-24: (1,14)
-25: (1,9)
-26: (1,14)
-27: (8,12)
-28: (1,9)
-29: (1,1)
-30: (1,2)
-31: (9,10)
-32: (1,1)
-33: (1,9)
-34: (9,11)
-35: (1,2)
-36: (1,14)
-37: (1,13)
-38: (1,13)
-39: (1,2)
-40: (12,14)
-41: (1,12)
-42: (1,9)
-43: (1,1)
-44: (1,4)
-45: (1,1)
-46: (9,14)
-47: (14,14)
-48: (1,11)
-49: (1,10)
-50: (1,14)
-51: (3,4)
-52: (1,14)
-53: (1,14)
-54: (1,14)
-55: (1,1)
-56: (1,13)
-57: (1,8)
-58: (4,14)
-59: (1,14)
-60: (9,14)
-61: (9,13)
-62: (1,9)
-63: (1,13)
-64: (1,14)
-65: (4,11)
-66: (11,12)
-67: (1,12)
-68: (1,9)
-69: (10,11)
-70: (1,1)
-71: (1,9)
-72: (1,1)
-73: (9,10)
-74: (1,13)
-75: (1,11)
-76: (1,14)
-77: (1,1)
-78: (1,14)
-79: (1,14)
-80: (1,7)
-81: (1,1)
-82: (1,1)
-83: (1,14)
-84: (1,7)
-85: (1,1)
-86: (10,14)
-87: (1,13)
-88: (1,1)
-89: (4,14)
-90: (9,12)
-91: (1,14)
-92: (1,1)
-93: (1,11)
-94: (10,13)
-95: (1,1)
-96: (1,1)
-97: (1,3)
-98: (1,10)
-99: (1,12)
-100: (6,14)
-101: (1,1)
-102: (1,11)
-103: (1,11)
-104: (1,3)
-105: (1,8)
-106: (1,14)
-107: (1,1)
-108: (1,1)
-109: (1,4)
-110: (1,1)
-111: (1,1)
-112: (1,1)
-113: (1,4)
-114: (1,14)
-115: (1,14)
-116: (1,1)
-117: (2,8)
-118: (1,1)
-119: (1,14)
-120: (1,5)
-121: (1,4)
-122: (1,1)
-123: (7,9)
-124: (5,7)
-125: (6,14)
-126: (1,1)
-127: (1,2)
-128: (1,1)
-129: (1,1)
-130: (1,8)
-131: (1,1)
-132: (1,7)
-133: (1,4)
-134: (9,13)
-135: (1,8)
-136: (1,2)
-137: (1,8)
-138: (1,13)
-139: (1,1)
-140: (1,1)
-141: (1,1)
-142: (1,1)
-143: (2,13)
-144: (4,8)
-145: (1,1)
-146: (1,1)
-147: (1,1)
-148: (1,8)
-149: (1,1)
-150: (1,13)
-151: (3,10)
-152: (1,4)
-153: (1,1)
-154: (3,7)
-155: (1,14)
-156: (1,8)
-157: (1,4)
-158: (1,8)
-159: (1,1)
-160: (1,2)
-161: (1,1)
-162: (1,11)
-163: (1,14)
-164: (1,14)
-165: (1,1)
-166: (1,1)
-167: (1,1)
-168: (7,12)
-169: (9,10)
-170: (4,4)
-171: (1,8)
-172: (1,1)
-173: (1,12)
-174: (1,1)
-175: (1,3)
-176: (1,14)
-177: (1,1)
-178: (1,1)
-179: (1,9)
-180: (1,14)
-181: (1,1)
-182: (1,1)
-183: (1,8)
-184: (1,8)
-185: (1,14)
-186: (1,14)
-187: (6,7)
-188: (1,1)
-189: (1,14)
-190: (1,1)
-191: (1,14)
-192: (1,2)
-193: (8,14)
-194: (1,1)
-195: (1,1)
-196: (1,4)
-197: (1,11)
-198: (4,6)
-199: (1,1)
-200: (1,1)
-END BESTPAIRS_SUMMARY
-
-
-Haplotype estimates for each individual, with uncertain phases enclosed in ()
-and uncertain genotypes enclosed in []:
-
-BEGIN BESTPAIRS1
-1 1
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 2 2 2 2 2 2 2
-1 2
-2 2 2 2 2 2 2 2 2 2 2 2
-1 1 2 2 2 1 1 1 2 2 2 2
-1 3
-(2) (2) 2 2 2 2 2 2 2 2 2 2
-(1) (1) 2 2 2 1 1 1 1 1 2 1
-1 4
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 2 2 2 2 2 2 2
-1 5
-2 2 1 2 2 2 2 2 2 2 2 1
-1 1 2 2 2 2 2 2 2 2 2 2
-1 6
-1 1 2 2 2 2 2 2 2 2 2 2
-1 1 2 2 2 1 1 1 2 2 2 2
-1 7
-2 2 2 2 2 2 2 2 2 2 2 2
-1 1 2 2 2 2 2 2 2 2 2 2
-1 8
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 2 2 2 2 2 2 2
-1 9
-2 2 2 2 2 2 2 2 2 2 2 2
-1 1 2 2 2 1 1 1 1 1 1 2
-1 10
-2 2 2 2 2 2 2 2 2 2 2 2
-1 1 2 2 2 1 1 1 1 1 2 2
-1 11
-1 1 2 2 2 1 1 1 1 1 2 1
-1 1 2 2 2 1 1 1 1 1 1 2
-1 12
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 1 1 1 1 1 1 2
-1 13
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 2 2 2 2 2 2 2
-1 14
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 1 1 1 1 1 1 2
-1 15
-2 2 2 2 2 2 2 2 2 2 2 2
-1 1 2 2 2 1 1 1 1 1 1 2
-1 16
-1 1 2 2 2 1 1 1 2 1 1 2
-1 1 2 2 2 1 1 1 2 1 1 2
-1 17
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 1 1 1 1 1 1 2
-1 18
-2 2 2 2 2 2 2 2 2 2 2 2
-1 1 2 2 2 1 1 1 2 1 1 2
-1 19
-2 2 2 2 2 2 2 2 2 2 2 2
-1 1 2 2 2 1 1 1 1 1 1 2
-1 20
-2 2 2 2 2 2 2 2 2 2 2 2
-1 1 2 2 2 1 1 1 2 2 2 2
-1 21
-2 2 2 2 2 2 2 2 2 2 2 2
-1 1 2 2 2 1 1 1 1 1 2 2
-1 22
-2 2 2 2 2 2 2 2 2 2 2 2
-1 1 2 2 2 1 1 1 2 2 2 2
-1 23
-1 1 2 2 2 2 2 2 2 2 2 2
-1 1 2 2 2 1 1 1 1 1 1 2
-1 24
-2 2 2 2 2 2 2 2 2 2 2 2
-1 1 2 2 2 1 1 1 1 1 1 2
-1 25
-2 2 2 2 2 2 2 2 2 2 2 2
-1 1 2 2 2 2 2 2 2 2 2 2
-1 26
-2 2 2 2 2 2 2 2 2 2 2 2
-1 1 2 2 2 1 1 1 1 1 1 2
-1 27
-2 2 1 1 2 2 2 2 2 2 2 2
-1 1 2 2 2 1 1 1 1 1 2 2
-1 28
-2 2 2 2 2 2 2 2 2 2 2 2
-1 1 2 2 2 2 2 2 2 2 2 2
-1 29
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 2 2 2 2 2 2 2
-1 30
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 1 1 2 2 2 2 2
-1 31
-1 1 2 2 2 2 2 2 2 2 2 2
-1 1 2 2 2 1 1 1 2 2 2 2
-1 32
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 2 2 2 2 2 2 2
-1 33
-2 2 2 2 2 2 2 2 2 2 2 2
-1 1 2 2 2 2 2 2 2 2 2 2
-1 34
-1 1 2 2 2 2 2 2 2 2 2 2
-1 1 2 2 2 1 1 1 2 1 1 2
-1 35
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 1 1 2 2 2 2 2
-1 36
-2 2 2 2 2 2 2 2 2 2 2 2
-1 1 2 2 2 1 1 1 1 1 1 2
-1 37
-(2) (2) 2 2 2 2 2 2 2 2 2 2
-(1) (1) 2 2 2 1 1 1 1 1 2 1
-1 38
-(2) (2) 2 2 2 2 2 2 2 2 2 2
-(1) (1) 2 2 2 1 1 1 1 1 2 1
-1 39
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 1 1 2 2 2 2 2
-1 40
-1 1 2 2 2 1 1 1 1 1 2 2
-1 1 2 2 2 1 1 1 1 1 1 2
-1 41
-2 2 2 2 2 2 2 2 2 2 2 2
-1 1 2 2 2 1 1 1 1 1 2 2
-1 42
-2 2 2 2 2 2 2 2 2 2 2 2
-1 1 2 2 2 2 2 2 2 2 2 2
-1 43
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 2 2 2 2 2 2 2
-1 44
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 1 1 1 1 1 2 1
-1 45
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 2 2 2 2 2 2 2
-1 46
-1 1 2 2 2 2 2 2 2 2 2 2
-1 1 2 2 2 1 1 1 1 1 1 2
-1 47
-1 1 2 2 2 1 1 1 1 1 1 2
-1 1 2 2 2 1 1 1 1 1 1 2
-1 48
-2 2 2 2 2 2 2 2 2 2 2 2
-1 1 2 2 2 1 1 1 2 1 1 2
-1 49
-2 2 2 2 2 2 2 2 2 2 2 2
-1 1 2 2 2 1 1 1 2 2 2 2
-1 50
-2 2 2 2 2 2 2 2 2 2 2 2
-1 1 2 2 2 1 1 1 1 1 1 2
-1 51
-2 2 2 2 2 1 1 1 1 1 2 2
-2 2 2 2 2 1 1 1 1 1 2 1
-1 52
-2 2 2 2 2 2 2 2 2 2 2 2
-1 1 2 2 2 1 1 1 1 1 1 2
-1 53
-2 2 2 2 2 2 2 2 2 2 2 2
-1 1 2 2 2 1 1 1 1 1 1 2
-1 54
-2 2 2 2 2 2 2 2 2 2 2 2
-1 1 2 2 2 1 1 1 1 1 1 2
-1 55
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 2 2 2 2 2 2 2
-1 56
-(2) (2) 2 2 2 2 2 2 2 2 2 2
-(1) (1) 2 2 2 1 1 1 1 1 2 1
-1 57
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 1 1 2 2 2 2 2 2 2 2
-1 58
-(2) (2) 2 2 2 1 1 1 1 1 2 1
-(1) (1) 2 2 2 1 1 1 1 1 1 2
-1 59
-2 2 2 2 2 2 2 2 2 2 2 2
-1 1 2 2 2 1 1 1 1 1 1 2
-1 60
-1 1 2 2 2 2 2 2 2 2 2 2
-1 1 2 2 2 1 1 1 1 1 1 2
-1 61
-1 1 2 2 2 2 2 2 2 2 2 2
-1 1 2 2 2 1 1 1 1 1 2 1
-1 62
-2 2 2 2 2 2 2 2 2 2 2 2
-1 1 2 2 2 2 2 2 2 2 2 2
-1 63
-(2) (2) 2 2 2 2 2 2 2 2 2 2
-(1) (1) 2 2 2 1 1 1 1 1 2 1
-1 64
-2 2 2 2 2 2 2 2 2 2 2 2
-1 1 2 2 2 1 1 1 1 1 1 2
-1 65
-2 2 2 2 2 1 1 1 1 1 2 1
-1 1 2 2 2 1 1 1 2 1 1 2
-1 66
-1 1 2 2 2 1 1 1 2 1 1 2
-1 1 2 2 2 1 1 1 1 1 2 2
-1 67
-2 2 2 2 2 2 2 2 2 2 2 2
-1 1 2 2 2 1 1 1 1 1 2 2
-1 68
-2 2 2 2 2 2 2 2 2 2 2 2
-1 1 2 2 2 2 2 2 2 2 2 2
-1 69
-1 1 2 2 2 1 1 1 2 2 2 2
-1 1 2 2 2 1 1 1 2 1 1 2
-1 70
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 2 2 2 2 2 2 2
-1 71
-2 2 2 2 2 2 2 2 2 2 2 2
-1 1 2 2 2 2 2 2 2 2 2 2
-1 72
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 2 2 2 2 2 2 2
-1 73
-1 1 2 2 2 2 2 2 2 2 2 2
-1 1 2 2 2 1 1 1 2 2 2 2
-1 74
-(2) (2) 2 2 2 2 2 2 2 2 2 2
-(1) (1) 2 2 2 1 1 1 1 1 2 1
-1 75
-2 2 2 2 2 2 2 2 2 2 2 2
-1 1 2 2 2 1 1 1 2 1 1 2
-1 76
-2 2 2 2 2 2 2 2 2 2 2 2
-1 1 2 2 2 1 1 1 1 1 1 2
-1 77
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 2 2 2 2 2 2 2
-1 78
-2 2 2 2 2 2 2 2 2 2 2 2
-1 1 2 2 2 1 1 1 1 1 1 2
-1 79
-2 2 2 2 2 2 2 2 2 2 2 2
-1 1 2 2 2 1 1 1 1 1 1 2
-1 80
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 1 2 2 2 2 2 2 2 2 1
-1 81
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 2 2 2 2 2 2 2
-1 82
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 2 2 2 2 2 2 2
-1 83
-2 2 2 2 2 2 2 2 2 2 2 2
-1 1 2 2 2 1 1 1 1 1 1 2
-1 84
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 1 2 2 2 2 2 2 2 2 1
-1 85
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 2 2 2 2 2 2 2
-1 86
-1 1 2 2 2 1 1 1 2 2 2 2
-1 1 2 2 2 1 1 1 1 1 1 2
-1 87
-(2) (2) 2 2 2 2 2 2 2 2 2 2
-(1) (1) 2 2 2 1 1 1 1 1 2 1
-1 88
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 2 2 2 2 2 2 2
-1 89
-(2) (2) 2 2 2 1 1 1 1 1 2 1
-(1) (1) 2 2 2 1 1 1 1 1 1 2
-1 90
-1 1 2 2 2 2 2 2 2 2 2 2
-1 1 2 2 2 1 1 1 1 1 2 2
-1 91
-2 2 2 2 2 2 2 2 2 2 2 2
-1 1 2 2 2 1 1 1 1 1 1 2
-1 92
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 2 2 2 2 2 2 2
-1 93
-2 2 2 2 2 2 2 2 2 2 2 2
-1 1 2 2 2 1 1 1 2 1 1 2
-1 94
-1 1 2 2 2 1 1 1 2 2 2 2
-1 1 2 2 2 1 1 1 1 1 2 1
-1 95
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 2 2 2 2 2 2 2
-1 96
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 2 2 2 2 2 2 2
-1 97
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 1 1 1 1 1 2 2
-1 98
-2 2 2 2 2 2 2 2 2 2 2 2
-1 1 2 2 2 1 1 1 2 2 2 2
-1 99
-2 2 2 2 2 2 2 2 2 2 2 2
-1 1 2 2 2 1 1 1 1 1 2 2
-1 100
-2 2 2 2 1 2 2 2 2 2 2 2
-1 1 2 2 2 1 1 1 1 1 1 2
-0 101
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 2 2 2 2 2 2 2
-0 102
-2 2 2 2 2 2 2 2 2 2 2 2
-1 1 2 2 2 1 1 1 2 1 1 2
-0 103
-2 2 2 2 2 2 2 2 2 2 2 2
-1 1 2 2 2 1 1 1 2 1 1 2
-0 104
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 1 1 1 1 1 2 2
-0 105
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 1 1 2 2 2 2 2 2 2 2
-0 106
-2 2 2 2 2 2 2 2 2 2 2 2
-1 1 2 2 2 1 1 1 1 1 1 2
-0 107
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 2 2 2 2 2 2 2
-0 108
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 2 2 2 2 2 2 2
-0 109
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 1 1 1 1 1 2 1
-0 110
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 2 2 2 2 2 2 2
-0 111
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 2 2 2 2 2 2 2
-0 112
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 2 2 2 2 2 2 2
-0 113
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 1 1 1 1 1 2 1
-0 114
-2 2 2 2 2 2 2 2 2 2 2 2
-1 1 2 2 2 1 1 1 1 1 1 2
-0 115
-2 2 2 2 2 2 2 2 2 2 2 2
-1 1 2 2 2 1 1 1 1 1 1 2
-0 116
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 2 2 2 2 2 2 2
-0 117
-2 2 2 2 2 1 1 2 2 2 2 2
-2 2 1 1 2 2 2 2 2 2 2 2
-0 118
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 2 2 2 2 2 2 2
-0 119
-2 2 2 2 2 2 2 2 2 2 2 2
-1 1 2 2 2 1 1 1 1 1 1 2
-0 120
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 1 1 1 1 1 1 2
-0 121
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 1 1 1 1 1 2 1
-0 122
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 2 2 2 2 2 2 2
-0 123
-2 2 1 2 2 2 2 2 2 2 2 1
-1 1 2 2 2 2 2 2 2 2 2 2
-0 124
-2 2 2 2 2 1 1 1 1 1 1 2
-2 2 1 2 2 2 2 2 2 2 2 1
-0 125
-2 2 2 2 1 2 2 2 2 2 2 2
-1 1 2 2 2 1 1 1 1 1 1 2
-0 126
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 2 2 2 2 2 2 2
-0 127
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 1 1 2 2 2 2 2
-0 128
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 2 2 2 2 2 2 2
-0 129
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 2 2 2 2 2 2 2
-0 130
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 1 1 2 2 2 2 2 2 2 2
-0 131
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 2 2 2 2 2 2 2
-0 132
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 1 2 2 2 2 2 2 2 2 1
-0 133
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 1 1 1 1 1 2 1
-0 134
-1 1 2 2 2 2 2 2 2 2 2 2
-1 1 2 2 2 1 1 1 1 1 2 1
-0 135
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 1 1 2 2 2 2 2 2 2 2
-0 136
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 1 1 2 2 2 2 2
-0 137
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 1 1 2 2 2 2 2 2 2 2
-0 138
-(2) (2) 2 2 2 2 2 2 2 2 2 2
-(1) (1) 2 2 2 1 1 1 1 1 2 1
-0 139
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 2 2 2 2 2 2 2
-0 140
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 2 2 2 2 2 2 2
-0 141
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 2 2 2 2 2 2 2
-0 142
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 2 2 2 2 2 2 2
-0 143
-2 2 2 2 2 1 1 2 2 2 2 2
-1 1 2 2 2 1 1 1 1 1 2 1
-0 144
-2 2 2 2 2 1 1 1 1 1 2 1
-2 2 1 1 2 2 2 2 2 2 2 2
-0 145
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 2 2 2 2 2 2 2
-0 146
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 2 2 2 2 2 2 2
-0 147
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 2 2 2 2 2 2 2
-0 148
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 1 1 2 2 2 2 2 2 2 2
-0 149
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 2 2 2 2 2 2 2
-0 150
-(2) (2) 2 2 2 2 2 2 2 2 2 2
-(1) (1) 2 2 2 1 1 1 1 1 2 1
-0 151
-2 2 2 2 2 1 1 1 1 1 2 2
-1 1 2 2 2 1 1 1 2 2 2 2
-0 152
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 1 1 1 1 1 2 1
-0 153
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 2 2 2 2 2 2 2
-0 154
-2 2 2 2 2 1 1 1 1 1 2 2
-2 2 1 2 2 2 2 2 2 2 2 1
-0 155
-2 2 2 2 2 2 2 2 2 2 2 2
-1 1 2 2 2 1 1 1 1 1 1 2
-0 156
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 1 1 2 2 2 2 2 2 2 2
-0 157
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 1 1 1 1 1 2 1
-0 158
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 1 1 2 2 2 2 2 2 2 2
-0 159
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 2 2 2 2 2 2 2
-0 160
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 1 1 2 2 2 2 2
-0 161
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 2 2 2 2 2 2 2
-0 162
-2 2 2 2 2 2 2 2 2 2 2 2
-1 1 2 2 2 1 1 1 2 1 1 2
-0 163
-2 2 2 2 2 2 2 2 2 2 2 2
-1 1 2 2 2 1 1 1 1 1 1 2
-0 164
-2 2 2 2 2 2 2 2 2 2 2 2
-1 1 2 2 2 1 1 1 1 1 1 2
-0 165
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 2 2 2 2 2 2 2
-0 166
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 2 2 2 2 2 2 2
-0 167
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 2 2 2 2 2 2 2
-0 168
-2 2 1 2 2 2 2 2 2 2 2 1
-1 1 2 2 2 1 1 1 1 1 2 2
-0 169
-1 1 2 2 2 2 2 2 2 2 2 2
-1 1 2 2 2 1 1 1 2 2 2 2
-0 170
-2 2 2 2 2 1 1 1 1 1 2 1
-2 2 2 2 2 1 1 1 1 1 2 1
-0 171
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 1 1 2 2 2 2 2 2 2 2
-0 172
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 2 2 2 2 2 2 2
-0 173
-2 2 2 2 2 2 2 2 2 2 2 2
-1 1 2 2 2 1 1 1 1 1 2 2
-0 174
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 2 2 2 2 2 2 2
-0 175
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 1 1 1 1 1 2 2
-0 176
-2 2 2 2 2 2 2 2 2 2 2 2
-1 1 2 2 2 1 1 1 1 1 1 2
-0 177
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 2 2 2 2 2 2 2
-0 178
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 2 2 2 2 2 2 2
-0 179
-2 2 2 2 2 2 2 2 2 2 2 2
-1 1 2 2 2 2 2 2 2 2 2 2
-0 180
-2 2 2 2 2 2 2 2 2 2 2 2
-1 1 2 2 2 1 1 1 1 1 1 2
-0 181
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 2 2 2 2 2 2 2
-0 182
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 2 2 2 2 2 2 2
-0 183
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 1 1 2 2 2 2 2 2 2 2
-0 184
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 1 1 2 2 2 2 2 2 2 2
-0 185
-2 2 2 2 2 2 2 2 2 2 2 2
-1 1 2 2 2 1 1 1 1 1 1 2
-0 186
-2 2 2 2 2 2 2 2 2 2 2 2
-1 1 2 2 2 1 1 1 1 1 1 2
-0 187
-2 2 2 2 1 2 2 2 2 2 2 2
-2 2 1 2 2 2 2 2 2 2 2 1
-0 188
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 2 2 2 2 2 2 2
-0 189
-2 2 2 2 2 2 2 2 2 2 2 2
-1 1 2 2 2 1 1 1 1 1 1 2
-0 190
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 2 2 2 2 2 2 2
-0 191
-2 2 2 2 2 2 2 2 2 2 2 2
-1 1 2 2 2 1 1 1 1 1 1 2
-0 192
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 1 1 2 2 2 2 2
-0 193
-2 2 1 1 2 2 2 2 2 2 2 2
-1 1 2 2 2 1 1 1 1 1 1 2
-0 194
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 2 2 2 2 2 2 2
-0 195
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 2 2 2 2 2 2 2
-0 196
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 1 1 1 1 1 2 1
-0 197
-2 2 2 2 2 2 2 2 2 2 2 2
-1 1 2 2 2 1 1 1 2 1 1 2
-0 198
-2 2 2 2 2 1 1 1 1 1 2 1
-2 2 2 2 1 2 2 2 2 2 2 2
-0 199
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 2 2 2 2 2 2 2
-0 200
-2 2 2 2 2 2 2 2 2 2 2 2
-2 2 2 2 2 2 2 2 2 2 2 2
-END BESTPAIRS1
-
-
-Haplotype estimates for each individual, with uncertain phases enclosed in ()
-and uncertain genotypes enclosed in []
-with phase known positions indicated by =
-
-BEGIN BESTPAIRS2
-1 1
-= = = = = = = = = = = =
-= = = = = = = = = = = =
-1 2
-2 2 = = = 2 2 2 = = = =
-1 1 = = = 1 1 1 = = = =
-1 3
-(2) (2) = = = 2 2 2 2 2 = 2
-(1) (1) = = = 1 1 1 1 1 = 1
-1 4
-= = = = = = = = = = = =
-= = = = = = = = = = = =
-1 5
-2 2 1 = = = = = = = = 1
-1 1 2 = = = = = = = = 2
-1 6
-= = = = = 2 2 2 = = = =
-= = = = = 1 1 1 = = = =
-1 7
-2 2 = = = = = = = = = =
-1 1 = = = = = = = = = =
-1 8
-= = = = = = = = = = = =
-= = = = = = = = = = = =
-1 9
-2 2 = = = 2 2 2 2 2 2 =
-1 1 = = = 1 1 1 1 1 1 =
-1 10
-2 2 = = = 2 2 2 2 2 = =
-1 1 = = = 1 1 1 1 1 = =
-1 11
-= = = = = = = = = = 2 1
-= = = = = = = = = = 1 2
-1 12
-= = = = = 2 2 2 2 2 2 =
-= = = = = 1 1 1 1 1 1 =
-1 13
-= = = = = = = = = = = =
-= = = = = = = = = = = =
-1 14
-= = = = = 2 2 2 2 2 2 =
-= = = = = 1 1 1 1 1 1 =
-1 15
-2 2 = = = 2 2 2 2 2 2 =
-1 1 = = = 1 1 1 1 1 1 =
-1 16
-= = = = = = = = = = = =
-= = = = = = = = = = = =
-1 17
-= = = = = 2 2 2 2 2 2 =
-= = = = = 1 1 1 1 1 1 =
-1 18
-2 2 = = = 2 2 2 = 2 2 =
-1 1 = = = 1 1 1 = 1 1 =
-1 19
-2 2 = = = 2 2 2 2 2 2 =
-1 1 = = = 1 1 1 1 1 1 =
-1 20
-2 2 = = = 2 2 2 = = = =
-1 1 = = = 1 1 1 = = = =
-1 21
-2 2 = = = 2 2 2 2 2 = =
-1 1 = = = 1 1 1 1 1 = =
-1 22
-2 2 = = = 2 2 2 = = = =
-1 1 = = = 1 1 1 = = = =
-1 23
-= = = = = 2 2 2 2 2 2 =
-= = = = = 1 1 1 1 1 1 =
-1 24
-2 2 = = = 2 2 2 2 2 2 =
-1 1 = = = 1 1 1 1 1 1 =
-1 25
-2 2 = = = = = = = = = =
-1 1 = = = = = = = = = =
-1 26
-2 2 = = = 2 2 2 2 2 2 =
-1 1 = = = 1 1 1 1 1 1 =
-1 27
-2 2 1 1 = 2 2 2 2 2 = =
-1 1 2 2 = 1 1 1 1 1 = =
-1 28
-2 2 = = = = = = = = = =
-1 1 = = = = = = = = = =
-1 29
-= = = = = = = = = = = =
-= = = = = = = = = = = =
-1 30
-= = = = = 2 2 = = = = =
-= = = = = 1 1 = = = = =
-1 31
-= = = = = 2 2 2 = = = =
-= = = = = 1 1 1 = = = =
-1 32
-= = = = = = = = = = = =
-= = = = = = = = = = = =
-1 33
-2 2 = = = = = = = = = =
-1 1 = = = = = = = = = =
-1 34
-= = = = = 2 2 2 = 2 2 =
-= = = = = 1 1 1 = 1 1 =
-1 35
-= = = = = 2 2 = = = = =
-= = = = = 1 1 = = = = =
-1 36
-2 2 = = = 2 2 2 2 2 2 =
-1 1 = = = 1 1 1 1 1 1 =
-1 37
-(2) (2) = = = 2 2 2 2 2 = 2
-(1) (1) = = = 1 1 1 1 1 = 1
-1 38
-(2) (2) = = = 2 2 2 2 2 = 2
-(1) (1) = = = 1 1 1 1 1 = 1
-1 39
-= = = = = 2 2 = = = = =
-= = = = = 1 1 = = = = =
-1 40
-= = = = = = = = = = 2 =
-= = = = = = = = = = 1 =
-1 41
-2 2 = = = 2 2 2 2 2 = =
-1 1 = = = 1 1 1 1 1 = =
-1 42
-2 2 = = = = = = = = = =
-1 1 = = = = = = = = = =
-1 43
-= = = = = = = = = = = =
-= = = = = = = = = = = =
-1 44
-= = = = = 2 2 2 2 2 = 2
-= = = = = 1 1 1 1 1 = 1
-1 45
-= = = = = = = = = = = =
-= = = = = = = = = = = =
-1 46
-= = = = = 2 2 2 2 2 2 =
-= = = = = 1 1 1 1 1 1 =
-1 47
-= = = = = = = = = = = =
-= = = = = = = = = = = =
-1 48
-2 2 = = = 2 2 2 = 2 2 =
-1 1 = = = 1 1 1 = 1 1 =
-1 49
-2 2 = = = 2 2 2 = = = =
-1 1 = = = 1 1 1 = = = =
-1 50
-2 2 = = = 2 2 2 2 2 2 =
-1 1 = = = 1 1 1 1 1 1 =
-1 51
-= = = = = = = = = = = 2
-= = = = = = = = = = = 1
-1 52
-2 2 = = = 2 2 2 2 2 2 =
-1 1 = = = 1 1 1 1 1 1 =
-1 53
-2 2 = = = 2 2 2 2 2 2 =
-1 1 = = = 1 1 1 1 1 1 =
-1 54
-2 2 = = = 2 2 2 2 2 2 =
-1 1 = = = 1 1 1 1 1 1 =
-1 55
-= = = = = = = = = = = =
-= = = = = = = = = = = =
-1 56
-(2) (2) = = = 2 2 2 2 2 = 2
-(1) (1) = = = 1 1 1 1 1 = 1
-1 57
-= = 2 2 = = = = = = = =
-= = 1 1 = = = = = = = =
-1 58
-(2) (2) = = = = = = = = 2 1
-(1) (1) = = = = = = = = 1 2
-1 59
-2 2 = = = 2 2 2 2 2 2 =
-1 1 = = = 1 1 1 1 1 1 =
-1 60
-= = = = = 2 2 2 2 2 2 =
-= = = = = 1 1 1 1 1 1 =
-1 61
-= = = = = 2 2 2 2 2 = 2
-= = = = = 1 1 1 1 1 = 1
-1 62
-2 2 = = = = = = = = = =
-1 1 = = = = = = = = = =
-1 63
-(2) (2) = = = 2 2 2 2 2 = 2
-(1) (1) = = = 1 1 1 1 1 = 1
-1 64
-2 2 = = = 2 2 2 2 2 2 =
-1 1 = = = 1 1 1 1 1 1 =
-1 65
-2 2 = = = = = = 1 = 2 1
-1 1 = = = = = = 2 = 1 2
-1 66
-= = = = = = = = 2 = 1 =
-= = = = = = = = 1 = 2 =
-1 67
-2 2 = = = 2 2 2 2 2 = =
-1 1 = = = 1 1 1 1 1 = =
-1 68
-2 2 = = = = = = = = = =
-1 1 = = = = = = = = = =
-1 69
-= = = = = = = = = 2 2 =
-= = = = = = = = = 1 1 =
-1 70
-= = = = = = = = = = = =
-= = = = = = = = = = = =
-1 71
-2 2 = = = = = = = = = =
-1 1 = = = = = = = = = =
-1 72
-= = = = = = = = = = = =
-= = = = = = = = = = = =
-1 73
-= = = = = 2 2 2 = = = =
-= = = = = 1 1 1 = = = =
-1 74
-(2) (2) = = = 2 2 2 2 2 = 2
-(1) (1) = = = 1 1 1 1 1 = 1
-1 75
-2 2 = = = 2 2 2 = 2 2 =
-1 1 = = = 1 1 1 = 1 1 =
-1 76
-2 2 = = = 2 2 2 2 2 2 =
-1 1 = = = 1 1 1 1 1 1 =
-1 77
-= = = = = = = = = = = =
-= = = = = = = = = = = =
-1 78
-2 2 = = = 2 2 2 2 2 2 =
-1 1 = = = 1 1 1 1 1 1 =
-1 79
-2 2 = = = 2 2 2 2 2 2 =
-1 1 = = = 1 1 1 1 1 1 =
-1 80
-= = 2 = = = = = = = = 2
-= = 1 = = = = = = = = 1
-1 81
-= = = = = = = = = = = =
-= = = = = = = = = = = =
-1 82
-= = = = = = = = = = = =
-= = = = = = = = = = = =
-1 83
-2 2 = = = 2 2 2 2 2 2 =
-1 1 = = = 1 1 1 1 1 1 =
-1 84
-= = 2 = = = = = = = = 2
-= = 1 = = = = = = = = 1
-1 85
-= = = = = = = = = = = =
-= = = = = = = = = = = =
-1 86
-= = = = = = = = 2 2 2 =
-= = = = = = = = 1 1 1 =
-1 87
-(2) (2) = = = 2 2 2 2 2 = 2
-(1) (1) = = = 1 1 1 1 1 = 1
-1 88
-= = = = = = = = = = = =
-= = = = = = = = = = = =
-1 89
-(2) (2) = = = = = = = = 2 1
-(1) (1) = = = = = = = = 1 2
-1 90
-= = = = = 2 2 2 2 2 = =
-= = = = = 1 1 1 1 1 = =
-1 91
-2 2 = = = 2 2 2 2 2 2 =
-1 1 = = = 1 1 1 1 1 1 =
-1 92
-= = = = = = = = = = = =
-= = = = = = = = = = = =
-1 93
-2 2 = = = 2 2 2 = 2 2 =
-1 1 = = = 1 1 1 = 1 1 =
-1 94
-= = = = = = = = 2 2 = 2
-= = = = = = = = 1 1 = 1
-1 95
-= = = = = = = = = = = =
-= = = = = = = = = = = =
-1 96
-= = = = = = = = = = = =
-= = = = = = = = = = = =
-1 97
-= = = = = 2 2 2 2 2 = =
-= = = = = 1 1 1 1 1 = =
-1 98
-2 2 = = = 2 2 2 = = = =
-1 1 = = = 1 1 1 = = = =
-1 99
-2 2 = = = 2 2 2 2 2 = =
-1 1 = = = 1 1 1 1 1 = =
-1 100
-2 2 = = 1 2 2 2 2 2 2 =
-1 1 = = 2 1 1 1 1 1 1 =
-0 101
-= = = = = = = = = = = =
-= = = = = = = = = = = =
-0 102
-2 2 = = = 2 2 2 = 2 2 =
-1 1 = = = 1 1 1 = 1 1 =
-0 103
-2 2 = = = 2 2 2 = 2 2 =
-1 1 = = = 1 1 1 = 1 1 =
-0 104
-= = = = = 2 2 2 2 2 = =
-= = = = = 1 1 1 1 1 = =
-0 105
-= = 2 2 = = = = = = = =
-= = 1 1 = = = = = = = =
-0 106
-2 2 = = = 2 2 2 2 2 2 =
-1 1 = = = 1 1 1 1 1 1 =
-0 107
-= = = = = = = = = = = =
-= = = = = = = = = = = =
-0 108
-= = = = = = = = = = = =
-= = = = = = = = = = = =
-0 109
-= = = = = 2 2 2 2 2 = 2
-= = = = = 1 1 1 1 1 = 1
-0 110
-= = = = = = = = = = = =
-= = = = = = = = = = = =
-0 111
-= = = = = = = = = = = =
-= = = = = = = = = = = =
-0 112
-= = = = = = = = = = = =
-= = = = = = = = = = = =
-0 113
-= = = = = 2 2 2 2 2 = 2
-= = = = = 1 1 1 1 1 = 1
-0 114
-2 2 = = = 2 2 2 2 2 2 =
-1 1 = = = 1 1 1 1 1 1 =
-0 115
-2 2 = = = 2 2 2 2 2 2 =
-1 1 = = = 1 1 1 1 1 1 =
-0 116
-= = = = = = = = = = = =
-= = = = = = = = = = = =
-0 117
-= = 2 2 = 1 1 = = = = =
-= = 1 1 = 2 2 = = = = =
-0 118
-= = = = = = = = = = = =
-= = = = = = = = = = = =
-0 119
-2 2 = = = 2 2 2 2 2 2 =
-1 1 = = = 1 1 1 1 1 1 =
-0 120
-= = = = = 2 2 2 2 2 2 =
-= = = = = 1 1 1 1 1 1 =
-0 121
-= = = = = 2 2 2 2 2 = 2
-= = = = = 1 1 1 1 1 = 1
-0 122
-= = = = = = = = = = = =
-= = = = = = = = = = = =
-0 123
-2 2 1 = = = = = = = = 1
-1 1 2 = = = = = = = = 2
-0 124
-= = 2 = = 1 1 1 1 1 1 2
-= = 1 = = 2 2 2 2 2 2 1
-0 125
-2 2 = = 1 2 2 2 2 2 2 =
-1 1 = = 2 1 1 1 1 1 1 =
-0 126
-= = = = = = = = = = = =
-= = = = = = = = = = = =
-0 127
-= = = = = 2 2 = = = = =
-= = = = = 1 1 = = = = =
-0 128
-= = = = = = = = = = = =
-= = = = = = = = = = = =
-0 129
-= = = = = = = = = = = =
-= = = = = = = = = = = =
-0 130
-= = 2 2 = = = = = = = =
-= = 1 1 = = = = = = = =
-0 131
-= = = = = = = = = = = =
-= = = = = = = = = = = =
-0 132
-= = 2 = = = = = = = = 2
-= = 1 = = = = = = = = 1
-0 133
-= = = = = 2 2 2 2 2 = 2
-= = = = = 1 1 1 1 1 = 1
-0 134
-= = = = = 2 2 2 2 2 = 2
-= = = = = 1 1 1 1 1 = 1
-0 135
-= = 2 2 = = = = = = = =
-= = 1 1 = = = = = = = =
-0 136
-= = = = = 2 2 = = = = =
-= = = = = 1 1 = = = = =
-0 137
-= = 2 2 = = = = = = = =
-= = 1 1 = = = = = = = =
-0 138
-(2) (2) = = = 2 2 2 2 2 = 2
-(1) (1) = = = 1 1 1 1 1 = 1
-0 139
-= = = = = = = = = = = =
-= = = = = = = = = = = =
-0 140
-= = = = = = = = = = = =
-= = = = = = = = = = = =
-0 141
-= = = = = = = = = = = =
-= = = = = = = = = = = =
-0 142
-= = = = = = = = = = = =
-= = = = = = = = = = = =
-0 143
-2 2 = = = = = 2 2 2 = 2
-1 1 = = = = = 1 1 1 = 1
-0 144
-= = 2 2 = 1 1 1 1 1 = 1
-= = 1 1 = 2 2 2 2 2 = 2
-0 145
-= = = = = = = = = = = =
-= = = = = = = = = = = =
-0 146
-= = = = = = = = = = = =
-= = = = = = = = = = = =
-0 147
-= = = = = = = = = = = =
-= = = = = = = = = = = =
-0 148
-= = 2 2 = = = = = = = =
-= = 1 1 = = = = = = = =
-0 149
-= = = = = = = = = = = =
-= = = = = = = = = = = =
-0 150
-(2) (2) = = = 2 2 2 2 2 = 2
-(1) (1) = = = 1 1 1 1 1 = 1
-0 151
-2 2 = = = = = = 1 1 = =
-1 1 = = = = = = 2 2 = =
-0 152
-= = = = = 2 2 2 2 2 = 2
-= = = = = 1 1 1 1 1 = 1
-0 153
-= = = = = = = = = = = =
-= = = = = = = = = = = =
-0 154
-= = 2 = = 1 1 1 1 1 = 2
-= = 1 = = 2 2 2 2 2 = 1
-0 155
-2 2 = = = 2 2 2 2 2 2 =
-1 1 = = = 1 1 1 1 1 1 =
-0 156
-= = 2 2 = = = = = = = =
-= = 1 1 = = = = = = = =
-0 157
-= = = = = 2 2 2 2 2 = 2
-= = = = = 1 1 1 1 1 = 1
-0 158
-= = 2 2 = = = = = = = =
-= = 1 1 = = = = = = = =
-0 159
-= = = = = = = = = = = =
-= = = = = = = = = = = =
-0 160
-= = = = = 2 2 = = = = =
-= = = = = 1 1 = = = = =
-0 161
-= = = = = = = = = = = =
-= = = = = = = = = = = =
-0 162
-2 2 = = = 2 2 2 = 2 2 =
-1 1 = = = 1 1 1 = 1 1 =
-0 163
-2 2 = = = 2 2 2 2 2 2 =
-1 1 = = = 1 1 1 1 1 1 =
-0 164
-2 2 = = = 2 2 2 2 2 2 =
-1 1 = = = 1 1 1 1 1 1 =
-0 165
-= = = = = = = = = = = =
-= = = = = = = = = = = =
-0 166
-= = = = = = = = = = = =
-= = = = = = = = = = = =
-0 167
-= = = = = = = = = = = =
-= = = = = = = = = = = =
-0 168
-2 2 1 = = 2 2 2 2 2 = 1
-1 1 2 = = 1 1 1 1 1 = 2
-0 169
-= = = = = 2 2 2 = = = =
-= = = = = 1 1 1 = = = =
-0 170
-= = = = = = = = = = = =
-= = = = = = = = = = = =
-0 171
-= = 2 2 = = = = = = = =
-= = 1 1 = = = = = = = =
-0 172
-= = = = = = = = = = = =
-= = = = = = = = = = = =
-0 173
-2 2 = = = 2 2 2 2 2 = =
-1 1 = = = 1 1 1 1 1 = =
-0 174
-= = = = = = = = = = = =
-= = = = = = = = = = = =
-0 175
-= = = = = 2 2 2 2 2 = =
-= = = = = 1 1 1 1 1 = =
-0 176
-2 2 = = = 2 2 2 2 2 2 =
-1 1 = = = 1 1 1 1 1 1 =
-0 177
-= = = = = = = = = = = =
-= = = = = = = = = = = =
-0 178
-= = = = = = = = = = = =
-= = = = = = = = = = = =
-0 179
-2 2 = = = = = = = = = =
-1 1 = = = = = = = = = =
-0 180
-2 2 = = = 2 2 2 2 2 2 =
-1 1 = = = 1 1 1 1 1 1 =
-0 181
-= = = = = = = = = = = =
-= = = = = = = = = = = =
-0 182
-= = = = = = = = = = = =
-= = = = = = = = = = = =
-0 183
-= = 2 2 = = = = = = = =
-= = 1 1 = = = = = = = =
-0 184
-= = 2 2 = = = = = = = =
-= = 1 1 = = = = = = = =
-0 185
-2 2 = = = 2 2 2 2 2 2 =
-1 1 = = = 1 1 1 1 1 1 =
-0 186
-2 2 = = = 2 2 2 2 2 2 =
-1 1 = = = 1 1 1 1 1 1 =
-0 187
-= = 2 = 1 = = = = = = 2
-= = 1 = 2 = = = = = = 1
-0 188
-= = = = = = = = = = = =
-= = = = = = = = = = = =
-0 189
-2 2 = = = 2 2 2 2 2 2 =
-1 1 = = = 1 1 1 1 1 1 =
-0 190
-= = = = = = = = = = = =
-= = = = = = = = = = = =
-0 191
-2 2 = = = 2 2 2 2 2 2 =
-1 1 = = = 1 1 1 1 1 1 =
-0 192
-= = = = = 2 2 = = = = =
-= = = = = 1 1 = = = = =
-0 193
-2 2 1 1 = 2 2 2 2 2 2 =
-1 1 2 2 = 1 1 1 1 1 1 =
-0 194
-= = = = = = = = = = = =
-= = = = = = = = = = = =
-0 195
-= = = = = = = = = = = =
-= = = = = = = = = = = =
-0 196
-= = = = = 2 2 2 2 2 = 2
-= = = = = 1 1 1 1 1 = 1
-0 197
-2 2 = = = 2 2 2 = 2 2 =
-1 1 = = = 1 1 1 = 1 1 =
-0 198
-= = = = 2 1 1 1 1 1 = 1
-= = = = 1 2 2 2 2 2 = 2
-0 199
-= = = = = = = = = = = =
-= = = = = = = = = = = =
-0 200
-= = = = = = = = = = = =
-= = = = = = = = = = = =
-END BESTPAIRS2
-
-
-Phase probabilities at each site
-with phase known positions indicated by =
-and missing data positions indicated by ?
-
-BEGIN PHASEPROBS
-= = = = = = = = = = = =
-1.00 1.00 = = = 1.00 1.00 1.00 = = = =
-0.87 0.87 = = = 1.00 1.00 1.00 1.00 1.00 = 1.00
-= = = = = = = = = = = =
-1.00 1.00 1.00 = = = = = = = = 1.00
-= = = = = 1.00 1.00 1.00 = = = =
-1.00 1.00 = = = = = = = = = =
-= = = = = = = = = = = =
-0.98 0.98 = = = 1.00 1.00 1.00 1.00 1.00 1.00 =
-0.93 0.93 = = = 1.00 1.00 1.00 1.00 1.00 = =
-= = = = = = = = = = 1.00 1.00
-= = = = = 1.00 1.00 1.00 1.00 1.00 1.00 =
-= = = = = = = = = = = =
-= = = = = 1.00 1.00 1.00 1.00 1.00 1.00 =
-0.98 0.98 = = = 1.00 1.00 1.00 1.00 1.00 1.00 =
-= = = = = = = = = = = =
-= = = = = 1.00 1.00 1.00 1.00 1.00 1.00 =
-1.00 1.00 = = = 1.00 1.00 1.00 = 1.00 1.00 =
-0.98 0.98 = = = 1.00 1.00 1.00 1.00 1.00 1.00 =
-1.00 1.00 = = = 1.00 1.00 1.00 = = = =
-0.93 0.93 = = = 1.00 1.00 1.00 1.00 1.00 = =
-1.00 1.00 = = = 1.00 1.00 1.00 = = = =
-= = = = = 1.00 1.00 1.00 1.00 1.00 1.00 =
-0.98 0.98 = = = 1.00 1.00 1.00 1.00 1.00 1.00 =
-1.00 1.00 = = = = = = = = = =
-0.98 0.98 = = = 1.00 1.00 1.00 1.00 1.00 1.00 =
-1.00 1.00 1.00 1.00 = 1.00 1.00 1.00 1.00 1.00 = =
-1.00 1.00 = = = = = = = = = =
-= = = = = = = = = = = =
-= = = = = 1.00 1.00 = = = = =
-= = = = = 1.00 1.00 1.00 = = = =
-= = = = = = = = = = = =
-1.00 1.00 = = = = = = = = = =
-= = = = = 1.00 1.00 1.00 = 1.00 1.00 =
-= = = = = 1.00 1.00 = = = = =
-0.98 0.98 = = = 1.00 1.00 1.00 1.00 1.00 1.00 =
-0.86 0.86 = = = 1.00 1.00 1.00 1.00 1.00 = 1.00
-0.86 0.86 = = = 1.00 1.00 1.00 1.00 1.00 = 1.00
-= = = = = 1.00 1.00 = = = = =
-= = = = = = = = = = 1.00 =
-0.93 0.93 = = = 1.00 1.00 1.00 1.00 1.00 = =
-1.00 1.00 = = = = = = = = = =
-= = = = = = = = = = = =
-= = = = = 1.00 1.00 1.00 1.00 1.00 = 1.00
-= = = = = = = = = = = =
-= = = = = 1.00 1.00 1.00 1.00 1.00 1.00 =
-= = = = = = = = = = = =
-1.00 1.00 = = = 1.00 1.00 1.00 = 1.00 1.00 =
-1.00 1.00 = = = 1.00 1.00 1.00 = = = =
-0.98 0.98 = = = 1.00 1.00 1.00 1.00 1.00 1.00 =
-= = = = = = = = = = = 1.00
-0.98 0.98 = = = 1.00 1.00 1.00 1.00 1.00 1.00 =
-0.98 0.98 = = = 1.00 1.00 1.00 1.00 1.00 1.00 =
-0.98 0.98 = = = 1.00 1.00 1.00 1.00 1.00 1.00 =
-= = = = = = = = = = = =
-0.86 0.86 = = = 1.00 1.00 1.00 1.00 1.00 = 1.00
-= = 1.00 1.00 = = = = = = = =
-0.90 0.90 = = = = = = = = 1.00 1.00
-0.98 0.98 = = = 1.00 1.00 1.00 1.00 1.00 1.00 =
-= = = = = 1.00 1.00 1.00 1.00 1.00 1.00 =
-= = = = = 1.00 1.00 1.00 1.00 1.00 = 1.00
-1.00 1.00 = = = = = = = = = =
-0.86 0.86 = = = 1.00 1.00 1.00 1.00 1.00 = 1.00
-0.98 0.98 = = = 1.00 1.00 1.00 1.00 1.00 1.00 =
-1.00 1.00 = = = = = = 1.00 = 1.00 1.00
-= = = = = = = = 1.00 = 1.00 =
-0.93 0.93 = = = 1.00 1.00 1.00 1.00 1.00 = =
-1.00 1.00 = = = = = = = = = =
-= = = = = = = = = 1.00 1.00 =
-= = = = = = = = = = = =
-1.00 1.00 = = = = = = = = = =
-= = = = = = = = = = = =
-= = = = = 1.00 1.00 1.00 = = = =
-0.86 0.86 = = = 1.00 1.00 1.00 1.00 1.00 = 1.00
-1.00 1.00 = = = 1.00 1.00 1.00 = 1.00 1.00 =
-0.98 0.98 = = = 1.00 1.00 1.00 1.00 1.00 1.00 =
-= = = = = = = = = = = =
-0.98 0.98 = = = 1.00 1.00 1.00 1.00 1.00 1.00 =
-0.98 0.98 = = = 1.00 1.00 1.00 1.00 1.00 1.00 =
-= = 1.00 = = = = = = = = 1.00
-= = = = = = = = = = = =
-= = = = = = = = = = = =
-0.98 0.98 = = = 1.00 1.00 1.00 1.00 1.00 1.00 =
-= = 1.00 = = = = = = = = 1.00
-= = = = = = = = = = = =
-= = = = = = = = 1.00 1.00 1.00 =
-0.87 0.87 = = = 1.00 1.00 1.00 1.00 1.00 = 1.00
-= = = = = = = = = = = =
-0.89 0.89 = = = = = = = = 1.00 1.00
-= = = = = 1.00 1.00 1.00 1.00 1.00 = =
-0.98 0.98 = = = 1.00 1.00 1.00 1.00 1.00 1.00 =
-= = = = = = = = = = = =
-1.00 1.00 = = = 1.00 1.00 1.00 = 1.00 1.00 =
-= = = = = = = = 1.00 1.00 = 1.00
-= = = = = = = = = = = =
-= = = = = = = = = = = =
-= = = = = 1.00 1.00 1.00 1.00 1.00 = =
-1.00 1.00 = = = 1.00 1.00 1.00 = = = =
-0.93 0.93 = = = 1.00 1.00 1.00 1.00 1.00 = =
-1.00 1.00 = = 0.92 1.00 1.00 1.00 1.00 1.00 1.00 =
-= = = = = = = = = = = =
-1.00 1.00 = = = 1.00 1.00 1.00 = 1.00 1.00 =
-1.00 1.00 = = = 1.00 1.00 1.00 = 1.00 1.00 =
-= = = = = 1.00 1.00 1.00 1.00 1.00 = =
-= = 1.00 1.00 = = = = = = = =
-0.98 0.98 = = = 1.00 1.00 1.00 1.00 1.00 1.00 =
-= = = = = = = = = = = =
-= = = = = = = = = = = =
-= = = = = 1.00 1.00 1.00 1.00 1.00 = 1.00
-= = = = = = = = = = = =
-= = = = = = = = = = = =
-= = = = = = = = = = = =
-= = = = = 1.00 1.00 1.00 1.00 1.00 = 1.00
-0.98 0.98 = = = 1.00 1.00 1.00 1.00 1.00 1.00 =
-0.98 0.98 = = = 1.00 1.00 1.00 1.00 1.00 1.00 =
-= = = = = = = = = = = =
-= = 1.00 1.00 = 1.00 1.00 = = = = =
-= = = = = = = = = = = =
-0.98 0.98 = = = 1.00 1.00 1.00 1.00 1.00 1.00 =
-= = = = = 1.00 1.00 1.00 1.00 1.00 1.00 =
-= = = = = 1.00 1.00 1.00 1.00 1.00 = 1.00
-= = = = = = = = = = = =
-1.00 1.00 1.00 = = = = = = = = 1.00
-= = 1.00 = = 1.00 1.00 1.00 1.00 1.00 1.00 1.00
-1.00 1.00 = = 0.93 1.00 1.00 1.00 1.00 1.00 1.00 =
-= = = = = = = = = = = =
-= = = = = 1.00 1.00 = = = = =
-= = = = = = = = = = = =
-= = = = = = = = = = = =
-= = 1.00 1.00 = = = = = = = =
-= = = = = = = = = = = =
-= = 1.00 = = = = = = = = 1.00
-= = = = = 1.00 1.00 1.00 1.00 1.00 = 1.00
-= = = = = 1.00 1.00 1.00 1.00 1.00 = 1.00
-= = 1.00 1.00 = = = = = = = =
-= = = = = 1.00 1.00 = = = = =
-= = 1.00 1.00 = = = = = = = =
-0.86 0.86 = = = 1.00 1.00 1.00 1.00 1.00 = 1.00
-= = = = = = = = = = = =
-= = = = = = = = = = = =
-= = = = = = = = = = = =
-= = = = = = = = = = = =
-1.00 1.00 = = = = = 1.00 1.00 1.00 = 1.00
-= = 1.00 1.00 = 1.00 1.00 1.00 1.00 1.00 = 1.00
-= = = = = = = = = = = =
-= = = = = = = = = = = =
-= = = = = = = = = = = =
-= = 1.00 1.00 = = = = = = = =
-= = = = = = = = = = = =
-0.86 0.86 = = = 1.00 1.00 1.00 1.00 1.00 = 1.00
-1.00 1.00 = = = = = = 1.00 1.00 = =
-= = = = = 1.00 1.00 1.00 1.00 1.00 = 1.00
-= = = = = = = = = = = =
-= = 0.97 = = 1.00 1.00 1.00 1.00 1.00 = 0.93
-0.98 0.98 = = = 1.00 1.00 1.00 1.00 1.00 1.00 =
-= = 1.00 1.00 = = = = = = = =
-= = = = = 1.00 1.00 1.00 1.00 1.00 = 1.00
-= = 1.00 1.00 = = = = = = = =
-= = = = = = = = = = = =
-= = = = = 1.00 1.00 = = = = =
-= = = = = = = = = = = =
-1.00 1.00 = = = 1.00 1.00 1.00 = 1.00 1.00 =
-0.98 0.98 = = = 1.00 1.00 1.00 1.00 1.00 1.00 =
-0.98 0.98 = = = 1.00 1.00 1.00 1.00 1.00 1.00 =
-= = = = = = = = = = = =
-= = = = = = = = = = = =
-= = = = = = = = = = = =
-1.00 1.00 0.98 = = 1.00 1.00 1.00 1.00 1.00 = 0.95
-= = = = = 1.00 1.00 1.00 = = = =
-= = = = = = = = = = = =
-= = 1.00 1.00 = = = = = = = =
-= = = = = = = = = = = =
-0.93 0.93 = = = 1.00 1.00 1.00 1.00 1.00 = =
-= = = = = = = = = = = =
-= = = = = 1.00 1.00 1.00 1.00 1.00 = =
-0.98 0.98 = = = 1.00 1.00 1.00 1.00 1.00 1.00 =
-= = = = = = = = = = = =
-= = = = = = = = = = = =
-1.00 1.00 = = = = = = = = = =
-0.98 0.98 = = = 1.00 1.00 1.00 1.00 1.00 1.00 =
-= = = = = = = = = = = =
-= = = = = = = = = = = =
-= = 1.00 1.00 = = = = = = = =
-= = 1.00 1.00 = = = = = = = =
-0.98 0.98 = = = 1.00 1.00 1.00 1.00 1.00 1.00 =
-0.98 0.98 = = = 1.00 1.00 1.00 1.00 1.00 1.00 =
-= = 1.00 = 0.96 = = = = = = 1.00
-= = = = = = = = = = = =
-0.98 0.98 = = = 1.00 1.00 1.00 1.00 1.00 1.00 =
-= = = = = = = = = = = =
-0.98 0.98 = = = 1.00 1.00 1.00 1.00 1.00 1.00 =
-= = = = = 1.00 1.00 = = = = =
-1.00 1.00 1.00 1.00 = 1.00 1.00 1.00 1.00 1.00 1.00 =
-= = = = = = = = = = = =
-= = = = = = = = = = = =
-= = = = = 1.00 1.00 1.00 1.00 1.00 = 1.00
-1.00 1.00 = = = 1.00 1.00 1.00 = 1.00 1.00 =
-= = = = 0.97 1.00 1.00 1.00 1.00 1.00 = 1.00
-= = = = = = = = = = = =
-= = = = = = = = = = = =
-END PHASEPROBS
diff --git a/Documentation/example_files/case_control/general/caco.prepaup b/Documentation/example_files/case_control/general/caco.prepaup
deleted file mode 100644
index 24960588c65ee26a477af1db87658717bf27adf8..0000000000000000000000000000000000000000
--- a/Documentation/example_files/case_control/general/caco.prepaup
+++ /dev/null
@@ -1,38 +0,0 @@
-#Nexus
-Begin data;
-dimension ntax=15 nchar=13;
-format symbols="0123456789" missing=?;
-matrix
-H004_c002_m009 1122211111222
-H006_c003_m001 2222122222222
-H005_c004_m010 1122211121122
-H008_c011_m005 2222211111212
-H011_c002_m011 1122211122222
-H002_c006_m003 2222211222222
-H010_c013_m002 2211222222222
-H009_c006_m003 2212222222212
-H001_c124_m095 2222222222222
-H003_c004_m018 1122222222222
-H014_c002_m003 2222211111122
-H013_c004_m010 1122211111212
-H007_c015_m028 1122211111122
-H012_c004_m002 2222211111222
-H000_ancetre [add ancestral haplotype]1
-;
-end;
-begin assumptions;
-ancstates *anc vector = [add ancestral haplotype]1;
-end;
-begin paup;
-set nowarnreset autoclose maxtrees = [2000] increase=[no - Auto AutoInc = 100] monitor = no taxlabels = full
-root=lundberg warnroot=no opt=[deltran - acctran] ancstates=anc;
-hsearch;
-savetrees [from=1 to=1] file=[test.tree] root=yes format=altnexus;
-cleartrees nowarn=yes;
-gettrees rooted=yes file=[test.tree];
-log file = [test.res.log] replace=[yes - no];
-describetrees [all] /plot=[cladogram - phylogram] brlens=yes rootmethod=lundberg apolist=yes;
-log stop;
-end;
-quit;
-[WARNING, this file is designed for bi-allelic data. If it is not the case, you may have to modify this input file, for example by specifying the ordered option in the typeset command in the assumption block]
diff --git a/Documentation/example_files/case_control/localisation/caco.loc b/Documentation/example_files/case_control/localisation/caco.loc
deleted file mode 100644
index a7f10a8d3c88432d7752b408f7d591166ee93b72..0000000000000000000000000000000000000000
--- a/Documentation/example_files/case_control/localisation/caco.loc
+++ /dev/null
@@ -1,29 +0,0 @@
-Localisation method using S-character
-
-Results:
-site number 1 sens 2-->1 V_i = 332.750855571227
-site number 2 sens 2-->1 V_i = 332.750855571227
-site number 8 sens 2-->1 V_i = 56.2247500212231
-site number 13 sens 2-->1 V_i = -14.9789566775473
-site number 5 sens 1-->2 V_i = -14.9789566775473
-site number 4 sens 1-->2 V_i = -14.9789566775473
-site number 3 sens 1-->2 V_i = -14.9789566775473
-site number 8 sens 1-->2 V_i = -14.9789566775473
-site number 6 sens 1-->2 V_i = -18.0812001805668
-site number 7 sens 1-->2 V_i = -18.0812001805668
-site number 10 sens 1-->2 V_i = -21.7027036634309
-site number 11 sens 2-->1 V_i = -24.0863497023422
-site number 11 sens 1-->2 V_i = -25.1629458775569
-site number 1 sens 1-->2 V_i = -25.5706785193404
-site number 2 sens 1-->2 V_i = -25.5706785193404
-site number 12 sens 1-->2 V_i = -25.944314009885
-site number 9 sens 1-->2 V_i = -27.9278456387342
-site number 4 sens 2-->1 V_i = -28.7855682792521
-site number 3 sens 2-->1 V_i = -28.7855682792521
-site number 13 sens 1-->2 V_i = -28.7855682792521
-site number 5 sens 2-->1 V_i = -28.7855682792521
-site number 10 sens 2-->1 V_i = -29.3582371280218
-site number 6 sens 2-->1 V_i = -31.8878117822717
-site number 7 sens 2-->1 V_i = -31.8878117822717
-site number 9 sens 2-->1 V_i = -33.2536989126136
-site number 12 sens 2-->1 V_i = -49.8580667844077
diff --git a/Documentation/example_files/case_control/localisation/caco.paup b/Documentation/example_files/case_control/localisation/caco.paup
deleted file mode 100644
index 23125500521652fd5eb21c3576944d44ff9123db..0000000000000000000000000000000000000000
--- a/Documentation/example_files/case_control/localisation/caco.paup
+++ /dev/null
@@ -1,38 +0,0 @@
-#Nexus
-Begin data;
-dimension ntax=14 nchar=13;
-format symbols="0123456789" missing=?;
-matrix
-H004_c002_m009 1122211111222
-H006_c003_m001 2222122222222
-H005_c004_m010 1122211121122
-H008_c011_m005 2222211111212
-H011_c002_m011 1122211122222
-H002_c006_m003 2222211222222
-H010_c013_m002 2211222222222
-H009_c006_m003 2212222222212
-[H001_c124_m095 2222222222222]
-H003_c004_m018 1122222222222
-H014_c002_m003 2222211111122
-H013_c004_m010 1122211111212
-H007_c015_m028 1122211111122
-H012_c004_m002 2222211111222
-H000_ancetre 2222222222221
-;
-end;
-begin assumptions;
-ancstates *anc vector = 2222222222221;
-end;
-begin paup;
-set nowarnreset autoclose maxtrees = 1000 increase=no[ - Auto AutoInc = 100] monitor = no taxlabels = full
-root=lundberg warnroot=no opt=deltran [- acctran] ancstates=anc;
-hsearch;
-savetrees from=1 to=1000 file=test.tree root=yes format=altnexus;
-cleartrees nowarn=yes;
-gettrees rooted=yes file=test.tree;
-log file = test.res.log replace=yes [- no];
-describetrees all /plot=cladogram [- phylogram] brlens=yes rootmethod=lundberg apolist=yes;
-log stop;
-end;
-quit;
-[WARNING, this file is designed for bi-allelic data. If it is not the case, you may have to modify this input file, for example by specifying the ordered option in the typeset command in the assumption block]
diff --git a/Documentation/example_files/case_control/localisation/correspond.txt b/Documentation/example_files/case_control/localisation/correspond.txt
deleted file mode 100644
index 6159f1513962be6e8b49e8a2aa753c28d9c86abc..0000000000000000000000000000000000000000
--- a/Documentation/example_files/case_control/localisation/correspond.txt
+++ /dev/null
@@ -1,13 +0,0 @@
-H004 m009 c002
-H006 m001 c003
-H005 m010 c004
-H008 m005 c011
-H011 m011 c002
-H002 m003 c006
-H010 m002 c013
-H009 m003 c006
-H003 m018 c004
-H014 m003 c002
-H013 m010 c004
-H007 m028 c015
-H012 m002 c004
diff --git a/Documentation/example_files/case_control/localisation/et_caco.paup b/Documentation/example_files/case_control/localisation/et_caco.paup
deleted file mode 100644
index 17bb3f7c941fbd952d87849bc576c5ec87660cca..0000000000000000000000000000000000000000
--- a/Documentation/example_files/case_control/localisation/et_caco.paup
+++ /dev/null
@@ -1,40 +0,0 @@
-#Nexus
-Begin data;
-dimension ntax=14 nchar=14;
-format symbols="0123456789CG" missing=?;
-matrix
-H004_m009_c002 11222111112221
-H006_m001_c003 22221222222220
-H005_m010_c004 11222111211221
-H008_m005_c011 22222111112120
-H011_m011_c002 11222111222221
-H002_m003_c006 22222112222220
-H010_m002_c013 22112222222220
-H009_m003_c006 22122222222120
-[H001_c124_m095 2222222222222]
-H003_m018_c004 11222222222221
-H014_m003_c002 2222211111122?
-H013_m010_c004 11222111112121
-H007_m028_c015 1122211111122?
-H012_m002_c004 22222111112220
-H000_ancetre 22222222222210
-;
-end;
-begin assumptions;
-ancstates *anc vector = 22222222222210;
-end;
-begin paup;
-exclude 14;
-set nowarnreset autoclose maxtrees = 1000 increase=no[ - Auto AutoInc = 100] monitor = no taxlabels = full
-root=lundberg warnroot=no opt=deltran [- acctran] ancstates=anc;
-hsearch;
-savetrees from=1 to=1000 file=test.tree root=yes format=altnexus;
-cleartrees nowarn=yes;
-gettrees rooted=yes file=test.tree;
-log file = test.res.log replace=yes [- no];
-include 14;
-describetrees all /plot=cladogram [- phylogram] brlens=yes rootmethod=lundberg apolist=yes;
-log stop;
-end;
-quit;
-[WARNING, this file is designed for bi-allelic data. If it is not the case, you may have to modify this input file, for example by specifying the ordered option in the typeset command in the assumption block]
diff --git a/Documentation/example_files/case_control/localisation/test.res.log b/Documentation/example_files/case_control/localisation/test.res.log
deleted file mode 100644
index d15a3c88a3bac1407531c509b32a56ae23ab23ef..0000000000000000000000000000000000000000
--- a/Documentation/example_files/case_control/localisation/test.res.log
+++ /dev/null
@@ -1,8872 +0,0 @@
-
-P A U P *
-Portable version 4.0b10 for Unix
-Tue Jul 5 16:13:26 2005
-
- -----------------------------NOTICE-----------------------------
- This is a beta-test version. Please report any crashes,
- apparent calculation errors, or other anomalous results.
- There are no restrictions on publication of results obtained
- with this version, but you should check the WWW site
- frequently for bug announcements and/or updated versions.
- See the README file on the distribution media for details.
- ----------------------------------------------------------------
-
-Character-exclusion status changed:
- 1 character re-included
- Total number of characters now excluded = 0
- Number of included characters = 14
-
-Tree description:
-
- Optimality criterion = parsimony
- Character-status summary:
- Of 14 total characters:
- All characters are of type 'unord'
- All characters have equal weight
- 2 characters are parsimony-uninformative
- Number of parsimony-informative characters = 12
- Character-state optimization: Delayed transformation (DELTRAN)
- AncStates = "anc"
-
-Tree number 1:
-
-Branch lengths and linkages for tree #1
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 21 root 0 0 0
- 20 21 1 1 1
- 18 20 2 2 2
- 17 18 3 3 3
- 16 17 3 3 3
-H004 m009 c002 (1) 16 0 0 0
- 15 16 1 1 1
-H005 m010 c004 (3) 15 1 1 1
-H011 m011 c002 (5) 15 1 1 1
-H013 m010 c004 (11) 16 1 1 1
-H007 m028 c015 (12) 16 1 1 1
-H008 m005 c011 (4) 17 1 1 1
-H014 m003 c002 (10) 17 1 1 1
-H012 m002 c004 (13) 17 0 0 0
-H002 m003 c006 (6) 18 0 0 0
-H006 m001 c003 (2) 20 1 1 1
- 19 20 1 1 1
-H010 m002 c013 (7) 19 1 1 1
-H009 m003 c006 (8) 19 1 1 1
-H003 m018 c004 (9) 20 3 3 3
-H000 ancetre (14) 21 0 0 0
--------------------------------------------------------------------------
-Sum 23
-
-Tree length = 23
-Consistency index (CI) = 0.6087
-Homoplasy index (HI) = 0.3913
-CI excluding uninformative characters = 0.5714
-HI excluding uninformative characters = 0.4286
-Retention index (RI) = 0.8085
-Rescaled consistency index (RC) = 0.4921
-
- /------------------ H004 m009 c002
- |
- | /--------- H005 m010 c004
- +-------15
- /-------16 \--------- H011 m011 c002
- | |
- | +------------------ H013 m010 c004
- | |
- | \------------------ H007 m028 c015
- /-------17
- | +--------------------------- H008 m005 c011
- | |
- | +--------------------------- H014 m003 c002
- /-------18 |
- | | \--------------------------- H012 m002 c004
- | |
- | \------------------------------------ H002 m003 c006
- |
- +--------------------------------------------- H006 m001 c003
- /-------20
- | | /--------- H010 m002 c013
- | +----------------------------------19
- | | \--------- H009 m003 c006
---------21 |
- | \--------------------------------------------- H003 m018 c004
- |
- \------------------------------------------------------ H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_21 --> node_20 13 1 1.000 1 ==> 2
- node_20 --> node_18 6 1 1.000 2 ==> 1
- 7 1 1.000 2 ==> 1
- node_18 --> node_17 8 1 1.000 2 ==> 1
- 9 1 0.500 2 ==> 1
- 10 1 0.500 2 ==> 1
- node_17 --> node_16 1 1 0.500 2 ==> 1
- 2 1 0.500 2 ==> 1
- 14 1 0.500 0 ==> 1
- node_16 --> node_15 9 1 0.500 1 ==> 2
- node_15 --> H005 m010 c004 11 1 0.333 2 ==> 1
- node_15 --> H011 m011 c002 10 1 0.500 1 ==> 2
- node_16 --> H013 m010 c004 12 1 0.333 2 ==> 1
- node_16 --> H007 m028 c015 11 1 0.333 2 ==> 1
- node_17 --> H008 m005 c011 12 1 0.333 2 ==> 1
- node_17 --> H014 m003 c002 11 1 0.333 2 ==> 1
- node_20 --> H006 m001 c003 5 1 1.000 2 ==> 1
- node_20 --> node_19 3 1 1.000 2 ==> 1
- node_19 --> H010 m002 c013 4 1 1.000 2 ==> 1
- node_19 --> H009 m003 c006 12 1 0.333 2 ==> 1
- node_20 --> H003 m018 c004 1 1 0.500 2 ==> 1
- 2 1 0.500 2 ==> 1
- 14 1 0.500 0 ==> 1
-
-Tree number 2:
-
-Branch lengths and linkages for tree #2
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 23 root 0 0 0
- 22 23 1 1 1
- 20 22 0 0 3
- 19 20 2 2 2
- 18 19 4 1 4
- 17 18 1 1 1
- 16 17 1 1 1
-H004 m009 c002 (1) 16 0 0 0
- 15 16 3 3 3
-H008 m005 c011 (4) 15 1 1 1
-H014 m003 c002 (10) 15 1 1 1
-H012 m002 c004 (13) 15 0 0 0
-H013 m010 c004 (11) 16 1 1 1
-H007 m028 c015 (12) 16 1 1 1
-H005 m010 c004 (3) 17 1 1 1
-H011 m011 c002 (5) 18 0 0 0
-H002 m003 c006 (6) 19 0 0 3
-H003 m018 c004 (9) 20 3 0 3
-H006 m001 c003 (2) 22 1 1 1
- 21 22 1 1 1
-H010 m002 c013 (7) 21 1 1 1
-H009 m003 c006 (8) 21 1 1 1
-H000 ancetre (14) 23 0 0 0
--------------------------------------------------------------------------
-Sum 24
-
-Tree length = 24
-Consistency index (CI) = 0.5833
-Homoplasy index (HI) = 0.4167
-CI excluding uninformative characters = 0.5455
-HI excluding uninformative characters = 0.4545
-Retention index (RI) = 0.7872
-Rescaled consistency index (RC) = 0.4592
-
- /-------------- H004 m009 c002
- |
- | /------- H008 m005 c011
- | |
- +-----15------- H014 m003 c002
- /-----16 |
- | | \------- H012 m002 c004
- | |
- | +-------------- H013 m010 c004
- /-----17 |
- | | \-------------- H007 m028 c015
- | |
- /-----18 \--------------------- H005 m010 c004
- | |
- /-----19 \---------------------------- H011 m011 c002
- | |
- /-----20 \----------------------------------- H002 m003 c006
- | |
- | \------------------------------------------ H003 m018 c004
- |
- /-----22------------------------------------------------- H006 m001 c003
- | |
- | | /------- H010 m002 c013
-------23 \----------------------------------------21
- | \------- H009 m003 c006
- |
- \-------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_23 --> node_22 13 1 1.000 1 ==> 2
- node_20 --> node_19 6 1 1.000 2 ==> 1
- 7 1 1.000 2 ==> 1
- node_19 --> node_18 1 1 0.333 2 --> 1
- 2 1 0.333 2 --> 1
- 8 1 1.000 2 ==> 1
- 14 1 0.333 0 --> 1
- node_18 --> node_17 10 1 1.000 2 ==> 1
- node_17 --> node_16 9 1 1.000 2 ==> 1
- node_16 --> node_15 1 1 0.333 1 ==> 2
- 2 1 0.333 1 ==> 2
- 14 1 0.333 1 ==> 0
- node_15 --> H008 m005 c011 12 1 0.333 2 ==> 1
- node_15 --> H014 m003 c002 11 1 0.333 2 ==> 1
- node_16 --> H013 m010 c004 12 1 0.333 2 ==> 1
- node_16 --> H007 m028 c015 11 1 0.333 2 ==> 1
- node_17 --> H005 m010 c004 11 1 0.333 2 ==> 1
- node_20 --> H003 m018 c004 1 1 0.333 2 --> 1
- 2 1 0.333 2 --> 1
- 14 1 0.333 0 --> 1
- node_22 --> H006 m001 c003 5 1 1.000 2 ==> 1
- node_22 --> node_21 3 1 1.000 2 ==> 1
- node_21 --> H010 m002 c013 4 1 1.000 2 ==> 1
- node_21 --> H009 m003 c006 12 1 0.333 2 ==> 1
-
-Tree number 3:
-
-Branch lengths and linkages for tree #3
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 22 root 0 0 0
- 21 22 1 1 1
- 19 21 2 2 2
- 18 19 3 3 3
- 17 18 3 3 3
-H004 m009 c002 (1) 17 0 0 0
- 16 17 0 0 1
- 15 16 1 1 1
-H005 m010 c004 (3) 15 1 0 1
-H011 m011 c002 (5) 15 1 1 2
-H007 m028 c015 (12) 16 1 0 1
-H013 m010 c004 (11) 17 1 1 1
-H008 m005 c011 (4) 18 1 1 1
-H014 m003 c002 (10) 18 1 1 1
-H012 m002 c004 (13) 18 0 0 0
-H002 m003 c006 (6) 19 0 0 0
-H006 m001 c003 (2) 21 1 1 1
- 20 21 1 1 1
-H010 m002 c013 (7) 20 1 1 1
-H009 m003 c006 (8) 20 1 1 1
-H003 m018 c004 (9) 21 3 3 3
-H000 ancetre (14) 22 0 0 0
--------------------------------------------------------------------------
-Sum 23
-
-Tree length = 23
-Consistency index (CI) = 0.6087
-Homoplasy index (HI) = 0.3913
-CI excluding uninformative characters = 0.5714
-HI excluding uninformative characters = 0.4286
-Retention index (RI) = 0.8085
-Rescaled consistency index (RC) = 0.4921
-
- /------------------------ H004 m009 c002
- |
- | /-------- H005 m010 c004
- | /------15
- /------17 | \-------- H011 m011 c002
- | +------16
- | | \---------------- H007 m028 c015
- | |
- | \------------------------ H013 m010 c004
- /-----18
- | +-------------------------------- H008 m005 c011
- | |
- | +-------------------------------- H014 m003 c002
- /------19 |
- | | \-------------------------------- H012 m002 c004
- | |
- | \--------------------------------------- H002 m003 c006
- |
- +----------------------------------------------- H006 m001 c003
- /------21
- | | /-------- H010 m002 c013
- | +-------------------------------------20
- | | \-------- H009 m003 c006
--------22 |
- | \----------------------------------------------- H003 m018 c004
- |
- \------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_22 --> node_21 13 1 1.000 1 ==> 2
- node_21 --> node_19 6 1 1.000 2 ==> 1
- 7 1 1.000 2 ==> 1
- node_19 --> node_18 8 1 1.000 2 ==> 1
- 9 1 0.500 2 ==> 1
- 10 1 0.500 2 ==> 1
- node_18 --> node_17 1 1 0.500 2 ==> 1
- 2 1 0.500 2 ==> 1
- 14 1 0.500 0 ==> 1
- node_16 --> node_15 9 1 0.500 1 ==> 2
- node_15 --> H005 m010 c004 11 1 0.333 2 --> 1
- node_15 --> H011 m011 c002 10 1 0.500 1 ==> 2
- node_16 --> H007 m028 c015 11 1 0.333 2 --> 1
- node_17 --> H013 m010 c004 12 1 0.333 2 ==> 1
- node_18 --> H008 m005 c011 12 1 0.333 2 ==> 1
- node_18 --> H014 m003 c002 11 1 0.333 2 ==> 1
- node_21 --> H006 m001 c003 5 1 1.000 2 ==> 1
- node_21 --> node_20 3 1 1.000 2 ==> 1
- node_20 --> H010 m002 c013 4 1 1.000 2 ==> 1
- node_20 --> H009 m003 c006 12 1 0.333 2 ==> 1
- node_21 --> H003 m018 c004 1 1 0.500 2 ==> 1
- 2 1 0.500 2 ==> 1
- 14 1 0.500 0 ==> 1
-
-Tree number 4:
-
-Branch lengths and linkages for tree #4
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 23 root 0 0 0
- 22 23 1 1 1
- 20 22 2 2 2
- 19 20 3 3 3
- 18 19 0 0 2
- 17 18 3 2 3
- 15 17 0 0 1
-H004 m009 c002 (1) 15 0 0 0
-H013 m010 c004 (11) 15 1 1 1
- 16 17 1 1 1
-H005 m010 c004 (3) 16 1 0 1
-H011 m011 c002 (5) 16 1 1 2
-H007 m028 c015 (12) 17 1 0 1
-H014 m003 c002 (10) 18 1 0 1
-H008 m005 c011 (4) 19 1 1 1
-H012 m002 c004 (13) 19 0 0 0
-H002 m003 c006 (6) 20 0 0 0
-H006 m001 c003 (2) 22 1 1 1
- 21 22 1 1 1
-H010 m002 c013 (7) 21 1 1 1
-H009 m003 c006 (8) 21 1 1 1
-H003 m018 c004 (9) 22 3 3 3
-H000 ancetre (14) 23 0 0 0
--------------------------------------------------------------------------
-Sum 23
-
-Tree length = 23
-Consistency index (CI) = 0.6087
-Homoplasy index (HI) = 0.3913
-CI excluding uninformative characters = 0.5714
-HI excluding uninformative characters = 0.4286
-Retention index (RI) = 0.8085
-Rescaled consistency index (RC) = 0.4921
-
- /-------- H004 m009 c002
- /------15
- | \-------- H013 m010 c004
- |
- | /-------- H005 m010 c004
- /------17------16
- | | \-------- H011 m011 c002
- | |
- /------18 \---------------- H007 m028 c015
- | |
- | \------------------------ H014 m003 c002
- /-----19
- | +-------------------------------- H008 m005 c011
- | |
- /------20 \-------------------------------- H012 m002 c004
- | |
- | \--------------------------------------- H002 m003 c006
- |
- +----------------------------------------------- H006 m001 c003
- /------22
- | | /-------- H010 m002 c013
- | +-------------------------------------21
- | | \-------- H009 m003 c006
--------23 |
- | \----------------------------------------------- H003 m018 c004
- |
- \------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_23 --> node_22 13 1 1.000 1 ==> 2
- node_22 --> node_20 6 1 1.000 2 ==> 1
- 7 1 1.000 2 ==> 1
- node_20 --> node_19 8 1 1.000 2 ==> 1
- 9 1 0.500 2 ==> 1
- 10 1 0.500 2 ==> 1
- node_18 --> node_17 1 1 0.500 2 ==> 1
- 2 1 0.500 2 ==> 1
- 14 1 0.500 0 --> 1
- node_15 --> H013 m010 c004 12 1 0.333 2 ==> 1
- node_17 --> node_16 9 1 0.500 1 ==> 2
- node_16 --> H005 m010 c004 11 1 0.333 2 --> 1
- node_16 --> H011 m011 c002 10 1 0.500 1 ==> 2
- node_17 --> H007 m028 c015 11 1 0.333 2 --> 1
- node_18 --> H014 m003 c002 11 1 0.333 2 --> 1
- node_19 --> H008 m005 c011 12 1 0.333 2 ==> 1
- node_22 --> H006 m001 c003 5 1 1.000 2 ==> 1
- node_22 --> node_21 3 1 1.000 2 ==> 1
- node_21 --> H010 m002 c013 4 1 1.000 2 ==> 1
- node_21 --> H009 m003 c006 12 1 0.333 2 ==> 1
- node_22 --> H003 m018 c004 1 1 0.500 2 ==> 1
- 2 1 0.500 2 ==> 1
- 14 1 0.500 0 ==> 1
-
-Tree number 5:
-
-Branch lengths and linkages for tree #5
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 24 root 0 0 0
- 23 24 1 1 1
- 21 23 2 2 2
- 20 21 3 3 3
- 19 20 0 0 2
- 18 19 3 2 3
- 15 18 0 0 1
-H004 m009 c002 (1) 15 0 0 0
-H013 m010 c004 (11) 15 1 1 1
- 17 18 0 0 1
- 16 17 1 1 1
-H005 m010 c004 (3) 16 1 0 1
-H011 m011 c002 (5) 16 1 1 2
-H007 m028 c015 (12) 17 1 0 1
-H014 m003 c002 (10) 19 1 0 1
-H008 m005 c011 (4) 20 1 1 1
-H012 m002 c004 (13) 20 0 0 0
-H002 m003 c006 (6) 21 0 0 0
-H006 m001 c003 (2) 23 1 1 1
- 22 23 1 1 1
-H010 m002 c013 (7) 22 1 1 1
-H009 m003 c006 (8) 22 1 1 1
-H003 m018 c004 (9) 23 3 3 3
-H000 ancetre (14) 24 0 0 0
--------------------------------------------------------------------------
-Sum 23
-
-Tree length = 23
-Consistency index (CI) = 0.6087
-Homoplasy index (HI) = 0.3913
-CI excluding uninformative characters = 0.5714
-HI excluding uninformative characters = 0.4286
-Retention index (RI) = 0.8085
-Rescaled consistency index (RC) = 0.4921
-
- /------- H004 m009 c002
- /------------15
- | \------- H013 m010 c004
- |
- /-----18 /------- H005 m010 c004
- | | /-----16
- | | | \------- H011 m011 c002
- /-----19 \-----17
- | | \-------------- H007 m028 c015
- | |
- | \---------------------------- H014 m003 c002
- /-----20
- | +----------------------------------- H008 m005 c011
- | |
- /-----21 \----------------------------------- H012 m002 c004
- | |
- | \------------------------------------------ H002 m003 c006
- |
- +------------------------------------------------- H006 m001 c003
- /-----23
- | | /------- H010 m002 c013
- | +----------------------------------------22
- | | \------- H009 m003 c006
-------24 |
- | \------------------------------------------------- H003 m018 c004
- |
- \-------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_24 --> node_23 13 1 1.000 1 ==> 2
- node_23 --> node_21 6 1 1.000 2 ==> 1
- 7 1 1.000 2 ==> 1
- node_21 --> node_20 8 1 1.000 2 ==> 1
- 9 1 0.500 2 ==> 1
- 10 1 0.500 2 ==> 1
- node_19 --> node_18 1 1 0.500 2 ==> 1
- 2 1 0.500 2 ==> 1
- 14 1 0.500 0 --> 1
- node_15 --> H013 m010 c004 12 1 0.333 2 ==> 1
- node_17 --> node_16 9 1 0.500 1 ==> 2
- node_16 --> H005 m010 c004 11 1 0.333 2 --> 1
- node_16 --> H011 m011 c002 10 1 0.500 1 ==> 2
- node_17 --> H007 m028 c015 11 1 0.333 2 --> 1
- node_19 --> H014 m003 c002 11 1 0.333 2 --> 1
- node_20 --> H008 m005 c011 12 1 0.333 2 ==> 1
- node_23 --> H006 m001 c003 5 1 1.000 2 ==> 1
- node_23 --> node_22 3 1 1.000 2 ==> 1
- node_22 --> H010 m002 c013 4 1 1.000 2 ==> 1
- node_22 --> H009 m003 c006 12 1 0.333 2 ==> 1
- node_23 --> H003 m018 c004 1 1 0.500 2 ==> 1
- 2 1 0.500 2 ==> 1
- 14 1 0.500 0 ==> 1
-
-Tree number 6:
-
-Branch lengths and linkages for tree #6
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 23 root 0 0 0
- 22 23 1 1 1
- 20 22 2 2 2
- 19 20 2 2 3
- 17 19 3 3 3
- 15 17 1 0 1
-H004 m009 c002 (1) 15 0 0 0
-H013 m010 c004 (11) 15 1 1 1
-H007 m028 c015 (12) 15 1 1 1
- 16 17 0 0 1
-H005 m010 c004 (3) 16 1 1 1
-H011 m011 c002 (5) 16 1 1 1
- 18 19 1 0 1
-H008 m005 c011 (4) 18 1 1 1
-H014 m003 c002 (10) 18 1 1 1
-H012 m002 c004 (13) 18 0 0 0
-H002 m003 c006 (6) 20 0 0 0
-H006 m001 c003 (2) 22 1 1 1
- 21 22 1 1 1
-H010 m002 c013 (7) 21 1 1 1
-H009 m003 c006 (8) 21 1 1 1
-H003 m018 c004 (9) 22 3 3 3
-H000 ancetre (14) 23 0 0 0
--------------------------------------------------------------------------
-Sum 23
-
-Tree length = 23
-Consistency index (CI) = 0.6087
-Homoplasy index (HI) = 0.3913
-CI excluding uninformative characters = 0.5714
-HI excluding uninformative characters = 0.4286
-Retention index (RI) = 0.8085
-Rescaled consistency index (RC) = 0.4921
-
- /--------- H004 m009 c002
- |
- /-------15--------- H013 m010 c004
- | |
- | \--------- H007 m028 c015
- /-------17
- | | /--------- H005 m010 c004
- | \-------16
- | \--------- H011 m011 c002
- /-------19
- | | /--------- H008 m005 c011
- | | |
- | \----------------18--------- H014 m003 c002
- /-------20 |
- | | \--------- H012 m002 c004
- | |
- | \------------------------------------ H002 m003 c006
- |
- +--------------------------------------------- H006 m001 c003
- /-------22
- | | /--------- H010 m002 c013
- | +----------------------------------21
- | | \--------- H009 m003 c006
---------23 |
- | \--------------------------------------------- H003 m018 c004
- |
- \------------------------------------------------------ H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_23 --> node_22 13 1 1.000 1 ==> 2
- node_22 --> node_20 6 1 1.000 2 ==> 1
- 7 1 1.000 2 ==> 1
- node_20 --> node_19 8 1 1.000 2 ==> 1
- 10 1 0.500 2 ==> 1
- node_19 --> node_17 1 1 0.500 2 ==> 1
- 2 1 0.500 2 ==> 1
- 14 1 0.500 0 ==> 1
- node_17 --> node_15 9 1 0.500 2 --> 1
- node_15 --> H013 m010 c004 12 1 0.333 2 ==> 1
- node_15 --> H007 m028 c015 11 1 0.333 2 ==> 1
- node_16 --> H005 m010 c004 11 1 0.333 2 ==> 1
- node_16 --> H011 m011 c002 10 1 0.500 1 ==> 2
- node_19 --> node_18 9 1 0.500 2 --> 1
- node_18 --> H008 m005 c011 12 1 0.333 2 ==> 1
- node_18 --> H014 m003 c002 11 1 0.333 2 ==> 1
- node_22 --> H006 m001 c003 5 1 1.000 2 ==> 1
- node_22 --> node_21 3 1 1.000 2 ==> 1
- node_21 --> H010 m002 c013 4 1 1.000 2 ==> 1
- node_21 --> H009 m003 c006 12 1 0.333 2 ==> 1
- node_22 --> H003 m018 c004 1 1 0.500 2 ==> 1
- 2 1 0.500 2 ==> 1
- 14 1 0.500 0 ==> 1
-
-Tree number 7:
-
-Branch lengths and linkages for tree #7
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 22 root 0 0 0
- 21 22 1 1 1
- 19 21 2 2 2
- 18 19 2 2 2
- 16 18 3 3 3
- 15 16 1 1 1
-H004 m009 c002 (1) 15 0 0 0
-H013 m010 c004 (11) 15 1 1 1
-H007 m028 c015 (12) 15 1 1 1
-H005 m010 c004 (3) 16 1 1 1
-H011 m011 c002 (5) 16 1 1 1
- 17 18 1 1 1
-H008 m005 c011 (4) 17 1 1 1
-H014 m003 c002 (10) 17 1 1 1
-H012 m002 c004 (13) 17 0 0 0
-H002 m003 c006 (6) 19 0 0 0
-H006 m001 c003 (2) 21 1 1 1
- 20 21 1 1 1
-H010 m002 c013 (7) 20 1 1 1
-H009 m003 c006 (8) 20 1 1 1
-H003 m018 c004 (9) 21 3 3 3
-H000 ancetre (14) 22 0 0 0
--------------------------------------------------------------------------
-Sum 23
-
-Tree length = 23
-Consistency index (CI) = 0.6087
-Homoplasy index (HI) = 0.3913
-CI excluding uninformative characters = 0.5714
-HI excluding uninformative characters = 0.4286
-Retention index (RI) = 0.8085
-Rescaled consistency index (RC) = 0.4921
-
- /--------- H004 m009 c002
- |
- /-------15--------- H013 m010 c004
- | |
- | \--------- H007 m028 c015
- /-------16
- | +------------------ H005 m010 c004
- | |
- | \------------------ H011 m011 c002
- /-------18
- | | /--------- H008 m005 c011
- | | |
- | \----------------17--------- H014 m003 c002
- /-------19 |
- | | \--------- H012 m002 c004
- | |
- | \------------------------------------ H002 m003 c006
- |
- +--------------------------------------------- H006 m001 c003
- /-------21
- | | /--------- H010 m002 c013
- | +----------------------------------20
- | | \--------- H009 m003 c006
---------22 |
- | \--------------------------------------------- H003 m018 c004
- |
- \------------------------------------------------------ H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_22 --> node_21 13 1 1.000 1 ==> 2
- node_21 --> node_19 6 1 1.000 2 ==> 1
- 7 1 1.000 2 ==> 1
- node_19 --> node_18 8 1 1.000 2 ==> 1
- 10 1 0.500 2 ==> 1
- node_18 --> node_16 1 1 0.500 2 ==> 1
- 2 1 0.500 2 ==> 1
- 14 1 0.500 0 ==> 1
- node_16 --> node_15 9 1 0.500 2 ==> 1
- node_15 --> H013 m010 c004 12 1 0.333 2 ==> 1
- node_15 --> H007 m028 c015 11 1 0.333 2 ==> 1
- node_16 --> H005 m010 c004 11 1 0.333 2 ==> 1
- node_16 --> H011 m011 c002 10 1 0.500 1 ==> 2
- node_18 --> node_17 9 1 0.500 2 ==> 1
- node_17 --> H008 m005 c011 12 1 0.333 2 ==> 1
- node_17 --> H014 m003 c002 11 1 0.333 2 ==> 1
- node_21 --> H006 m001 c003 5 1 1.000 2 ==> 1
- node_21 --> node_20 3 1 1.000 2 ==> 1
- node_20 --> H010 m002 c013 4 1 1.000 2 ==> 1
- node_20 --> H009 m003 c006 12 1 0.333 2 ==> 1
- node_21 --> H003 m018 c004 1 1 0.500 2 ==> 1
- 2 1 0.500 2 ==> 1
- 14 1 0.500 0 ==> 1
-
-Tree number 8:
-
-Branch lengths and linkages for tree #8
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 24 root 0 0 0
- 23 24 1 1 1
- 21 23 2 2 2
- 20 21 1 1 2
- 18 20 3 3 3
- 17 18 1 0 2
- 16 17 1 1 1
- 15 16 0 0 1
-H004 m009 c002 (1) 15 0 0 0
-H013 m010 c004 (11) 15 1 1 1
-H007 m028 c015 (12) 16 1 0 1
-H005 m010 c004 (3) 17 1 0 1
-H011 m011 c002 (5) 18 0 0 1
- 19 20 2 1 2
-H008 m005 c011 (4) 19 1 1 1
-H014 m003 c002 (10) 19 1 1 1
-H012 m002 c004 (13) 19 0 0 0
-H002 m003 c006 (6) 21 0 0 0
-H006 m001 c003 (2) 23 1 1 1
- 22 23 1 1 1
-H010 m002 c013 (7) 22 1 1 1
-H009 m003 c006 (8) 22 1 1 1
-H003 m018 c004 (9) 23 3 3 3
-H000 ancetre (14) 24 0 0 0
--------------------------------------------------------------------------
-Sum 23
-
-Tree length = 23
-Consistency index (CI) = 0.6087
-Homoplasy index (HI) = 0.3913
-CI excluding uninformative characters = 0.5714
-HI excluding uninformative characters = 0.4286
-Retention index (RI) = 0.8085
-Rescaled consistency index (RC) = 0.4921
-
- /------- H004 m009 c002
- /-----15
- | \------- H013 m010 c004
- /-----16
- | \-------------- H007 m028 c015
- /-----17
- | \--------------------- H005 m010 c004
- /-----18
- | \---------------------------- H011 m011 c002
- |
- /-----20 /------- H008 m005 c011
- | | |
- | \--------------------------19------- H014 m003 c002
- /-----21 |
- | | \------- H012 m002 c004
- | |
- | \------------------------------------------ H002 m003 c006
- |
- +------------------------------------------------- H006 m001 c003
- /-----23
- | | /------- H010 m002 c013
- | +----------------------------------------22
- | | \------- H009 m003 c006
-------24 |
- | \------------------------------------------------- H003 m018 c004
- |
- \-------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_24 --> node_23 13 1 1.000 1 ==> 2
- node_23 --> node_21 6 1 1.000 2 ==> 1
- 7 1 1.000 2 ==> 1
- node_21 --> node_20 8 1 1.000 2 ==> 1
- node_20 --> node_18 1 1 0.500 2 ==> 1
- 2 1 0.500 2 ==> 1
- 14 1 0.500 0 ==> 1
- node_18 --> node_17 10 1 0.500 2 --> 1
- node_17 --> node_16 9 1 0.500 2 ==> 1
- node_15 --> H013 m010 c004 12 1 0.333 2 ==> 1
- node_16 --> H007 m028 c015 11 1 0.333 2 --> 1
- node_17 --> H005 m010 c004 11 1 0.333 2 --> 1
- node_20 --> node_19 9 1 0.500 2 ==> 1
- 10 1 0.500 2 --> 1
- node_19 --> H008 m005 c011 12 1 0.333 2 ==> 1
- node_19 --> H014 m003 c002 11 1 0.333 2 ==> 1
- node_23 --> H006 m001 c003 5 1 1.000 2 ==> 1
- node_23 --> node_22 3 1 1.000 2 ==> 1
- node_22 --> H010 m002 c013 4 1 1.000 2 ==> 1
- node_22 --> H009 m003 c006 12 1 0.333 2 ==> 1
- node_23 --> H003 m018 c004 1 1 0.500 2 ==> 1
- 2 1 0.500 2 ==> 1
- 14 1 0.500 0 ==> 1
-
-Tree number 9:
-
-Branch lengths and linkages for tree #9
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 24 root 0 0 0
- 23 24 1 1 1
- 21 23 2 2 2
- 20 21 3 3 3
- 19 20 0 0 1
- 18 19 3 3 3
- 17 18 0 0 1
-H004 m009 c002 (1) 17 0 0 0
- 16 17 0 0 1
- 15 16 1 1 1
-H005 m010 c004 (3) 15 1 0 1
-H011 m011 c002 (5) 15 1 1 2
-H007 m028 c015 (12) 16 1 0 1
-H013 m010 c004 (11) 18 1 0 1
-H008 m005 c011 (4) 19 1 0 1
-H014 m003 c002 (10) 20 1 1 1
-H012 m002 c004 (13) 20 0 0 0
-H002 m003 c006 (6) 21 0 0 0
-H006 m001 c003 (2) 23 1 1 1
- 22 23 1 1 1
-H010 m002 c013 (7) 22 1 1 1
-H009 m003 c006 (8) 22 1 1 1
-H003 m018 c004 (9) 23 3 3 3
-H000 ancetre (14) 24 0 0 0
--------------------------------------------------------------------------
-Sum 23
-
-Tree length = 23
-Consistency index (CI) = 0.6087
-Homoplasy index (HI) = 0.3913
-CI excluding uninformative characters = 0.5714
-HI excluding uninformative characters = 0.4286
-Retention index (RI) = 0.8085
-Rescaled consistency index (RC) = 0.4921
-
- /------------------- H004 m009 c002
- |
- | /------ H005 m010 c004
- /----17 /-----15
- | | | \------ H011 m011 c002
- | \----16
- /----18 \------------- H007 m028 c015
- | |
- /-----19 \------------------------- H013 m010 c004
- | |
- | \------------------------------- H008 m005 c011
- /----20
- | +-------------------------------------- H014 m003 c002
- | |
- /----21 \-------------------------------------- H012 m002 c004
- | |
- | \-------------------------------------------- H002 m003 c006
- |
- +-------------------------------------------------- H006 m001 c003
- /-----23
- | | /------ H010 m002 c013
- | +------------------------------------------22
- | | \------ H009 m003 c006
------24 |
- | \-------------------------------------------------- H003 m018 c004
- |
- \--------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_24 --> node_23 13 1 1.000 1 ==> 2
- node_23 --> node_21 6 1 1.000 2 ==> 1
- 7 1 1.000 2 ==> 1
- node_21 --> node_20 8 1 1.000 2 ==> 1
- 9 1 0.500 2 ==> 1
- 10 1 0.500 2 ==> 1
- node_19 --> node_18 1 1 0.500 2 ==> 1
- 2 1 0.500 2 ==> 1
- 14 1 0.500 0 ==> 1
- node_16 --> node_15 9 1 0.500 1 ==> 2
- node_15 --> H005 m010 c004 11 1 0.333 2 --> 1
- node_15 --> H011 m011 c002 10 1 0.500 1 ==> 2
- node_16 --> H007 m028 c015 11 1 0.333 2 --> 1
- node_18 --> H013 m010 c004 12 1 0.333 2 --> 1
- node_19 --> H008 m005 c011 12 1 0.333 2 --> 1
- node_20 --> H014 m003 c002 11 1 0.333 2 ==> 1
- node_23 --> H006 m001 c003 5 1 1.000 2 ==> 1
- node_23 --> node_22 3 1 1.000 2 ==> 1
- node_22 --> H010 m002 c013 4 1 1.000 2 ==> 1
- node_22 --> H009 m003 c006 12 1 0.333 2 ==> 1
- node_23 --> H003 m018 c004 1 1 0.500 2 ==> 1
- 2 1 0.500 2 ==> 1
- 14 1 0.500 0 ==> 1
-
-Tree number 10:
-
-Branch lengths and linkages for tree #10
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 22 root 0 0 0
- 21 22 1 1 1
- 19 21 2 2 2
- 18 19 3 3 3
- 17 18 3 3 3
-H004 m009 c002 (1) 17 0 0 0
- 16 17 0 0 1
- 15 16 1 1 1
-H005 m010 c004 (3) 15 1 0 1
-H007 m028 c015 (12) 15 0 0 1
-H011 m011 c002 (5) 16 2 1 2
-H013 m010 c004 (11) 17 1 1 1
-H008 m005 c011 (4) 18 1 1 1
-H014 m003 c002 (10) 18 1 1 1
-H012 m002 c004 (13) 18 0 0 0
-H002 m003 c006 (6) 19 0 0 0
-H006 m001 c003 (2) 21 1 1 1
- 20 21 1 1 1
-H010 m002 c013 (7) 20 1 1 1
-H009 m003 c006 (8) 20 1 1 1
-H003 m018 c004 (9) 21 3 3 3
-H000 ancetre (14) 22 0 0 0
--------------------------------------------------------------------------
-Sum 23
-
-Tree length = 23
-Consistency index (CI) = 0.6087
-Homoplasy index (HI) = 0.3913
-CI excluding uninformative characters = 0.5714
-HI excluding uninformative characters = 0.4286
-Retention index (RI) = 0.8085
-Rescaled consistency index (RC) = 0.4921
-
- /------------------------ H004 m009 c002
- |
- | /-------- H005 m010 c004
- | /------15
- /------17 | \-------- H007 m028 c015
- | +------16
- | | \---------------- H011 m011 c002
- | |
- | \------------------------ H013 m010 c004
- /-----18
- | +-------------------------------- H008 m005 c011
- | |
- | +-------------------------------- H014 m003 c002
- /------19 |
- | | \-------------------------------- H012 m002 c004
- | |
- | \--------------------------------------- H002 m003 c006
- |
- +----------------------------------------------- H006 m001 c003
- /------21
- | | /-------- H010 m002 c013
- | +-------------------------------------20
- | | \-------- H009 m003 c006
--------22 |
- | \----------------------------------------------- H003 m018 c004
- |
- \------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_22 --> node_21 13 1 1.000 1 ==> 2
- node_21 --> node_19 6 1 1.000 2 ==> 1
- 7 1 1.000 2 ==> 1
- node_19 --> node_18 8 1 1.000 2 ==> 1
- 9 1 0.333 2 ==> 1
- 10 1 0.500 2 ==> 1
- node_18 --> node_17 1 1 0.500 2 ==> 1
- 2 1 0.500 2 ==> 1
- 14 1 0.500 0 ==> 1
- node_16 --> node_15 11 1 0.500 2 ==> 1
- node_15 --> H005 m010 c004 9 1 0.333 1 --> 2
- node_16 --> H011 m011 c002 9 1 0.333 1 --> 2
- 10 1 0.500 1 ==> 2
- node_17 --> H013 m010 c004 12 1 0.333 2 ==> 1
- node_18 --> H008 m005 c011 12 1 0.333 2 ==> 1
- node_18 --> H014 m003 c002 11 1 0.500 2 ==> 1
- node_21 --> H006 m001 c003 5 1 1.000 2 ==> 1
- node_21 --> node_20 3 1 1.000 2 ==> 1
- node_20 --> H010 m002 c013 4 1 1.000 2 ==> 1
- node_20 --> H009 m003 c006 12 1 0.333 2 ==> 1
- node_21 --> H003 m018 c004 1 1 0.500 2 ==> 1
- 2 1 0.500 2 ==> 1
- 14 1 0.500 0 ==> 1
-
-Tree number 11:
-
-Branch lengths and linkages for tree #11
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 24 root 0 0 0
- 23 24 1 1 1
- 21 23 2 2 2
- 20 21 3 3 3
- 19 20 0 0 2
- 18 19 2 2 3
- 17 18 1 0 2
- 15 17 0 0 1
-H004 m009 c002 (1) 15 0 0 0
-H013 m010 c004 (11) 15 1 1 1
- 16 17 1 1 1
-H005 m010 c004 (3) 16 1 0 1
-H011 m011 c002 (5) 16 1 1 2
-H007 m028 c015 (12) 18 1 0 1
-H014 m003 c002 (10) 19 1 0 1
-H008 m005 c011 (4) 20 1 1 1
-H012 m002 c004 (13) 20 0 0 0
-H002 m003 c006 (6) 21 0 0 0
-H006 m001 c003 (2) 23 1 1 1
- 22 23 1 1 1
-H010 m002 c013 (7) 22 1 1 1
-H009 m003 c006 (8) 22 1 1 1
-H003 m018 c004 (9) 23 3 3 3
-H000 ancetre (14) 24 0 0 0
--------------------------------------------------------------------------
-Sum 23
-
-Tree length = 23
-Consistency index (CI) = 0.6087
-Homoplasy index (HI) = 0.3913
-CI excluding uninformative characters = 0.5714
-HI excluding uninformative characters = 0.4286
-Retention index (RI) = 0.8085
-Rescaled consistency index (RC) = 0.4921
-
- /------- H004 m009 c002
- /-----15
- | \------- H013 m010 c004
- /-----17
- | | /------- H005 m010 c004
- | \-----16
- /-----18 \------- H011 m011 c002
- | |
- /-----19 \--------------------- H007 m028 c015
- | |
- | \---------------------------- H014 m003 c002
- /-----20
- | +----------------------------------- H008 m005 c011
- | |
- /-----21 \----------------------------------- H012 m002 c004
- | |
- | \------------------------------------------ H002 m003 c006
- |
- +------------------------------------------------- H006 m001 c003
- /-----23
- | | /------- H010 m002 c013
- | +----------------------------------------22
- | | \------- H009 m003 c006
-------24 |
- | \------------------------------------------------- H003 m018 c004
- |
- \-------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_24 --> node_23 13 1 1.000 1 ==> 2
- node_23 --> node_21 6 1 1.000 2 ==> 1
- 7 1 1.000 2 ==> 1
- node_21 --> node_20 8 1 1.000 2 ==> 1
- 9 1 0.500 2 ==> 1
- 10 1 0.500 2 ==> 1
- node_19 --> node_18 1 1 0.500 2 ==> 1
- 2 1 0.500 2 ==> 1
- node_18 --> node_17 14 1 0.500 0 --> 1
- node_15 --> H013 m010 c004 12 1 0.333 2 ==> 1
- node_17 --> node_16 9 1 0.500 1 ==> 2
- node_16 --> H005 m010 c004 11 1 0.333 2 --> 1
- node_16 --> H011 m011 c002 10 1 0.500 1 ==> 2
- node_18 --> H007 m028 c015 11 1 0.333 2 --> 1
- node_19 --> H014 m003 c002 11 1 0.333 2 --> 1
- node_20 --> H008 m005 c011 12 1 0.333 2 ==> 1
- node_23 --> H006 m001 c003 5 1 1.000 2 ==> 1
- node_23 --> node_22 3 1 1.000 2 ==> 1
- node_22 --> H010 m002 c013 4 1 1.000 2 ==> 1
- node_22 --> H009 m003 c006 12 1 0.333 2 ==> 1
- node_23 --> H003 m018 c004 1 1 0.500 2 ==> 1
- 2 1 0.500 2 ==> 1
- 14 1 0.500 0 ==> 1
-
-Tree number 12:
-
-Branch lengths and linkages for tree #12
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 21 root 0 0 0
- 20 21 1 1 1
- 18 20 2 2 2
- 17 18 3 3 3
- 16 17 3 3 3
-H004 m009 c002 (1) 16 0 0 0
- 15 16 1 1 1
-H005 m010 c004 (3) 15 1 1 1
-H007 m028 c015 (12) 15 0 0 0
-H011 m011 c002 (5) 16 2 2 2
-H013 m010 c004 (11) 16 1 1 1
-H008 m005 c011 (4) 17 1 1 1
-H014 m003 c002 (10) 17 1 1 1
-H012 m002 c004 (13) 17 0 0 0
-H002 m003 c006 (6) 18 0 0 0
-H006 m001 c003 (2) 20 1 1 1
- 19 20 1 1 1
-H010 m002 c013 (7) 19 1 1 1
-H009 m003 c006 (8) 19 1 1 1
-H003 m018 c004 (9) 20 3 3 3
-H000 ancetre (14) 21 0 0 0
--------------------------------------------------------------------------
-Sum 23
-
-Tree length = 23
-Consistency index (CI) = 0.6087
-Homoplasy index (HI) = 0.3913
-CI excluding uninformative characters = 0.5714
-HI excluding uninformative characters = 0.4286
-Retention index (RI) = 0.8085
-Rescaled consistency index (RC) = 0.4921
-
- /------------------ H004 m009 c002
- |
- | /--------- H005 m010 c004
- +-------15
- /-------16 \--------- H007 m028 c015
- | |
- | +------------------ H011 m011 c002
- | |
- | \------------------ H013 m010 c004
- /-------17
- | +--------------------------- H008 m005 c011
- | |
- | +--------------------------- H014 m003 c002
- /-------18 |
- | | \--------------------------- H012 m002 c004
- | |
- | \------------------------------------ H002 m003 c006
- |
- +--------------------------------------------- H006 m001 c003
- /-------20
- | | /--------- H010 m002 c013
- | +----------------------------------19
- | | \--------- H009 m003 c006
---------21 |
- | \--------------------------------------------- H003 m018 c004
- |
- \------------------------------------------------------ H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_21 --> node_20 13 1 1.000 1 ==> 2
- node_20 --> node_18 6 1 1.000 2 ==> 1
- 7 1 1.000 2 ==> 1
- node_18 --> node_17 8 1 1.000 2 ==> 1
- 9 1 0.333 2 ==> 1
- 10 1 0.500 2 ==> 1
- node_17 --> node_16 1 1 0.500 2 ==> 1
- 2 1 0.500 2 ==> 1
- 14 1 0.500 0 ==> 1
- node_16 --> node_15 11 1 0.500 2 ==> 1
- node_15 --> H005 m010 c004 9 1 0.333 1 ==> 2
- node_16 --> H011 m011 c002 9 1 0.333 1 ==> 2
- 10 1 0.500 1 ==> 2
- node_16 --> H013 m010 c004 12 1 0.333 2 ==> 1
- node_17 --> H008 m005 c011 12 1 0.333 2 ==> 1
- node_17 --> H014 m003 c002 11 1 0.500 2 ==> 1
- node_20 --> H006 m001 c003 5 1 1.000 2 ==> 1
- node_20 --> node_19 3 1 1.000 2 ==> 1
- node_19 --> H010 m002 c013 4 1 1.000 2 ==> 1
- node_19 --> H009 m003 c006 12 1 0.333 2 ==> 1
- node_20 --> H003 m018 c004 1 1 0.500 2 ==> 1
- 2 1 0.500 2 ==> 1
- 14 1 0.500 0 ==> 1
-
-Tree number 13:
-
-Branch lengths and linkages for tree #13
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 23 root 0 0 0
- 22 23 1 1 1
- 20 22 0 0 2
- 19 20 3 3 3
- 18 19 3 1 3
- 17 18 1 1 1
- 16 17 1 1 1
-H004 m009 c002 (1) 16 0 0 0
- 15 16 3 3 3
-H008 m005 c011 (4) 15 1 1 1
-H014 m003 c002 (10) 15 1 1 1
-H012 m002 c004 (13) 15 0 0 0
-H013 m010 c004 (11) 16 1 1 1
-H007 m028 c015 (12) 16 1 1 1
-H005 m010 c004 (3) 17 1 1 1
-H011 m011 c002 (5) 18 0 0 0
-H003 m018 c004 (9) 19 0 0 2
-H002 m003 c006 (6) 20 2 0 2
-H006 m001 c003 (2) 22 1 1 1
- 21 22 1 1 1
-H010 m002 c013 (7) 21 1 1 1
-H009 m003 c006 (8) 21 1 1 1
-H000 ancetre (14) 23 0 0 0
--------------------------------------------------------------------------
-Sum 23
-
-Tree length = 23
-Consistency index (CI) = 0.6087
-Homoplasy index (HI) = 0.3913
-CI excluding uninformative characters = 0.5714
-HI excluding uninformative characters = 0.4286
-Retention index (RI) = 0.8085
-Rescaled consistency index (RC) = 0.4921
-
- /-------------- H004 m009 c002
- |
- | /------- H008 m005 c011
- | |
- +-----15------- H014 m003 c002
- /-----16 |
- | | \------- H012 m002 c004
- | |
- | +-------------- H013 m010 c004
- /-----17 |
- | | \-------------- H007 m028 c015
- | |
- /-----18 \--------------------- H005 m010 c004
- | |
- /-----19 \---------------------------- H011 m011 c002
- | |
- /-----20 \----------------------------------- H003 m018 c004
- | |
- | \------------------------------------------ H002 m003 c006
- |
- /-----22------------------------------------------------- H006 m001 c003
- | |
- | | /------- H010 m002 c013
-------23 \----------------------------------------21
- | \------- H009 m003 c006
- |
- \-------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_23 --> node_22 13 1 1.000 1 ==> 2
- node_20 --> node_19 1 1 0.500 2 ==> 1
- 2 1 0.500 2 ==> 1
- 14 1 0.500 0 ==> 1
- node_19 --> node_18 6 1 0.500 2 --> 1
- 7 1 0.500 2 --> 1
- 8 1 1.000 2 ==> 1
- node_18 --> node_17 10 1 1.000 2 ==> 1
- node_17 --> node_16 9 1 1.000 2 ==> 1
- node_16 --> node_15 1 1 0.500 1 ==> 2
- 2 1 0.500 1 ==> 2
- 14 1 0.500 1 ==> 0
- node_15 --> H008 m005 c011 12 1 0.333 2 ==> 1
- node_15 --> H014 m003 c002 11 1 0.333 2 ==> 1
- node_16 --> H013 m010 c004 12 1 0.333 2 ==> 1
- node_16 --> H007 m028 c015 11 1 0.333 2 ==> 1
- node_17 --> H005 m010 c004 11 1 0.333 2 ==> 1
- node_20 --> H002 m003 c006 6 1 0.500 2 --> 1
- 7 1 0.500 2 --> 1
- node_22 --> H006 m001 c003 5 1 1.000 2 ==> 1
- node_22 --> node_21 3 1 1.000 2 ==> 1
- node_21 --> H010 m002 c013 4 1 1.000 2 ==> 1
- node_21 --> H009 m003 c006 12 1 0.333 2 ==> 1
-
-Tree number 14:
-
-Branch lengths and linkages for tree #14
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 22 root 0 0 0
- 21 22 1 1 1
- 19 21 3 3 3
- 18 19 3 3 3
- 17 18 1 1 1
- 16 17 1 1 1
-H004 m009 c002 (1) 16 0 0 0
- 15 16 3 3 3
-H008 m005 c011 (4) 15 1 1 1
-H014 m003 c002 (10) 15 1 1 1
-H012 m002 c004 (13) 15 0 0 0
-H013 m010 c004 (11) 16 1 1 1
-H007 m028 c015 (12) 16 1 1 1
-H005 m010 c004 (3) 17 1 1 1
-H011 m011 c002 (5) 18 0 0 0
-H003 m018 c004 (9) 19 0 0 0
-H006 m001 c003 (2) 21 1 1 1
-H002 m003 c006 (6) 21 2 2 2
- 20 21 1 1 1
-H010 m002 c013 (7) 20 1 1 1
-H009 m003 c006 (8) 20 1 1 1
-H000 ancetre (14) 22 0 0 0
--------------------------------------------------------------------------
-Sum 23
-
-Tree length = 23
-Consistency index (CI) = 0.6087
-Homoplasy index (HI) = 0.3913
-CI excluding uninformative characters = 0.5714
-HI excluding uninformative characters = 0.4286
-Retention index (RI) = 0.8085
-Rescaled consistency index (RC) = 0.4921
-
- /---------------- H004 m009 c002
- |
- | /-------- H008 m005 c011
- | |
- +------15-------- H014 m003 c002
- /------16 |
- | | \-------- H012 m002 c004
- | |
- | +---------------- H013 m010 c004
- /------17 |
- | | \---------------- H007 m028 c015
- | |
- /-----18 \------------------------ H005 m010 c004
- | |
- /------19 \-------------------------------- H011 m011 c002
- | |
- | \--------------------------------------- H003 m018 c004
- |
- +----------------------------------------------- H006 m001 c003
- /------21
- | +----------------------------------------------- H002 m003 c006
- | |
- | | /-------- H010 m002 c013
--------22 \-------------------------------------20
- | \-------- H009 m003 c006
- |
- \------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_22 --> node_21 13 1 1.000 1 ==> 2
- node_21 --> node_19 1 1 0.500 2 ==> 1
- 2 1 0.500 2 ==> 1
- 14 1 0.500 0 ==> 1
- node_19 --> node_18 6 1 0.500 2 ==> 1
- 7 1 0.500 2 ==> 1
- 8 1 1.000 2 ==> 1
- node_18 --> node_17 10 1 1.000 2 ==> 1
- node_17 --> node_16 9 1 1.000 2 ==> 1
- node_16 --> node_15 1 1 0.500 1 ==> 2
- 2 1 0.500 1 ==> 2
- 14 1 0.500 1 ==> 0
- node_15 --> H008 m005 c011 12 1 0.333 2 ==> 1
- node_15 --> H014 m003 c002 11 1 0.333 2 ==> 1
- node_16 --> H013 m010 c004 12 1 0.333 2 ==> 1
- node_16 --> H007 m028 c015 11 1 0.333 2 ==> 1
- node_17 --> H005 m010 c004 11 1 0.333 2 ==> 1
- node_21 --> H006 m001 c003 5 1 1.000 2 ==> 1
- node_21 --> H002 m003 c006 6 1 0.500 2 ==> 1
- 7 1 0.500 2 ==> 1
- node_21 --> node_20 3 1 1.000 2 ==> 1
- node_20 --> H010 m002 c013 4 1 1.000 2 ==> 1
- node_20 --> H009 m003 c006 12 1 0.333 2 ==> 1
-
-Tree number 15:
-
-Branch lengths and linkages for tree #15
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 22 root 0 0 0
- 21 22 1 1 1
- 19 21 2 2 2
- 18 19 4 4 4
- 17 18 1 1 1
- 16 17 1 1 1
-H004 m009 c002 (1) 16 0 0 0
- 15 16 3 3 3
-H008 m005 c011 (4) 15 1 1 1
-H014 m003 c002 (10) 15 1 1 1
-H012 m002 c004 (13) 15 0 0 0
-H013 m010 c004 (11) 16 1 1 1
-H007 m028 c015 (12) 16 1 1 1
-H005 m010 c004 (3) 17 1 1 1
-H011 m011 c002 (5) 18 0 0 0
-H002 m003 c006 (6) 19 0 0 0
-H006 m001 c003 (2) 21 1 1 1
- 20 21 1 1 1
-H010 m002 c013 (7) 20 1 1 1
-H009 m003 c006 (8) 20 1 1 1
-H003 m018 c004 (9) 21 3 3 3
-H000 ancetre (14) 22 0 0 0
--------------------------------------------------------------------------
-Sum 24
-
-Tree length = 24
-Consistency index (CI) = 0.5833
-Homoplasy index (HI) = 0.4167
-CI excluding uninformative characters = 0.5455
-HI excluding uninformative characters = 0.4545
-Retention index (RI) = 0.7872
-Rescaled consistency index (RC) = 0.4592
-
- /---------------- H004 m009 c002
- |
- | /-------- H008 m005 c011
- | |
- +------15-------- H014 m003 c002
- /------16 |
- | | \-------- H012 m002 c004
- | |
- | +---------------- H013 m010 c004
- /------17 |
- | | \---------------- H007 m028 c015
- | |
- /-----18 \------------------------ H005 m010 c004
- | |
- /------19 \-------------------------------- H011 m011 c002
- | |
- | \--------------------------------------- H002 m003 c006
- |
- +----------------------------------------------- H006 m001 c003
- /------21
- | | /-------- H010 m002 c013
- | +-------------------------------------20
- | | \-------- H009 m003 c006
--------22 |
- | \----------------------------------------------- H003 m018 c004
- |
- \------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_22 --> node_21 13 1 1.000 1 ==> 2
- node_21 --> node_19 6 1 1.000 2 ==> 1
- 7 1 1.000 2 ==> 1
- node_19 --> node_18 1 1 0.333 2 ==> 1
- 2 1 0.333 2 ==> 1
- 8 1 1.000 2 ==> 1
- 14 1 0.333 0 ==> 1
- node_18 --> node_17 10 1 1.000 2 ==> 1
- node_17 --> node_16 9 1 1.000 2 ==> 1
- node_16 --> node_15 1 1 0.333 1 ==> 2
- 2 1 0.333 1 ==> 2
- 14 1 0.333 1 ==> 0
- node_15 --> H008 m005 c011 12 1 0.333 2 ==> 1
- node_15 --> H014 m003 c002 11 1 0.333 2 ==> 1
- node_16 --> H013 m010 c004 12 1 0.333 2 ==> 1
- node_16 --> H007 m028 c015 11 1 0.333 2 ==> 1
- node_17 --> H005 m010 c004 11 1 0.333 2 ==> 1
- node_21 --> H006 m001 c003 5 1 1.000 2 ==> 1
- node_21 --> node_20 3 1 1.000 2 ==> 1
- node_20 --> H010 m002 c013 4 1 1.000 2 ==> 1
- node_20 --> H009 m003 c006 12 1 0.333 2 ==> 1
- node_21 --> H003 m018 c004 1 1 0.333 2 ==> 1
- 2 1 0.333 2 ==> 1
- 14 1 0.333 0 ==> 1
-
-Tree number 16:
-
-Branch lengths and linkages for tree #16
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 23 root 0 0 0
- 22 23 1 1 1
- 20 22 0 0 3
- 19 20 2 2 2
- 18 19 4 1 4
- 17 18 2 2 2
-H004 m009 c002 (1) 17 0 0 0
- 15 17 1 1 1
-H005 m010 c004 (3) 15 1 1 1
-H007 m028 c015 (12) 15 0 0 0
- 16 17 3 3 3
-H008 m005 c011 (4) 16 1 1 1
-H014 m003 c002 (10) 16 1 1 1
-H012 m002 c004 (13) 16 0 0 0
-H013 m010 c004 (11) 17 1 1 1
-H011 m011 c002 (5) 18 0 0 0
-H002 m003 c006 (6) 19 0 0 3
-H003 m018 c004 (9) 20 3 0 3
-H006 m001 c003 (2) 22 1 1 1
- 21 22 1 1 1
-H010 m002 c013 (7) 21 1 1 1
-H009 m003 c006 (8) 21 1 1 1
-H000 ancetre (14) 23 0 0 0
--------------------------------------------------------------------------
-Sum 24
-
-Tree length = 24
-Consistency index (CI) = 0.5833
-Homoplasy index (HI) = 0.4167
-CI excluding uninformative characters = 0.5455
-HI excluding uninformative characters = 0.4545
-Retention index (RI) = 0.7872
-Rescaled consistency index (RC) = 0.4592
-
- /---------------- H004 m009 c002
- |
- | /-------- H005 m010 c004
- +------15
- | \-------- H007 m028 c015
- |
- /------17 /-------- H008 m005 c011
- | | |
- | +------16-------- H014 m003 c002
- | | |
- /------18 | \-------- H012 m002 c004
- | | |
- | | \---------------- H013 m010 c004
- /-----19 |
- | | \------------------------ H011 m011 c002
- | |
- /------20 \-------------------------------- H002 m003 c006
- | |
- | \--------------------------------------- H003 m018 c004
- |
- /------22----------------------------------------------- H006 m001 c003
- | |
- | | /-------- H010 m002 c013
--------23 \-------------------------------------21
- | \-------- H009 m003 c006
- |
- \------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_23 --> node_22 13 1 1.000 1 ==> 2
- node_20 --> node_19 6 1 1.000 2 ==> 1
- 7 1 1.000 2 ==> 1
- node_19 --> node_18 1 1 0.333 2 --> 1
- 2 1 0.333 2 --> 1
- 8 1 1.000 2 ==> 1
- 14 1 0.333 0 --> 1
- node_18 --> node_17 9 1 0.500 2 ==> 1
- 10 1 1.000 2 ==> 1
- node_17 --> node_15 11 1 0.500 2 ==> 1
- node_15 --> H005 m010 c004 9 1 0.500 1 ==> 2
- node_17 --> node_16 1 1 0.333 1 ==> 2
- 2 1 0.333 1 ==> 2
- 14 1 0.333 1 ==> 0
- node_16 --> H008 m005 c011 12 1 0.333 2 ==> 1
- node_16 --> H014 m003 c002 11 1 0.500 2 ==> 1
- node_17 --> H013 m010 c004 12 1 0.333 2 ==> 1
- node_20 --> H003 m018 c004 1 1 0.333 2 --> 1
- 2 1 0.333 2 --> 1
- 14 1 0.333 0 --> 1
- node_22 --> H006 m001 c003 5 1 1.000 2 ==> 1
- node_22 --> node_21 3 1 1.000 2 ==> 1
- node_21 --> H010 m002 c013 4 1 1.000 2 ==> 1
- node_21 --> H009 m003 c006 12 1 0.333 2 ==> 1
-
-Tree number 17:
-
-Branch lengths and linkages for tree #17
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 25 root 0 0 0
- 24 25 1 1 1
- 22 24 0 0 3
- 21 22 2 2 2
- 20 21 4 1 4
- 19 20 1 1 1
- 18 19 1 1 1
-H004 m009 c002 (1) 18 0 0 0
- 17 18 0 0 2
- 16 17 2 2 3
- 15 16 1 0 2
-H008 m005 c011 (4) 15 1 1 1
-H012 m002 c004 (13) 15 0 0 0
-H014 m003 c002 (10) 16 1 0 1
-H007 m028 c015 (12) 17 1 0 1
-H013 m010 c004 (11) 18 1 1 1
-H005 m010 c004 (3) 19 1 1 1
-H011 m011 c002 (5) 20 0 0 0
-H002 m003 c006 (6) 21 0 0 3
-H003 m018 c004 (9) 22 3 0 3
-H006 m001 c003 (2) 24 1 1 1
- 23 24 1 1 1
-H010 m002 c013 (7) 23 1 1 1
-H009 m003 c006 (8) 23 1 1 1
-H000 ancetre (14) 25 0 0 0
--------------------------------------------------------------------------
-Sum 24
-
-Tree length = 24
-Consistency index (CI) = 0.5833
-Homoplasy index (HI) = 0.4167
-CI excluding uninformative characters = 0.5455
-HI excluding uninformative characters = 0.4545
-Retention index (RI) = 0.7872
-Rescaled consistency index (RC) = 0.4592
-
- /----------------------- H004 m009 c002
- |
- | /------ H008 m005 c011
- | /---15
- | | \------ H012 m002 c004
- /----18 /----16
- | | | \----------- H014 m003 c002
- | +----17
- | | \----------------- H007 m028 c015
- /---19 |
- | | \----------------------- H013 m010 c004
- | |
- /----20 \----------------------------- H005 m010 c004
- | |
- /----21 \---------------------------------- H011 m011 c002
- | |
- /----22 \---------------------------------------- H002 m003 c006
- | |
- | \---------------------------------------------- H003 m018 c004
- |
- /---24---------------------------------------------------- H006 m001 c003
- | |
- | | /------ H010 m002 c013
------25 \--------------------------------------------23
- | \------ H009 m003 c006
- |
- \--------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_25 --> node_24 13 1 1.000 1 ==> 2
- node_22 --> node_21 6 1 1.000 2 ==> 1
- 7 1 1.000 2 ==> 1
- node_21 --> node_20 1 1 0.333 2 --> 1
- 2 1 0.333 2 --> 1
- 8 1 1.000 2 ==> 1
- 14 1 0.333 0 --> 1
- node_20 --> node_19 10 1 1.000 2 ==> 1
- node_19 --> node_18 9 1 1.000 2 ==> 1
- node_17 --> node_16 1 1 0.333 1 ==> 2
- 2 1 0.333 1 ==> 2
- node_16 --> node_15 14 1 0.333 1 --> 0
- node_15 --> H008 m005 c011 12 1 0.333 2 ==> 1
- node_16 --> H014 m003 c002 11 1 0.333 2 --> 1
- node_17 --> H007 m028 c015 11 1 0.333 2 --> 1
- node_18 --> H013 m010 c004 12 1 0.333 2 ==> 1
- node_19 --> H005 m010 c004 11 1 0.333 2 ==> 1
- node_22 --> H003 m018 c004 1 1 0.333 2 --> 1
- 2 1 0.333 2 --> 1
- 14 1 0.333 0 --> 1
- node_24 --> H006 m001 c003 5 1 1.000 2 ==> 1
- node_24 --> node_23 3 1 1.000 2 ==> 1
- node_23 --> H010 m002 c013 4 1 1.000 2 ==> 1
- node_23 --> H009 m003 c006 12 1 0.333 2 ==> 1
-
-Tree number 18:
-
-Branch lengths and linkages for tree #18
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 23 root 0 0 0
- 22 23 1 1 1
- 20 22 2 2 2
- 19 20 1 1 2
- 17 19 3 3 3
- 16 17 1 0 1
- 15 16 1 1 1
-H004 m009 c002 (1) 15 0 0 0
-H013 m010 c004 (11) 15 1 1 1
-H007 m028 c015 (12) 15 1 1 1
-H005 m010 c004 (3) 16 1 1 1
-H011 m011 c002 (5) 17 0 0 1
- 18 19 2 1 2
-H008 m005 c011 (4) 18 1 1 1
-H014 m003 c002 (10) 18 1 1 1
-H012 m002 c004 (13) 18 0 0 0
-H002 m003 c006 (6) 20 0 0 0
-H006 m001 c003 (2) 22 1 1 1
- 21 22 1 1 1
-H010 m002 c013 (7) 21 1 1 1
-H009 m003 c006 (8) 21 1 1 1
-H003 m018 c004 (9) 22 3 3 3
-H000 ancetre (14) 23 0 0 0
--------------------------------------------------------------------------
-Sum 23
-
-Tree length = 23
-Consistency index (CI) = 0.6087
-Homoplasy index (HI) = 0.3913
-CI excluding uninformative characters = 0.5714
-HI excluding uninformative characters = 0.4286
-Retention index (RI) = 0.8085
-Rescaled consistency index (RC) = 0.4921
-
- /-------- H004 m009 c002
- |
- /------15-------- H013 m010 c004
- | |
- /------16 \-------- H007 m028 c015
- | |
- /------17 \---------------- H005 m010 c004
- | |
- | \------------------------ H011 m011 c002
- /-----19
- | | /-------- H008 m005 c011
- | | |
- | \----------------------18-------- H014 m003 c002
- /------20 |
- | | \-------- H012 m002 c004
- | |
- | \--------------------------------------- H002 m003 c006
- |
- +----------------------------------------------- H006 m001 c003
- /------22
- | | /-------- H010 m002 c013
- | +-------------------------------------21
- | | \-------- H009 m003 c006
--------23 |
- | \----------------------------------------------- H003 m018 c004
- |
- \------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_23 --> node_22 13 1 1.000 1 ==> 2
- node_22 --> node_20 6 1 1.000 2 ==> 1
- 7 1 1.000 2 ==> 1
- node_20 --> node_19 8 1 1.000 2 ==> 1
- node_19 --> node_17 1 1 0.500 2 ==> 1
- 2 1 0.500 2 ==> 1
- 14 1 0.500 0 ==> 1
- node_17 --> node_16 10 1 0.500 2 --> 1
- node_16 --> node_15 9 1 0.500 2 ==> 1
- node_15 --> H013 m010 c004 12 1 0.333 2 ==> 1
- node_15 --> H007 m028 c015 11 1 0.333 2 ==> 1
- node_16 --> H005 m010 c004 11 1 0.333 2 ==> 1
- node_19 --> node_18 9 1 0.500 2 ==> 1
- 10 1 0.500 2 --> 1
- node_18 --> H008 m005 c011 12 1 0.333 2 ==> 1
- node_18 --> H014 m003 c002 11 1 0.333 2 ==> 1
- node_22 --> H006 m001 c003 5 1 1.000 2 ==> 1
- node_22 --> node_21 3 1 1.000 2 ==> 1
- node_21 --> H010 m002 c013 4 1 1.000 2 ==> 1
- node_21 --> H009 m003 c006 12 1 0.333 2 ==> 1
- node_22 --> H003 m018 c004 1 1 0.500 2 ==> 1
- 2 1 0.500 2 ==> 1
- 14 1 0.500 0 ==> 1
-
-Tree number 19:
-
-Branch lengths and linkages for tree #19
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 25 root 0 0 0
- 24 25 1 1 1
- 22 24 0 0 3
- 21 22 2 2 2
- 20 21 4 1 4
- 19 20 1 1 1
- 18 19 1 1 1
-H004 m009 c002 (1) 18 0 0 0
- 17 18 0 0 1
- 16 17 3 3 3
-H008 m005 c011 (4) 16 1 0 1
- 15 16 0 0 1
-H014 m003 c002 (10) 15 1 1 1
-H012 m002 c004 (13) 15 0 0 0
-H013 m010 c004 (11) 17 1 0 1
-H007 m028 c015 (12) 18 1 1 1
-H005 m010 c004 (3) 19 1 1 1
-H011 m011 c002 (5) 20 0 0 0
-H002 m003 c006 (6) 21 0 0 3
-H003 m018 c004 (9) 22 3 0 3
-H006 m001 c003 (2) 24 1 1 1
- 23 24 1 1 1
-H010 m002 c013 (7) 23 1 1 1
-H009 m003 c006 (8) 23 1 1 1
-H000 ancetre (14) 25 0 0 0
--------------------------------------------------------------------------
-Sum 24
-
-Tree length = 24
-Consistency index (CI) = 0.5833
-Homoplasy index (HI) = 0.4167
-CI excluding uninformative characters = 0.5455
-HI excluding uninformative characters = 0.4545
-Retention index (RI) = 0.7872
-Rescaled consistency index (RC) = 0.4592
-
- /----------------------- H004 m009 c002
- |
- | /----------- H008 m005 c011
- | |
- | /----16 /------ H014 m003 c002
- /----18 | \---15
- | +----17 \------ H012 m002 c004
- | | |
- | | \----------------- H013 m010 c004
- /---19 |
- | | \----------------------- H007 m028 c015
- | |
- /----20 \----------------------------- H005 m010 c004
- | |
- /----21 \---------------------------------- H011 m011 c002
- | |
- /----22 \---------------------------------------- H002 m003 c006
- | |
- | \---------------------------------------------- H003 m018 c004
- |
- /---24---------------------------------------------------- H006 m001 c003
- | |
- | | /------ H010 m002 c013
------25 \--------------------------------------------23
- | \------ H009 m003 c006
- |
- \--------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_25 --> node_24 13 1 1.000 1 ==> 2
- node_22 --> node_21 6 1 1.000 2 ==> 1
- 7 1 1.000 2 ==> 1
- node_21 --> node_20 1 1 0.333 2 --> 1
- 2 1 0.333 2 --> 1
- 8 1 1.000 2 ==> 1
- 14 1 0.333 0 --> 1
- node_20 --> node_19 10 1 1.000 2 ==> 1
- node_19 --> node_18 9 1 1.000 2 ==> 1
- node_17 --> node_16 1 1 0.333 1 ==> 2
- 2 1 0.333 1 ==> 2
- 14 1 0.333 1 ==> 0
- node_16 --> H008 m005 c011 12 1 0.333 2 --> 1
- node_15 --> H014 m003 c002 11 1 0.333 2 ==> 1
- node_17 --> H013 m010 c004 12 1 0.333 2 --> 1
- node_18 --> H007 m028 c015 11 1 0.333 2 ==> 1
- node_19 --> H005 m010 c004 11 1 0.333 2 ==> 1
- node_22 --> H003 m018 c004 1 1 0.333 2 --> 1
- 2 1 0.333 2 --> 1
- 14 1 0.333 0 --> 1
- node_24 --> H006 m001 c003 5 1 1.000 2 ==> 1
- node_24 --> node_23 3 1 1.000 2 ==> 1
- node_23 --> H010 m002 c013 4 1 1.000 2 ==> 1
- node_23 --> H009 m003 c006 12 1 0.333 2 ==> 1
-
-Tree number 20:
-
-Branch lengths and linkages for tree #20
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 25 root 0 0 0
- 24 25 1 1 1
- 22 24 0 0 3
- 21 22 2 2 2
- 20 21 4 1 4
- 19 20 1 1 2
- 18 19 1 1 1
- 15 18 0 0 1
-H004 m009 c002 (1) 15 0 0 0
-H013 m010 c004 (11) 15 1 1 1
- 17 18 2 2 3
- 16 17 1 0 2
-H008 m005 c011 (4) 16 1 1 1
-H012 m002 c004 (13) 16 0 0 0
-H014 m003 c002 (10) 17 1 0 1
-H007 m028 c015 (12) 18 1 0 1
-H005 m010 c004 (3) 19 1 0 1
-H011 m011 c002 (5) 20 0 0 0
-H002 m003 c006 (6) 21 0 0 3
-H003 m018 c004 (9) 22 3 0 3
-H006 m001 c003 (2) 24 1 1 1
- 23 24 1 1 1
-H010 m002 c013 (7) 23 1 1 1
-H009 m003 c006 (8) 23 1 1 1
-H000 ancetre (14) 25 0 0 0
--------------------------------------------------------------------------
-Sum 24
-
-Tree length = 24
-Consistency index (CI) = 0.5833
-Homoplasy index (HI) = 0.4167
-CI excluding uninformative characters = 0.5455
-HI excluding uninformative characters = 0.4545
-Retention index (RI) = 0.7872
-Rescaled consistency index (RC) = 0.4592
-
- /------ H004 m009 c002
- /-----------15
- | \------ H013 m010 c004
- |
- | /------ H008 m005 c011
- | /-----16
- /----18 | \------ H012 m002 c004
- | +----17
- | | \------------- H014 m003 c002
- /----19 |
- | | \------------------- H007 m028 c015
- | |
- /-----20 \------------------------- H005 m010 c004
- | |
- /----21 \------------------------------- H011 m011 c002
- | |
- /----22 \-------------------------------------- H002 m003 c006
- | |
- | \-------------------------------------------- H003 m018 c004
- |
- /-----24-------------------------------------------------- H006 m001 c003
- | |
- | | /------ H010 m002 c013
------25 \------------------------------------------23
- | \------ H009 m003 c006
- |
- \--------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_25 --> node_24 13 1 1.000 1 ==> 2
- node_22 --> node_21 6 1 1.000 2 ==> 1
- 7 1 1.000 2 ==> 1
- node_21 --> node_20 1 1 0.333 2 --> 1
- 2 1 0.333 2 --> 1
- 8 1 1.000 2 ==> 1
- 14 1 0.333 0 --> 1
- node_20 --> node_19 10 1 1.000 2 ==> 1
- node_19 --> node_18 9 1 1.000 2 ==> 1
- node_15 --> H013 m010 c004 12 1 0.333 2 ==> 1
- node_18 --> node_17 1 1 0.333 1 ==> 2
- 2 1 0.333 1 ==> 2
- node_17 --> node_16 14 1 0.333 1 --> 0
- node_16 --> H008 m005 c011 12 1 0.333 2 ==> 1
- node_17 --> H014 m003 c002 11 1 0.333 2 --> 1
- node_18 --> H007 m028 c015 11 1 0.333 2 --> 1
- node_19 --> H005 m010 c004 11 1 0.333 2 --> 1
- node_22 --> H003 m018 c004 1 1 0.333 2 --> 1
- 2 1 0.333 2 --> 1
- 14 1 0.333 0 --> 1
- node_24 --> H006 m001 c003 5 1 1.000 2 ==> 1
- node_24 --> node_23 3 1 1.000 2 ==> 1
- node_23 --> H010 m002 c013 4 1 1.000 2 ==> 1
- node_23 --> H009 m003 c006 12 1 0.333 2 ==> 1
-
-Tree number 21:
-
-Branch lengths and linkages for tree #21
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 24 root 0 0 0
- 23 24 1 1 1
- 21 23 0 0 3
- 20 21 2 2 2
- 19 20 4 1 4
- 18 19 1 1 2
- 17 18 1 1 1
- 16 17 0 0 1
-H004 m009 c002 (1) 16 0 0 0
- 15 16 3 3 3
-H008 m005 c011 (4) 15 1 1 1
-H014 m003 c002 (10) 15 1 1 1
-H012 m002 c004 (13) 15 0 0 0
-H013 m010 c004 (11) 16 1 1 1
-H007 m028 c015 (12) 17 1 0 1
-H005 m010 c004 (3) 18 1 0 1
-H011 m011 c002 (5) 19 0 0 0
-H002 m003 c006 (6) 20 0 0 3
-H003 m018 c004 (9) 21 3 0 3
-H006 m001 c003 (2) 23 1 1 1
- 22 23 1 1 1
-H010 m002 c013 (7) 22 1 1 1
-H009 m003 c006 (8) 22 1 1 1
-H000 ancetre (14) 24 0 0 0
--------------------------------------------------------------------------
-Sum 24
-
-Tree length = 24
-Consistency index (CI) = 0.5833
-Homoplasy index (HI) = 0.4167
-CI excluding uninformative characters = 0.5455
-HI excluding uninformative characters = 0.4545
-Retention index (RI) = 0.7872
-Rescaled consistency index (RC) = 0.4592
-
- /------------- H004 m009 c002
- |
- | /------ H008 m005 c011
- | |
- /----16-----15------ H014 m003 c002
- | | |
- | | \------ H012 m002 c004
- /----17 |
- | | \------------- H013 m010 c004
- | |
- /----18 \------------------- H007 m028 c015
- | |
- /-----19 \------------------------- H005 m010 c004
- | |
- /----20 \------------------------------- H011 m011 c002
- | |
- /----21 \-------------------------------------- H002 m003 c006
- | |
- | \-------------------------------------------- H003 m018 c004
- |
- /-----23-------------------------------------------------- H006 m001 c003
- | |
- | | /------ H010 m002 c013
------24 \------------------------------------------22
- | \------ H009 m003 c006
- |
- \--------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_24 --> node_23 13 1 1.000 1 ==> 2
- node_21 --> node_20 6 1 1.000 2 ==> 1
- 7 1 1.000 2 ==> 1
- node_20 --> node_19 1 1 0.333 2 --> 1
- 2 1 0.333 2 --> 1
- 8 1 1.000 2 ==> 1
- 14 1 0.333 0 --> 1
- node_19 --> node_18 10 1 1.000 2 ==> 1
- node_18 --> node_17 9 1 1.000 2 ==> 1
- node_16 --> node_15 1 1 0.333 1 ==> 2
- 2 1 0.333 1 ==> 2
- 14 1 0.333 1 ==> 0
- node_15 --> H008 m005 c011 12 1 0.333 2 ==> 1
- node_15 --> H014 m003 c002 11 1 0.333 2 ==> 1
- node_16 --> H013 m010 c004 12 1 0.333 2 ==> 1
- node_17 --> H007 m028 c015 11 1 0.333 2 --> 1
- node_18 --> H005 m010 c004 11 1 0.333 2 --> 1
- node_21 --> H003 m018 c004 1 1 0.333 2 --> 1
- 2 1 0.333 2 --> 1
- 14 1 0.333 0 --> 1
- node_23 --> H006 m001 c003 5 1 1.000 2 ==> 1
- node_23 --> node_22 3 1 1.000 2 ==> 1
- node_22 --> H010 m002 c013 4 1 1.000 2 ==> 1
- node_22 --> H009 m003 c006 12 1 0.333 2 ==> 1
-
-Tree number 22:
-
-Branch lengths and linkages for tree #22
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 24 root 0 0 0
- 23 24 1 1 1
- 21 23 0 0 3
- 20 21 2 2 2
- 19 20 4 1 4
- 18 19 1 1 2
- 16 18 1 0 1
-H004 m009 c002 (1) 16 0 0 0
- 15 16 3 3 3
-H008 m005 c011 (4) 15 1 1 1
-H014 m003 c002 (10) 15 1 1 1
-H012 m002 c004 (13) 15 0 0 0
-H013 m010 c004 (11) 16 1 1 1
- 17 18 1 1 1
-H005 m010 c004 (3) 17 0 0 1
-H007 m028 c015 (12) 17 1 0 1
-H011 m011 c002 (5) 19 0 0 0
-H002 m003 c006 (6) 20 0 0 3
-H003 m018 c004 (9) 21 3 0 3
-H006 m001 c003 (2) 23 1 1 1
- 22 23 1 1 1
-H010 m002 c013 (7) 22 1 1 1
-H009 m003 c006 (8) 22 1 1 1
-H000 ancetre (14) 24 0 0 0
--------------------------------------------------------------------------
-Sum 24
-
-Tree length = 24
-Consistency index (CI) = 0.5833
-Homoplasy index (HI) = 0.4167
-CI excluding uninformative characters = 0.5455
-HI excluding uninformative characters = 0.4545
-Retention index (RI) = 0.7872
-Rescaled consistency index (RC) = 0.4592
-
- /-------------- H004 m009 c002
- |
- | /------- H008 m005 c011
- | |
- /-----16-----15------- H014 m003 c002
- | | |
- | | \------- H012 m002 c004
- | |
- /-----18 \-------------- H013 m010 c004
- | |
- | | /------- H005 m010 c004
- /-----19 \------------17
- | | \------- H007 m028 c015
- | |
- /-----20 \---------------------------- H011 m011 c002
- | |
- /-----21 \----------------------------------- H002 m003 c006
- | |
- | \------------------------------------------ H003 m018 c004
- |
- /-----23------------------------------------------------- H006 m001 c003
- | |
- | | /------- H010 m002 c013
-------24 \----------------------------------------22
- | \------- H009 m003 c006
- |
- \-------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_24 --> node_23 13 1 1.000 1 ==> 2
- node_21 --> node_20 6 1 1.000 2 ==> 1
- 7 1 1.000 2 ==> 1
- node_20 --> node_19 1 1 0.333 2 --> 1
- 2 1 0.333 2 --> 1
- 8 1 1.000 2 ==> 1
- 14 1 0.333 0 --> 1
- node_19 --> node_18 10 1 1.000 2 ==> 1
- node_18 --> node_16 9 1 0.500 2 --> 1
- node_16 --> node_15 1 1 0.333 1 ==> 2
- 2 1 0.333 1 ==> 2
- 14 1 0.333 1 ==> 0
- node_15 --> H008 m005 c011 12 1 0.333 2 ==> 1
- node_15 --> H014 m003 c002 11 1 0.500 2 ==> 1
- node_16 --> H013 m010 c004 12 1 0.333 2 ==> 1
- node_18 --> node_17 11 1 0.500 2 ==> 1
- node_17 --> H007 m028 c015 9 1 0.500 2 --> 1
- node_21 --> H003 m018 c004 1 1 0.333 2 --> 1
- 2 1 0.333 2 --> 1
- 14 1 0.333 0 --> 1
- node_23 --> H006 m001 c003 5 1 1.000 2 ==> 1
- node_23 --> node_22 3 1 1.000 2 ==> 1
- node_22 --> H010 m002 c013 4 1 1.000 2 ==> 1
- node_22 --> H009 m003 c006 12 1 0.333 2 ==> 1
-
-Tree number 23:
-
-Branch lengths and linkages for tree #23
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 26 root 0 0 0
- 25 26 1 1 1
- 23 25 0 0 3
- 22 23 2 2 2
- 21 22 4 1 4
- 20 21 1 1 2
- 19 20 1 1 1
- 18 19 0 0 1
- 15 18 0 0 1
-H004 m009 c002 (1) 15 0 0 0
-H013 m010 c004 (11) 15 1 1 1
- 17 18 2 2 3
- 16 17 1 0 2
-H008 m005 c011 (4) 16 1 1 1
-H012 m002 c004 (13) 16 0 0 0
-H014 m003 c002 (10) 17 1 0 1
-H007 m028 c015 (12) 19 1 0 1
-H005 m010 c004 (3) 20 1 0 1
-H011 m011 c002 (5) 21 0 0 0
-H002 m003 c006 (6) 22 0 0 3
-H003 m018 c004 (9) 23 3 0 3
-H006 m001 c003 (2) 25 1 1 1
- 24 25 1 1 1
-H010 m002 c013 (7) 24 1 1 1
-H009 m003 c006 (8) 24 1 1 1
-H000 ancetre (14) 26 0 0 0
--------------------------------------------------------------------------
-Sum 24
-
-Tree length = 24
-Consistency index (CI) = 0.5833
-Homoplasy index (HI) = 0.4167
-CI excluding uninformative characters = 0.5455
-HI excluding uninformative characters = 0.4545
-Retention index (RI) = 0.7872
-Rescaled consistency index (RC) = 0.4592
-
- /------ H004 m009 c002
- /---------15
- | \------ H013 m010 c004
- |
- /----18 /------ H008 m005 c011
- | | /---16
- | | | \------ H012 m002 c004
- /----19 \----17
- | | \----------- H014 m003 c002
- | |
- /---20 \----------------------- H007 m028 c015
- | |
- /----21 \----------------------------- H005 m010 c004
- | |
- /----22 \---------------------------------- H011 m011 c002
- | |
- /----23 \---------------------------------------- H002 m003 c006
- | |
- | \---------------------------------------------- H003 m018 c004
- |
- /---25---------------------------------------------------- H006 m001 c003
- | |
- | | /------ H010 m002 c013
------26 \--------------------------------------------24
- | \------ H009 m003 c006
- |
- \--------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_26 --> node_25 13 1 1.000 1 ==> 2
- node_23 --> node_22 6 1 1.000 2 ==> 1
- 7 1 1.000 2 ==> 1
- node_22 --> node_21 1 1 0.333 2 --> 1
- 2 1 0.333 2 --> 1
- 8 1 1.000 2 ==> 1
- 14 1 0.333 0 --> 1
- node_21 --> node_20 10 1 1.000 2 ==> 1
- node_20 --> node_19 9 1 1.000 2 ==> 1
- node_15 --> H013 m010 c004 12 1 0.333 2 ==> 1
- node_18 --> node_17 1 1 0.333 1 ==> 2
- 2 1 0.333 1 ==> 2
- node_17 --> node_16 14 1 0.333 1 --> 0
- node_16 --> H008 m005 c011 12 1 0.333 2 ==> 1
- node_17 --> H014 m003 c002 11 1 0.333 2 --> 1
- node_19 --> H007 m028 c015 11 1 0.333 2 --> 1
- node_20 --> H005 m010 c004 11 1 0.333 2 --> 1
- node_23 --> H003 m018 c004 1 1 0.333 2 --> 1
- 2 1 0.333 2 --> 1
- 14 1 0.333 0 --> 1
- node_25 --> H006 m001 c003 5 1 1.000 2 ==> 1
- node_25 --> node_24 3 1 1.000 2 ==> 1
- node_24 --> H010 m002 c013 4 1 1.000 2 ==> 1
- node_24 --> H009 m003 c006 12 1 0.333 2 ==> 1
-
-Tree number 24:
-
-Branch lengths and linkages for tree #24
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 23 root 0 0 0
- 22 23 1 1 1
- 20 22 2 2 2
- 19 20 4 4 4
- 18 19 1 1 2
- 17 18 1 1 1
- 16 17 0 0 1
-H004 m009 c002 (1) 16 0 0 0
- 15 16 3 3 3
-H008 m005 c011 (4) 15 1 1 1
-H014 m003 c002 (10) 15 1 1 1
-H012 m002 c004 (13) 15 0 0 0
-H013 m010 c004 (11) 16 1 1 1
-H007 m028 c015 (12) 17 1 0 1
-H005 m010 c004 (3) 18 1 0 1
-H011 m011 c002 (5) 19 0 0 0
-H002 m003 c006 (6) 20 0 0 0
-H006 m001 c003 (2) 22 1 1 1
- 21 22 1 1 1
-H010 m002 c013 (7) 21 1 1 1
-H009 m003 c006 (8) 21 1 1 1
-H003 m018 c004 (9) 22 3 3 3
-H000 ancetre (14) 23 0 0 0
--------------------------------------------------------------------------
-Sum 24
-
-Tree length = 24
-Consistency index (CI) = 0.5833
-Homoplasy index (HI) = 0.4167
-CI excluding uninformative characters = 0.5455
-HI excluding uninformative characters = 0.4545
-Retention index (RI) = 0.7872
-Rescaled consistency index (RC) = 0.4592
-
- /-------------- H004 m009 c002
- |
- | /------- H008 m005 c011
- | |
- /-----16-----15------- H014 m003 c002
- | | |
- | | \------- H012 m002 c004
- /-----17 |
- | | \-------------- H013 m010 c004
- | |
- /-----18 \--------------------- H007 m028 c015
- | |
- /-----19 \---------------------------- H005 m010 c004
- | |
- /-----20 \----------------------------------- H011 m011 c002
- | |
- | \------------------------------------------ H002 m003 c006
- |
- +------------------------------------------------- H006 m001 c003
- /-----22
- | | /------- H010 m002 c013
- | +----------------------------------------21
- | | \------- H009 m003 c006
-------23 |
- | \------------------------------------------------- H003 m018 c004
- |
- \-------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_23 --> node_22 13 1 1.000 1 ==> 2
- node_22 --> node_20 6 1 1.000 2 ==> 1
- 7 1 1.000 2 ==> 1
- node_20 --> node_19 1 1 0.333 2 ==> 1
- 2 1 0.333 2 ==> 1
- 8 1 1.000 2 ==> 1
- 14 1 0.333 0 ==> 1
- node_19 --> node_18 10 1 1.000 2 ==> 1
- node_18 --> node_17 9 1 1.000 2 ==> 1
- node_16 --> node_15 1 1 0.333 1 ==> 2
- 2 1 0.333 1 ==> 2
- 14 1 0.333 1 ==> 0
- node_15 --> H008 m005 c011 12 1 0.333 2 ==> 1
- node_15 --> H014 m003 c002 11 1 0.333 2 ==> 1
- node_16 --> H013 m010 c004 12 1 0.333 2 ==> 1
- node_17 --> H007 m028 c015 11 1 0.333 2 --> 1
- node_18 --> H005 m010 c004 11 1 0.333 2 --> 1
- node_22 --> H006 m001 c003 5 1 1.000 2 ==> 1
- node_22 --> node_21 3 1 1.000 2 ==> 1
- node_21 --> H010 m002 c013 4 1 1.000 2 ==> 1
- node_21 --> H009 m003 c006 12 1 0.333 2 ==> 1
- node_22 --> H003 m018 c004 1 1 0.333 2 ==> 1
- 2 1 0.333 2 ==> 1
- 14 1 0.333 0 ==> 1
-
-Tree number 25:
-
-Branch lengths and linkages for tree #25
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 24 root 0 0 0
- 23 24 1 1 1
- 21 23 2 2 2
- 20 21 2 2 3
- 18 20 3 3 3
- 15 18 1 0 1
-H004 m009 c002 (1) 15 0 0 0
-H013 m010 c004 (11) 15 1 1 1
- 17 18 0 0 1
- 16 17 1 1 1
-H005 m010 c004 (3) 16 0 0 1
-H007 m028 c015 (12) 16 1 0 1
-H011 m011 c002 (5) 17 1 1 2
- 19 20 1 0 1
-H008 m005 c011 (4) 19 1 1 1
-H014 m003 c002 (10) 19 1 1 1
-H012 m002 c004 (13) 19 0 0 0
-H002 m003 c006 (6) 21 0 0 0
-H006 m001 c003 (2) 23 1 1 1
- 22 23 1 1 1
-H010 m002 c013 (7) 22 1 1 1
-H009 m003 c006 (8) 22 1 1 1
-H003 m018 c004 (9) 23 3 3 3
-H000 ancetre (14) 24 0 0 0
--------------------------------------------------------------------------
-Sum 23
-
-Tree length = 23
-Consistency index (CI) = 0.6087
-Homoplasy index (HI) = 0.3913
-CI excluding uninformative characters = 0.5714
-HI excluding uninformative characters = 0.4286
-Retention index (RI) = 0.8085
-Rescaled consistency index (RC) = 0.4921
-
- /-------- H004 m009 c002
- /--------------15
- | \-------- H013 m010 c004
- |
- /------18 /-------- H005 m010 c004
- | | /------16
- | | | \-------- H007 m028 c015
- | \------17
- /-----20 \---------------- H011 m011 c002
- | |
- | | /-------- H008 m005 c011
- | | |
- /------21 \----------------------19-------- H014 m003 c002
- | | |
- | | \-------- H012 m002 c004
- | |
- | \--------------------------------------- H002 m003 c006
- |
- /------23----------------------------------------------- H006 m001 c003
- | |
- | | /-------- H010 m002 c013
- | +-------------------------------------22
--------24 | \-------- H009 m003 c006
- | |
- | \----------------------------------------------- H003 m018 c004
- |
- \------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_24 --> node_23 13 1 1.000 1 ==> 2
- node_23 --> node_21 6 1 1.000 2 ==> 1
- 7 1 1.000 2 ==> 1
- node_21 --> node_20 8 1 1.000 2 ==> 1
- 10 1 0.500 2 ==> 1
- node_20 --> node_18 1 1 0.500 2 ==> 1
- 2 1 0.500 2 ==> 1
- 14 1 0.500 0 ==> 1
- node_18 --> node_15 9 1 0.333 2 --> 1
- node_15 --> H013 m010 c004 12 1 0.333 2 ==> 1
- node_17 --> node_16 11 1 0.500 2 ==> 1
- node_16 --> H007 m028 c015 9 1 0.333 2 --> 1
- node_17 --> H011 m011 c002 10 1 0.500 1 ==> 2
- node_20 --> node_19 9 1 0.333 2 --> 1
- node_19 --> H008 m005 c011 12 1 0.333 2 ==> 1
- node_19 --> H014 m003 c002 11 1 0.500 2 ==> 1
- node_23 --> H006 m001 c003 5 1 1.000 2 ==> 1
- node_23 --> node_22 3 1 1.000 2 ==> 1
- node_22 --> H010 m002 c013 4 1 1.000 2 ==> 1
- node_22 --> H009 m003 c006 12 1 0.333 2 ==> 1
- node_23 --> H003 m018 c004 1 1 0.500 2 ==> 1
- 2 1 0.500 2 ==> 1
- 14 1 0.500 0 ==> 1
-
-Tree number 26:
-
-Branch lengths and linkages for tree #26
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 23 root 0 0 0
- 22 23 1 1 1
- 20 22 2 2 2
- 19 20 1 1 3
- 17 19 3 3 3
- 16 17 2 0 2
-H004 m009 c002 (1) 16 0 0 0
- 15 16 1 1 1
-H005 m010 c004 (3) 15 1 1 1
-H007 m028 c015 (12) 15 0 0 0
-H013 m010 c004 (11) 16 1 1 1
-H011 m011 c002 (5) 17 0 0 2
- 18 19 2 0 2
-H008 m005 c011 (4) 18 1 1 1
-H014 m003 c002 (10) 18 1 1 1
-H012 m002 c004 (13) 18 0 0 0
-H002 m003 c006 (6) 20 0 0 0
-H006 m001 c003 (2) 22 1 1 1
- 21 22 1 1 1
-H010 m002 c013 (7) 21 1 1 1
-H009 m003 c006 (8) 21 1 1 1
-H003 m018 c004 (9) 22 3 3 3
-H000 ancetre (14) 23 0 0 0
--------------------------------------------------------------------------
-Sum 23
-
-Tree length = 23
-Consistency index (CI) = 0.6087
-Homoplasy index (HI) = 0.3913
-CI excluding uninformative characters = 0.5714
-HI excluding uninformative characters = 0.4286
-Retention index (RI) = 0.8085
-Rescaled consistency index (RC) = 0.4921
-
- /---------------- H004 m009 c002
- |
- | /-------- H005 m010 c004
- /------16------15
- | | \-------- H007 m028 c015
- | |
- /------17 \---------------- H013 m010 c004
- | |
- | \------------------------ H011 m011 c002
- /-----19
- | | /-------- H008 m005 c011
- | | |
- | \----------------------18-------- H014 m003 c002
- /------20 |
- | | \-------- H012 m002 c004
- | |
- | \--------------------------------------- H002 m003 c006
- |
- +----------------------------------------------- H006 m001 c003
- /------22
- | | /-------- H010 m002 c013
- | +-------------------------------------21
- | | \-------- H009 m003 c006
--------23 |
- | \----------------------------------------------- H003 m018 c004
- |
- \------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_23 --> node_22 13 1 1.000 1 ==> 2
- node_22 --> node_20 6 1 1.000 2 ==> 1
- 7 1 1.000 2 ==> 1
- node_20 --> node_19 8 1 1.000 2 ==> 1
- node_19 --> node_17 1 1 0.500 2 ==> 1
- 2 1 0.500 2 ==> 1
- 14 1 0.500 0 ==> 1
- node_17 --> node_16 9 1 0.333 2 --> 1
- 10 1 0.500 2 --> 1
- node_16 --> node_15 11 1 0.500 2 ==> 1
- node_15 --> H005 m010 c004 9 1 0.333 1 ==> 2
- node_16 --> H013 m010 c004 12 1 0.333 2 ==> 1
- node_19 --> node_18 9 1 0.333 2 --> 1
- 10 1 0.500 2 --> 1
- node_18 --> H008 m005 c011 12 1 0.333 2 ==> 1
- node_18 --> H014 m003 c002 11 1 0.500 2 ==> 1
- node_22 --> H006 m001 c003 5 1 1.000 2 ==> 1
- node_22 --> node_21 3 1 1.000 2 ==> 1
- node_21 --> H010 m002 c013 4 1 1.000 2 ==> 1
- node_21 --> H009 m003 c006 12 1 0.333 2 ==> 1
- node_22 --> H003 m018 c004 1 1 0.500 2 ==> 1
- 2 1 0.500 2 ==> 1
- 14 1 0.500 0 ==> 1
-
-Tree number 27:
-
-Branch lengths and linkages for tree #27
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 23 root 0 0 0
- 22 23 1 1 1
- 20 22 2 2 2
- 19 20 1 1 4
- 18 19 2 2 2
- 16 18 3 0 3
-H004 m009 c002 (1) 16 0 0 0
- 15 16 1 1 1
-H005 m010 c004 (3) 15 1 1 1
-H007 m028 c015 (12) 15 0 0 0
-H013 m010 c004 (11) 16 1 1 1
- 17 18 0 0 3
-H008 m005 c011 (4) 17 1 1 1
-H014 m003 c002 (10) 17 1 1 1
-H012 m002 c004 (13) 17 0 0 0
-H011 m011 c002 (5) 19 3 0 3
-H002 m003 c006 (6) 20 0 0 0
-H006 m001 c003 (2) 22 1 1 1
- 21 22 1 1 1
-H010 m002 c013 (7) 21 1 1 1
-H009 m003 c006 (8) 21 1 1 1
-H003 m018 c004 (9) 22 3 3 3
-H000 ancetre (14) 23 0 0 0
--------------------------------------------------------------------------
-Sum 24
-
-Tree length = 24
-Consistency index (CI) = 0.5833
-Homoplasy index (HI) = 0.4167
-CI excluding uninformative characters = 0.5455
-HI excluding uninformative characters = 0.4545
-Retention index (RI) = 0.7872
-Rescaled consistency index (RC) = 0.4592
-
- /---------------- H004 m009 c002
- |
- | /-------- H005 m010 c004
- /------16------15
- | | \-------- H007 m028 c015
- | |
- | \---------------- H013 m010 c004
- /------18
- | | /-------- H008 m005 c011
- | | |
- | \--------------17-------- H014 m003 c002
- /-----19 |
- | | \-------- H012 m002 c004
- | |
- /------20 \-------------------------------- H011 m011 c002
- | |
- | \--------------------------------------- H002 m003 c006
- |
- +----------------------------------------------- H006 m001 c003
- /------22
- | | /-------- H010 m002 c013
- | +-------------------------------------21
- | | \-------- H009 m003 c006
--------23 |
- | \----------------------------------------------- H003 m018 c004
- |
- \------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_23 --> node_22 13 1 1.000 1 ==> 2
- node_22 --> node_20 6 1 1.000 2 ==> 1
- 7 1 1.000 2 ==> 1
- node_20 --> node_19 8 1 1.000 2 ==> 1
- node_19 --> node_18 9 1 0.500 2 ==> 1
- 10 1 1.000 2 ==> 1
- node_18 --> node_16 1 1 0.333 2 --> 1
- 2 1 0.333 2 --> 1
- 14 1 0.333 0 --> 1
- node_16 --> node_15 11 1 0.500 2 ==> 1
- node_15 --> H005 m010 c004 9 1 0.500 1 ==> 2
- node_16 --> H013 m010 c004 12 1 0.333 2 ==> 1
- node_17 --> H008 m005 c011 12 1 0.333 2 ==> 1
- node_17 --> H014 m003 c002 11 1 0.500 2 ==> 1
- node_19 --> H011 m011 c002 1 1 0.333 2 --> 1
- 2 1 0.333 2 --> 1
- 14 1 0.333 0 --> 1
- node_22 --> H006 m001 c003 5 1 1.000 2 ==> 1
- node_22 --> node_21 3 1 1.000 2 ==> 1
- node_21 --> H010 m002 c013 4 1 1.000 2 ==> 1
- node_21 --> H009 m003 c006 12 1 0.333 2 ==> 1
- node_22 --> H003 m018 c004 1 1 0.333 2 ==> 1
- 2 1 0.333 2 ==> 1
- 14 1 0.333 0 ==> 1
-
-Tree number 28:
-
-Branch lengths and linkages for tree #28
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 23 root 0 0 0
- 22 23 1 1 1
- 20 22 3 3 3
- 19 20 3 3 3
- 18 19 1 1 2
- 17 18 1 1 1
- 16 17 0 0 1
-H004 m009 c002 (1) 16 0 0 0
- 15 16 3 3 3
-H008 m005 c011 (4) 15 1 1 1
-H014 m003 c002 (10) 15 1 1 1
-H012 m002 c004 (13) 15 0 0 0
-H013 m010 c004 (11) 16 1 1 1
-H007 m028 c015 (12) 17 1 0 1
-H005 m010 c004 (3) 18 1 0 1
-H011 m011 c002 (5) 19 0 0 0
-H003 m018 c004 (9) 20 0 0 0
-H006 m001 c003 (2) 22 1 1 1
-H002 m003 c006 (6) 22 2 2 2
- 21 22 1 1 1
-H010 m002 c013 (7) 21 1 1 1
-H009 m003 c006 (8) 21 1 1 1
-H000 ancetre (14) 23 0 0 0
--------------------------------------------------------------------------
-Sum 23
-
-Tree length = 23
-Consistency index (CI) = 0.6087
-Homoplasy index (HI) = 0.3913
-CI excluding uninformative characters = 0.5714
-HI excluding uninformative characters = 0.4286
-Retention index (RI) = 0.8085
-Rescaled consistency index (RC) = 0.4921
-
- /-------------- H004 m009 c002
- |
- | /------- H008 m005 c011
- | |
- /-----16-----15------- H014 m003 c002
- | | |
- | | \------- H012 m002 c004
- /-----17 |
- | | \-------------- H013 m010 c004
- | |
- /-----18 \--------------------- H007 m028 c015
- | |
- /-----19 \---------------------------- H005 m010 c004
- | |
- /-----20 \----------------------------------- H011 m011 c002
- | |
- | \------------------------------------------ H003 m018 c004
- |
- +------------------------------------------------- H006 m001 c003
- /-----22
- | +------------------------------------------------- H002 m003 c006
- | |
- | | /------- H010 m002 c013
-------23 \----------------------------------------21
- | \------- H009 m003 c006
- |
- \-------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_23 --> node_22 13 1 1.000 1 ==> 2
- node_22 --> node_20 1 1 0.500 2 ==> 1
- 2 1 0.500 2 ==> 1
- 14 1 0.500 0 ==> 1
- node_20 --> node_19 6 1 0.500 2 ==> 1
- 7 1 0.500 2 ==> 1
- 8 1 1.000 2 ==> 1
- node_19 --> node_18 10 1 1.000 2 ==> 1
- node_18 --> node_17 9 1 1.000 2 ==> 1
- node_16 --> node_15 1 1 0.500 1 ==> 2
- 2 1 0.500 1 ==> 2
- 14 1 0.500 1 ==> 0
- node_15 --> H008 m005 c011 12 1 0.333 2 ==> 1
- node_15 --> H014 m003 c002 11 1 0.333 2 ==> 1
- node_16 --> H013 m010 c004 12 1 0.333 2 ==> 1
- node_17 --> H007 m028 c015 11 1 0.333 2 --> 1
- node_18 --> H005 m010 c004 11 1 0.333 2 --> 1
- node_22 --> H006 m001 c003 5 1 1.000 2 ==> 1
- node_22 --> H002 m003 c006 6 1 0.500 2 ==> 1
- 7 1 0.500 2 ==> 1
- node_22 --> node_21 3 1 1.000 2 ==> 1
- node_21 --> H010 m002 c013 4 1 1.000 2 ==> 1
- node_21 --> H009 m003 c006 12 1 0.333 2 ==> 1
-
-Tree number 29:
-
-Branch lengths and linkages for tree #29
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 24 root 0 0 0
- 23 24 1 1 1
- 21 23 2 2 2
- 20 21 3 3 3
- 19 20 1 1 2
- 18 19 2 2 3
- 17 18 1 0 2
- 16 17 1 1 1
- 15 16 0 0 1
-H004 m009 c002 (1) 15 0 0 0
-H013 m010 c004 (11) 15 1 1 1
-H011 m011 c002 (5) 16 2 1 2
-H005 m010 c004 (3) 17 1 0 1
-H007 m028 c015 (12) 18 0 0 0
-H014 m003 c002 (10) 19 0 0 0
-H008 m005 c011 (4) 20 1 1 1
-H012 m002 c004 (13) 20 0 0 0
-H002 m003 c006 (6) 21 0 0 0
-H006 m001 c003 (2) 23 1 1 1
- 22 23 1 1 1
-H010 m002 c013 (7) 22 1 1 1
-H009 m003 c006 (8) 22 1 1 1
-H003 m018 c004 (9) 23 3 3 3
-H000 ancetre (14) 24 0 0 0
--------------------------------------------------------------------------
-Sum 23
-
-Tree length = 23
-Consistency index (CI) = 0.6087
-Homoplasy index (HI) = 0.3913
-CI excluding uninformative characters = 0.5714
-HI excluding uninformative characters = 0.4286
-Retention index (RI) = 0.8085
-Rescaled consistency index (RC) = 0.4921
-
- /------ H004 m009 c002
- /-----15
- | \------ H013 m010 c004
- /----16
- | \------------- H011 m011 c002
- /----17
- | \------------------- H005 m010 c004
- /----18
- | \------------------------- H007 m028 c015
- /-----19
- | \------------------------------- H014 m003 c002
- |
- /----20-------------------------------------- H008 m005 c011
- | |
- /----21 \-------------------------------------- H012 m002 c004
- | |
- | \-------------------------------------------- H002 m003 c006
- |
- +-------------------------------------------------- H006 m001 c003
- /-----23
- | | /------ H010 m002 c013
- | +------------------------------------------22
- | | \------ H009 m003 c006
------24 |
- | \-------------------------------------------------- H003 m018 c004
- |
- \--------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_24 --> node_23 13 1 1.000 1 ==> 2
- node_23 --> node_21 6 1 1.000 2 ==> 1
- 7 1 1.000 2 ==> 1
- node_21 --> node_20 8 1 1.000 2 ==> 1
- 9 1 0.333 2 ==> 1
- 10 1 0.500 2 ==> 1
- node_20 --> node_19 11 1 0.500 2 ==> 1
- node_19 --> node_18 1 1 0.500 2 ==> 1
- 2 1 0.500 2 ==> 1
- node_18 --> node_17 14 1 0.500 0 --> 1
- node_17 --> node_16 11 1 0.500 1 ==> 2
- node_15 --> H013 m010 c004 12 1 0.333 2 ==> 1
- node_16 --> H011 m011 c002 9 1 0.333 1 --> 2
- 10 1 0.500 1 ==> 2
- node_17 --> H005 m010 c004 9 1 0.333 1 --> 2
- node_20 --> H008 m005 c011 12 1 0.333 2 ==> 1
- node_23 --> H006 m001 c003 5 1 1.000 2 ==> 1
- node_23 --> node_22 3 1 1.000 2 ==> 1
- node_22 --> H010 m002 c013 4 1 1.000 2 ==> 1
- node_22 --> H009 m003 c006 12 1 0.333 2 ==> 1
- node_23 --> H003 m018 c004 1 1 0.500 2 ==> 1
- 2 1 0.500 2 ==> 1
- 14 1 0.500 0 ==> 1
-
-Tree number 30:
-
-Branch lengths and linkages for tree #30
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 23 root 0 0 0
- 22 23 1 1 1
- 20 22 2 2 2
- 19 20 3 3 3
- 18 19 0 0 2
- 17 18 2 2 3
- 16 17 1 0 2
-H004 m009 c002 (1) 16 0 0 0
- 15 16 1 1 1
-H005 m010 c004 (3) 15 1 1 1
-H011 m011 c002 (5) 15 1 1 1
-H013 m010 c004 (11) 16 1 1 1
-H007 m028 c015 (12) 17 1 0 1
-H014 m003 c002 (10) 18 1 0 1
-H008 m005 c011 (4) 19 1 1 1
-H012 m002 c004 (13) 19 0 0 0
-H002 m003 c006 (6) 20 0 0 0
-H006 m001 c003 (2) 22 1 1 1
- 21 22 1 1 1
-H010 m002 c013 (7) 21 1 1 1
-H009 m003 c006 (8) 21 1 1 1
-H003 m018 c004 (9) 22 3 3 3
-H000 ancetre (14) 23 0 0 0
--------------------------------------------------------------------------
-Sum 23
-
-Tree length = 23
-Consistency index (CI) = 0.6087
-Homoplasy index (HI) = 0.3913
-CI excluding uninformative characters = 0.5714
-HI excluding uninformative characters = 0.4286
-Retention index (RI) = 0.8085
-Rescaled consistency index (RC) = 0.4921
-
- /-------------- H004 m009 c002
- |
- | /------- H005 m010 c004
- /-----16-----15
- | | \------- H011 m011 c002
- | |
- /-----17 \-------------- H013 m010 c004
- | |
- /-----18 \--------------------- H007 m028 c015
- | |
- | \---------------------------- H014 m003 c002
- /-----19
- | +----------------------------------- H008 m005 c011
- | |
- /-----20 \----------------------------------- H012 m002 c004
- | |
- | \------------------------------------------ H002 m003 c006
- |
- +------------------------------------------------- H006 m001 c003
- /-----22
- | | /------- H010 m002 c013
- | +----------------------------------------21
- | | \------- H009 m003 c006
-------23 |
- | \------------------------------------------------- H003 m018 c004
- |
- \-------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_23 --> node_22 13 1 1.000 1 ==> 2
- node_22 --> node_20 6 1 1.000 2 ==> 1
- 7 1 1.000 2 ==> 1
- node_20 --> node_19 8 1 1.000 2 ==> 1
- 9 1 0.500 2 ==> 1
- 10 1 0.500 2 ==> 1
- node_18 --> node_17 1 1 0.500 2 ==> 1
- 2 1 0.500 2 ==> 1
- node_17 --> node_16 14 1 0.500 0 --> 1
- node_16 --> node_15 9 1 0.500 1 ==> 2
- node_15 --> H005 m010 c004 11 1 0.333 2 ==> 1
- node_15 --> H011 m011 c002 10 1 0.500 1 ==> 2
- node_16 --> H013 m010 c004 12 1 0.333 2 ==> 1
- node_17 --> H007 m028 c015 11 1 0.333 2 --> 1
- node_18 --> H014 m003 c002 11 1 0.333 2 --> 1
- node_19 --> H008 m005 c011 12 1 0.333 2 ==> 1
- node_22 --> H006 m001 c003 5 1 1.000 2 ==> 1
- node_22 --> node_21 3 1 1.000 2 ==> 1
- node_21 --> H010 m002 c013 4 1 1.000 2 ==> 1
- node_21 --> H009 m003 c006 12 1 0.333 2 ==> 1
- node_22 --> H003 m018 c004 1 1 0.500 2 ==> 1
- 2 1 0.500 2 ==> 1
- 14 1 0.500 0 ==> 1
-
-Tree number 31:
-
-Branch lengths and linkages for tree #31
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 23 root 0 0 0
- 22 23 1 1 1
- 20 22 2 2 2
- 19 20 3 3 3
- 18 19 0 0 2
- 17 18 3 2 3
- 15 17 0 0 1
-H004 m009 c002 (1) 15 0 0 0
-H011 m011 c002 (5) 15 2 2 2
-H013 m010 c004 (11) 15 1 1 1
- 16 17 1 0 1
-H005 m010 c004 (3) 16 1 1 1
-H007 m028 c015 (12) 16 0 0 0
-H014 m003 c002 (10) 18 1 0 1
-H008 m005 c011 (4) 19 1 1 1
-H012 m002 c004 (13) 19 0 0 0
-H002 m003 c006 (6) 20 0 0 0
-H006 m001 c003 (2) 22 1 1 1
- 21 22 1 1 1
-H010 m002 c013 (7) 21 1 1 1
-H009 m003 c006 (8) 21 1 1 1
-H003 m018 c004 (9) 22 3 3 3
-H000 ancetre (14) 23 0 0 0
--------------------------------------------------------------------------
-Sum 23
-
-Tree length = 23
-Consistency index (CI) = 0.6087
-Homoplasy index (HI) = 0.3913
-CI excluding uninformative characters = 0.5714
-HI excluding uninformative characters = 0.4286
-Retention index (RI) = 0.8085
-Rescaled consistency index (RC) = 0.4921
-
- /-------- H004 m009 c002
- |
- /------15-------- H011 m011 c002
- | |
- | \-------- H013 m010 c004
- /------17
- | | /-------- H005 m010 c004
- | \------16
- /------18 \-------- H007 m028 c015
- | |
- | \------------------------ H014 m003 c002
- /-----19
- | +-------------------------------- H008 m005 c011
- | |
- /------20 \-------------------------------- H012 m002 c004
- | |
- | \--------------------------------------- H002 m003 c006
- |
- +----------------------------------------------- H006 m001 c003
- /------22
- | | /-------- H010 m002 c013
- | +-------------------------------------21
- | | \-------- H009 m003 c006
--------23 |
- | \----------------------------------------------- H003 m018 c004
- |
- \------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_23 --> node_22 13 1 1.000 1 ==> 2
- node_22 --> node_20 6 1 1.000 2 ==> 1
- 7 1 1.000 2 ==> 1
- node_20 --> node_19 8 1 1.000 2 ==> 1
- 9 1 0.333 2 ==> 1
- 10 1 0.500 2 ==> 1
- node_18 --> node_17 1 1 0.500 2 ==> 1
- 2 1 0.500 2 ==> 1
- 14 1 0.500 0 --> 1
- node_15 --> H011 m011 c002 9 1 0.333 1 ==> 2
- 10 1 0.500 1 ==> 2
- node_15 --> H013 m010 c004 12 1 0.333 2 ==> 1
- node_17 --> node_16 11 1 0.500 2 --> 1
- node_16 --> H005 m010 c004 9 1 0.333 1 ==> 2
- node_18 --> H014 m003 c002 11 1 0.500 2 --> 1
- node_19 --> H008 m005 c011 12 1 0.333 2 ==> 1
- node_22 --> H006 m001 c003 5 1 1.000 2 ==> 1
- node_22 --> node_21 3 1 1.000 2 ==> 1
- node_21 --> H010 m002 c013 4 1 1.000 2 ==> 1
- node_21 --> H009 m003 c006 12 1 0.333 2 ==> 1
- node_22 --> H003 m018 c004 1 1 0.500 2 ==> 1
- 2 1 0.500 2 ==> 1
- 14 1 0.500 0 ==> 1
-
-Tree number 32:
-
-Branch lengths and linkages for tree #32
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 24 root 0 0 0
- 23 24 1 1 1
- 21 23 2 2 2
- 20 21 1 1 1
- 19 20 2 2 2
- 18 19 0 0 2
- 17 18 3 2 3
- 15 17 0 0 1
-H004 m009 c002 (1) 15 0 0 0
-H013 m010 c004 (11) 15 1 1 1
- 16 17 1 0 1
-H005 m010 c004 (3) 16 1 1 1
-H007 m028 c015 (12) 16 0 0 0
-H014 m003 c002 (10) 18 1 0 1
-H008 m005 c011 (4) 19 1 1 1
-H012 m002 c004 (13) 19 0 0 0
-H011 m011 c002 (5) 20 3 3 3
-H002 m003 c006 (6) 21 0 0 0
-H006 m001 c003 (2) 23 1 1 1
- 22 23 1 1 1
-H010 m002 c013 (7) 22 1 1 1
-H009 m003 c006 (8) 22 1 1 1
-H003 m018 c004 (9) 23 3 3 3
-H000 ancetre (14) 24 0 0 0
--------------------------------------------------------------------------
-Sum 24
-
-Tree length = 24
-Consistency index (CI) = 0.5833
-Homoplasy index (HI) = 0.4167
-CI excluding uninformative characters = 0.5455
-HI excluding uninformative characters = 0.4545
-Retention index (RI) = 0.7872
-Rescaled consistency index (RC) = 0.4592
-
- /------- H004 m009 c002
- /-----15
- | \------- H013 m010 c004
- /-----17
- | | /------- H005 m010 c004
- | \-----16
- /-----18 \------- H007 m028 c015
- | |
- | \--------------------- H014 m003 c002
- /-----19
- | +---------------------------- H008 m005 c011
- | |
- /-----20 \---------------------------- H012 m002 c004
- | |
- /-----21 \----------------------------------- H011 m011 c002
- | |
- | \------------------------------------------ H002 m003 c006
- |
- +------------------------------------------------- H006 m001 c003
- /-----23
- | | /------- H010 m002 c013
- | +----------------------------------------22
- | | \------- H009 m003 c006
-------24 |
- | \------------------------------------------------- H003 m018 c004
- |
- \-------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_24 --> node_23 13 1 1.000 1 ==> 2
- node_23 --> node_21 6 1 1.000 2 ==> 1
- 7 1 1.000 2 ==> 1
- node_21 --> node_20 8 1 1.000 2 ==> 1
- node_20 --> node_19 9 1 0.500 2 ==> 1
- 10 1 1.000 2 ==> 1
- node_18 --> node_17 1 1 0.333 2 ==> 1
- 2 1 0.333 2 ==> 1
- 14 1 0.333 0 --> 1
- node_15 --> H013 m010 c004 12 1 0.333 2 ==> 1
- node_17 --> node_16 11 1 0.500 2 --> 1
- node_16 --> H005 m010 c004 9 1 0.500 1 ==> 2
- node_18 --> H014 m003 c002 11 1 0.500 2 --> 1
- node_19 --> H008 m005 c011 12 1 0.333 2 ==> 1
- node_20 --> H011 m011 c002 1 1 0.333 2 ==> 1
- 2 1 0.333 2 ==> 1
- 14 1 0.333 0 ==> 1
- node_23 --> H006 m001 c003 5 1 1.000 2 ==> 1
- node_23 --> node_22 3 1 1.000 2 ==> 1
- node_22 --> H010 m002 c013 4 1 1.000 2 ==> 1
- node_22 --> H009 m003 c006 12 1 0.333 2 ==> 1
- node_23 --> H003 m018 c004 1 1 0.333 2 ==> 1
- 2 1 0.333 2 ==> 1
- 14 1 0.333 0 ==> 1
-
-Tree number 33:
-
-Branch lengths and linkages for tree #33
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 25 root 0 0 0
- 24 25 1 1 1
- 22 24 2 2 2
- 21 22 4 4 4
- 20 21 1 1 2
- 19 20 1 1 1
- 18 19 0 0 1
- 15 18 0 0 1
-H004 m009 c002 (1) 15 0 0 0
-H013 m010 c004 (11) 15 1 1 1
- 17 18 2 2 3
- 16 17 1 0 2
-H008 m005 c011 (4) 16 1 1 1
-H012 m002 c004 (13) 16 0 0 0
-H014 m003 c002 (10) 17 1 0 1
-H007 m028 c015 (12) 19 1 0 1
-H005 m010 c004 (3) 20 1 0 1
-H011 m011 c002 (5) 21 0 0 0
-H002 m003 c006 (6) 22 0 0 0
-H006 m001 c003 (2) 24 1 1 1
- 23 24 1 1 1
-H010 m002 c013 (7) 23 1 1 1
-H009 m003 c006 (8) 23 1 1 1
-H003 m018 c004 (9) 24 3 3 3
-H000 ancetre (14) 25 0 0 0
--------------------------------------------------------------------------
-Sum 24
-
-Tree length = 24
-Consistency index (CI) = 0.5833
-Homoplasy index (HI) = 0.4167
-CI excluding uninformative characters = 0.5455
-HI excluding uninformative characters = 0.4545
-Retention index (RI) = 0.7872
-Rescaled consistency index (RC) = 0.4592
-
- /------ H004 m009 c002
- /-----------15
- | \------ H013 m010 c004
- |
- /----18 /------ H008 m005 c011
- | | /-----16
- | | | \------ H012 m002 c004
- /----19 \----17
- | | \------------- H014 m003 c002
- | |
- /-----20 \------------------------- H007 m028 c015
- | |
- /----21 \------------------------------- H005 m010 c004
- | |
- /----22 \-------------------------------------- H011 m011 c002
- | |
- | \-------------------------------------------- H002 m003 c006
- |
- +-------------------------------------------------- H006 m001 c003
- /-----24
- | | /------ H010 m002 c013
- | +------------------------------------------23
- | | \------ H009 m003 c006
------25 |
- | \-------------------------------------------------- H003 m018 c004
- |
- \--------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_25 --> node_24 13 1 1.000 1 ==> 2
- node_24 --> node_22 6 1 1.000 2 ==> 1
- 7 1 1.000 2 ==> 1
- node_22 --> node_21 1 1 0.333 2 ==> 1
- 2 1 0.333 2 ==> 1
- 8 1 1.000 2 ==> 1
- 14 1 0.333 0 ==> 1
- node_21 --> node_20 10 1 1.000 2 ==> 1
- node_20 --> node_19 9 1 1.000 2 ==> 1
- node_15 --> H013 m010 c004 12 1 0.333 2 ==> 1
- node_18 --> node_17 1 1 0.333 1 ==> 2
- 2 1 0.333 1 ==> 2
- node_17 --> node_16 14 1 0.333 1 --> 0
- node_16 --> H008 m005 c011 12 1 0.333 2 ==> 1
- node_17 --> H014 m003 c002 11 1 0.333 2 --> 1
- node_19 --> H007 m028 c015 11 1 0.333 2 --> 1
- node_20 --> H005 m010 c004 11 1 0.333 2 --> 1
- node_24 --> H006 m001 c003 5 1 1.000 2 ==> 1
- node_24 --> node_23 3 1 1.000 2 ==> 1
- node_23 --> H010 m002 c013 4 1 1.000 2 ==> 1
- node_23 --> H009 m003 c006 12 1 0.333 2 ==> 1
- node_24 --> H003 m018 c004 1 1 0.333 2 ==> 1
- 2 1 0.333 2 ==> 1
- 14 1 0.333 0 ==> 1
-
-Tree number 34:
-
-Branch lengths and linkages for tree #34
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 25 root 0 0 0
- 24 25 1 1 1
- 22 24 3 3 3
- 21 22 3 3 3
- 20 21 1 1 2
- 19 20 1 1 1
- 18 19 0 0 1
- 15 18 0 0 1
-H004 m009 c002 (1) 15 0 0 0
-H013 m010 c004 (11) 15 1 1 1
- 17 18 2 2 3
- 16 17 1 0 2
-H008 m005 c011 (4) 16 1 1 1
-H012 m002 c004 (13) 16 0 0 0
-H014 m003 c002 (10) 17 1 0 1
-H007 m028 c015 (12) 19 1 0 1
-H005 m010 c004 (3) 20 1 0 1
-H011 m011 c002 (5) 21 0 0 0
-H003 m018 c004 (9) 22 0 0 0
-H006 m001 c003 (2) 24 1 1 1
-H002 m003 c006 (6) 24 2 2 2
- 23 24 1 1 1
-H010 m002 c013 (7) 23 1 1 1
-H009 m003 c006 (8) 23 1 1 1
-H000 ancetre (14) 25 0 0 0
--------------------------------------------------------------------------
-Sum 23
-
-Tree length = 23
-Consistency index (CI) = 0.6087
-Homoplasy index (HI) = 0.3913
-CI excluding uninformative characters = 0.5714
-HI excluding uninformative characters = 0.4286
-Retention index (RI) = 0.8085
-Rescaled consistency index (RC) = 0.4921
-
- /------ H004 m009 c002
- /-----------15
- | \------ H013 m010 c004
- |
- /----18 /------ H008 m005 c011
- | | /-----16
- | | | \------ H012 m002 c004
- /----19 \----17
- | | \------------- H014 m003 c002
- | |
- /-----20 \------------------------- H007 m028 c015
- | |
- /----21 \------------------------------- H005 m010 c004
- | |
- /----22 \-------------------------------------- H011 m011 c002
- | |
- | \-------------------------------------------- H003 m018 c004
- |
- +-------------------------------------------------- H006 m001 c003
- /-----24
- | +-------------------------------------------------- H002 m003 c006
- | |
- | | /------ H010 m002 c013
------25 \------------------------------------------23
- | \------ H009 m003 c006
- |
- \--------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_25 --> node_24 13 1 1.000 1 ==> 2
- node_24 --> node_22 1 1 0.500 2 ==> 1
- 2 1 0.500 2 ==> 1
- 14 1 0.500 0 ==> 1
- node_22 --> node_21 6 1 0.500 2 ==> 1
- 7 1 0.500 2 ==> 1
- 8 1 1.000 2 ==> 1
- node_21 --> node_20 10 1 1.000 2 ==> 1
- node_20 --> node_19 9 1 1.000 2 ==> 1
- node_15 --> H013 m010 c004 12 1 0.333 2 ==> 1
- node_18 --> node_17 1 1 0.500 1 ==> 2
- 2 1 0.500 1 ==> 2
- node_17 --> node_16 14 1 0.500 1 --> 0
- node_16 --> H008 m005 c011 12 1 0.333 2 ==> 1
- node_17 --> H014 m003 c002 11 1 0.333 2 --> 1
- node_19 --> H007 m028 c015 11 1 0.333 2 --> 1
- node_20 --> H005 m010 c004 11 1 0.333 2 --> 1
- node_24 --> H006 m001 c003 5 1 1.000 2 ==> 1
- node_24 --> H002 m003 c006 6 1 0.500 2 ==> 1
- 7 1 0.500 2 ==> 1
- node_24 --> node_23 3 1 1.000 2 ==> 1
- node_23 --> H010 m002 c013 4 1 1.000 2 ==> 1
- node_23 --> H009 m003 c006 12 1 0.333 2 ==> 1
-
-Tree number 35:
-
-Branch lengths and linkages for tree #35
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 23 root 0 0 0
- 22 23 1 1 1
- 20 22 2 2 2
- 19 20 3 3 3
- 18 19 0 0 1
- 17 18 3 3 3
- 16 17 0 0 1
-H004 m009 c002 (1) 16 0 0 0
- 15 16 1 1 1
-H005 m010 c004 (3) 15 1 1 1
-H011 m011 c002 (5) 15 1 1 1
-H007 m028 c015 (12) 16 1 1 1
-H013 m010 c004 (11) 17 1 0 1
-H008 m005 c011 (4) 18 1 0 1
-H014 m003 c002 (10) 19 1 1 1
-H012 m002 c004 (13) 19 0 0 0
-H002 m003 c006 (6) 20 0 0 0
-H006 m001 c003 (2) 22 1 1 1
- 21 22 1 1 1
-H010 m002 c013 (7) 21 1 1 1
-H009 m003 c006 (8) 21 1 1 1
-H003 m018 c004 (9) 22 3 3 3
-H000 ancetre (14) 23 0 0 0
--------------------------------------------------------------------------
-Sum 23
-
-Tree length = 23
-Consistency index (CI) = 0.6087
-Homoplasy index (HI) = 0.3913
-CI excluding uninformative characters = 0.5714
-HI excluding uninformative characters = 0.4286
-Retention index (RI) = 0.8085
-Rescaled consistency index (RC) = 0.4921
-
- /-------------- H004 m009 c002
- |
- | /------- H005 m010 c004
- /-----16-----15
- | | \------- H011 m011 c002
- | |
- /-----17 \-------------- H007 m028 c015
- | |
- /-----18 \--------------------- H013 m010 c004
- | |
- | \---------------------------- H008 m005 c011
- /-----19
- | +----------------------------------- H014 m003 c002
- | |
- /-----20 \----------------------------------- H012 m002 c004
- | |
- | \------------------------------------------ H002 m003 c006
- |
- +------------------------------------------------- H006 m001 c003
- /-----22
- | | /------- H010 m002 c013
- | +----------------------------------------21
- | | \------- H009 m003 c006
-------23 |
- | \------------------------------------------------- H003 m018 c004
- |
- \-------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_23 --> node_22 13 1 1.000 1 ==> 2
- node_22 --> node_20 6 1 1.000 2 ==> 1
- 7 1 1.000 2 ==> 1
- node_20 --> node_19 8 1 1.000 2 ==> 1
- 9 1 0.500 2 ==> 1
- 10 1 0.500 2 ==> 1
- node_18 --> node_17 1 1 0.500 2 ==> 1
- 2 1 0.500 2 ==> 1
- 14 1 0.500 0 ==> 1
- node_16 --> node_15 9 1 0.500 1 ==> 2
- node_15 --> H005 m010 c004 11 1 0.333 2 ==> 1
- node_15 --> H011 m011 c002 10 1 0.500 1 ==> 2
- node_16 --> H007 m028 c015 11 1 0.333 2 ==> 1
- node_17 --> H013 m010 c004 12 1 0.333 2 --> 1
- node_18 --> H008 m005 c011 12 1 0.333 2 --> 1
- node_19 --> H014 m003 c002 11 1 0.333 2 ==> 1
- node_22 --> H006 m001 c003 5 1 1.000 2 ==> 1
- node_22 --> node_21 3 1 1.000 2 ==> 1
- node_21 --> H010 m002 c013 4 1 1.000 2 ==> 1
- node_21 --> H009 m003 c006 12 1 0.333 2 ==> 1
- node_22 --> H003 m018 c004 1 1 0.500 2 ==> 1
- 2 1 0.500 2 ==> 1
- 14 1 0.500 0 ==> 1
-
-Tree number 36:
-
-Branch lengths and linkages for tree #36
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 23 root 0 0 0
- 22 23 1 1 1
- 20 22 2 2 2
- 19 20 2 2 3
- 17 19 3 3 3
- 15 17 1 0 1
-H004 m009 c002 (1) 15 0 0 0
-H013 m010 c004 (11) 15 1 1 1
- 16 17 1 1 1
-H005 m010 c004 (3) 16 0 0 1
-H007 m028 c015 (12) 16 1 0 1
-H011 m011 c002 (5) 17 1 1 2
- 18 19 1 0 1
-H008 m005 c011 (4) 18 1 1 1
-H014 m003 c002 (10) 18 1 1 1
-H012 m002 c004 (13) 18 0 0 0
-H002 m003 c006 (6) 20 0 0 0
-H006 m001 c003 (2) 22 1 1 1
- 21 22 1 1 1
-H010 m002 c013 (7) 21 1 1 1
-H009 m003 c006 (8) 21 1 1 1
-H003 m018 c004 (9) 22 3 3 3
-H000 ancetre (14) 23 0 0 0
--------------------------------------------------------------------------
-Sum 23
-
-Tree length = 23
-Consistency index (CI) = 0.6087
-Homoplasy index (HI) = 0.3913
-CI excluding uninformative characters = 0.5714
-HI excluding uninformative characters = 0.4286
-Retention index (RI) = 0.8085
-Rescaled consistency index (RC) = 0.4921
-
- /--------- H004 m009 c002
- /-------15
- | \--------- H013 m010 c004
- |
- | /--------- H005 m010 c004
- /-------17-------16
- | | \--------- H007 m028 c015
- | |
- | \------------------ H011 m011 c002
- /-------19
- | | /--------- H008 m005 c011
- | | |
- | \----------------18--------- H014 m003 c002
- /-------20 |
- | | \--------- H012 m002 c004
- | |
- | \------------------------------------ H002 m003 c006
- |
- +--------------------------------------------- H006 m001 c003
- /-------22
- | | /--------- H010 m002 c013
- | +----------------------------------21
- | | \--------- H009 m003 c006
---------23 |
- | \--------------------------------------------- H003 m018 c004
- |
- \------------------------------------------------------ H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_23 --> node_22 13 1 1.000 1 ==> 2
- node_22 --> node_20 6 1 1.000 2 ==> 1
- 7 1 1.000 2 ==> 1
- node_20 --> node_19 8 1 1.000 2 ==> 1
- 10 1 0.500 2 ==> 1
- node_19 --> node_17 1 1 0.500 2 ==> 1
- 2 1 0.500 2 ==> 1
- 14 1 0.500 0 ==> 1
- node_17 --> node_15 9 1 0.333 2 --> 1
- node_15 --> H013 m010 c004 12 1 0.333 2 ==> 1
- node_17 --> node_16 11 1 0.500 2 ==> 1
- node_16 --> H007 m028 c015 9 1 0.333 2 --> 1
- node_17 --> H011 m011 c002 10 1 0.500 1 ==> 2
- node_19 --> node_18 9 1 0.333 2 --> 1
- node_18 --> H008 m005 c011 12 1 0.333 2 ==> 1
- node_18 --> H014 m003 c002 11 1 0.500 2 ==> 1
- node_22 --> H006 m001 c003 5 1 1.000 2 ==> 1
- node_22 --> node_21 3 1 1.000 2 ==> 1
- node_21 --> H010 m002 c013 4 1 1.000 2 ==> 1
- node_21 --> H009 m003 c006 12 1 0.333 2 ==> 1
- node_22 --> H003 m018 c004 1 1 0.500 2 ==> 1
- 2 1 0.500 2 ==> 1
- 14 1 0.500 0 ==> 1
-
-Tree number 37:
-
-Branch lengths and linkages for tree #37
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 22 root 0 0 0
- 21 22 1 1 1
- 19 21 2 2 2
- 18 19 1 1 1
- 17 18 2 2 2
- 16 17 3 3 3
-H004 m009 c002 (1) 16 0 0 0
- 15 16 1 1 1
-H005 m010 c004 (3) 15 1 1 1
-H007 m028 c015 (12) 15 0 0 0
-H013 m010 c004 (11) 16 1 1 1
-H008 m005 c011 (4) 17 1 1 1
-H014 m003 c002 (10) 17 1 1 1
-H012 m002 c004 (13) 17 0 0 0
-H011 m011 c002 (5) 18 3 3 3
-H002 m003 c006 (6) 19 0 0 0
-H006 m001 c003 (2) 21 1 1 1
- 20 21 1 1 1
-H010 m002 c013 (7) 20 1 1 1
-H009 m003 c006 (8) 20 1 1 1
-H003 m018 c004 (9) 21 3 3 3
-H000 ancetre (14) 22 0 0 0
--------------------------------------------------------------------------
-Sum 24
-
-Tree length = 24
-Consistency index (CI) = 0.5833
-Homoplasy index (HI) = 0.4167
-CI excluding uninformative characters = 0.5455
-HI excluding uninformative characters = 0.4545
-Retention index (RI) = 0.7872
-Rescaled consistency index (RC) = 0.4592
-
- /---------------- H004 m009 c002
- |
- | /-------- H005 m010 c004
- /------16------15
- | | \-------- H007 m028 c015
- | |
- | \---------------- H013 m010 c004
- |
- /------17------------------------ H008 m005 c011
- | |
- | +------------------------ H014 m003 c002
- /-----18 |
- | | \------------------------ H012 m002 c004
- | |
- /------19 \-------------------------------- H011 m011 c002
- | |
- | \--------------------------------------- H002 m003 c006
- |
- +----------------------------------------------- H006 m001 c003
- /------21
- | | /-------- H010 m002 c013
- | +-------------------------------------20
- | | \-------- H009 m003 c006
--------22 |
- | \----------------------------------------------- H003 m018 c004
- |
- \------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_22 --> node_21 13 1 1.000 1 ==> 2
- node_21 --> node_19 6 1 1.000 2 ==> 1
- 7 1 1.000 2 ==> 1
- node_19 --> node_18 8 1 1.000 2 ==> 1
- node_18 --> node_17 9 1 0.500 2 ==> 1
- 10 1 1.000 2 ==> 1
- node_17 --> node_16 1 1 0.333 2 ==> 1
- 2 1 0.333 2 ==> 1
- 14 1 0.333 0 ==> 1
- node_16 --> node_15 11 1 0.500 2 ==> 1
- node_15 --> H005 m010 c004 9 1 0.500 1 ==> 2
- node_16 --> H013 m010 c004 12 1 0.333 2 ==> 1
- node_17 --> H008 m005 c011 12 1 0.333 2 ==> 1
- node_17 --> H014 m003 c002 11 1 0.500 2 ==> 1
- node_18 --> H011 m011 c002 1 1 0.333 2 ==> 1
- 2 1 0.333 2 ==> 1
- 14 1 0.333 0 ==> 1
- node_21 --> H006 m001 c003 5 1 1.000 2 ==> 1
- node_21 --> node_20 3 1 1.000 2 ==> 1
- node_20 --> H010 m002 c013 4 1 1.000 2 ==> 1
- node_20 --> H009 m003 c006 12 1 0.333 2 ==> 1
- node_21 --> H003 m018 c004 1 1 0.333 2 ==> 1
- 2 1 0.333 2 ==> 1
- 14 1 0.333 0 ==> 1
-
-Tree number 38:
-
-Branch lengths and linkages for tree #38
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 23 root 0 0 0
- 22 23 1 1 1
- 20 22 2 2 2
- 19 20 1 1 1
- 18 19 2 2 2
- 17 18 1 1 2
- 16 17 3 2 3
- 15 16 1 1 1
-H004 m009 c002 (1) 15 0 0 0
-H013 m010 c004 (11) 15 1 1 1
-H005 m010 c004 (3) 16 1 1 1
-H007 m028 c015 (12) 16 0 0 0
-H014 m003 c002 (10) 17 0 0 0
-H008 m005 c011 (4) 18 1 1 1
-H012 m002 c004 (13) 18 0 0 0
-H011 m011 c002 (5) 19 3 3 3
-H002 m003 c006 (6) 20 0 0 0
-H006 m001 c003 (2) 22 1 1 1
- 21 22 1 1 1
-H010 m002 c013 (7) 21 1 1 1
-H009 m003 c006 (8) 21 1 1 1
-H003 m018 c004 (9) 22 3 3 3
-H000 ancetre (14) 23 0 0 0
--------------------------------------------------------------------------
-Sum 24
-
-Tree length = 24
-Consistency index (CI) = 0.5833
-Homoplasy index (HI) = 0.4167
-CI excluding uninformative characters = 0.5455
-HI excluding uninformative characters = 0.4545
-Retention index (RI) = 0.7872
-Rescaled consistency index (RC) = 0.4592
-
- /------- H004 m009 c002
- /-----15
- | \------- H013 m010 c004
- |
- /-----16-------------- H005 m010 c004
- | |
- /-----17 \-------------- H007 m028 c015
- | |
- | \--------------------- H014 m003 c002
- /-----18
- | +---------------------------- H008 m005 c011
- | |
- /-----19 \---------------------------- H012 m002 c004
- | |
- /-----20 \----------------------------------- H011 m011 c002
- | |
- | \------------------------------------------ H002 m003 c006
- |
- +------------------------------------------------- H006 m001 c003
- /-----22
- | | /------- H010 m002 c013
- | +----------------------------------------21
- | | \------- H009 m003 c006
-------23 |
- | \------------------------------------------------- H003 m018 c004
- |
- \-------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_23 --> node_22 13 1 1.000 1 ==> 2
- node_22 --> node_20 6 1 1.000 2 ==> 1
- 7 1 1.000 2 ==> 1
- node_20 --> node_19 8 1 1.000 2 ==> 1
- node_19 --> node_18 9 1 0.500 2 ==> 1
- 10 1 1.000 2 ==> 1
- node_18 --> node_17 11 1 0.500 2 ==> 1
- node_17 --> node_16 1 1 0.333 2 ==> 1
- 2 1 0.333 2 ==> 1
- 14 1 0.333 0 --> 1
- node_16 --> node_15 11 1 0.500 1 ==> 2
- node_15 --> H013 m010 c004 12 1 0.333 2 ==> 1
- node_16 --> H005 m010 c004 9 1 0.500 1 ==> 2
- node_18 --> H008 m005 c011 12 1 0.333 2 ==> 1
- node_19 --> H011 m011 c002 1 1 0.333 2 ==> 1
- 2 1 0.333 2 ==> 1
- 14 1 0.333 0 ==> 1
- node_22 --> H006 m001 c003 5 1 1.000 2 ==> 1
- node_22 --> node_21 3 1 1.000 2 ==> 1
- node_21 --> H010 m002 c013 4 1 1.000 2 ==> 1
- node_21 --> H009 m003 c006 12 1 0.333 2 ==> 1
- node_22 --> H003 m018 c004 1 1 0.333 2 ==> 1
- 2 1 0.333 2 ==> 1
- 14 1 0.333 0 ==> 1
-
-Tree number 39:
-
-Branch lengths and linkages for tree #39
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 24 root 0 0 0
- 23 24 1 1 1
- 21 23 2 2 2
- 20 21 1 1 1
- 19 20 2 2 2
- 18 19 0 0 1
- 17 18 3 3 3
- 16 17 0 0 1
-H004 m009 c002 (1) 16 0 0 0
- 15 16 1 1 1
-H005 m010 c004 (3) 15 1 1 1
-H007 m028 c015 (12) 15 0 0 0
-H013 m010 c004 (11) 17 1 0 1
-H008 m005 c011 (4) 18 1 0 1
-H014 m003 c002 (10) 19 1 1 1
-H012 m002 c004 (13) 19 0 0 0
-H011 m011 c002 (5) 20 3 3 3
-H002 m003 c006 (6) 21 0 0 0
-H006 m001 c003 (2) 23 1 1 1
- 22 23 1 1 1
-H010 m002 c013 (7) 22 1 1 1
-H009 m003 c006 (8) 22 1 1 1
-H003 m018 c004 (9) 23 3 3 3
-H000 ancetre (14) 24 0 0 0
--------------------------------------------------------------------------
-Sum 24
-
-Tree length = 24
-Consistency index (CI) = 0.5833
-Homoplasy index (HI) = 0.4167
-CI excluding uninformative characters = 0.5455
-HI excluding uninformative characters = 0.4545
-Retention index (RI) = 0.7872
-Rescaled consistency index (RC) = 0.4592
-
- /------------- H004 m009 c002
- |
- /----16 /------ H005 m010 c004
- | \-----15
- /----17 \------ H007 m028 c015
- | |
- /----18 \------------------- H013 m010 c004
- | |
- | \------------------------- H008 m005 c011
- /-----19
- | +------------------------------- H014 m003 c002
- | |
- /----20 \------------------------------- H012 m002 c004
- | |
- /----21 \-------------------------------------- H011 m011 c002
- | |
- | \-------------------------------------------- H002 m003 c006
- |
- +-------------------------------------------------- H006 m001 c003
- /-----23
- | | /------ H010 m002 c013
- | +------------------------------------------22
- | | \------ H009 m003 c006
------24 |
- | \-------------------------------------------------- H003 m018 c004
- |
- \--------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_24 --> node_23 13 1 1.000 1 ==> 2
- node_23 --> node_21 6 1 1.000 2 ==> 1
- 7 1 1.000 2 ==> 1
- node_21 --> node_20 8 1 1.000 2 ==> 1
- node_20 --> node_19 9 1 0.500 2 ==> 1
- 10 1 1.000 2 ==> 1
- node_18 --> node_17 1 1 0.333 2 ==> 1
- 2 1 0.333 2 ==> 1
- 14 1 0.333 0 ==> 1
- node_16 --> node_15 11 1 0.500 2 ==> 1
- node_15 --> H005 m010 c004 9 1 0.500 1 ==> 2
- node_17 --> H013 m010 c004 12 1 0.333 2 --> 1
- node_18 --> H008 m005 c011 12 1 0.333 2 --> 1
- node_19 --> H014 m003 c002 11 1 0.500 2 ==> 1
- node_20 --> H011 m011 c002 1 1 0.333 2 ==> 1
- 2 1 0.333 2 ==> 1
- 14 1 0.333 0 ==> 1
- node_23 --> H006 m001 c003 5 1 1.000 2 ==> 1
- node_23 --> node_22 3 1 1.000 2 ==> 1
- node_22 --> H010 m002 c013 4 1 1.000 2 ==> 1
- node_22 --> H009 m003 c006 12 1 0.333 2 ==> 1
- node_23 --> H003 m018 c004 1 1 0.333 2 ==> 1
- 2 1 0.333 2 ==> 1
- 14 1 0.333 0 ==> 1
-
-Tree number 40:
-
-Branch lengths and linkages for tree #40
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 24 root 0 0 0
- 23 24 1 1 1
- 21 23 2 2 2
- 20 21 4 4 4
- 19 20 1 1 2
- 18 19 1 1 1
- 15 18 0 0 1
-H004 m009 c002 (1) 15 0 0 0
-H013 m010 c004 (11) 15 1 1 1
- 17 18 2 2 3
- 16 17 1 0 2
-H008 m005 c011 (4) 16 1 1 1
-H012 m002 c004 (13) 16 0 0 0
-H014 m003 c002 (10) 17 1 0 1
-H007 m028 c015 (12) 18 1 0 1
-H005 m010 c004 (3) 19 1 0 1
-H011 m011 c002 (5) 20 0 0 0
-H002 m003 c006 (6) 21 0 0 0
-H006 m001 c003 (2) 23 1 1 1
- 22 23 1 1 1
-H010 m002 c013 (7) 22 1 1 1
-H009 m003 c006 (8) 22 1 1 1
-H003 m018 c004 (9) 23 3 3 3
-H000 ancetre (14) 24 0 0 0
--------------------------------------------------------------------------
-Sum 24
-
-Tree length = 24
-Consistency index (CI) = 0.5833
-Homoplasy index (HI) = 0.4167
-CI excluding uninformative characters = 0.5455
-HI excluding uninformative characters = 0.4545
-Retention index (RI) = 0.7872
-Rescaled consistency index (RC) = 0.4592
-
- /------- H004 m009 c002
- /------------15
- | \------- H013 m010 c004
- |
- | /------- H008 m005 c011
- | /-----16
- /-----18 | \------- H012 m002 c004
- | +-----17
- | | \-------------- H014 m003 c002
- /-----19 |
- | | \--------------------- H007 m028 c015
- | |
- /-----20 \---------------------------- H005 m010 c004
- | |
- /-----21 \----------------------------------- H011 m011 c002
- | |
- | \------------------------------------------ H002 m003 c006
- |
- +------------------------------------------------- H006 m001 c003
- /-----23
- | | /------- H010 m002 c013
- | +----------------------------------------22
- | | \------- H009 m003 c006
-------24 |
- | \------------------------------------------------- H003 m018 c004
- |
- \-------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_24 --> node_23 13 1 1.000 1 ==> 2
- node_23 --> node_21 6 1 1.000 2 ==> 1
- 7 1 1.000 2 ==> 1
- node_21 --> node_20 1 1 0.333 2 ==> 1
- 2 1 0.333 2 ==> 1
- 8 1 1.000 2 ==> 1
- 14 1 0.333 0 ==> 1
- node_20 --> node_19 10 1 1.000 2 ==> 1
- node_19 --> node_18 9 1 1.000 2 ==> 1
- node_15 --> H013 m010 c004 12 1 0.333 2 ==> 1
- node_18 --> node_17 1 1 0.333 1 ==> 2
- 2 1 0.333 1 ==> 2
- node_17 --> node_16 14 1 0.333 1 --> 0
- node_16 --> H008 m005 c011 12 1 0.333 2 ==> 1
- node_17 --> H014 m003 c002 11 1 0.333 2 --> 1
- node_18 --> H007 m028 c015 11 1 0.333 2 --> 1
- node_19 --> H005 m010 c004 11 1 0.333 2 --> 1
- node_23 --> H006 m001 c003 5 1 1.000 2 ==> 1
- node_23 --> node_22 3 1 1.000 2 ==> 1
- node_22 --> H010 m002 c013 4 1 1.000 2 ==> 1
- node_22 --> H009 m003 c006 12 1 0.333 2 ==> 1
- node_23 --> H003 m018 c004 1 1 0.333 2 ==> 1
- 2 1 0.333 2 ==> 1
- 14 1 0.333 0 ==> 1
-
-Tree number 41:
-
-Branch lengths and linkages for tree #41
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 25 root 0 0 0
- 24 25 1 1 1
- 22 24 2 2 2
- 21 22 4 4 4
- 20 21 1 1 2
- 19 20 1 1 1
- 18 19 0 0 1
-H004 m009 c002 (1) 18 0 0 0
- 17 18 0 0 1
- 16 17 3 3 3
-H008 m005 c011 (4) 16 1 0 1
- 15 16 0 0 1
-H014 m003 c002 (10) 15 1 1 1
-H012 m002 c004 (13) 15 0 0 0
-H013 m010 c004 (11) 17 1 0 1
-H007 m028 c015 (12) 19 1 0 1
-H005 m010 c004 (3) 20 1 0 1
-H011 m011 c002 (5) 21 0 0 0
-H002 m003 c006 (6) 22 0 0 0
-H006 m001 c003 (2) 24 1 1 1
- 23 24 1 1 1
-H010 m002 c013 (7) 23 1 1 1
-H009 m003 c006 (8) 23 1 1 1
-H003 m018 c004 (9) 24 3 3 3
-H000 ancetre (14) 25 0 0 0
--------------------------------------------------------------------------
-Sum 24
-
-Tree length = 24
-Consistency index (CI) = 0.5833
-Homoplasy index (HI) = 0.4167
-CI excluding uninformative characters = 0.5455
-HI excluding uninformative characters = 0.4545
-Retention index (RI) = 0.7872
-Rescaled consistency index (RC) = 0.4592
-
- /----------------------- H004 m009 c002
- |
- | /----------- H008 m005 c011
- /----18 |
- | | /----16 /------ H014 m003 c002
- | | | \---15
- | \----17 \------ H012 m002 c004
- /---19 |
- | | \----------------- H013 m010 c004
- | |
- /----20 \----------------------------- H007 m028 c015
- | |
- /----21 \---------------------------------- H005 m010 c004
- | |
- /----22 \---------------------------------------- H011 m011 c002
- | |
- | \---------------------------------------------- H002 m003 c006
- |
- +---------------------------------------------------- H006 m001 c003
- /---24
- | | /------ H010 m002 c013
- | +--------------------------------------------23
- | | \------ H009 m003 c006
------25 |
- | \---------------------------------------------------- H003 m018 c004
- |
- \--------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_25 --> node_24 13 1 1.000 1 ==> 2
- node_24 --> node_22 6 1 1.000 2 ==> 1
- 7 1 1.000 2 ==> 1
- node_22 --> node_21 1 1 0.333 2 ==> 1
- 2 1 0.333 2 ==> 1
- 8 1 1.000 2 ==> 1
- 14 1 0.333 0 ==> 1
- node_21 --> node_20 10 1 1.000 2 ==> 1
- node_20 --> node_19 9 1 1.000 2 ==> 1
- node_17 --> node_16 1 1 0.333 1 ==> 2
- 2 1 0.333 1 ==> 2
- 14 1 0.333 1 ==> 0
- node_16 --> H008 m005 c011 12 1 0.333 2 --> 1
- node_15 --> H014 m003 c002 11 1 0.333 2 ==> 1
- node_17 --> H013 m010 c004 12 1 0.333 2 --> 1
- node_19 --> H007 m028 c015 11 1 0.333 2 --> 1
- node_20 --> H005 m010 c004 11 1 0.333 2 --> 1
- node_24 --> H006 m001 c003 5 1 1.000 2 ==> 1
- node_24 --> node_23 3 1 1.000 2 ==> 1
- node_23 --> H010 m002 c013 4 1 1.000 2 ==> 1
- node_23 --> H009 m003 c006 12 1 0.333 2 ==> 1
- node_24 --> H003 m018 c004 1 1 0.333 2 ==> 1
- 2 1 0.333 2 ==> 1
- 14 1 0.333 0 ==> 1
-
-Tree number 42:
-
-Branch lengths and linkages for tree #42
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 25 root 0 0 0
- 24 25 1 1 1
- 22 24 2 2 2
- 21 22 4 4 4
- 20 21 1 1 2
- 19 20 1 1 1
- 15 19 0 0 1
-H004 m009 c002 (1) 15 0 0 0
-H013 m010 c004 (11) 15 1 1 1
- 18 19 0 0 2
- 17 18 2 2 3
- 16 17 1 0 2
-H008 m005 c011 (4) 16 1 1 1
-H012 m002 c004 (13) 16 0 0 0
-H014 m003 c002 (10) 17 1 0 1
-H007 m028 c015 (12) 18 1 0 1
-H005 m010 c004 (3) 20 1 0 1
-H011 m011 c002 (5) 21 0 0 0
-H002 m003 c006 (6) 22 0 0 0
-H006 m001 c003 (2) 24 1 1 1
- 23 24 1 1 1
-H010 m002 c013 (7) 23 1 1 1
-H009 m003 c006 (8) 23 1 1 1
-H003 m018 c004 (9) 24 3 3 3
-H000 ancetre (14) 25 0 0 0
--------------------------------------------------------------------------
-Sum 24
-
-Tree length = 24
-Consistency index (CI) = 0.5833
-Homoplasy index (HI) = 0.4167
-CI excluding uninformative characters = 0.5455
-HI excluding uninformative characters = 0.4545
-Retention index (RI) = 0.7872
-Rescaled consistency index (RC) = 0.4592
-
- /------ H004 m009 c002
- /-----------------15
- | \------ H013 m010 c004
- |
- | /------ H008 m005 c011
- /----19 /-----16
- | | | \------ H012 m002 c004
- | | /----17
- | | | \------------- H014 m003 c002
- /-----20 \----18
- | | \------------------- H007 m028 c015
- | |
- /----21 \------------------------------- H005 m010 c004
- | |
- /----22 \-------------------------------------- H011 m011 c002
- | |
- | \-------------------------------------------- H002 m003 c006
- |
- +-------------------------------------------------- H006 m001 c003
- /-----24
- | | /------ H010 m002 c013
- | +------------------------------------------23
- | | \------ H009 m003 c006
------25 |
- | \-------------------------------------------------- H003 m018 c004
- |
- \--------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_25 --> node_24 13 1 1.000 1 ==> 2
- node_24 --> node_22 6 1 1.000 2 ==> 1
- 7 1 1.000 2 ==> 1
- node_22 --> node_21 1 1 0.333 2 ==> 1
- 2 1 0.333 2 ==> 1
- 8 1 1.000 2 ==> 1
- 14 1 0.333 0 ==> 1
- node_21 --> node_20 10 1 1.000 2 ==> 1
- node_20 --> node_19 9 1 1.000 2 ==> 1
- node_15 --> H013 m010 c004 12 1 0.333 2 ==> 1
- node_18 --> node_17 1 1 0.333 1 ==> 2
- 2 1 0.333 1 ==> 2
- node_17 --> node_16 14 1 0.333 1 --> 0
- node_16 --> H008 m005 c011 12 1 0.333 2 ==> 1
- node_17 --> H014 m003 c002 11 1 0.333 2 --> 1
- node_18 --> H007 m028 c015 11 1 0.333 2 --> 1
- node_20 --> H005 m010 c004 11 1 0.333 2 --> 1
- node_24 --> H006 m001 c003 5 1 1.000 2 ==> 1
- node_24 --> node_23 3 1 1.000 2 ==> 1
- node_23 --> H010 m002 c013 4 1 1.000 2 ==> 1
- node_23 --> H009 m003 c006 12 1 0.333 2 ==> 1
- node_24 --> H003 m018 c004 1 1 0.333 2 ==> 1
- 2 1 0.333 2 ==> 1
- 14 1 0.333 0 ==> 1
-
-Tree number 43:
-
-Branch lengths and linkages for tree #43
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 24 root 0 0 0
- 23 24 1 1 1
- 21 23 2 2 2
- 20 21 1 1 3
- 18 20 3 3 3
- 17 18 1 0 2
- 15 17 1 0 1
-H004 m009 c002 (1) 15 0 0 0
-H013 m010 c004 (11) 15 1 1 1
- 16 17 1 1 1
-H005 m010 c004 (3) 16 0 0 1
-H007 m028 c015 (12) 16 1 0 1
-H011 m011 c002 (5) 18 0 0 2
- 19 20 2 0 2
-H008 m005 c011 (4) 19 1 1 1
-H014 m003 c002 (10) 19 1 1 1
-H012 m002 c004 (13) 19 0 0 0
-H002 m003 c006 (6) 21 0 0 0
-H006 m001 c003 (2) 23 1 1 1
- 22 23 1 1 1
-H010 m002 c013 (7) 22 1 1 1
-H009 m003 c006 (8) 22 1 1 1
-H003 m018 c004 (9) 23 3 3 3
-H000 ancetre (14) 24 0 0 0
--------------------------------------------------------------------------
-Sum 23
-
-Tree length = 23
-Consistency index (CI) = 0.6087
-Homoplasy index (HI) = 0.3913
-CI excluding uninformative characters = 0.5714
-HI excluding uninformative characters = 0.4286
-Retention index (RI) = 0.8085
-Rescaled consistency index (RC) = 0.4921
-
- /-------- H004 m009 c002
- /------15
- | \-------- H013 m010 c004
- /------17
- | | /-------- H005 m010 c004
- | \------16
- /------18 \-------- H007 m028 c015
- | |
- | \------------------------ H011 m011 c002
- /-----20
- | | /-------- H008 m005 c011
- | | |
- | \----------------------19-------- H014 m003 c002
- /------21 |
- | | \-------- H012 m002 c004
- | |
- | \--------------------------------------- H002 m003 c006
- |
- +----------------------------------------------- H006 m001 c003
- /------23
- | | /-------- H010 m002 c013
- | +-------------------------------------22
- | | \-------- H009 m003 c006
--------24 |
- | \----------------------------------------------- H003 m018 c004
- |
- \------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_24 --> node_23 13 1 1.000 1 ==> 2
- node_23 --> node_21 6 1 1.000 2 ==> 1
- 7 1 1.000 2 ==> 1
- node_21 --> node_20 8 1 1.000 2 ==> 1
- node_20 --> node_18 1 1 0.500 2 ==> 1
- 2 1 0.500 2 ==> 1
- 14 1 0.500 0 ==> 1
- node_18 --> node_17 10 1 0.500 2 --> 1
- node_17 --> node_15 9 1 0.333 2 --> 1
- node_15 --> H013 m010 c004 12 1 0.333 2 ==> 1
- node_17 --> node_16 11 1 0.500 2 ==> 1
- node_16 --> H007 m028 c015 9 1 0.333 2 --> 1
- node_20 --> node_19 9 1 0.333 2 --> 1
- 10 1 0.500 2 --> 1
- node_19 --> H008 m005 c011 12 1 0.333 2 ==> 1
- node_19 --> H014 m003 c002 11 1 0.500 2 ==> 1
- node_23 --> H006 m001 c003 5 1 1.000 2 ==> 1
- node_23 --> node_22 3 1 1.000 2 ==> 1
- node_22 --> H010 m002 c013 4 1 1.000 2 ==> 1
- node_22 --> H009 m003 c006 12 1 0.333 2 ==> 1
- node_23 --> H003 m018 c004 1 1 0.500 2 ==> 1
- 2 1 0.500 2 ==> 1
- 14 1 0.500 0 ==> 1
-
-Tree number 44:
-
-Branch lengths and linkages for tree #44
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 23 root 0 0 0
- 22 23 1 1 1
- 20 22 2 2 2
- 19 20 3 3 3
- 18 19 0 0 1
- 17 18 3 3 3
- 16 17 0 0 1
-H004 m009 c002 (1) 16 0 0 0
- 15 16 1 1 1
-H005 m010 c004 (3) 15 1 1 1
-H007 m028 c015 (12) 15 0 0 0
-H011 m011 c002 (5) 16 2 2 2
-H013 m010 c004 (11) 17 1 0 1
-H008 m005 c011 (4) 18 1 0 1
-H014 m003 c002 (10) 19 1 1 1
-H012 m002 c004 (13) 19 0 0 0
-H002 m003 c006 (6) 20 0 0 0
-H006 m001 c003 (2) 22 1 1 1
- 21 22 1 1 1
-H010 m002 c013 (7) 21 1 1 1
-H009 m003 c006 (8) 21 1 1 1
-H003 m018 c004 (9) 22 3 3 3
-H000 ancetre (14) 23 0 0 0
--------------------------------------------------------------------------
-Sum 23
-
-Tree length = 23
-Consistency index (CI) = 0.6087
-Homoplasy index (HI) = 0.3913
-CI excluding uninformative characters = 0.5714
-HI excluding uninformative characters = 0.4286
-Retention index (RI) = 0.8085
-Rescaled consistency index (RC) = 0.4921
-
- /-------------- H004 m009 c002
- |
- | /------- H005 m010 c004
- /-----16-----15
- | | \------- H007 m028 c015
- | |
- /-----17 \-------------- H011 m011 c002
- | |
- /-----18 \--------------------- H013 m010 c004
- | |
- | \---------------------------- H008 m005 c011
- /-----19
- | +----------------------------------- H014 m003 c002
- | |
- /-----20 \----------------------------------- H012 m002 c004
- | |
- | \------------------------------------------ H002 m003 c006
- |
- +------------------------------------------------- H006 m001 c003
- /-----22
- | | /------- H010 m002 c013
- | +----------------------------------------21
- | | \------- H009 m003 c006
-------23 |
- | \------------------------------------------------- H003 m018 c004
- |
- \-------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_23 --> node_22 13 1 1.000 1 ==> 2
- node_22 --> node_20 6 1 1.000 2 ==> 1
- 7 1 1.000 2 ==> 1
- node_20 --> node_19 8 1 1.000 2 ==> 1
- 9 1 0.333 2 ==> 1
- 10 1 0.500 2 ==> 1
- node_18 --> node_17 1 1 0.500 2 ==> 1
- 2 1 0.500 2 ==> 1
- 14 1 0.500 0 ==> 1
- node_16 --> node_15 11 1 0.500 2 ==> 1
- node_15 --> H005 m010 c004 9 1 0.333 1 ==> 2
- node_16 --> H011 m011 c002 9 1 0.333 1 ==> 2
- 10 1 0.500 1 ==> 2
- node_17 --> H013 m010 c004 12 1 0.333 2 --> 1
- node_18 --> H008 m005 c011 12 1 0.333 2 --> 1
- node_19 --> H014 m003 c002 11 1 0.500 2 ==> 1
- node_22 --> H006 m001 c003 5 1 1.000 2 ==> 1
- node_22 --> node_21 3 1 1.000 2 ==> 1
- node_21 --> H010 m002 c013 4 1 1.000 2 ==> 1
- node_21 --> H009 m003 c006 12 1 0.333 2 ==> 1
- node_22 --> H003 m018 c004 1 1 0.500 2 ==> 1
- 2 1 0.500 2 ==> 1
- 14 1 0.500 0 ==> 1
-
-Tree number 45:
-
-Branch lengths and linkages for tree #45
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 24 root 0 0 0
- 23 24 1 1 1
- 21 23 2 2 2
- 20 21 3 3 3
- 19 20 0 0 1
- 18 19 3 3 3
- 17 18 0 0 1
-H004 m009 c002 (1) 17 0 0 0
- 16 17 0 0 1
- 15 16 1 1 1
-H005 m010 c004 (3) 15 1 0 1
-H007 m028 c015 (12) 15 0 0 1
-H011 m011 c002 (5) 16 2 1 2
-H013 m010 c004 (11) 18 1 0 1
-H008 m005 c011 (4) 19 1 0 1
-H014 m003 c002 (10) 20 1 1 1
-H012 m002 c004 (13) 20 0 0 0
-H002 m003 c006 (6) 21 0 0 0
-H006 m001 c003 (2) 23 1 1 1
- 22 23 1 1 1
-H010 m002 c013 (7) 22 1 1 1
-H009 m003 c006 (8) 22 1 1 1
-H003 m018 c004 (9) 23 3 3 3
-H000 ancetre (14) 24 0 0 0
--------------------------------------------------------------------------
-Sum 23
-
-Tree length = 23
-Consistency index (CI) = 0.6087
-Homoplasy index (HI) = 0.3913
-CI excluding uninformative characters = 0.5714
-HI excluding uninformative characters = 0.4286
-Retention index (RI) = 0.8085
-Rescaled consistency index (RC) = 0.4921
-
- /------------------- H004 m009 c002
- |
- | /------ H005 m010 c004
- /----17 /-----15
- | | | \------ H007 m028 c015
- | \----16
- /----18 \------------- H011 m011 c002
- | |
- /-----19 \------------------------- H013 m010 c004
- | |
- | \------------------------------- H008 m005 c011
- /----20
- | +-------------------------------------- H014 m003 c002
- | |
- /----21 \-------------------------------------- H012 m002 c004
- | |
- | \-------------------------------------------- H002 m003 c006
- |
- +-------------------------------------------------- H006 m001 c003
- /-----23
- | | /------ H010 m002 c013
- | +------------------------------------------22
- | | \------ H009 m003 c006
------24 |
- | \-------------------------------------------------- H003 m018 c004
- |
- \--------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_24 --> node_23 13 1 1.000 1 ==> 2
- node_23 --> node_21 6 1 1.000 2 ==> 1
- 7 1 1.000 2 ==> 1
- node_21 --> node_20 8 1 1.000 2 ==> 1
- 9 1 0.333 2 ==> 1
- 10 1 0.500 2 ==> 1
- node_19 --> node_18 1 1 0.500 2 ==> 1
- 2 1 0.500 2 ==> 1
- 14 1 0.500 0 ==> 1
- node_16 --> node_15 11 1 0.500 2 ==> 1
- node_15 --> H005 m010 c004 9 1 0.333 1 --> 2
- node_16 --> H011 m011 c002 9 1 0.333 1 --> 2
- 10 1 0.500 1 ==> 2
- node_18 --> H013 m010 c004 12 1 0.333 2 --> 1
- node_19 --> H008 m005 c011 12 1 0.333 2 --> 1
- node_20 --> H014 m003 c002 11 1 0.500 2 ==> 1
- node_23 --> H006 m001 c003 5 1 1.000 2 ==> 1
- node_23 --> node_22 3 1 1.000 2 ==> 1
- node_22 --> H010 m002 c013 4 1 1.000 2 ==> 1
- node_22 --> H009 m003 c006 12 1 0.333 2 ==> 1
- node_23 --> H003 m018 c004 1 1 0.500 2 ==> 1
- 2 1 0.500 2 ==> 1
- 14 1 0.500 0 ==> 1
-
-Tree number 46:
-
-Branch lengths and linkages for tree #46
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 25 root 0 0 0
- 24 25 1 1 1
- 22 24 3 3 3
- 21 22 3 3 3
- 20 21 1 1 2
- 19 20 1 1 1
- 18 19 0 0 1
-H004 m009 c002 (1) 18 0 0 0
- 17 18 0 0 1
- 16 17 3 3 3
-H008 m005 c011 (4) 16 1 0 1
- 15 16 0 0 1
-H014 m003 c002 (10) 15 1 1 1
-H012 m002 c004 (13) 15 0 0 0
-H013 m010 c004 (11) 17 1 0 1
-H007 m028 c015 (12) 19 1 0 1
-H005 m010 c004 (3) 20 1 0 1
-H011 m011 c002 (5) 21 0 0 0
-H003 m018 c004 (9) 22 0 0 0
-H006 m001 c003 (2) 24 1 1 1
-H002 m003 c006 (6) 24 2 2 2
- 23 24 1 1 1
-H010 m002 c013 (7) 23 1 1 1
-H009 m003 c006 (8) 23 1 1 1
-H000 ancetre (14) 25 0 0 0
--------------------------------------------------------------------------
-Sum 23
-
-Tree length = 23
-Consistency index (CI) = 0.6087
-Homoplasy index (HI) = 0.3913
-CI excluding uninformative characters = 0.5714
-HI excluding uninformative characters = 0.4286
-Retention index (RI) = 0.8085
-Rescaled consistency index (RC) = 0.4921
-
- /----------------------- H004 m009 c002
- |
- | /----------- H008 m005 c011
- /----18 |
- | | /----16 /------ H014 m003 c002
- | | | \---15
- | \----17 \------ H012 m002 c004
- /---19 |
- | | \----------------- H013 m010 c004
- | |
- /----20 \----------------------------- H007 m028 c015
- | |
- /----21 \---------------------------------- H005 m010 c004
- | |
- /----22 \---------------------------------------- H011 m011 c002
- | |
- | \---------------------------------------------- H003 m018 c004
- |
- +---------------------------------------------------- H006 m001 c003
- /---24
- | +---------------------------------------------------- H002 m003 c006
- | |
- | | /------ H010 m002 c013
------25 \--------------------------------------------23
- | \------ H009 m003 c006
- |
- \--------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_25 --> node_24 13 1 1.000 1 ==> 2
- node_24 --> node_22 1 1 0.500 2 ==> 1
- 2 1 0.500 2 ==> 1
- 14 1 0.500 0 ==> 1
- node_22 --> node_21 6 1 0.500 2 ==> 1
- 7 1 0.500 2 ==> 1
- 8 1 1.000 2 ==> 1
- node_21 --> node_20 10 1 1.000 2 ==> 1
- node_20 --> node_19 9 1 1.000 2 ==> 1
- node_17 --> node_16 1 1 0.500 1 ==> 2
- 2 1 0.500 1 ==> 2
- 14 1 0.500 1 ==> 0
- node_16 --> H008 m005 c011 12 1 0.333 2 --> 1
- node_15 --> H014 m003 c002 11 1 0.333 2 ==> 1
- node_17 --> H013 m010 c004 12 1 0.333 2 --> 1
- node_19 --> H007 m028 c015 11 1 0.333 2 --> 1
- node_20 --> H005 m010 c004 11 1 0.333 2 --> 1
- node_24 --> H006 m001 c003 5 1 1.000 2 ==> 1
- node_24 --> H002 m003 c006 6 1 0.500 2 ==> 1
- 7 1 0.500 2 ==> 1
- node_24 --> node_23 3 1 1.000 2 ==> 1
- node_23 --> H010 m002 c013 4 1 1.000 2 ==> 1
- node_23 --> H009 m003 c006 12 1 0.333 2 ==> 1
-
-Tree number 47:
-
-Branch lengths and linkages for tree #47
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 22 root 0 0 0
- 21 22 1 1 1
- 19 21 2 2 2
- 18 19 3 3 3
- 17 18 1 1 2
- 16 17 3 2 3
- 15 16 1 1 1
-H004 m009 c002 (1) 15 0 0 0
-H011 m011 c002 (5) 15 2 2 2
-H013 m010 c004 (11) 15 1 1 1
-H005 m010 c004 (3) 16 1 1 1
-H007 m028 c015 (12) 16 0 0 0
-H014 m003 c002 (10) 17 0 0 0
-H008 m005 c011 (4) 18 1 1 1
-H012 m002 c004 (13) 18 0 0 0
-H002 m003 c006 (6) 19 0 0 0
-H006 m001 c003 (2) 21 1 1 1
- 20 21 1 1 1
-H010 m002 c013 (7) 20 1 1 1
-H009 m003 c006 (8) 20 1 1 1
-H003 m018 c004 (9) 21 3 3 3
-H000 ancetre (14) 22 0 0 0
--------------------------------------------------------------------------
-Sum 23
-
-Tree length = 23
-Consistency index (CI) = 0.6087
-Homoplasy index (HI) = 0.3913
-CI excluding uninformative characters = 0.5714
-HI excluding uninformative characters = 0.4286
-Retention index (RI) = 0.8085
-Rescaled consistency index (RC) = 0.4921
-
- /-------- H004 m009 c002
- |
- /------15-------- H011 m011 c002
- | |
- | \-------- H013 m010 c004
- /------16
- | +---------------- H005 m010 c004
- | |
- /------17 \---------------- H007 m028 c015
- | |
- | \------------------------ H014 m003 c002
- /-----18
- | +-------------------------------- H008 m005 c011
- | |
- /------19 \-------------------------------- H012 m002 c004
- | |
- | \--------------------------------------- H002 m003 c006
- |
- +----------------------------------------------- H006 m001 c003
- /------21
- | | /-------- H010 m002 c013
- | +-------------------------------------20
- | | \-------- H009 m003 c006
--------22 |
- | \----------------------------------------------- H003 m018 c004
- |
- \------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_22 --> node_21 13 1 1.000 1 ==> 2
- node_21 --> node_19 6 1 1.000 2 ==> 1
- 7 1 1.000 2 ==> 1
- node_19 --> node_18 8 1 1.000 2 ==> 1
- 9 1 0.333 2 ==> 1
- 10 1 0.500 2 ==> 1
- node_18 --> node_17 11 1 0.500 2 ==> 1
- node_17 --> node_16 1 1 0.500 2 ==> 1
- 2 1 0.500 2 ==> 1
- 14 1 0.500 0 --> 1
- node_16 --> node_15 11 1 0.500 1 ==> 2
- node_15 --> H011 m011 c002 9 1 0.333 1 ==> 2
- 10 1 0.500 1 ==> 2
- node_15 --> H013 m010 c004 12 1 0.333 2 ==> 1
- node_16 --> H005 m010 c004 9 1 0.333 1 ==> 2
- node_18 --> H008 m005 c011 12 1 0.333 2 ==> 1
- node_21 --> H006 m001 c003 5 1 1.000 2 ==> 1
- node_21 --> node_20 3 1 1.000 2 ==> 1
- node_20 --> H010 m002 c013 4 1 1.000 2 ==> 1
- node_20 --> H009 m003 c006 12 1 0.333 2 ==> 1
- node_21 --> H003 m018 c004 1 1 0.500 2 ==> 1
- 2 1 0.500 2 ==> 1
- 14 1 0.500 0 ==> 1
-
-Tree number 48:
-
-Branch lengths and linkages for tree #48
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 23 root 0 0 0
- 22 23 1 1 1
- 20 22 2 2 2
- 19 20 4 4 4
- 18 19 1 1 2
- 16 18 1 0 1
-H004 m009 c002 (1) 16 0 0 0
- 15 16 3 3 3
-H008 m005 c011 (4) 15 1 1 1
-H014 m003 c002 (10) 15 1 1 1
-H012 m002 c004 (13) 15 0 0 0
-H013 m010 c004 (11) 16 1 1 1
- 17 18 1 1 1
-H005 m010 c004 (3) 17 0 0 1
-H007 m028 c015 (12) 17 1 0 1
-H011 m011 c002 (5) 19 0 0 0
-H002 m003 c006 (6) 20 0 0 0
-H006 m001 c003 (2) 22 1 1 1
- 21 22 1 1 1
-H010 m002 c013 (7) 21 1 1 1
-H009 m003 c006 (8) 21 1 1 1
-H003 m018 c004 (9) 22 3 3 3
-H000 ancetre (14) 23 0 0 0
--------------------------------------------------------------------------
-Sum 24
-
-Tree length = 24
-Consistency index (CI) = 0.5833
-Homoplasy index (HI) = 0.4167
-CI excluding uninformative characters = 0.5455
-HI excluding uninformative characters = 0.4545
-Retention index (RI) = 0.7872
-Rescaled consistency index (RC) = 0.4592
-
- /---------------- H004 m009 c002
- |
- | /-------- H008 m005 c011
- | |
- /------16------15-------- H014 m003 c002
- | | |
- | | \-------- H012 m002 c004
- | |
- /------18 \---------------- H013 m010 c004
- | |
- | | /-------- H005 m010 c004
- /-----19 \--------------17
- | | \-------- H007 m028 c015
- | |
- /------20 \-------------------------------- H011 m011 c002
- | |
- | \--------------------------------------- H002 m003 c006
- |
- +----------------------------------------------- H006 m001 c003
- /------22
- | | /-------- H010 m002 c013
- | +-------------------------------------21
- | | \-------- H009 m003 c006
--------23 |
- | \----------------------------------------------- H003 m018 c004
- |
- \------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_23 --> node_22 13 1 1.000 1 ==> 2
- node_22 --> node_20 6 1 1.000 2 ==> 1
- 7 1 1.000 2 ==> 1
- node_20 --> node_19 1 1 0.333 2 ==> 1
- 2 1 0.333 2 ==> 1
- 8 1 1.000 2 ==> 1
- 14 1 0.333 0 ==> 1
- node_19 --> node_18 10 1 1.000 2 ==> 1
- node_18 --> node_16 9 1 0.500 2 --> 1
- node_16 --> node_15 1 1 0.333 1 ==> 2
- 2 1 0.333 1 ==> 2
- 14 1 0.333 1 ==> 0
- node_15 --> H008 m005 c011 12 1 0.333 2 ==> 1
- node_15 --> H014 m003 c002 11 1 0.500 2 ==> 1
- node_16 --> H013 m010 c004 12 1 0.333 2 ==> 1
- node_18 --> node_17 11 1 0.500 2 ==> 1
- node_17 --> H007 m028 c015 9 1 0.500 2 --> 1
- node_22 --> H006 m001 c003 5 1 1.000 2 ==> 1
- node_22 --> node_21 3 1 1.000 2 ==> 1
- node_21 --> H010 m002 c013 4 1 1.000 2 ==> 1
- node_21 --> H009 m003 c006 12 1 0.333 2 ==> 1
- node_22 --> H003 m018 c004 1 1 0.333 2 ==> 1
- 2 1 0.333 2 ==> 1
- 14 1 0.333 0 ==> 1
-
-Tree number 49:
-
-Branch lengths and linkages for tree #49
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 23 root 0 0 0
- 22 23 1 1 1
- 20 22 3 3 3
- 19 20 3 3 3
- 18 19 1 1 2
- 16 18 1 0 1
-H004 m009 c002 (1) 16 0 0 0
- 15 16 3 3 3
-H008 m005 c011 (4) 15 1 1 1
-H014 m003 c002 (10) 15 1 1 1
-H012 m002 c004 (13) 15 0 0 0
-H013 m010 c004 (11) 16 1 1 1
- 17 18 1 1 1
-H005 m010 c004 (3) 17 0 0 1
-H007 m028 c015 (12) 17 1 0 1
-H011 m011 c002 (5) 19 0 0 0
-H003 m018 c004 (9) 20 0 0 0
-H006 m001 c003 (2) 22 1 1 1
-H002 m003 c006 (6) 22 2 2 2
- 21 22 1 1 1
-H010 m002 c013 (7) 21 1 1 1
-H009 m003 c006 (8) 21 1 1 1
-H000 ancetre (14) 23 0 0 0
--------------------------------------------------------------------------
-Sum 23
-
-Tree length = 23
-Consistency index (CI) = 0.6087
-Homoplasy index (HI) = 0.3913
-CI excluding uninformative characters = 0.5714
-HI excluding uninformative characters = 0.4286
-Retention index (RI) = 0.8085
-Rescaled consistency index (RC) = 0.4921
-
- /---------------- H004 m009 c002
- |
- | /-------- H008 m005 c011
- | |
- /------16------15-------- H014 m003 c002
- | | |
- | | \-------- H012 m002 c004
- | |
- /------18 \---------------- H013 m010 c004
- | |
- | | /-------- H005 m010 c004
- /-----19 \--------------17
- | | \-------- H007 m028 c015
- | |
- /------20 \-------------------------------- H011 m011 c002
- | |
- | \--------------------------------------- H003 m018 c004
- |
- +----------------------------------------------- H006 m001 c003
- /------22
- | +----------------------------------------------- H002 m003 c006
- | |
- | | /-------- H010 m002 c013
--------23 \-------------------------------------21
- | \-------- H009 m003 c006
- |
- \------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_23 --> node_22 13 1 1.000 1 ==> 2
- node_22 --> node_20 1 1 0.500 2 ==> 1
- 2 1 0.500 2 ==> 1
- 14 1 0.500 0 ==> 1
- node_20 --> node_19 6 1 0.500 2 ==> 1
- 7 1 0.500 2 ==> 1
- 8 1 1.000 2 ==> 1
- node_19 --> node_18 10 1 1.000 2 ==> 1
- node_18 --> node_16 9 1 0.500 2 --> 1
- node_16 --> node_15 1 1 0.500 1 ==> 2
- 2 1 0.500 1 ==> 2
- 14 1 0.500 1 ==> 0
- node_15 --> H008 m005 c011 12 1 0.333 2 ==> 1
- node_15 --> H014 m003 c002 11 1 0.500 2 ==> 1
- node_16 --> H013 m010 c004 12 1 0.333 2 ==> 1
- node_18 --> node_17 11 1 0.500 2 ==> 1
- node_17 --> H007 m028 c015 9 1 0.500 2 --> 1
- node_22 --> H006 m001 c003 5 1 1.000 2 ==> 1
- node_22 --> H002 m003 c006 6 1 0.500 2 ==> 1
- 7 1 0.500 2 ==> 1
- node_22 --> node_21 3 1 1.000 2 ==> 1
- node_21 --> H010 m002 c013 4 1 1.000 2 ==> 1
- node_21 --> H009 m003 c006 12 1 0.333 2 ==> 1
-
-Tree number 50:
-
-Branch lengths and linkages for tree #50
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 25 root 0 0 0
- 24 25 1 1 1
- 22 24 3 3 3
- 21 22 3 3 3
- 20 21 1 1 2
- 19 20 1 1 1
- 15 19 0 0 1
-H004 m009 c002 (1) 15 0 0 0
-H013 m010 c004 (11) 15 1 1 1
- 18 19 0 0 2
- 17 18 2 2 3
- 16 17 1 0 2
-H008 m005 c011 (4) 16 1 1 1
-H012 m002 c004 (13) 16 0 0 0
-H014 m003 c002 (10) 17 1 0 1
-H007 m028 c015 (12) 18 1 0 1
-H005 m010 c004 (3) 20 1 0 1
-H011 m011 c002 (5) 21 0 0 0
-H003 m018 c004 (9) 22 0 0 0
-H006 m001 c003 (2) 24 1 1 1
-H002 m003 c006 (6) 24 2 2 2
- 23 24 1 1 1
-H010 m002 c013 (7) 23 1 1 1
-H009 m003 c006 (8) 23 1 1 1
-H000 ancetre (14) 25 0 0 0
--------------------------------------------------------------------------
-Sum 23
-
-Tree length = 23
-Consistency index (CI) = 0.6087
-Homoplasy index (HI) = 0.3913
-CI excluding uninformative characters = 0.5714
-HI excluding uninformative characters = 0.4286
-Retention index (RI) = 0.8085
-Rescaled consistency index (RC) = 0.4921
-
- /------ H004 m009 c002
- /-----------------15
- | \------ H013 m010 c004
- |
- | /------ H008 m005 c011
- /----19 /-----16
- | | | \------ H012 m002 c004
- | | /----17
- | | | \------------- H014 m003 c002
- /-----20 \----18
- | | \------------------- H007 m028 c015
- | |
- /----21 \------------------------------- H005 m010 c004
- | |
- /----22 \-------------------------------------- H011 m011 c002
- | |
- | \-------------------------------------------- H003 m018 c004
- |
- +-------------------------------------------------- H006 m001 c003
- /-----24
- | +-------------------------------------------------- H002 m003 c006
- | |
- | | /------ H010 m002 c013
------25 \------------------------------------------23
- | \------ H009 m003 c006
- |
- \--------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_25 --> node_24 13 1 1.000 1 ==> 2
- node_24 --> node_22 1 1 0.500 2 ==> 1
- 2 1 0.500 2 ==> 1
- 14 1 0.500 0 ==> 1
- node_22 --> node_21 6 1 0.500 2 ==> 1
- 7 1 0.500 2 ==> 1
- 8 1 1.000 2 ==> 1
- node_21 --> node_20 10 1 1.000 2 ==> 1
- node_20 --> node_19 9 1 1.000 2 ==> 1
- node_15 --> H013 m010 c004 12 1 0.333 2 ==> 1
- node_18 --> node_17 1 1 0.500 1 ==> 2
- 2 1 0.500 1 ==> 2
- node_17 --> node_16 14 1 0.500 1 --> 0
- node_16 --> H008 m005 c011 12 1 0.333 2 ==> 1
- node_17 --> H014 m003 c002 11 1 0.333 2 --> 1
- node_18 --> H007 m028 c015 11 1 0.333 2 --> 1
- node_20 --> H005 m010 c004 11 1 0.333 2 --> 1
- node_24 --> H006 m001 c003 5 1 1.000 2 ==> 1
- node_24 --> H002 m003 c006 6 1 0.500 2 ==> 1
- 7 1 0.500 2 ==> 1
- node_24 --> node_23 3 1 1.000 2 ==> 1
- node_23 --> H010 m002 c013 4 1 1.000 2 ==> 1
- node_23 --> H009 m003 c006 12 1 0.333 2 ==> 1
-
-Tree number 51:
-
-Branch lengths and linkages for tree #51
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 22 root 0 0 0
- 21 22 1 1 1
- 19 21 2 2 2
- 18 19 4 4 4
- 17 18 2 2 2
-H004 m009 c002 (1) 17 0 0 0
- 15 17 1 1 1
-H005 m010 c004 (3) 15 1 1 1
-H007 m028 c015 (12) 15 0 0 0
- 16 17 3 3 3
-H008 m005 c011 (4) 16 1 1 1
-H014 m003 c002 (10) 16 1 1 1
-H012 m002 c004 (13) 16 0 0 0
-H013 m010 c004 (11) 17 1 1 1
-H011 m011 c002 (5) 18 0 0 0
-H002 m003 c006 (6) 19 0 0 0
-H006 m001 c003 (2) 21 1 1 1
- 20 21 1 1 1
-H010 m002 c013 (7) 20 1 1 1
-H009 m003 c006 (8) 20 1 1 1
-H003 m018 c004 (9) 21 3 3 3
-H000 ancetre (14) 22 0 0 0
--------------------------------------------------------------------------
-Sum 24
-
-Tree length = 24
-Consistency index (CI) = 0.5833
-Homoplasy index (HI) = 0.4167
-CI excluding uninformative characters = 0.5455
-HI excluding uninformative characters = 0.4545
-Retention index (RI) = 0.7872
-Rescaled consistency index (RC) = 0.4592
-
- /------------------ H004 m009 c002
- |
- | /--------- H005 m010 c004
- +-------15
- | \--------- H007 m028 c015
- |
- /-------17 /--------- H008 m005 c011
- | | |
- | +-------16--------- H014 m003 c002
- | | |
- /-------18 | \--------- H012 m002 c004
- | | |
- | | \------------------ H013 m010 c004
- /-------19 |
- | | \--------------------------- H011 m011 c002
- | |
- | \------------------------------------ H002 m003 c006
- |
- +--------------------------------------------- H006 m001 c003
- /-------21
- | | /--------- H010 m002 c013
- | +----------------------------------20
- | | \--------- H009 m003 c006
---------22 |
- | \--------------------------------------------- H003 m018 c004
- |
- \------------------------------------------------------ H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_22 --> node_21 13 1 1.000 1 ==> 2
- node_21 --> node_19 6 1 1.000 2 ==> 1
- 7 1 1.000 2 ==> 1
- node_19 --> node_18 1 1 0.333 2 ==> 1
- 2 1 0.333 2 ==> 1
- 8 1 1.000 2 ==> 1
- 14 1 0.333 0 ==> 1
- node_18 --> node_17 9 1 0.500 2 ==> 1
- 10 1 1.000 2 ==> 1
- node_17 --> node_15 11 1 0.500 2 ==> 1
- node_15 --> H005 m010 c004 9 1 0.500 1 ==> 2
- node_17 --> node_16 1 1 0.333 1 ==> 2
- 2 1 0.333 1 ==> 2
- 14 1 0.333 1 ==> 0
- node_16 --> H008 m005 c011 12 1 0.333 2 ==> 1
- node_16 --> H014 m003 c002 11 1 0.500 2 ==> 1
- node_17 --> H013 m010 c004 12 1 0.333 2 ==> 1
- node_21 --> H006 m001 c003 5 1 1.000 2 ==> 1
- node_21 --> node_20 3 1 1.000 2 ==> 1
- node_20 --> H010 m002 c013 4 1 1.000 2 ==> 1
- node_20 --> H009 m003 c006 12 1 0.333 2 ==> 1
- node_21 --> H003 m018 c004 1 1 0.333 2 ==> 1
- 2 1 0.333 2 ==> 1
- 14 1 0.333 0 ==> 1
-
-Tree number 52:
-
-Branch lengths and linkages for tree #52
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 22 root 0 0 0
- 21 22 1 1 1
- 19 21 3 3 3
- 18 19 3 3 3
- 17 18 2 2 2
-H004 m009 c002 (1) 17 0 0 0
- 15 17 1 1 1
-H005 m010 c004 (3) 15 1 1 1
-H007 m028 c015 (12) 15 0 0 0
- 16 17 3 3 3
-H008 m005 c011 (4) 16 1 1 1
-H014 m003 c002 (10) 16 1 1 1
-H012 m002 c004 (13) 16 0 0 0
-H013 m010 c004 (11) 17 1 1 1
-H011 m011 c002 (5) 18 0 0 0
-H003 m018 c004 (9) 19 0 0 0
-H006 m001 c003 (2) 21 1 1 1
-H002 m003 c006 (6) 21 2 2 2
- 20 21 1 1 1
-H010 m002 c013 (7) 20 1 1 1
-H009 m003 c006 (8) 20 1 1 1
-H000 ancetre (14) 22 0 0 0
--------------------------------------------------------------------------
-Sum 23
-
-Tree length = 23
-Consistency index (CI) = 0.6087
-Homoplasy index (HI) = 0.3913
-CI excluding uninformative characters = 0.5714
-HI excluding uninformative characters = 0.4286
-Retention index (RI) = 0.8085
-Rescaled consistency index (RC) = 0.4921
-
- /------------------ H004 m009 c002
- |
- | /--------- H005 m010 c004
- +-------15
- | \--------- H007 m028 c015
- |
- /-------17 /--------- H008 m005 c011
- | | |
- | +-------16--------- H014 m003 c002
- | | |
- /-------18 | \--------- H012 m002 c004
- | | |
- | | \------------------ H013 m010 c004
- /-------19 |
- | | \--------------------------- H011 m011 c002
- | |
- | \------------------------------------ H003 m018 c004
- |
- /-------21--------------------------------------------- H006 m001 c003
- | |
- | +--------------------------------------------- H002 m003 c006
- | |
---------22 | /--------- H010 m002 c013
- | \----------------------------------20
- | \--------- H009 m003 c006
- |
- \------------------------------------------------------ H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_22 --> node_21 13 1 1.000 1 ==> 2
- node_21 --> node_19 1 1 0.500 2 ==> 1
- 2 1 0.500 2 ==> 1
- 14 1 0.500 0 ==> 1
- node_19 --> node_18 6 1 0.500 2 ==> 1
- 7 1 0.500 2 ==> 1
- 8 1 1.000 2 ==> 1
- node_18 --> node_17 9 1 0.500 2 ==> 1
- 10 1 1.000 2 ==> 1
- node_17 --> node_15 11 1 0.500 2 ==> 1
- node_15 --> H005 m010 c004 9 1 0.500 1 ==> 2
- node_17 --> node_16 1 1 0.500 1 ==> 2
- 2 1 0.500 1 ==> 2
- 14 1 0.500 1 ==> 0
- node_16 --> H008 m005 c011 12 1 0.333 2 ==> 1
- node_16 --> H014 m003 c002 11 1 0.500 2 ==> 1
- node_17 --> H013 m010 c004 12 1 0.333 2 ==> 1
- node_21 --> H006 m001 c003 5 1 1.000 2 ==> 1
- node_21 --> H002 m003 c006 6 1 0.500 2 ==> 1
- 7 1 0.500 2 ==> 1
- node_21 --> node_20 3 1 1.000 2 ==> 1
- node_20 --> H010 m002 c013 4 1 1.000 2 ==> 1
- node_20 --> H009 m003 c006 12 1 0.333 2 ==> 1
-
-Tree number 53:
-
-Branch lengths and linkages for tree #53
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 23 root 0 0 0
- 22 23 1 1 1
- 20 22 0 0 2
- 19 20 3 3 3
- 18 19 3 1 3
- 17 18 2 2 2
-H004 m009 c002 (1) 17 0 0 0
- 15 17 1 1 1
-H005 m010 c004 (3) 15 1 1 1
-H007 m028 c015 (12) 15 0 0 0
- 16 17 3 3 3
-H008 m005 c011 (4) 16 1 1 1
-H014 m003 c002 (10) 16 1 1 1
-H012 m002 c004 (13) 16 0 0 0
-H013 m010 c004 (11) 17 1 1 1
-H011 m011 c002 (5) 18 0 0 0
-H003 m018 c004 (9) 19 0 0 2
-H002 m003 c006 (6) 20 2 0 2
-H006 m001 c003 (2) 22 1 1 1
- 21 22 1 1 1
-H010 m002 c013 (7) 21 1 1 1
-H009 m003 c006 (8) 21 1 1 1
-H000 ancetre (14) 23 0 0 0
--------------------------------------------------------------------------
-Sum 23
-
-Tree length = 23
-Consistency index (CI) = 0.6087
-Homoplasy index (HI) = 0.3913
-CI excluding uninformative characters = 0.5714
-HI excluding uninformative characters = 0.4286
-Retention index (RI) = 0.8085
-Rescaled consistency index (RC) = 0.4921
-
- /---------------- H004 m009 c002
- |
- | /-------- H005 m010 c004
- +------15
- | \-------- H007 m028 c015
- |
- /------17 /-------- H008 m005 c011
- | | |
- | +------16-------- H014 m003 c002
- | | |
- /------18 | \-------- H012 m002 c004
- | | |
- | | \---------------- H013 m010 c004
- /-----19 |
- | | \------------------------ H011 m011 c002
- | |
- /------20 \-------------------------------- H003 m018 c004
- | |
- | \--------------------------------------- H002 m003 c006
- |
- /------22----------------------------------------------- H006 m001 c003
- | |
- | | /-------- H010 m002 c013
--------23 \-------------------------------------21
- | \-------- H009 m003 c006
- |
- \------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_23 --> node_22 13 1 1.000 1 ==> 2
- node_20 --> node_19 1 1 0.500 2 ==> 1
- 2 1 0.500 2 ==> 1
- 14 1 0.500 0 ==> 1
- node_19 --> node_18 6 1 0.500 2 --> 1
- 7 1 0.500 2 --> 1
- 8 1 1.000 2 ==> 1
- node_18 --> node_17 9 1 0.500 2 ==> 1
- 10 1 1.000 2 ==> 1
- node_17 --> node_15 11 1 0.500 2 ==> 1
- node_15 --> H005 m010 c004 9 1 0.500 1 ==> 2
- node_17 --> node_16 1 1 0.500 1 ==> 2
- 2 1 0.500 1 ==> 2
- 14 1 0.500 1 ==> 0
- node_16 --> H008 m005 c011 12 1 0.333 2 ==> 1
- node_16 --> H014 m003 c002 11 1 0.500 2 ==> 1
- node_17 --> H013 m010 c004 12 1 0.333 2 ==> 1
- node_20 --> H002 m003 c006 6 1 0.500 2 --> 1
- 7 1 0.500 2 --> 1
- node_22 --> H006 m001 c003 5 1 1.000 2 ==> 1
- node_22 --> node_21 3 1 1.000 2 ==> 1
- node_21 --> H010 m002 c013 4 1 1.000 2 ==> 1
- node_21 --> H009 m003 c006 12 1 0.333 2 ==> 1
-
-Tree number 54:
-
-Branch lengths and linkages for tree #54
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 24 root 0 0 0
- 23 24 1 1 1
- 21 23 0 0 2
- 20 21 3 3 3
- 19 20 3 1 3
- 18 19 1 1 2
- 17 18 1 1 1
- 16 17 0 0 1
-H004 m009 c002 (1) 16 0 0 0
- 15 16 3 3 3
-H008 m005 c011 (4) 15 1 1 1
-H014 m003 c002 (10) 15 1 1 1
-H012 m002 c004 (13) 15 0 0 0
-H013 m010 c004 (11) 16 1 1 1
-H007 m028 c015 (12) 17 1 0 1
-H005 m010 c004 (3) 18 1 0 1
-H011 m011 c002 (5) 19 0 0 0
-H003 m018 c004 (9) 20 0 0 2
-H002 m003 c006 (6) 21 2 0 2
-H006 m001 c003 (2) 23 1 1 1
- 22 23 1 1 1
-H010 m002 c013 (7) 22 1 1 1
-H009 m003 c006 (8) 22 1 1 1
-H000 ancetre (14) 24 0 0 0
--------------------------------------------------------------------------
-Sum 23
-
-Tree length = 23
-Consistency index (CI) = 0.6087
-Homoplasy index (HI) = 0.3913
-CI excluding uninformative characters = 0.5714
-HI excluding uninformative characters = 0.4286
-Retention index (RI) = 0.8085
-Rescaled consistency index (RC) = 0.4921
-
- /------------- H004 m009 c002
- |
- | /------ H008 m005 c011
- | |
- /----16-----15------ H014 m003 c002
- | | |
- | | \------ H012 m002 c004
- /----17 |
- | | \------------- H013 m010 c004
- | |
- /----18 \------------------- H007 m028 c015
- | |
- /-----19 \------------------------- H005 m010 c004
- | |
- /----20 \------------------------------- H011 m011 c002
- | |
- /----21 \-------------------------------------- H003 m018 c004
- | |
- | \-------------------------------------------- H002 m003 c006
- |
- /-----23-------------------------------------------------- H006 m001 c003
- | |
- | | /------ H010 m002 c013
------24 \------------------------------------------22
- | \------ H009 m003 c006
- |
- \--------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_24 --> node_23 13 1 1.000 1 ==> 2
- node_21 --> node_20 1 1 0.500 2 ==> 1
- 2 1 0.500 2 ==> 1
- 14 1 0.500 0 ==> 1
- node_20 --> node_19 6 1 0.500 2 --> 1
- 7 1 0.500 2 --> 1
- 8 1 1.000 2 ==> 1
- node_19 --> node_18 10 1 1.000 2 ==> 1
- node_18 --> node_17 9 1 1.000 2 ==> 1
- node_16 --> node_15 1 1 0.500 1 ==> 2
- 2 1 0.500 1 ==> 2
- 14 1 0.500 1 ==> 0
- node_15 --> H008 m005 c011 12 1 0.333 2 ==> 1
- node_15 --> H014 m003 c002 11 1 0.333 2 ==> 1
- node_16 --> H013 m010 c004 12 1 0.333 2 ==> 1
- node_17 --> H007 m028 c015 11 1 0.333 2 --> 1
- node_18 --> H005 m010 c004 11 1 0.333 2 --> 1
- node_21 --> H002 m003 c006 6 1 0.500 2 --> 1
- 7 1 0.500 2 --> 1
- node_23 --> H006 m001 c003 5 1 1.000 2 ==> 1
- node_23 --> node_22 3 1 1.000 2 ==> 1
- node_22 --> H010 m002 c013 4 1 1.000 2 ==> 1
- node_22 --> H009 m003 c006 12 1 0.333 2 ==> 1
-
-Tree number 55:
-
-Branch lengths and linkages for tree #55
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 26 root 0 0 0
- 25 26 1 1 1
- 23 25 0 0 2
- 22 23 3 3 3
- 21 22 3 1 3
- 20 21 1 1 2
- 19 20 1 1 1
- 18 19 0 0 1
-H004 m009 c002 (1) 18 0 0 0
- 17 18 0 0 1
- 16 17 3 3 3
-H008 m005 c011 (4) 16 1 0 1
- 15 16 0 0 1
-H014 m003 c002 (10) 15 1 1 1
-H012 m002 c004 (13) 15 0 0 0
-H013 m010 c004 (11) 17 1 0 1
-H007 m028 c015 (12) 19 1 0 1
-H005 m010 c004 (3) 20 1 0 1
-H011 m011 c002 (5) 21 0 0 0
-H003 m018 c004 (9) 22 0 0 2
-H002 m003 c006 (6) 23 2 0 2
-H006 m001 c003 (2) 25 1 1 1
- 24 25 1 1 1
-H010 m002 c013 (7) 24 1 1 1
-H009 m003 c006 (8) 24 1 1 1
-H000 ancetre (14) 26 0 0 0
--------------------------------------------------------------------------
-Sum 23
-
-Tree length = 23
-Consistency index (CI) = 0.6087
-Homoplasy index (HI) = 0.3913
-CI excluding uninformative characters = 0.5714
-HI excluding uninformative characters = 0.4286
-Retention index (RI) = 0.8085
-Rescaled consistency index (RC) = 0.4921
-
- /--------------------- H004 m009 c002
- |
- | /----------- H008 m005 c011
- /---18 |
- | | /---16 /----- H014 m003 c002
- | | | \----15
- | \---17 \----- H012 m002 c004
- /----19 |
- | | \---------------- H013 m010 c004
- | |
- /---20 \-------------------------- H007 m028 c015
- | |
- /---21 \-------------------------------- H005 m010 c004
- | |
- /---22 \------------------------------------- H011 m011 c002
- | |
- /----23 \------------------------------------------ H003 m018 c004
- | |
- | \----------------------------------------------- H002 m003 c006
- |
- /---25----------------------------------------------------- H006 m001 c003
- | |
- | | /----- H010 m002 c013
-----26 \----------------------------------------------24
- | \----- H009 m003 c006
- |
- \---------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_26 --> node_25 13 1 1.000 1 ==> 2
- node_23 --> node_22 1 1 0.500 2 ==> 1
- 2 1 0.500 2 ==> 1
- 14 1 0.500 0 ==> 1
- node_22 --> node_21 6 1 0.500 2 --> 1
- 7 1 0.500 2 --> 1
- 8 1 1.000 2 ==> 1
- node_21 --> node_20 10 1 1.000 2 ==> 1
- node_20 --> node_19 9 1 1.000 2 ==> 1
- node_17 --> node_16 1 1 0.500 1 ==> 2
- 2 1 0.500 1 ==> 2
- 14 1 0.500 1 ==> 0
- node_16 --> H008 m005 c011 12 1 0.333 2 --> 1
- node_15 --> H014 m003 c002 11 1 0.333 2 ==> 1
- node_17 --> H013 m010 c004 12 1 0.333 2 --> 1
- node_19 --> H007 m028 c015 11 1 0.333 2 --> 1
- node_20 --> H005 m010 c004 11 1 0.333 2 --> 1
- node_23 --> H002 m003 c006 6 1 0.500 2 --> 1
- 7 1 0.500 2 --> 1
- node_25 --> H006 m001 c003 5 1 1.000 2 ==> 1
- node_25 --> node_24 3 1 1.000 2 ==> 1
- node_24 --> H010 m002 c013 4 1 1.000 2 ==> 1
- node_24 --> H009 m003 c006 12 1 0.333 2 ==> 1
-
-Tree number 56:
-
-Branch lengths and linkages for tree #56
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 24 root 0 0 0
- 23 24 1 1 1
- 21 23 0 0 2
- 20 21 3 3 3
- 19 20 3 1 3
- 18 19 1 1 2
- 16 18 1 0 1
-H004 m009 c002 (1) 16 0 0 0
- 15 16 3 3 3
-H008 m005 c011 (4) 15 1 1 1
-H014 m003 c002 (10) 15 1 1 1
-H012 m002 c004 (13) 15 0 0 0
-H013 m010 c004 (11) 16 1 1 1
- 17 18 1 1 1
-H005 m010 c004 (3) 17 0 0 1
-H007 m028 c015 (12) 17 1 0 1
-H011 m011 c002 (5) 19 0 0 0
-H003 m018 c004 (9) 20 0 0 2
-H002 m003 c006 (6) 21 2 0 2
-H006 m001 c003 (2) 23 1 1 1
- 22 23 1 1 1
-H010 m002 c013 (7) 22 1 1 1
-H009 m003 c006 (8) 22 1 1 1
-H000 ancetre (14) 24 0 0 0
--------------------------------------------------------------------------
-Sum 23
-
-Tree length = 23
-Consistency index (CI) = 0.6087
-Homoplasy index (HI) = 0.3913
-CI excluding uninformative characters = 0.5714
-HI excluding uninformative characters = 0.4286
-Retention index (RI) = 0.8085
-Rescaled consistency index (RC) = 0.4921
-
- /-------------- H004 m009 c002
- |
- | /------- H008 m005 c011
- | |
- /-----16-----15------- H014 m003 c002
- | | |
- | | \------- H012 m002 c004
- | |
- /-----18 \-------------- H013 m010 c004
- | |
- | | /------- H005 m010 c004
- /-----19 \------------17
- | | \------- H007 m028 c015
- | |
- /-----20 \---------------------------- H011 m011 c002
- | |
- /-----21 \----------------------------------- H003 m018 c004
- | |
- | \------------------------------------------ H002 m003 c006
- |
- /-----23------------------------------------------------- H006 m001 c003
- | |
- | | /------- H010 m002 c013
-------24 \----------------------------------------22
- | \------- H009 m003 c006
- |
- \-------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_24 --> node_23 13 1 1.000 1 ==> 2
- node_21 --> node_20 1 1 0.500 2 ==> 1
- 2 1 0.500 2 ==> 1
- 14 1 0.500 0 ==> 1
- node_20 --> node_19 6 1 0.500 2 --> 1
- 7 1 0.500 2 --> 1
- 8 1 1.000 2 ==> 1
- node_19 --> node_18 10 1 1.000 2 ==> 1
- node_18 --> node_16 9 1 0.500 2 --> 1
- node_16 --> node_15 1 1 0.500 1 ==> 2
- 2 1 0.500 1 ==> 2
- 14 1 0.500 1 ==> 0
- node_15 --> H008 m005 c011 12 1 0.333 2 ==> 1
- node_15 --> H014 m003 c002 11 1 0.500 2 ==> 1
- node_16 --> H013 m010 c004 12 1 0.333 2 ==> 1
- node_18 --> node_17 11 1 0.500 2 ==> 1
- node_17 --> H007 m028 c015 9 1 0.500 2 --> 1
- node_21 --> H002 m003 c006 6 1 0.500 2 --> 1
- 7 1 0.500 2 --> 1
- node_23 --> H006 m001 c003 5 1 1.000 2 ==> 1
- node_23 --> node_22 3 1 1.000 2 ==> 1
- node_22 --> H010 m002 c013 4 1 1.000 2 ==> 1
- node_22 --> H009 m003 c006 12 1 0.333 2 ==> 1
-
-Tree number 57:
-
-Branch lengths and linkages for tree #57
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 25 root 0 0 0
- 24 25 1 1 1
- 22 24 0 0 2
- 21 22 3 3 3
- 20 21 3 1 3
- 19 20 1 1 1
- 18 19 1 1 1
-H004 m009 c002 (1) 18 0 0 0
- 17 18 0 0 1
- 16 17 3 3 3
-H008 m005 c011 (4) 16 1 0 1
- 15 16 0 0 1
-H014 m003 c002 (10) 15 1 1 1
-H012 m002 c004 (13) 15 0 0 0
-H013 m010 c004 (11) 17 1 0 1
-H007 m028 c015 (12) 18 1 1 1
-H005 m010 c004 (3) 19 1 1 1
-H011 m011 c002 (5) 20 0 0 0
-H003 m018 c004 (9) 21 0 0 2
-H002 m003 c006 (6) 22 2 0 2
-H006 m001 c003 (2) 24 1 1 1
- 23 24 1 1 1
-H010 m002 c013 (7) 23 1 1 1
-H009 m003 c006 (8) 23 1 1 1
-H000 ancetre (14) 25 0 0 0
--------------------------------------------------------------------------
-Sum 23
-
-Tree length = 23
-Consistency index (CI) = 0.6087
-Homoplasy index (HI) = 0.3913
-CI excluding uninformative characters = 0.5714
-HI excluding uninformative characters = 0.4286
-Retention index (RI) = 0.8085
-Rescaled consistency index (RC) = 0.4921
-
- /----------------------- H004 m009 c002
- |
- | /----------- H008 m005 c011
- | |
- | /----16 /------ H014 m003 c002
- /----18 | \---15
- | +----17 \------ H012 m002 c004
- | | |
- | | \----------------- H013 m010 c004
- /---19 |
- | | \----------------------- H007 m028 c015
- | |
- /----20 \----------------------------- H005 m010 c004
- | |
- /----21 \---------------------------------- H011 m011 c002
- | |
- /----22 \---------------------------------------- H003 m018 c004
- | |
- | \---------------------------------------------- H002 m003 c006
- |
- /---24---------------------------------------------------- H006 m001 c003
- | |
- | | /------ H010 m002 c013
------25 \--------------------------------------------23
- | \------ H009 m003 c006
- |
- \--------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_25 --> node_24 13 1 1.000 1 ==> 2
- node_22 --> node_21 1 1 0.500 2 ==> 1
- 2 1 0.500 2 ==> 1
- 14 1 0.500 0 ==> 1
- node_21 --> node_20 6 1 0.500 2 --> 1
- 7 1 0.500 2 --> 1
- 8 1 1.000 2 ==> 1
- node_20 --> node_19 10 1 1.000 2 ==> 1
- node_19 --> node_18 9 1 1.000 2 ==> 1
- node_17 --> node_16 1 1 0.500 1 ==> 2
- 2 1 0.500 1 ==> 2
- 14 1 0.500 1 ==> 0
- node_16 --> H008 m005 c011 12 1 0.333 2 --> 1
- node_15 --> H014 m003 c002 11 1 0.333 2 ==> 1
- node_17 --> H013 m010 c004 12 1 0.333 2 --> 1
- node_18 --> H007 m028 c015 11 1 0.333 2 ==> 1
- node_19 --> H005 m010 c004 11 1 0.333 2 ==> 1
- node_22 --> H002 m003 c006 6 1 0.500 2 --> 1
- 7 1 0.500 2 --> 1
- node_24 --> H006 m001 c003 5 1 1.000 2 ==> 1
- node_24 --> node_23 3 1 1.000 2 ==> 1
- node_23 --> H010 m002 c013 4 1 1.000 2 ==> 1
- node_23 --> H009 m003 c006 12 1 0.333 2 ==> 1
-
-Tree number 58:
-
-Branch lengths and linkages for tree #58
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 25 root 0 0 0
- 24 25 1 1 1
- 22 24 0 0 2
- 21 22 3 3 3
- 20 21 3 1 3
- 19 20 1 1 1
- 18 19 1 1 1
-H004 m009 c002 (1) 18 0 0 0
- 17 18 0 0 2
- 16 17 2 2 3
- 15 16 1 0 2
-H008 m005 c011 (4) 15 1 1 1
-H012 m002 c004 (13) 15 0 0 0
-H014 m003 c002 (10) 16 1 0 1
-H007 m028 c015 (12) 17 1 0 1
-H013 m010 c004 (11) 18 1 1 1
-H005 m010 c004 (3) 19 1 1 1
-H011 m011 c002 (5) 20 0 0 0
-H003 m018 c004 (9) 21 0 0 2
-H002 m003 c006 (6) 22 2 0 2
-H006 m001 c003 (2) 24 1 1 1
- 23 24 1 1 1
-H010 m002 c013 (7) 23 1 1 1
-H009 m003 c006 (8) 23 1 1 1
-H000 ancetre (14) 25 0 0 0
--------------------------------------------------------------------------
-Sum 23
-
-Tree length = 23
-Consistency index (CI) = 0.6087
-Homoplasy index (HI) = 0.3913
-CI excluding uninformative characters = 0.5714
-HI excluding uninformative characters = 0.4286
-Retention index (RI) = 0.8085
-Rescaled consistency index (RC) = 0.4921
-
- /----------------------- H004 m009 c002
- |
- | /------ H008 m005 c011
- | /---15
- | | \------ H012 m002 c004
- /----18 /----16
- | | | \----------- H014 m003 c002
- | +----17
- | | \----------------- H007 m028 c015
- /---19 |
- | | \----------------------- H013 m010 c004
- | |
- /----20 \----------------------------- H005 m010 c004
- | |
- /----21 \---------------------------------- H011 m011 c002
- | |
- /----22 \---------------------------------------- H003 m018 c004
- | |
- | \---------------------------------------------- H002 m003 c006
- |
- /---24---------------------------------------------------- H006 m001 c003
- | |
- | | /------ H010 m002 c013
------25 \--------------------------------------------23
- | \------ H009 m003 c006
- |
- \--------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_25 --> node_24 13 1 1.000 1 ==> 2
- node_22 --> node_21 1 1 0.500 2 ==> 1
- 2 1 0.500 2 ==> 1
- 14 1 0.500 0 ==> 1
- node_21 --> node_20 6 1 0.500 2 --> 1
- 7 1 0.500 2 --> 1
- 8 1 1.000 2 ==> 1
- node_20 --> node_19 10 1 1.000 2 ==> 1
- node_19 --> node_18 9 1 1.000 2 ==> 1
- node_17 --> node_16 1 1 0.500 1 ==> 2
- 2 1 0.500 1 ==> 2
- node_16 --> node_15 14 1 0.500 1 --> 0
- node_15 --> H008 m005 c011 12 1 0.333 2 ==> 1
- node_16 --> H014 m003 c002 11 1 0.333 2 --> 1
- node_17 --> H007 m028 c015 11 1 0.333 2 --> 1
- node_18 --> H013 m010 c004 12 1 0.333 2 ==> 1
- node_19 --> H005 m010 c004 11 1 0.333 2 ==> 1
- node_22 --> H002 m003 c006 6 1 0.500 2 --> 1
- 7 1 0.500 2 --> 1
- node_24 --> H006 m001 c003 5 1 1.000 2 ==> 1
- node_24 --> node_23 3 1 1.000 2 ==> 1
- node_23 --> H010 m002 c013 4 1 1.000 2 ==> 1
- node_23 --> H009 m003 c006 12 1 0.333 2 ==> 1
-
-Tree number 59:
-
-Branch lengths and linkages for tree #59
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 24 root 0 0 0
- 23 24 1 1 1
- 21 23 3 3 3
- 20 21 3 3 3
- 19 20 1 1 1
- 18 19 1 1 1
-H004 m009 c002 (1) 18 0 0 0
- 17 18 0 0 1
- 16 17 3 3 3
-H008 m005 c011 (4) 16 1 0 1
- 15 16 0 0 1
-H014 m003 c002 (10) 15 1 1 1
-H012 m002 c004 (13) 15 0 0 0
-H013 m010 c004 (11) 17 1 0 1
-H007 m028 c015 (12) 18 1 1 1
-H005 m010 c004 (3) 19 1 1 1
-H011 m011 c002 (5) 20 0 0 0
-H003 m018 c004 (9) 21 0 0 0
-H006 m001 c003 (2) 23 1 1 1
-H002 m003 c006 (6) 23 2 2 2
- 22 23 1 1 1
-H010 m002 c013 (7) 22 1 1 1
-H009 m003 c006 (8) 22 1 1 1
-H000 ancetre (14) 24 0 0 0
--------------------------------------------------------------------------
-Sum 23
-
-Tree length = 23
-Consistency index (CI) = 0.6087
-Homoplasy index (HI) = 0.3913
-CI excluding uninformative characters = 0.5714
-HI excluding uninformative characters = 0.4286
-Retention index (RI) = 0.8085
-Rescaled consistency index (RC) = 0.4921
-
- /------------------------- H004 m009 c002
- |
- | /------------- H008 m005 c011
- | |
- | /----16 /------ H014 m003 c002
- /----18 | \-----15
- | +----17 \------ H012 m002 c004
- | | |
- | | \------------------- H013 m010 c004
- /-----19 |
- | | \------------------------- H007 m028 c015
- | |
- /----20 \------------------------------- H005 m010 c004
- | |
- /----21 \-------------------------------------- H011 m011 c002
- | |
- | \-------------------------------------------- H003 m018 c004
- |
- +-------------------------------------------------- H006 m001 c003
- /-----23
- | +-------------------------------------------------- H002 m003 c006
- | |
- | | /------ H010 m002 c013
------24 \------------------------------------------22
- | \------ H009 m003 c006
- |
- \--------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_24 --> node_23 13 1 1.000 1 ==> 2
- node_23 --> node_21 1 1 0.500 2 ==> 1
- 2 1 0.500 2 ==> 1
- 14 1 0.500 0 ==> 1
- node_21 --> node_20 6 1 0.500 2 ==> 1
- 7 1 0.500 2 ==> 1
- 8 1 1.000 2 ==> 1
- node_20 --> node_19 10 1 1.000 2 ==> 1
- node_19 --> node_18 9 1 1.000 2 ==> 1
- node_17 --> node_16 1 1 0.500 1 ==> 2
- 2 1 0.500 1 ==> 2
- 14 1 0.500 1 ==> 0
- node_16 --> H008 m005 c011 12 1 0.333 2 --> 1
- node_15 --> H014 m003 c002 11 1 0.333 2 ==> 1
- node_17 --> H013 m010 c004 12 1 0.333 2 --> 1
- node_18 --> H007 m028 c015 11 1 0.333 2 ==> 1
- node_19 --> H005 m010 c004 11 1 0.333 2 ==> 1
- node_23 --> H006 m001 c003 5 1 1.000 2 ==> 1
- node_23 --> H002 m003 c006 6 1 0.500 2 ==> 1
- 7 1 0.500 2 ==> 1
- node_23 --> node_22 3 1 1.000 2 ==> 1
- node_22 --> H010 m002 c013 4 1 1.000 2 ==> 1
- node_22 --> H009 m003 c006 12 1 0.333 2 ==> 1
-
-Tree number 60:
-
-Branch lengths and linkages for tree #60
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 24 root 0 0 0
- 23 24 1 1 1
- 21 23 3 3 3
- 20 21 3 3 3
- 19 20 1 1 1
- 18 19 1 1 1
-H004 m009 c002 (1) 18 0 0 0
- 17 18 0 0 2
- 16 17 2 2 3
- 15 16 1 0 2
-H008 m005 c011 (4) 15 1 1 1
-H012 m002 c004 (13) 15 0 0 0
-H014 m003 c002 (10) 16 1 0 1
-H007 m028 c015 (12) 17 1 0 1
-H013 m010 c004 (11) 18 1 1 1
-H005 m010 c004 (3) 19 1 1 1
-H011 m011 c002 (5) 20 0 0 0
-H003 m018 c004 (9) 21 0 0 0
-H006 m001 c003 (2) 23 1 1 1
-H002 m003 c006 (6) 23 2 2 2
- 22 23 1 1 1
-H010 m002 c013 (7) 22 1 1 1
-H009 m003 c006 (8) 22 1 1 1
-H000 ancetre (14) 24 0 0 0
--------------------------------------------------------------------------
-Sum 23
-
-Tree length = 23
-Consistency index (CI) = 0.6087
-Homoplasy index (HI) = 0.3913
-CI excluding uninformative characters = 0.5714
-HI excluding uninformative characters = 0.4286
-Retention index (RI) = 0.8085
-Rescaled consistency index (RC) = 0.4921
-
- /------------------------- H004 m009 c002
- |
- | /------ H008 m005 c011
- | /-----15
- | | \------ H012 m002 c004
- /----18 /----16
- | | | \------------- H014 m003 c002
- | +----17
- | | \------------------- H007 m028 c015
- /-----19 |
- | | \------------------------- H013 m010 c004
- | |
- /----20 \------------------------------- H005 m010 c004
- | |
- /----21 \-------------------------------------- H011 m011 c002
- | |
- | \-------------------------------------------- H003 m018 c004
- |
- +-------------------------------------------------- H006 m001 c003
- /-----23
- | +-------------------------------------------------- H002 m003 c006
- | |
- | | /------ H010 m002 c013
------24 \------------------------------------------22
- | \------ H009 m003 c006
- |
- \--------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_24 --> node_23 13 1 1.000 1 ==> 2
- node_23 --> node_21 1 1 0.500 2 ==> 1
- 2 1 0.500 2 ==> 1
- 14 1 0.500 0 ==> 1
- node_21 --> node_20 6 1 0.500 2 ==> 1
- 7 1 0.500 2 ==> 1
- 8 1 1.000 2 ==> 1
- node_20 --> node_19 10 1 1.000 2 ==> 1
- node_19 --> node_18 9 1 1.000 2 ==> 1
- node_17 --> node_16 1 1 0.500 1 ==> 2
- 2 1 0.500 1 ==> 2
- node_16 --> node_15 14 1 0.500 1 --> 0
- node_15 --> H008 m005 c011 12 1 0.333 2 ==> 1
- node_16 --> H014 m003 c002 11 1 0.333 2 --> 1
- node_17 --> H007 m028 c015 11 1 0.333 2 --> 1
- node_18 --> H013 m010 c004 12 1 0.333 2 ==> 1
- node_19 --> H005 m010 c004 11 1 0.333 2 ==> 1
- node_23 --> H006 m001 c003 5 1 1.000 2 ==> 1
- node_23 --> H002 m003 c006 6 1 0.500 2 ==> 1
- 7 1 0.500 2 ==> 1
- node_23 --> node_22 3 1 1.000 2 ==> 1
- node_22 --> H010 m002 c013 4 1 1.000 2 ==> 1
- node_22 --> H009 m003 c006 12 1 0.333 2 ==> 1
-
-Tree number 61:
-
-Branch lengths and linkages for tree #61
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 26 root 0 0 0
- 25 26 1 1 1
- 23 25 0 0 3
- 22 23 2 2 2
- 21 22 4 1 4
- 20 21 1 1 2
- 19 20 1 1 1
- 18 19 0 0 1
-H004 m009 c002 (1) 18 0 0 0
- 17 18 0 0 1
- 16 17 3 3 3
-H008 m005 c011 (4) 16 1 0 1
- 15 16 0 0 1
-H014 m003 c002 (10) 15 1 1 1
-H012 m002 c004 (13) 15 0 0 0
-H013 m010 c004 (11) 17 1 0 1
-H007 m028 c015 (12) 19 1 0 1
-H005 m010 c004 (3) 20 1 0 1
-H011 m011 c002 (5) 21 0 0 0
-H002 m003 c006 (6) 22 0 0 3
-H003 m018 c004 (9) 23 3 0 3
-H006 m001 c003 (2) 25 1 1 1
- 24 25 1 1 1
-H010 m002 c013 (7) 24 1 1 1
-H009 m003 c006 (8) 24 1 1 1
-H000 ancetre (14) 26 0 0 0
--------------------------------------------------------------------------
-Sum 24
-
-Tree length = 24
-Consistency index (CI) = 0.5833
-Homoplasy index (HI) = 0.4167
-CI excluding uninformative characters = 0.5455
-HI excluding uninformative characters = 0.4545
-Retention index (RI) = 0.7872
-Rescaled consistency index (RC) = 0.4592
-
- /--------------------- H004 m009 c002
- |
- | /----------- H008 m005 c011
- /---18 |
- | | /---16 /----- H014 m003 c002
- | | | \----15
- | \---17 \----- H012 m002 c004
- /----19 |
- | | \---------------- H013 m010 c004
- | |
- /---20 \-------------------------- H007 m028 c015
- | |
- /---21 \-------------------------------- H005 m010 c004
- | |
- /---22 \------------------------------------- H011 m011 c002
- | |
- /----23 \------------------------------------------ H002 m003 c006
- | |
- | \----------------------------------------------- H003 m018 c004
- |
- /---25----------------------------------------------------- H006 m001 c003
- | |
- | | /----- H010 m002 c013
-----26 \----------------------------------------------24
- | \----- H009 m003 c006
- |
- \---------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_26 --> node_25 13 1 1.000 1 ==> 2
- node_23 --> node_22 6 1 1.000 2 ==> 1
- 7 1 1.000 2 ==> 1
- node_22 --> node_21 1 1 0.333 2 --> 1
- 2 1 0.333 2 --> 1
- 8 1 1.000 2 ==> 1
- 14 1 0.333 0 --> 1
- node_21 --> node_20 10 1 1.000 2 ==> 1
- node_20 --> node_19 9 1 1.000 2 ==> 1
- node_17 --> node_16 1 1 0.333 1 ==> 2
- 2 1 0.333 1 ==> 2
- 14 1 0.333 1 ==> 0
- node_16 --> H008 m005 c011 12 1 0.333 2 --> 1
- node_15 --> H014 m003 c002 11 1 0.333 2 ==> 1
- node_17 --> H013 m010 c004 12 1 0.333 2 --> 1
- node_19 --> H007 m028 c015 11 1 0.333 2 --> 1
- node_20 --> H005 m010 c004 11 1 0.333 2 --> 1
- node_23 --> H003 m018 c004 1 1 0.333 2 --> 1
- 2 1 0.333 2 --> 1
- 14 1 0.333 0 --> 1
- node_25 --> H006 m001 c003 5 1 1.000 2 ==> 1
- node_25 --> node_24 3 1 1.000 2 ==> 1
- node_24 --> H010 m002 c013 4 1 1.000 2 ==> 1
- node_24 --> H009 m003 c006 12 1 0.333 2 ==> 1
-
-Tree number 62:
-
-Branch lengths and linkages for tree #62
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 26 root 0 0 0
- 25 26 1 1 1
- 23 25 0 0 3
- 22 23 2 2 2
- 21 22 4 1 4
- 20 21 1 1 2
- 18 20 1 0 1
-H004 m009 c002 (1) 18 0 0 0
- 17 18 0 0 1
- 16 17 3 3 3
-H008 m005 c011 (4) 16 1 0 1
- 15 16 0 0 1
-H014 m003 c002 (10) 15 1 1 1
-H012 m002 c004 (13) 15 0 0 0
-H013 m010 c004 (11) 17 1 0 1
- 19 20 1 1 1
-H005 m010 c004 (3) 19 0 0 1
-H007 m028 c015 (12) 19 1 0 1
-H011 m011 c002 (5) 21 0 0 0
-H002 m003 c006 (6) 22 0 0 3
-H003 m018 c004 (9) 23 3 0 3
-H006 m001 c003 (2) 25 1 1 1
- 24 25 1 1 1
-H010 m002 c013 (7) 24 1 1 1
-H009 m003 c006 (8) 24 1 1 1
-H000 ancetre (14) 26 0 0 0
--------------------------------------------------------------------------
-Sum 24
-
-Tree length = 24
-Consistency index (CI) = 0.5833
-Homoplasy index (HI) = 0.4167
-CI excluding uninformative characters = 0.5455
-HI excluding uninformative characters = 0.4545
-Retention index (RI) = 0.7872
-Rescaled consistency index (RC) = 0.4592
-
- /----------------------- H004 m009 c002
- |
- | /----------- H008 m005 c011
- /----18 |
- | | /----16 /------ H014 m003 c002
- | | | \---15
- | \----17 \------ H012 m002 c004
- /---20 |
- | | \----------------- H013 m010 c004
- | |
- | | /------ H005 m010 c004
- /----21 \---------------------19
- | | \------ H007 m028 c015
- | |
- /----22 \---------------------------------- H011 m011 c002
- | |
- /----23 \---------------------------------------- H002 m003 c006
- | |
- | \---------------------------------------------- H003 m018 c004
- |
- /---25---------------------------------------------------- H006 m001 c003
- | |
- | | /------ H010 m002 c013
------26 \--------------------------------------------24
- | \------ H009 m003 c006
- |
- \--------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_26 --> node_25 13 1 1.000 1 ==> 2
- node_23 --> node_22 6 1 1.000 2 ==> 1
- 7 1 1.000 2 ==> 1
- node_22 --> node_21 1 1 0.333 2 --> 1
- 2 1 0.333 2 --> 1
- 8 1 1.000 2 ==> 1
- 14 1 0.333 0 --> 1
- node_21 --> node_20 10 1 1.000 2 ==> 1
- node_20 --> node_18 9 1 0.500 2 --> 1
- node_17 --> node_16 1 1 0.333 1 ==> 2
- 2 1 0.333 1 ==> 2
- 14 1 0.333 1 ==> 0
- node_16 --> H008 m005 c011 12 1 0.333 2 --> 1
- node_15 --> H014 m003 c002 11 1 0.500 2 ==> 1
- node_17 --> H013 m010 c004 12 1 0.333 2 --> 1
- node_20 --> node_19 11 1 0.500 2 ==> 1
- node_19 --> H007 m028 c015 9 1 0.500 2 --> 1
- node_23 --> H003 m018 c004 1 1 0.333 2 --> 1
- 2 1 0.333 2 --> 1
- 14 1 0.333 0 --> 1
- node_25 --> H006 m001 c003 5 1 1.000 2 ==> 1
- node_25 --> node_24 3 1 1.000 2 ==> 1
- node_24 --> H010 m002 c013 4 1 1.000 2 ==> 1
- node_24 --> H009 m003 c006 12 1 0.333 2 ==> 1
-
-Tree number 63:
-
-Branch lengths and linkages for tree #63
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 25 root 0 0 0
- 24 25 1 1 1
- 22 24 0 0 3
- 21 22 2 2 2
- 20 21 4 1 4
- 19 20 2 2 2
-H004 m009 c002 (1) 19 0 0 0
- 15 19 1 1 1
-H005 m010 c004 (3) 15 1 1 1
-H007 m028 c015 (12) 15 0 0 0
- 18 19 0 0 1
- 17 18 3 3 3
-H008 m005 c011 (4) 17 1 0 1
- 16 17 0 0 1
-H014 m003 c002 (10) 16 1 1 1
-H012 m002 c004 (13) 16 0 0 0
-H013 m010 c004 (11) 18 1 0 1
-H011 m011 c002 (5) 20 0 0 0
-H002 m003 c006 (6) 21 0 0 3
-H003 m018 c004 (9) 22 3 0 3
-H006 m001 c003 (2) 24 1 1 1
- 23 24 1 1 1
-H010 m002 c013 (7) 23 1 1 1
-H009 m003 c006 (8) 23 1 1 1
-H000 ancetre (14) 25 0 0 0
--------------------------------------------------------------------------
-Sum 24
-
-Tree length = 24
-Consistency index (CI) = 0.5833
-Homoplasy index (HI) = 0.4167
-CI excluding uninformative characters = 0.5455
-HI excluding uninformative characters = 0.4545
-Retention index (RI) = 0.7872
-Rescaled consistency index (RC) = 0.4592
-
- /------------------------- H004 m009 c002
- |
- | /------ H005 m010 c004
- +-----------------15
- | \------ H007 m028 c015
- /----19
- | | /------------- H008 m005 c011
- | | |
- | | /----17 /------ H014 m003 c002
- | | | \-----16
- /-----20 \----18 \------ H012 m002 c004
- | | |
- | | \------------------- H013 m010 c004
- /----21 |
- | | \------------------------------- H011 m011 c002
- | |
- /----22 \-------------------------------------- H002 m003 c006
- | |
- | \-------------------------------------------- H003 m018 c004
- |
- /-----24-------------------------------------------------- H006 m001 c003
- | |
- | | /------ H010 m002 c013
------25 \------------------------------------------23
- | \------ H009 m003 c006
- |
- \--------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_25 --> node_24 13 1 1.000 1 ==> 2
- node_22 --> node_21 6 1 1.000 2 ==> 1
- 7 1 1.000 2 ==> 1
- node_21 --> node_20 1 1 0.333 2 --> 1
- 2 1 0.333 2 --> 1
- 8 1 1.000 2 ==> 1
- 14 1 0.333 0 --> 1
- node_20 --> node_19 9 1 0.500 2 ==> 1
- 10 1 1.000 2 ==> 1
- node_19 --> node_15 11 1 0.500 2 ==> 1
- node_15 --> H005 m010 c004 9 1 0.500 1 ==> 2
- node_18 --> node_17 1 1 0.333 1 ==> 2
- 2 1 0.333 1 ==> 2
- 14 1 0.333 1 ==> 0
- node_17 --> H008 m005 c011 12 1 0.333 2 --> 1
- node_16 --> H014 m003 c002 11 1 0.500 2 ==> 1
- node_18 --> H013 m010 c004 12 1 0.333 2 --> 1
- node_22 --> H003 m018 c004 1 1 0.333 2 --> 1
- 2 1 0.333 2 --> 1
- 14 1 0.333 0 --> 1
- node_24 --> H006 m001 c003 5 1 1.000 2 ==> 1
- node_24 --> node_23 3 1 1.000 2 ==> 1
- node_23 --> H010 m002 c013 4 1 1.000 2 ==> 1
- node_23 --> H009 m003 c006 12 1 0.333 2 ==> 1
-
-Tree number 64:
-
-Branch lengths and linkages for tree #64
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 24 root 0 0 0
- 23 24 1 1 1
- 21 23 0 0 3
- 20 21 2 2 2
- 19 20 1 1 4
- 18 19 2 2 2
- 16 18 3 0 3
-H004 m009 c002 (1) 16 0 0 0
- 15 16 1 1 1
-H005 m010 c004 (3) 15 1 1 1
-H007 m028 c015 (12) 15 0 0 0
-H013 m010 c004 (11) 16 1 1 1
- 17 18 0 0 3
-H008 m005 c011 (4) 17 1 1 1
-H014 m003 c002 (10) 17 1 1 1
-H012 m002 c004 (13) 17 0 0 0
-H011 m011 c002 (5) 19 3 0 3
-H002 m003 c006 (6) 20 0 0 3
-H003 m018 c004 (9) 21 3 0 3
-H006 m001 c003 (2) 23 1 1 1
- 22 23 1 1 1
-H010 m002 c013 (7) 22 1 1 1
-H009 m003 c006 (8) 22 1 1 1
-H000 ancetre (14) 24 0 0 0
--------------------------------------------------------------------------
-Sum 24
-
-Tree length = 24
-Consistency index (CI) = 0.5833
-Homoplasy index (HI) = 0.4167
-CI excluding uninformative characters = 0.5455
-HI excluding uninformative characters = 0.4545
-Retention index (RI) = 0.7872
-Rescaled consistency index (RC) = 0.4592
-
- /-------------- H004 m009 c002
- |
- | /------- H005 m010 c004
- /-----16-----15
- | | \------- H007 m028 c015
- | |
- | \-------------- H013 m010 c004
- /-----18
- | | /------- H008 m005 c011
- | | |
- | \------------17------- H014 m003 c002
- /-----19 |
- | | \------- H012 m002 c004
- | |
- /-----20 \---------------------------- H011 m011 c002
- | |
- /-----21 \----------------------------------- H002 m003 c006
- | |
- | \------------------------------------------ H003 m018 c004
- |
- /-----23------------------------------------------------- H006 m001 c003
- | |
- | | /------- H010 m002 c013
-------24 \----------------------------------------22
- | \------- H009 m003 c006
- |
- \-------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_24 --> node_23 13 1 1.000 1 ==> 2
- node_21 --> node_20 6 1 1.000 2 ==> 1
- 7 1 1.000 2 ==> 1
- node_20 --> node_19 8 1 1.000 2 ==> 1
- node_19 --> node_18 9 1 0.500 2 ==> 1
- 10 1 1.000 2 ==> 1
- node_18 --> node_16 1 1 0.333 2 --> 1
- 2 1 0.333 2 --> 1
- 14 1 0.333 0 --> 1
- node_16 --> node_15 11 1 0.500 2 ==> 1
- node_15 --> H005 m010 c004 9 1 0.500 1 ==> 2
- node_16 --> H013 m010 c004 12 1 0.333 2 ==> 1
- node_17 --> H008 m005 c011 12 1 0.333 2 ==> 1
- node_17 --> H014 m003 c002 11 1 0.500 2 ==> 1
- node_19 --> H011 m011 c002 1 1 0.333 2 --> 1
- 2 1 0.333 2 --> 1
- 14 1 0.333 0 --> 1
- node_21 --> H003 m018 c004 1 1 0.333 2 --> 1
- 2 1 0.333 2 --> 1
- 14 1 0.333 0 --> 1
- node_23 --> H006 m001 c003 5 1 1.000 2 ==> 1
- node_23 --> node_22 3 1 1.000 2 ==> 1
- node_22 --> H010 m002 c013 4 1 1.000 2 ==> 1
- node_22 --> H009 m003 c006 12 1 0.333 2 ==> 1
-
-Tree number 65:
-
-Branch lengths and linkages for tree #65
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 24 root 0 0 0
- 23 24 1 1 1
- 21 23 0 0 3
- 20 21 2 2 2
- 19 20 4 1 4
- 18 19 2 2 2
-H004 m009 c002 (1) 18 0 0 0
- 17 18 1 1 1
-H005 m010 c004 (3) 17 1 1 1
- 16 17 2 2 3
- 15 16 2 1 2
-H008 m005 c011 (4) 15 1 1 1
-H012 m002 c004 (13) 15 0 0 0
-H014 m003 c002 (10) 16 0 0 0
-H007 m028 c015 (12) 17 0 0 0
-H013 m010 c004 (11) 18 1 1 1
-H011 m011 c002 (5) 19 0 0 0
-H002 m003 c006 (6) 20 0 0 3
-H003 m018 c004 (9) 21 3 0 3
-H006 m001 c003 (2) 23 1 1 1
- 22 23 1 1 1
-H010 m002 c013 (7) 22 1 1 1
-H009 m003 c006 (8) 22 1 1 1
-H000 ancetre (14) 24 0 0 0
--------------------------------------------------------------------------
-Sum 24
-
-Tree length = 24
-Consistency index (CI) = 0.5833
-Homoplasy index (HI) = 0.4167
-CI excluding uninformative characters = 0.5455
-HI excluding uninformative characters = 0.4545
-Retention index (RI) = 0.7872
-Rescaled consistency index (RC) = 0.4592
-
- /------------------------- H004 m009 c002
- |
- | /------------------- H005 m010 c004
- | |
- | | /------ H008 m005 c011
- | | /-----15
- /----18----17 | \------ H012 m002 c004
- | | +----16
- | | | \------------- H014 m003 c002
- | | |
- /-----19 | \------------------- H007 m028 c015
- | | |
- | | \------------------------- H013 m010 c004
- /----20 |
- | | \------------------------------- H011 m011 c002
- | |
- /----21 \-------------------------------------- H002 m003 c006
- | |
- | \-------------------------------------------- H003 m018 c004
- |
- /-----23-------------------------------------------------- H006 m001 c003
- | |
- | | /------ H010 m002 c013
------24 \------------------------------------------22
- | \------ H009 m003 c006
- |
- \--------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_24 --> node_23 13 1 1.000 1 ==> 2
- node_21 --> node_20 6 1 1.000 2 ==> 1
- 7 1 1.000 2 ==> 1
- node_20 --> node_19 1 1 0.333 2 --> 1
- 2 1 0.333 2 --> 1
- 8 1 1.000 2 ==> 1
- 14 1 0.333 0 --> 1
- node_19 --> node_18 9 1 0.500 2 ==> 1
- 10 1 1.000 2 ==> 1
- node_18 --> node_17 11 1 0.500 2 ==> 1
- node_17 --> H005 m010 c004 9 1 0.500 1 ==> 2
- node_17 --> node_16 1 1 0.333 1 ==> 2
- 2 1 0.333 1 ==> 2
- node_16 --> node_15 11 1 0.500 1 ==> 2
- 14 1 0.333 1 --> 0
- node_15 --> H008 m005 c011 12 1 0.333 2 ==> 1
- node_18 --> H013 m010 c004 12 1 0.333 2 ==> 1
- node_21 --> H003 m018 c004 1 1 0.333 2 --> 1
- 2 1 0.333 2 --> 1
- 14 1 0.333 0 --> 1
- node_23 --> H006 m001 c003 5 1 1.000 2 ==> 1
- node_23 --> node_22 3 1 1.000 2 ==> 1
- node_22 --> H010 m002 c013 4 1 1.000 2 ==> 1
- node_22 --> H009 m003 c006 12 1 0.333 2 ==> 1
-
-Tree number 66:
-
-Branch lengths and linkages for tree #66
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 25 root 0 0 0
- 24 25 1 1 1
- 22 24 0 0 3
- 21 22 2 2 2
- 20 21 4 1 4
- 19 20 2 2 2
-H004 m009 c002 (1) 19 0 0 0
- 18 19 0 0 1
- 15 18 1 0 1
-H005 m010 c004 (3) 15 1 1 1
-H007 m028 c015 (12) 15 0 0 0
- 17 18 2 2 3
- 16 17 1 0 2
-H008 m005 c011 (4) 16 1 1 1
-H012 m002 c004 (13) 16 0 0 0
-H014 m003 c002 (10) 17 1 0 1
-H013 m010 c004 (11) 19 1 1 1
-H011 m011 c002 (5) 20 0 0 0
-H002 m003 c006 (6) 21 0 0 3
-H003 m018 c004 (9) 22 3 0 3
-H006 m001 c003 (2) 24 1 1 1
- 23 24 1 1 1
-H010 m002 c013 (7) 23 1 1 1
-H009 m003 c006 (8) 23 1 1 1
-H000 ancetre (14) 25 0 0 0
--------------------------------------------------------------------------
-Sum 24
-
-Tree length = 24
-Consistency index (CI) = 0.5833
-Homoplasy index (HI) = 0.4167
-CI excluding uninformative characters = 0.5455
-HI excluding uninformative characters = 0.4545
-Retention index (RI) = 0.7872
-Rescaled consistency index (RC) = 0.4592
-
- /------------------------- H004 m009 c002
- |
- | /------ H005 m010 c004
- | /-----------15
- | | \------ H007 m028 c015
- | |
- /----19----18 /------ H008 m005 c011
- | | | /-----16
- | | | | \------ H012 m002 c004
- | | \----17
- /-----20 | \------------- H014 m003 c002
- | | |
- | | \------------------------- H013 m010 c004
- /----21 |
- | | \------------------------------- H011 m011 c002
- | |
- /----22 \-------------------------------------- H002 m003 c006
- | |
- | \-------------------------------------------- H003 m018 c004
- |
- /-----24-------------------------------------------------- H006 m001 c003
- | |
- | | /------ H010 m002 c013
------25 \------------------------------------------23
- | \------ H009 m003 c006
- |
- \--------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_25 --> node_24 13 1 1.000 1 ==> 2
- node_22 --> node_21 6 1 1.000 2 ==> 1
- 7 1 1.000 2 ==> 1
- node_21 --> node_20 1 1 0.333 2 --> 1
- 2 1 0.333 2 --> 1
- 8 1 1.000 2 ==> 1
- 14 1 0.333 0 --> 1
- node_20 --> node_19 9 1 0.500 2 ==> 1
- 10 1 1.000 2 ==> 1
- node_18 --> node_15 11 1 0.500 2 --> 1
- node_15 --> H005 m010 c004 9 1 0.500 1 ==> 2
- node_18 --> node_17 1 1 0.333 1 ==> 2
- 2 1 0.333 1 ==> 2
- node_17 --> node_16 14 1 0.333 1 --> 0
- node_16 --> H008 m005 c011 12 1 0.333 2 ==> 1
- node_17 --> H014 m003 c002 11 1 0.500 2 --> 1
- node_19 --> H013 m010 c004 12 1 0.333 2 ==> 1
- node_22 --> H003 m018 c004 1 1 0.333 2 --> 1
- 2 1 0.333 2 --> 1
- 14 1 0.333 0 --> 1
- node_24 --> H006 m001 c003 5 1 1.000 2 ==> 1
- node_24 --> node_23 3 1 1.000 2 ==> 1
- node_23 --> H010 m002 c013 4 1 1.000 2 ==> 1
- node_23 --> H009 m003 c006 12 1 0.333 2 ==> 1
-
-Tree number 67:
-
-Branch lengths and linkages for tree #67
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 26 root 0 0 0
- 25 26 1 1 1
- 23 25 0 0 3
- 22 23 2 2 2
- 21 22 4 1 4
- 20 21 1 1 2
- 19 20 1 1 1
- 15 19 0 0 1
-H004 m009 c002 (1) 15 0 0 0
-H013 m010 c004 (11) 15 1 1 1
- 18 19 0 0 2
- 17 18 2 2 3
- 16 17 1 0 2
-H008 m005 c011 (4) 16 1 1 1
-H012 m002 c004 (13) 16 0 0 0
-H014 m003 c002 (10) 17 1 0 1
-H007 m028 c015 (12) 18 1 0 1
-H005 m010 c004 (3) 20 1 0 1
-H011 m011 c002 (5) 21 0 0 0
-H002 m003 c006 (6) 22 0 0 3
-H003 m018 c004 (9) 23 3 0 3
-H006 m001 c003 (2) 25 1 1 1
- 24 25 1 1 1
-H010 m002 c013 (7) 24 1 1 1
-H009 m003 c006 (8) 24 1 1 1
-H000 ancetre (14) 26 0 0 0
--------------------------------------------------------------------------
-Sum 24
-
-Tree length = 24
-Consistency index (CI) = 0.5833
-Homoplasy index (HI) = 0.4167
-CI excluding uninformative characters = 0.5455
-HI excluding uninformative characters = 0.4545
-Retention index (RI) = 0.7872
-Rescaled consistency index (RC) = 0.4592
-
- /------ H004 m009 c002
- /---------------15
- | \------ H013 m010 c004
- |
- | /------ H008 m005 c011
- /----19 /---16
- | | | \------ H012 m002 c004
- | | /----17
- | | | \----------- H014 m003 c002
- /---20 \----18
- | | \----------------- H007 m028 c015
- | |
- /----21 \----------------------------- H005 m010 c004
- | |
- /----22 \---------------------------------- H011 m011 c002
- | |
- /----23 \---------------------------------------- H002 m003 c006
- | |
- | \---------------------------------------------- H003 m018 c004
- |
- /---25---------------------------------------------------- H006 m001 c003
- | |
- | | /------ H010 m002 c013
------26 \--------------------------------------------24
- | \------ H009 m003 c006
- |
- \--------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_26 --> node_25 13 1 1.000 1 ==> 2
- node_23 --> node_22 6 1 1.000 2 ==> 1
- 7 1 1.000 2 ==> 1
- node_22 --> node_21 1 1 0.333 2 --> 1
- 2 1 0.333 2 --> 1
- 8 1 1.000 2 ==> 1
- 14 1 0.333 0 --> 1
- node_21 --> node_20 10 1 1.000 2 ==> 1
- node_20 --> node_19 9 1 1.000 2 ==> 1
- node_15 --> H013 m010 c004 12 1 0.333 2 ==> 1
- node_18 --> node_17 1 1 0.333 1 ==> 2
- 2 1 0.333 1 ==> 2
- node_17 --> node_16 14 1 0.333 1 --> 0
- node_16 --> H008 m005 c011 12 1 0.333 2 ==> 1
- node_17 --> H014 m003 c002 11 1 0.333 2 --> 1
- node_18 --> H007 m028 c015 11 1 0.333 2 --> 1
- node_20 --> H005 m010 c004 11 1 0.333 2 --> 1
- node_23 --> H003 m018 c004 1 1 0.333 2 --> 1
- 2 1 0.333 2 --> 1
- 14 1 0.333 0 --> 1
- node_25 --> H006 m001 c003 5 1 1.000 2 ==> 1
- node_25 --> node_24 3 1 1.000 2 ==> 1
- node_24 --> H010 m002 c013 4 1 1.000 2 ==> 1
- node_24 --> H009 m003 c006 12 1 0.333 2 ==> 1
-
-Tree number 68:
-
-Branch lengths and linkages for tree #68
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 26 root 0 0 0
- 25 26 1 1 1
- 23 25 0 0 3
- 22 23 2 2 2
- 21 22 4 1 4
- 20 21 1 1 2
- 15 20 1 0 1
-H004 m009 c002 (1) 15 0 0 0
-H013 m010 c004 (11) 15 1 1 1
- 19 20 1 1 1
-H005 m010 c004 (3) 19 0 0 1
- 18 19 1 0 2
- 17 18 2 2 3
- 16 17 2 1 2
-H008 m005 c011 (4) 16 1 1 1
-H012 m002 c004 (13) 16 0 0 0
-H014 m003 c002 (10) 17 0 0 0
-H007 m028 c015 (12) 18 0 0 0
-H011 m011 c002 (5) 21 0 0 0
-H002 m003 c006 (6) 22 0 0 3
-H003 m018 c004 (9) 23 3 0 3
-H006 m001 c003 (2) 25 1 1 1
- 24 25 1 1 1
-H010 m002 c013 (7) 24 1 1 1
-H009 m003 c006 (8) 24 1 1 1
-H000 ancetre (14) 26 0 0 0
--------------------------------------------------------------------------
-Sum 24
-
-Tree length = 24
-Consistency index (CI) = 0.5833
-Homoplasy index (HI) = 0.4167
-CI excluding uninformative characters = 0.5455
-HI excluding uninformative characters = 0.4545
-Retention index (RI) = 0.7872
-Rescaled consistency index (RC) = 0.4592
-
- /------ H004 m009 c002
- /---------------------15
- | \------ H013 m010 c004
- |
- | /----------------------- H005 m010 c004
- /---20 |
- | | | /------ H008 m005 c011
- | | | /---16
- | \----19 | \------ H012 m002 c004
- | | /----17
- /----21 | | \----------- H014 m003 c002
- | | \----18
- | | \----------------- H007 m028 c015
- /----22 |
- | | \---------------------------------- H011 m011 c002
- | |
- /----23 \---------------------------------------- H002 m003 c006
- | |
- | \---------------------------------------------- H003 m018 c004
- |
- /---25---------------------------------------------------- H006 m001 c003
- | |
- | | /------ H010 m002 c013
------26 \--------------------------------------------24
- | \------ H009 m003 c006
- |
- \--------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_26 --> node_25 13 1 1.000 1 ==> 2
- node_23 --> node_22 6 1 1.000 2 ==> 1
- 7 1 1.000 2 ==> 1
- node_22 --> node_21 1 1 0.333 2 --> 1
- 2 1 0.333 2 --> 1
- 8 1 1.000 2 ==> 1
- 14 1 0.333 0 --> 1
- node_21 --> node_20 10 1 1.000 2 ==> 1
- node_20 --> node_15 9 1 0.500 2 --> 1
- node_15 --> H013 m010 c004 12 1 0.333 2 ==> 1
- node_20 --> node_19 11 1 0.500 2 ==> 1
- node_19 --> node_18 9 1 0.500 2 --> 1
- node_18 --> node_17 1 1 0.333 1 ==> 2
- 2 1 0.333 1 ==> 2
- node_17 --> node_16 11 1 0.500 1 ==> 2
- 14 1 0.333 1 --> 0
- node_16 --> H008 m005 c011 12 1 0.333 2 ==> 1
- node_23 --> H003 m018 c004 1 1 0.333 2 --> 1
- 2 1 0.333 2 --> 1
- 14 1 0.333 0 --> 1
- node_25 --> H006 m001 c003 5 1 1.000 2 ==> 1
- node_25 --> node_24 3 1 1.000 2 ==> 1
- node_24 --> H010 m002 c013 4 1 1.000 2 ==> 1
- node_24 --> H009 m003 c006 12 1 0.333 2 ==> 1
-
-Tree number 69:
-
-Branch lengths and linkages for tree #69
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 26 root 0 0 0
- 25 26 1 1 1
- 23 25 0 0 2
- 22 23 3 3 3
- 21 22 3 1 3
- 20 21 1 1 2
- 19 20 1 1 1
- 15 19 0 0 1
-H004 m009 c002 (1) 15 0 0 0
-H013 m010 c004 (11) 15 1 1 1
- 18 19 0 0 2
- 17 18 2 2 3
- 16 17 1 0 2
-H008 m005 c011 (4) 16 1 1 1
-H012 m002 c004 (13) 16 0 0 0
-H014 m003 c002 (10) 17 1 0 1
-H007 m028 c015 (12) 18 1 0 1
-H005 m010 c004 (3) 20 1 0 1
-H011 m011 c002 (5) 21 0 0 0
-H003 m018 c004 (9) 22 0 0 2
-H002 m003 c006 (6) 23 2 0 2
-H006 m001 c003 (2) 25 1 1 1
- 24 25 1 1 1
-H010 m002 c013 (7) 24 1 1 1
-H009 m003 c006 (8) 24 1 1 1
-H000 ancetre (14) 26 0 0 0
--------------------------------------------------------------------------
-Sum 23
-
-Tree length = 23
-Consistency index (CI) = 0.6087
-Homoplasy index (HI) = 0.3913
-CI excluding uninformative characters = 0.5714
-HI excluding uninformative characters = 0.4286
-Retention index (RI) = 0.8085
-Rescaled consistency index (RC) = 0.4921
-
- /------ H004 m009 c002
- /---------------15
- | \------ H013 m010 c004
- |
- | /------ H008 m005 c011
- /----19 /---16
- | | | \------ H012 m002 c004
- | | /----17
- | | | \----------- H014 m003 c002
- /---20 \----18
- | | \----------------- H007 m028 c015
- | |
- /----21 \----------------------------- H005 m010 c004
- | |
- /----22 \---------------------------------- H011 m011 c002
- | |
- /----23 \---------------------------------------- H003 m018 c004
- | |
- | \---------------------------------------------- H002 m003 c006
- |
- /---25---------------------------------------------------- H006 m001 c003
- | |
- | | /------ H010 m002 c013
------26 \--------------------------------------------24
- | \------ H009 m003 c006
- |
- \--------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_26 --> node_25 13 1 1.000 1 ==> 2
- node_23 --> node_22 1 1 0.500 2 ==> 1
- 2 1 0.500 2 ==> 1
- 14 1 0.500 0 ==> 1
- node_22 --> node_21 6 1 0.500 2 --> 1
- 7 1 0.500 2 --> 1
- 8 1 1.000 2 ==> 1
- node_21 --> node_20 10 1 1.000 2 ==> 1
- node_20 --> node_19 9 1 1.000 2 ==> 1
- node_15 --> H013 m010 c004 12 1 0.333 2 ==> 1
- node_18 --> node_17 1 1 0.500 1 ==> 2
- 2 1 0.500 1 ==> 2
- node_17 --> node_16 14 1 0.500 1 --> 0
- node_16 --> H008 m005 c011 12 1 0.333 2 ==> 1
- node_17 --> H014 m003 c002 11 1 0.333 2 --> 1
- node_18 --> H007 m028 c015 11 1 0.333 2 --> 1
- node_20 --> H005 m010 c004 11 1 0.333 2 --> 1
- node_23 --> H002 m003 c006 6 1 0.500 2 --> 1
- 7 1 0.500 2 --> 1
- node_25 --> H006 m001 c003 5 1 1.000 2 ==> 1
- node_25 --> node_24 3 1 1.000 2 ==> 1
- node_24 --> H010 m002 c013 4 1 1.000 2 ==> 1
- node_24 --> H009 m003 c006 12 1 0.333 2 ==> 1
-
-Tree number 70:
-
-Branch lengths and linkages for tree #70
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 24 root 0 0 0
- 23 24 1 1 1
- 21 23 2 2 2
- 20 21 4 4 4
- 19 20 1 1 1
- 18 19 1 1 1
-H004 m009 c002 (1) 18 0 0 0
- 17 18 0 0 1
- 16 17 3 3 3
-H008 m005 c011 (4) 16 1 0 1
- 15 16 0 0 1
-H014 m003 c002 (10) 15 1 1 1
-H012 m002 c004 (13) 15 0 0 0
-H013 m010 c004 (11) 17 1 0 1
-H007 m028 c015 (12) 18 1 1 1
-H005 m010 c004 (3) 19 1 1 1
-H011 m011 c002 (5) 20 0 0 0
-H002 m003 c006 (6) 21 0 0 0
-H006 m001 c003 (2) 23 1 1 1
- 22 23 1 1 1
-H010 m002 c013 (7) 22 1 1 1
-H009 m003 c006 (8) 22 1 1 1
-H003 m018 c004 (9) 23 3 3 3
-H000 ancetre (14) 24 0 0 0
--------------------------------------------------------------------------
-Sum 24
-
-Tree length = 24
-Consistency index (CI) = 0.5833
-Homoplasy index (HI) = 0.4167
-CI excluding uninformative characters = 0.5455
-HI excluding uninformative characters = 0.4545
-Retention index (RI) = 0.7872
-Rescaled consistency index (RC) = 0.4592
-
- /------------------------- H004 m009 c002
- |
- | /------------- H008 m005 c011
- | |
- | /----16 /------ H014 m003 c002
- /----18 | \-----15
- | +----17 \------ H012 m002 c004
- | | |
- | | \------------------- H013 m010 c004
- /-----19 |
- | | \------------------------- H007 m028 c015
- | |
- /----20 \------------------------------- H005 m010 c004
- | |
- /----21 \-------------------------------------- H011 m011 c002
- | |
- | \-------------------------------------------- H002 m003 c006
- |
- +-------------------------------------------------- H006 m001 c003
- /-----23
- | | /------ H010 m002 c013
- | +------------------------------------------22
- | | \------ H009 m003 c006
------24 |
- | \-------------------------------------------------- H003 m018 c004
- |
- \--------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_24 --> node_23 13 1 1.000 1 ==> 2
- node_23 --> node_21 6 1 1.000 2 ==> 1
- 7 1 1.000 2 ==> 1
- node_21 --> node_20 1 1 0.333 2 ==> 1
- 2 1 0.333 2 ==> 1
- 8 1 1.000 2 ==> 1
- 14 1 0.333 0 ==> 1
- node_20 --> node_19 10 1 1.000 2 ==> 1
- node_19 --> node_18 9 1 1.000 2 ==> 1
- node_17 --> node_16 1 1 0.333 1 ==> 2
- 2 1 0.333 1 ==> 2
- 14 1 0.333 1 ==> 0
- node_16 --> H008 m005 c011 12 1 0.333 2 --> 1
- node_15 --> H014 m003 c002 11 1 0.333 2 ==> 1
- node_17 --> H013 m010 c004 12 1 0.333 2 --> 1
- node_18 --> H007 m028 c015 11 1 0.333 2 ==> 1
- node_19 --> H005 m010 c004 11 1 0.333 2 ==> 1
- node_23 --> H006 m001 c003 5 1 1.000 2 ==> 1
- node_23 --> node_22 3 1 1.000 2 ==> 1
- node_22 --> H010 m002 c013 4 1 1.000 2 ==> 1
- node_22 --> H009 m003 c006 12 1 0.333 2 ==> 1
- node_23 --> H003 m018 c004 1 1 0.333 2 ==> 1
- 2 1 0.333 2 ==> 1
- 14 1 0.333 0 ==> 1
-
-Tree number 71:
-
-Branch lengths and linkages for tree #71
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 26 root 0 0 0
- 25 26 1 1 1
- 23 25 0 0 2
- 22 23 3 3 3
- 21 22 3 1 3
- 20 21 1 1 2
- 19 20 1 1 1
- 18 19 0 0 1
- 15 18 0 0 1
-H004 m009 c002 (1) 15 0 0 0
-H013 m010 c004 (11) 15 1 1 1
- 17 18 2 2 3
- 16 17 1 0 2
-H008 m005 c011 (4) 16 1 1 1
-H012 m002 c004 (13) 16 0 0 0
-H014 m003 c002 (10) 17 1 0 1
-H007 m028 c015 (12) 19 1 0 1
-H005 m010 c004 (3) 20 1 0 1
-H011 m011 c002 (5) 21 0 0 0
-H003 m018 c004 (9) 22 0 0 2
-H002 m003 c006 (6) 23 2 0 2
-H006 m001 c003 (2) 25 1 1 1
- 24 25 1 1 1
-H010 m002 c013 (7) 24 1 1 1
-H009 m003 c006 (8) 24 1 1 1
-H000 ancetre (14) 26 0 0 0
--------------------------------------------------------------------------
-Sum 23
-
-Tree length = 23
-Consistency index (CI) = 0.6087
-Homoplasy index (HI) = 0.3913
-CI excluding uninformative characters = 0.5714
-HI excluding uninformative characters = 0.4286
-Retention index (RI) = 0.8085
-Rescaled consistency index (RC) = 0.4921
-
- /------ H004 m009 c002
- /---------15
- | \------ H013 m010 c004
- |
- /----18 /------ H008 m005 c011
- | | /---16
- | | | \------ H012 m002 c004
- /----19 \----17
- | | \----------- H014 m003 c002
- | |
- /---20 \----------------------- H007 m028 c015
- | |
- /----21 \----------------------------- H005 m010 c004
- | |
- /----22 \---------------------------------- H011 m011 c002
- | |
- /----23 \---------------------------------------- H003 m018 c004
- | |
- | \---------------------------------------------- H002 m003 c006
- |
- /---25---------------------------------------------------- H006 m001 c003
- | |
- | | /------ H010 m002 c013
------26 \--------------------------------------------24
- | \------ H009 m003 c006
- |
- \--------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_26 --> node_25 13 1 1.000 1 ==> 2
- node_23 --> node_22 1 1 0.500 2 ==> 1
- 2 1 0.500 2 ==> 1
- 14 1 0.500 0 ==> 1
- node_22 --> node_21 6 1 0.500 2 --> 1
- 7 1 0.500 2 --> 1
- 8 1 1.000 2 ==> 1
- node_21 --> node_20 10 1 1.000 2 ==> 1
- node_20 --> node_19 9 1 1.000 2 ==> 1
- node_15 --> H013 m010 c004 12 1 0.333 2 ==> 1
- node_18 --> node_17 1 1 0.500 1 ==> 2
- 2 1 0.500 1 ==> 2
- node_17 --> node_16 14 1 0.500 1 --> 0
- node_16 --> H008 m005 c011 12 1 0.333 2 ==> 1
- node_17 --> H014 m003 c002 11 1 0.333 2 --> 1
- node_19 --> H007 m028 c015 11 1 0.333 2 --> 1
- node_20 --> H005 m010 c004 11 1 0.333 2 --> 1
- node_23 --> H002 m003 c006 6 1 0.500 2 --> 1
- 7 1 0.500 2 --> 1
- node_25 --> H006 m001 c003 5 1 1.000 2 ==> 1
- node_25 --> node_24 3 1 1.000 2 ==> 1
- node_24 --> H010 m002 c013 4 1 1.000 2 ==> 1
- node_24 --> H009 m003 c006 12 1 0.333 2 ==> 1
-
-Tree number 72:
-
-Branch lengths and linkages for tree #72
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 24 root 0 0 0
- 23 24 1 1 1
- 21 23 2 2 2
- 20 21 4 4 4
- 19 20 1 1 1
- 18 19 1 1 1
-H004 m009 c002 (1) 18 0 0 0
- 17 18 0 0 2
- 16 17 2 2 3
- 15 16 1 0 2
-H008 m005 c011 (4) 15 1 1 1
-H012 m002 c004 (13) 15 0 0 0
-H014 m003 c002 (10) 16 1 0 1
-H007 m028 c015 (12) 17 1 0 1
-H013 m010 c004 (11) 18 1 1 1
-H005 m010 c004 (3) 19 1 1 1
-H011 m011 c002 (5) 20 0 0 0
-H002 m003 c006 (6) 21 0 0 0
-H006 m001 c003 (2) 23 1 1 1
- 22 23 1 1 1
-H010 m002 c013 (7) 22 1 1 1
-H009 m003 c006 (8) 22 1 1 1
-H003 m018 c004 (9) 23 3 3 3
-H000 ancetre (14) 24 0 0 0
--------------------------------------------------------------------------
-Sum 24
-
-Tree length = 24
-Consistency index (CI) = 0.5833
-Homoplasy index (HI) = 0.4167
-CI excluding uninformative characters = 0.5455
-HI excluding uninformative characters = 0.4545
-Retention index (RI) = 0.7872
-Rescaled consistency index (RC) = 0.4592
-
- /------------------------- H004 m009 c002
- |
- | /------ H008 m005 c011
- | /-----15
- | | \------ H012 m002 c004
- /----18 /----16
- | | | \------------- H014 m003 c002
- | +----17
- | | \------------------- H007 m028 c015
- /-----19 |
- | | \------------------------- H013 m010 c004
- | |
- /----20 \------------------------------- H005 m010 c004
- | |
- /----21 \-------------------------------------- H011 m011 c002
- | |
- | \-------------------------------------------- H002 m003 c006
- |
- +-------------------------------------------------- H006 m001 c003
- /-----23
- | | /------ H010 m002 c013
- | +------------------------------------------22
- | | \------ H009 m003 c006
------24 |
- | \-------------------------------------------------- H003 m018 c004
- |
- \--------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_24 --> node_23 13 1 1.000 1 ==> 2
- node_23 --> node_21 6 1 1.000 2 ==> 1
- 7 1 1.000 2 ==> 1
- node_21 --> node_20 1 1 0.333 2 ==> 1
- 2 1 0.333 2 ==> 1
- 8 1 1.000 2 ==> 1
- 14 1 0.333 0 ==> 1
- node_20 --> node_19 10 1 1.000 2 ==> 1
- node_19 --> node_18 9 1 1.000 2 ==> 1
- node_17 --> node_16 1 1 0.333 1 ==> 2
- 2 1 0.333 1 ==> 2
- node_16 --> node_15 14 1 0.333 1 --> 0
- node_15 --> H008 m005 c011 12 1 0.333 2 ==> 1
- node_16 --> H014 m003 c002 11 1 0.333 2 --> 1
- node_17 --> H007 m028 c015 11 1 0.333 2 --> 1
- node_18 --> H013 m010 c004 12 1 0.333 2 ==> 1
- node_19 --> H005 m010 c004 11 1 0.333 2 ==> 1
- node_23 --> H006 m001 c003 5 1 1.000 2 ==> 1
- node_23 --> node_22 3 1 1.000 2 ==> 1
- node_22 --> H010 m002 c013 4 1 1.000 2 ==> 1
- node_22 --> H009 m003 c006 12 1 0.333 2 ==> 1
- node_23 --> H003 m018 c004 1 1 0.333 2 ==> 1
- 2 1 0.333 2 ==> 1
- 14 1 0.333 0 ==> 1
-
-Tree number 73:
-
-Branch lengths and linkages for tree #73
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 24 root 0 0 0
- 23 24 1 1 1
- 21 23 2 2 2
- 20 21 4 4 4
- 19 20 2 2 2
-H004 m009 c002 (1) 19 0 0 0
- 15 19 1 1 1
-H005 m010 c004 (3) 15 1 1 1
-H007 m028 c015 (12) 15 0 0 0
- 18 19 0 0 1
- 17 18 3 3 3
-H008 m005 c011 (4) 17 1 0 1
- 16 17 0 0 1
-H014 m003 c002 (10) 16 1 1 1
-H012 m002 c004 (13) 16 0 0 0
-H013 m010 c004 (11) 18 1 0 1
-H011 m011 c002 (5) 20 0 0 0
-H002 m003 c006 (6) 21 0 0 0
-H006 m001 c003 (2) 23 1 1 1
- 22 23 1 1 1
-H010 m002 c013 (7) 22 1 1 1
-H009 m003 c006 (8) 22 1 1 1
-H003 m018 c004 (9) 23 3 3 3
-H000 ancetre (14) 24 0 0 0
--------------------------------------------------------------------------
-Sum 24
-
-Tree length = 24
-Consistency index (CI) = 0.5833
-Homoplasy index (HI) = 0.4167
-CI excluding uninformative characters = 0.5455
-HI excluding uninformative characters = 0.4545
-Retention index (RI) = 0.7872
-Rescaled consistency index (RC) = 0.4592
-
- /---------------------------- H004 m009 c002
- |
- | /------- H005 m010 c004
- +-------------------15
- | \------- H007 m028 c015
- /-----19
- | | /-------------- H008 m005 c011
- | | |
- | | /-----17 /------- H014 m003 c002
- | | | \-----16
- /-----20 \-----18 \------- H012 m002 c004
- | | |
- | | \--------------------- H013 m010 c004
- /-----21 |
- | | \----------------------------------- H011 m011 c002
- | |
- | \------------------------------------------ H002 m003 c006
- |
- +------------------------------------------------- H006 m001 c003
- /-----23
- | | /------- H010 m002 c013
- | +----------------------------------------22
- | | \------- H009 m003 c006
-------24 |
- | \------------------------------------------------- H003 m018 c004
- |
- \-------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_24 --> node_23 13 1 1.000 1 ==> 2
- node_23 --> node_21 6 1 1.000 2 ==> 1
- 7 1 1.000 2 ==> 1
- node_21 --> node_20 1 1 0.333 2 ==> 1
- 2 1 0.333 2 ==> 1
- 8 1 1.000 2 ==> 1
- 14 1 0.333 0 ==> 1
- node_20 --> node_19 9 1 0.500 2 ==> 1
- 10 1 1.000 2 ==> 1
- node_19 --> node_15 11 1 0.500 2 ==> 1
- node_15 --> H005 m010 c004 9 1 0.500 1 ==> 2
- node_18 --> node_17 1 1 0.333 1 ==> 2
- 2 1 0.333 1 ==> 2
- 14 1 0.333 1 ==> 0
- node_17 --> H008 m005 c011 12 1 0.333 2 --> 1
- node_16 --> H014 m003 c002 11 1 0.500 2 ==> 1
- node_18 --> H013 m010 c004 12 1 0.333 2 --> 1
- node_23 --> H006 m001 c003 5 1 1.000 2 ==> 1
- node_23 --> node_22 3 1 1.000 2 ==> 1
- node_22 --> H010 m002 c013 4 1 1.000 2 ==> 1
- node_22 --> H009 m003 c006 12 1 0.333 2 ==> 1
- node_23 --> H003 m018 c004 1 1 0.333 2 ==> 1
- 2 1 0.333 2 ==> 1
- 14 1 0.333 0 ==> 1
-
-Tree number 74:
-
-Branch lengths and linkages for tree #74
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 24 root 0 0 0
- 23 24 1 1 1
- 21 23 2 2 2
- 20 21 4 4 4
- 19 20 2 2 2
-H004 m009 c002 (1) 19 0 0 0
- 18 19 0 0 1
- 15 18 1 0 1
-H005 m010 c004 (3) 15 1 1 1
-H007 m028 c015 (12) 15 0 0 0
- 17 18 2 2 3
- 16 17 1 0 2
-H008 m005 c011 (4) 16 1 1 1
-H012 m002 c004 (13) 16 0 0 0
-H014 m003 c002 (10) 17 1 0 1
-H013 m010 c004 (11) 19 1 1 1
-H011 m011 c002 (5) 20 0 0 0
-H002 m003 c006 (6) 21 0 0 0
-H006 m001 c003 (2) 23 1 1 1
- 22 23 1 1 1
-H010 m002 c013 (7) 22 1 1 1
-H009 m003 c006 (8) 22 1 1 1
-H003 m018 c004 (9) 23 3 3 3
-H000 ancetre (14) 24 0 0 0
--------------------------------------------------------------------------
-Sum 24
-
-Tree length = 24
-Consistency index (CI) = 0.5833
-Homoplasy index (HI) = 0.4167
-CI excluding uninformative characters = 0.5455
-HI excluding uninformative characters = 0.4545
-Retention index (RI) = 0.7872
-Rescaled consistency index (RC) = 0.4592
-
- /---------------------------- H004 m009 c002
- |
- | /------- H005 m010 c004
- | /------------15
- | | \------- H007 m028 c015
- | |
- /-----19-----18 /------- H008 m005 c011
- | | | /-----16
- | | | | \------- H012 m002 c004
- | | \-----17
- /-----20 | \-------------- H014 m003 c002
- | | |
- | | \---------------------------- H013 m010 c004
- /-----21 |
- | | \----------------------------------- H011 m011 c002
- | |
- | \------------------------------------------ H002 m003 c006
- |
- +------------------------------------------------- H006 m001 c003
- /-----23
- | | /------- H010 m002 c013
- | +----------------------------------------22
- | | \------- H009 m003 c006
-------24 |
- | \------------------------------------------------- H003 m018 c004
- |
- \-------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_24 --> node_23 13 1 1.000 1 ==> 2
- node_23 --> node_21 6 1 1.000 2 ==> 1
- 7 1 1.000 2 ==> 1
- node_21 --> node_20 1 1 0.333 2 ==> 1
- 2 1 0.333 2 ==> 1
- 8 1 1.000 2 ==> 1
- 14 1 0.333 0 ==> 1
- node_20 --> node_19 9 1 0.500 2 ==> 1
- 10 1 1.000 2 ==> 1
- node_18 --> node_15 11 1 0.500 2 --> 1
- node_15 --> H005 m010 c004 9 1 0.500 1 ==> 2
- node_18 --> node_17 1 1 0.333 1 ==> 2
- 2 1 0.333 1 ==> 2
- node_17 --> node_16 14 1 0.333 1 --> 0
- node_16 --> H008 m005 c011 12 1 0.333 2 ==> 1
- node_17 --> H014 m003 c002 11 1 0.500 2 --> 1
- node_19 --> H013 m010 c004 12 1 0.333 2 ==> 1
- node_23 --> H006 m001 c003 5 1 1.000 2 ==> 1
- node_23 --> node_22 3 1 1.000 2 ==> 1
- node_22 --> H010 m002 c013 4 1 1.000 2 ==> 1
- node_22 --> H009 m003 c006 12 1 0.333 2 ==> 1
- node_23 --> H003 m018 c004 1 1 0.333 2 ==> 1
- 2 1 0.333 2 ==> 1
- 14 1 0.333 0 ==> 1
-
-Tree number 75:
-
-Branch lengths and linkages for tree #75
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 23 root 0 0 0
- 22 23 1 1 1
- 20 22 2 2 2
- 19 20 4 4 4
- 18 19 2 2 2
-H004 m009 c002 (1) 18 0 0 0
- 17 18 1 1 1
-H005 m010 c004 (3) 17 1 1 1
- 16 17 2 2 3
- 15 16 2 1 2
-H008 m005 c011 (4) 15 1 1 1
-H012 m002 c004 (13) 15 0 0 0
-H014 m003 c002 (10) 16 0 0 0
-H007 m028 c015 (12) 17 0 0 0
-H013 m010 c004 (11) 18 1 1 1
-H011 m011 c002 (5) 19 0 0 0
-H002 m003 c006 (6) 20 0 0 0
-H006 m001 c003 (2) 22 1 1 1
- 21 22 1 1 1
-H010 m002 c013 (7) 21 1 1 1
-H009 m003 c006 (8) 21 1 1 1
-H003 m018 c004 (9) 22 3 3 3
-H000 ancetre (14) 23 0 0 0
--------------------------------------------------------------------------
-Sum 24
-
-Tree length = 24
-Consistency index (CI) = 0.5833
-Homoplasy index (HI) = 0.4167
-CI excluding uninformative characters = 0.5455
-HI excluding uninformative characters = 0.4545
-Retention index (RI) = 0.7872
-Rescaled consistency index (RC) = 0.4592
-
- /---------------------------- H004 m009 c002
- |
- | /--------------------- H005 m010 c004
- | |
- | | /------- H008 m005 c011
- | | /-----15
- /-----18-----17 | \------- H012 m002 c004
- | | +-----16
- | | | \-------------- H014 m003 c002
- | | |
- /-----19 | \--------------------- H007 m028 c015
- | | |
- | | \---------------------------- H013 m010 c004
- /-----20 |
- | | \----------------------------------- H011 m011 c002
- | |
- | \------------------------------------------ H002 m003 c006
- |
- +------------------------------------------------- H006 m001 c003
- /-----22
- | | /------- H010 m002 c013
- | +----------------------------------------21
- | | \------- H009 m003 c006
-------23 |
- | \------------------------------------------------- H003 m018 c004
- |
- \-------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_23 --> node_22 13 1 1.000 1 ==> 2
- node_22 --> node_20 6 1 1.000 2 ==> 1
- 7 1 1.000 2 ==> 1
- node_20 --> node_19 1 1 0.333 2 ==> 1
- 2 1 0.333 2 ==> 1
- 8 1 1.000 2 ==> 1
- 14 1 0.333 0 ==> 1
- node_19 --> node_18 9 1 0.500 2 ==> 1
- 10 1 1.000 2 ==> 1
- node_18 --> node_17 11 1 0.500 2 ==> 1
- node_17 --> H005 m010 c004 9 1 0.500 1 ==> 2
- node_17 --> node_16 1 1 0.333 1 ==> 2
- 2 1 0.333 1 ==> 2
- node_16 --> node_15 11 1 0.500 1 ==> 2
- 14 1 0.333 1 --> 0
- node_15 --> H008 m005 c011 12 1 0.333 2 ==> 1
- node_18 --> H013 m010 c004 12 1 0.333 2 ==> 1
- node_22 --> H006 m001 c003 5 1 1.000 2 ==> 1
- node_22 --> node_21 3 1 1.000 2 ==> 1
- node_21 --> H010 m002 c013 4 1 1.000 2 ==> 1
- node_21 --> H009 m003 c006 12 1 0.333 2 ==> 1
- node_22 --> H003 m018 c004 1 1 0.333 2 ==> 1
- 2 1 0.333 2 ==> 1
- 14 1 0.333 0 ==> 1
-
-Tree number 76:
-
-Branch lengths and linkages for tree #76
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 25 root 0 0 0
- 24 25 1 1 1
- 22 24 2 2 2
- 21 22 4 4 4
- 20 21 1 1 2
- 15 20 1 0 1
-H004 m009 c002 (1) 15 0 0 0
-H013 m010 c004 (11) 15 1 1 1
- 19 20 1 1 1
-H005 m010 c004 (3) 19 0 0 1
- 18 19 1 0 2
- 17 18 2 2 3
- 16 17 2 1 2
-H008 m005 c011 (4) 16 1 1 1
-H012 m002 c004 (13) 16 0 0 0
-H014 m003 c002 (10) 17 0 0 0
-H007 m028 c015 (12) 18 0 0 0
-H011 m011 c002 (5) 21 0 0 0
-H002 m003 c006 (6) 22 0 0 0
-H006 m001 c003 (2) 24 1 1 1
- 23 24 1 1 1
-H010 m002 c013 (7) 23 1 1 1
-H009 m003 c006 (8) 23 1 1 1
-H003 m018 c004 (9) 24 3 3 3
-H000 ancetre (14) 25 0 0 0
--------------------------------------------------------------------------
-Sum 24
-
-Tree length = 24
-Consistency index (CI) = 0.5833
-Homoplasy index (HI) = 0.4167
-CI excluding uninformative characters = 0.5455
-HI excluding uninformative characters = 0.4545
-Retention index (RI) = 0.7872
-Rescaled consistency index (RC) = 0.4592
-
- /------ H004 m009 c002
- /-----------------------15
- | \------ H013 m010 c004
- |
- | /------------------------- H005 m010 c004
- /-----20 |
- | | | /------ H008 m005 c011
- | | | /-----16
- | \----19 | \------ H012 m002 c004
- | | /----17
- /----21 | | \------------- H014 m003 c002
- | | \----18
- | | \------------------- H007 m028 c015
- /----22 |
- | | \-------------------------------------- H011 m011 c002
- | |
- | \-------------------------------------------- H002 m003 c006
- |
- +-------------------------------------------------- H006 m001 c003
- /-----24
- | | /------ H010 m002 c013
- | +------------------------------------------23
- | | \------ H009 m003 c006
------25 |
- | \-------------------------------------------------- H003 m018 c004
- |
- \--------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_25 --> node_24 13 1 1.000 1 ==> 2
- node_24 --> node_22 6 1 1.000 2 ==> 1
- 7 1 1.000 2 ==> 1
- node_22 --> node_21 1 1 0.333 2 ==> 1
- 2 1 0.333 2 ==> 1
- 8 1 1.000 2 ==> 1
- 14 1 0.333 0 ==> 1
- node_21 --> node_20 10 1 1.000 2 ==> 1
- node_20 --> node_15 9 1 0.500 2 --> 1
- node_15 --> H013 m010 c004 12 1 0.333 2 ==> 1
- node_20 --> node_19 11 1 0.500 2 ==> 1
- node_19 --> node_18 9 1 0.500 2 --> 1
- node_18 --> node_17 1 1 0.333 1 ==> 2
- 2 1 0.333 1 ==> 2
- node_17 --> node_16 11 1 0.500 1 ==> 2
- 14 1 0.333 1 --> 0
- node_16 --> H008 m005 c011 12 1 0.333 2 ==> 1
- node_24 --> H006 m001 c003 5 1 1.000 2 ==> 1
- node_24 --> node_23 3 1 1.000 2 ==> 1
- node_23 --> H010 m002 c013 4 1 1.000 2 ==> 1
- node_23 --> H009 m003 c006 12 1 0.333 2 ==> 1
- node_24 --> H003 m018 c004 1 1 0.333 2 ==> 1
- 2 1 0.333 2 ==> 1
- 14 1 0.333 0 ==> 1
-
-Tree number 77:
-
-Branch lengths and linkages for tree #77
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 25 root 0 0 0
- 24 25 1 1 1
- 22 24 2 2 2
- 21 22 4 4 4
- 20 21 1 1 2
- 18 20 1 0 1
-H004 m009 c002 (1) 18 0 0 0
- 17 18 0 0 1
- 16 17 3 3 3
-H008 m005 c011 (4) 16 1 0 1
- 15 16 0 0 1
-H014 m003 c002 (10) 15 1 1 1
-H012 m002 c004 (13) 15 0 0 0
-H013 m010 c004 (11) 17 1 0 1
- 19 20 1 1 1
-H005 m010 c004 (3) 19 0 0 1
-H007 m028 c015 (12) 19 1 0 1
-H011 m011 c002 (5) 21 0 0 0
-H002 m003 c006 (6) 22 0 0 0
-H006 m001 c003 (2) 24 1 1 1
- 23 24 1 1 1
-H010 m002 c013 (7) 23 1 1 1
-H009 m003 c006 (8) 23 1 1 1
-H003 m018 c004 (9) 24 3 3 3
-H000 ancetre (14) 25 0 0 0
--------------------------------------------------------------------------
-Sum 24
-
-Tree length = 24
-Consistency index (CI) = 0.5833
-Homoplasy index (HI) = 0.4167
-CI excluding uninformative characters = 0.5455
-HI excluding uninformative characters = 0.4545
-Retention index (RI) = 0.7872
-Rescaled consistency index (RC) = 0.4592
-
- /------------------------- H004 m009 c002
- |
- | /------------- H008 m005 c011
- /----18 |
- | | /----16 /------ H014 m003 c002
- | | | \-----15
- | \----17 \------ H012 m002 c004
- /-----20 |
- | | \------------------- H013 m010 c004
- | |
- | | /------ H005 m010 c004
- /----21 \-----------------------19
- | | \------ H007 m028 c015
- | |
- /----22 \-------------------------------------- H011 m011 c002
- | |
- | \-------------------------------------------- H002 m003 c006
- |
- +-------------------------------------------------- H006 m001 c003
- /-----24
- | | /------ H010 m002 c013
- | +------------------------------------------23
- | | \------ H009 m003 c006
------25 |
- | \-------------------------------------------------- H003 m018 c004
- |
- \--------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_25 --> node_24 13 1 1.000 1 ==> 2
- node_24 --> node_22 6 1 1.000 2 ==> 1
- 7 1 1.000 2 ==> 1
- node_22 --> node_21 1 1 0.333 2 ==> 1
- 2 1 0.333 2 ==> 1
- 8 1 1.000 2 ==> 1
- 14 1 0.333 0 ==> 1
- node_21 --> node_20 10 1 1.000 2 ==> 1
- node_20 --> node_18 9 1 0.500 2 --> 1
- node_17 --> node_16 1 1 0.333 1 ==> 2
- 2 1 0.333 1 ==> 2
- 14 1 0.333 1 ==> 0
- node_16 --> H008 m005 c011 12 1 0.333 2 --> 1
- node_15 --> H014 m003 c002 11 1 0.500 2 ==> 1
- node_17 --> H013 m010 c004 12 1 0.333 2 --> 1
- node_20 --> node_19 11 1 0.500 2 ==> 1
- node_19 --> H007 m028 c015 9 1 0.500 2 --> 1
- node_24 --> H006 m001 c003 5 1 1.000 2 ==> 1
- node_24 --> node_23 3 1 1.000 2 ==> 1
- node_23 --> H010 m002 c013 4 1 1.000 2 ==> 1
- node_23 --> H009 m003 c006 12 1 0.333 2 ==> 1
- node_24 --> H003 m018 c004 1 1 0.333 2 ==> 1
- 2 1 0.333 2 ==> 1
- 14 1 0.333 0 ==> 1
-
-Tree number 78:
-
-Branch lengths and linkages for tree #78
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 25 root 0 0 0
- 24 25 1 1 1
- 22 24 3 3 3
- 21 22 3 3 3
- 20 21 1 1 2
- 18 20 1 0 1
-H004 m009 c002 (1) 18 0 0 0
- 17 18 0 0 1
- 16 17 3 3 3
-H008 m005 c011 (4) 16 1 0 1
- 15 16 0 0 1
-H014 m003 c002 (10) 15 1 1 1
-H012 m002 c004 (13) 15 0 0 0
-H013 m010 c004 (11) 17 1 0 1
- 19 20 1 1 1
-H005 m010 c004 (3) 19 0 0 1
-H007 m028 c015 (12) 19 1 0 1
-H011 m011 c002 (5) 21 0 0 0
-H003 m018 c004 (9) 22 0 0 0
-H006 m001 c003 (2) 24 1 1 1
-H002 m003 c006 (6) 24 2 2 2
- 23 24 1 1 1
-H010 m002 c013 (7) 23 1 1 1
-H009 m003 c006 (8) 23 1 1 1
-H000 ancetre (14) 25 0 0 0
--------------------------------------------------------------------------
-Sum 23
-
-Tree length = 23
-Consistency index (CI) = 0.6087
-Homoplasy index (HI) = 0.3913
-CI excluding uninformative characters = 0.5714
-HI excluding uninformative characters = 0.4286
-Retention index (RI) = 0.8085
-Rescaled consistency index (RC) = 0.4921
-
- /------------------------- H004 m009 c002
- |
- | /------------- H008 m005 c011
- /----18 |
- | | /----16 /------ H014 m003 c002
- | | | \-----15
- | \----17 \------ H012 m002 c004
- /-----20 |
- | | \------------------- H013 m010 c004
- | |
- | | /------ H005 m010 c004
- /----21 \-----------------------19
- | | \------ H007 m028 c015
- | |
- /----22 \-------------------------------------- H011 m011 c002
- | |
- | \-------------------------------------------- H003 m018 c004
- |
- +-------------------------------------------------- H006 m001 c003
- /-----24
- | +-------------------------------------------------- H002 m003 c006
- | |
- | | /------ H010 m002 c013
------25 \------------------------------------------23
- | \------ H009 m003 c006
- |
- \--------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_25 --> node_24 13 1 1.000 1 ==> 2
- node_24 --> node_22 1 1 0.500 2 ==> 1
- 2 1 0.500 2 ==> 1
- 14 1 0.500 0 ==> 1
- node_22 --> node_21 6 1 0.500 2 ==> 1
- 7 1 0.500 2 ==> 1
- 8 1 1.000 2 ==> 1
- node_21 --> node_20 10 1 1.000 2 ==> 1
- node_20 --> node_18 9 1 0.500 2 --> 1
- node_17 --> node_16 1 1 0.500 1 ==> 2
- 2 1 0.500 1 ==> 2
- 14 1 0.500 1 ==> 0
- node_16 --> H008 m005 c011 12 1 0.333 2 --> 1
- node_15 --> H014 m003 c002 11 1 0.500 2 ==> 1
- node_17 --> H013 m010 c004 12 1 0.333 2 --> 1
- node_20 --> node_19 11 1 0.500 2 ==> 1
- node_19 --> H007 m028 c015 9 1 0.500 2 --> 1
- node_24 --> H006 m001 c003 5 1 1.000 2 ==> 1
- node_24 --> H002 m003 c006 6 1 0.500 2 ==> 1
- 7 1 0.500 2 ==> 1
- node_24 --> node_23 3 1 1.000 2 ==> 1
- node_23 --> H010 m002 c013 4 1 1.000 2 ==> 1
- node_23 --> H009 m003 c006 12 1 0.333 2 ==> 1
-
-Tree number 79:
-
-Branch lengths and linkages for tree #79
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 24 root 0 0 0
- 23 24 1 1 1
- 21 23 3 3 3
- 20 21 3 3 3
- 19 20 1 1 2
- 18 19 1 1 1
- 15 18 0 0 1
-H004 m009 c002 (1) 15 0 0 0
-H013 m010 c004 (11) 15 1 1 1
- 17 18 2 2 3
- 16 17 1 0 2
-H008 m005 c011 (4) 16 1 1 1
-H012 m002 c004 (13) 16 0 0 0
-H014 m003 c002 (10) 17 1 0 1
-H007 m028 c015 (12) 18 1 0 1
-H005 m010 c004 (3) 19 1 0 1
-H011 m011 c002 (5) 20 0 0 0
-H003 m018 c004 (9) 21 0 0 0
-H006 m001 c003 (2) 23 1 1 1
-H002 m003 c006 (6) 23 2 2 2
- 22 23 1 1 1
-H010 m002 c013 (7) 22 1 1 1
-H009 m003 c006 (8) 22 1 1 1
-H000 ancetre (14) 24 0 0 0
--------------------------------------------------------------------------
-Sum 23
-
-Tree length = 23
-Consistency index (CI) = 0.6087
-Homoplasy index (HI) = 0.3913
-CI excluding uninformative characters = 0.5714
-HI excluding uninformative characters = 0.4286
-Retention index (RI) = 0.8085
-Rescaled consistency index (RC) = 0.4921
-
- /------- H004 m009 c002
- /------------15
- | \------- H013 m010 c004
- |
- | /------- H008 m005 c011
- | /-----16
- /-----18 | \------- H012 m002 c004
- | +-----17
- | | \-------------- H014 m003 c002
- /-----19 |
- | | \--------------------- H007 m028 c015
- | |
- /-----20 \---------------------------- H005 m010 c004
- | |
- /-----21 \----------------------------------- H011 m011 c002
- | |
- | \------------------------------------------ H003 m018 c004
- |
- +------------------------------------------------- H006 m001 c003
- /-----23
- | +------------------------------------------------- H002 m003 c006
- | |
- | | /------- H010 m002 c013
-------24 \----------------------------------------22
- | \------- H009 m003 c006
- |
- \-------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_24 --> node_23 13 1 1.000 1 ==> 2
- node_23 --> node_21 1 1 0.500 2 ==> 1
- 2 1 0.500 2 ==> 1
- 14 1 0.500 0 ==> 1
- node_21 --> node_20 6 1 0.500 2 ==> 1
- 7 1 0.500 2 ==> 1
- 8 1 1.000 2 ==> 1
- node_20 --> node_19 10 1 1.000 2 ==> 1
- node_19 --> node_18 9 1 1.000 2 ==> 1
- node_15 --> H013 m010 c004 12 1 0.333 2 ==> 1
- node_18 --> node_17 1 1 0.500 1 ==> 2
- 2 1 0.500 1 ==> 2
- node_17 --> node_16 14 1 0.500 1 --> 0
- node_16 --> H008 m005 c011 12 1 0.333 2 ==> 1
- node_17 --> H014 m003 c002 11 1 0.333 2 --> 1
- node_18 --> H007 m028 c015 11 1 0.333 2 --> 1
- node_19 --> H005 m010 c004 11 1 0.333 2 --> 1
- node_23 --> H006 m001 c003 5 1 1.000 2 ==> 1
- node_23 --> H002 m003 c006 6 1 0.500 2 ==> 1
- 7 1 0.500 2 ==> 1
- node_23 --> node_22 3 1 1.000 2 ==> 1
- node_22 --> H010 m002 c013 4 1 1.000 2 ==> 1
- node_22 --> H009 m003 c006 12 1 0.333 2 ==> 1
-
-Tree number 80:
-
-Branch lengths and linkages for tree #80
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 26 root 0 0 0
- 25 26 1 1 1
- 23 25 0 0 2
- 22 23 3 3 3
- 21 22 3 1 3
- 20 21 1 1 2
- 15 20 1 0 1
-H004 m009 c002 (1) 15 0 0 0
-H013 m010 c004 (11) 15 1 1 1
- 19 20 1 1 1
-H005 m010 c004 (3) 19 0 0 1
- 18 19 1 0 2
- 17 18 2 2 3
- 16 17 2 1 2
-H008 m005 c011 (4) 16 1 1 1
-H012 m002 c004 (13) 16 0 0 0
-H014 m003 c002 (10) 17 0 0 0
-H007 m028 c015 (12) 18 0 0 0
-H011 m011 c002 (5) 21 0 0 0
-H003 m018 c004 (9) 22 0 0 2
-H002 m003 c006 (6) 23 2 0 2
-H006 m001 c003 (2) 25 1 1 1
- 24 25 1 1 1
-H010 m002 c013 (7) 24 1 1 1
-H009 m003 c006 (8) 24 1 1 1
-H000 ancetre (14) 26 0 0 0
--------------------------------------------------------------------------
-Sum 23
-
-Tree length = 23
-Consistency index (CI) = 0.6087
-Homoplasy index (HI) = 0.3913
-CI excluding uninformative characters = 0.5714
-HI excluding uninformative characters = 0.4286
-Retention index (RI) = 0.8085
-Rescaled consistency index (RC) = 0.4921
-
- /------ H004 m009 c002
- /---------------------15
- | \------ H013 m010 c004
- |
- | /----------------------- H005 m010 c004
- /---20 |
- | | | /------ H008 m005 c011
- | | | /---16
- | \----19 | \------ H012 m002 c004
- | | /----17
- /----21 | | \----------- H014 m003 c002
- | | \----18
- | | \----------------- H007 m028 c015
- /----22 |
- | | \---------------------------------- H011 m011 c002
- | |
- /----23 \---------------------------------------- H003 m018 c004
- | |
- | \---------------------------------------------- H002 m003 c006
- |
- /---25---------------------------------------------------- H006 m001 c003
- | |
- | | /------ H010 m002 c013
------26 \--------------------------------------------24
- | \------ H009 m003 c006
- |
- \--------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_26 --> node_25 13 1 1.000 1 ==> 2
- node_23 --> node_22 1 1 0.500 2 ==> 1
- 2 1 0.500 2 ==> 1
- 14 1 0.500 0 ==> 1
- node_22 --> node_21 6 1 0.500 2 --> 1
- 7 1 0.500 2 --> 1
- 8 1 1.000 2 ==> 1
- node_21 --> node_20 10 1 1.000 2 ==> 1
- node_20 --> node_15 9 1 0.500 2 --> 1
- node_15 --> H013 m010 c004 12 1 0.333 2 ==> 1
- node_20 --> node_19 11 1 0.500 2 ==> 1
- node_19 --> node_18 9 1 0.500 2 --> 1
- node_18 --> node_17 1 1 0.500 1 ==> 2
- 2 1 0.500 1 ==> 2
- node_17 --> node_16 11 1 0.500 1 ==> 2
- 14 1 0.500 1 --> 0
- node_16 --> H008 m005 c011 12 1 0.333 2 ==> 1
- node_23 --> H002 m003 c006 6 1 0.500 2 --> 1
- 7 1 0.500 2 --> 1
- node_25 --> H006 m001 c003 5 1 1.000 2 ==> 1
- node_25 --> node_24 3 1 1.000 2 ==> 1
- node_24 --> H010 m002 c013 4 1 1.000 2 ==> 1
- node_24 --> H009 m003 c006 12 1 0.333 2 ==> 1
-
-Tree number 81:
-
-Branch lengths and linkages for tree #81
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 24 root 0 0 0
- 23 24 1 1 1
- 21 23 3 3 3
- 20 21 3 3 3
- 19 20 2 2 2
-H004 m009 c002 (1) 19 0 0 0
- 18 19 0 0 1
- 15 18 1 0 1
-H005 m010 c004 (3) 15 1 1 1
-H007 m028 c015 (12) 15 0 0 0
- 17 18 2 2 3
- 16 17 1 0 2
-H008 m005 c011 (4) 16 1 1 1
-H012 m002 c004 (13) 16 0 0 0
-H014 m003 c002 (10) 17 1 0 1
-H013 m010 c004 (11) 19 1 1 1
-H011 m011 c002 (5) 20 0 0 0
-H003 m018 c004 (9) 21 0 0 0
-H006 m001 c003 (2) 23 1 1 1
-H002 m003 c006 (6) 23 2 2 2
- 22 23 1 1 1
-H010 m002 c013 (7) 22 1 1 1
-H009 m003 c006 (8) 22 1 1 1
-H000 ancetre (14) 24 0 0 0
--------------------------------------------------------------------------
-Sum 23
-
-Tree length = 23
-Consistency index (CI) = 0.6087
-Homoplasy index (HI) = 0.3913
-CI excluding uninformative characters = 0.5714
-HI excluding uninformative characters = 0.4286
-Retention index (RI) = 0.8085
-Rescaled consistency index (RC) = 0.4921
-
- /---------------------------- H004 m009 c002
- |
- | /------- H005 m010 c004
- | /------------15
- | | \------- H007 m028 c015
- | |
- /-----19-----18 /------- H008 m005 c011
- | | | /-----16
- | | | | \------- H012 m002 c004
- | | \-----17
- /-----20 | \-------------- H014 m003 c002
- | | |
- | | \---------------------------- H013 m010 c004
- /-----21 |
- | | \----------------------------------- H011 m011 c002
- | |
- | \------------------------------------------ H003 m018 c004
- |
- /-----23------------------------------------------------- H006 m001 c003
- | |
- | +------------------------------------------------- H002 m003 c006
- | |
-------24 | /------- H010 m002 c013
- | \----------------------------------------22
- | \------- H009 m003 c006
- |
- \-------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_24 --> node_23 13 1 1.000 1 ==> 2
- node_23 --> node_21 1 1 0.500 2 ==> 1
- 2 1 0.500 2 ==> 1
- 14 1 0.500 0 ==> 1
- node_21 --> node_20 6 1 0.500 2 ==> 1
- 7 1 0.500 2 ==> 1
- 8 1 1.000 2 ==> 1
- node_20 --> node_19 9 1 0.500 2 ==> 1
- 10 1 1.000 2 ==> 1
- node_18 --> node_15 11 1 0.500 2 --> 1
- node_15 --> H005 m010 c004 9 1 0.500 1 ==> 2
- node_18 --> node_17 1 1 0.500 1 ==> 2
- 2 1 0.500 1 ==> 2
- node_17 --> node_16 14 1 0.500 1 --> 0
- node_16 --> H008 m005 c011 12 1 0.333 2 ==> 1
- node_17 --> H014 m003 c002 11 1 0.500 2 --> 1
- node_19 --> H013 m010 c004 12 1 0.333 2 ==> 1
- node_23 --> H006 m001 c003 5 1 1.000 2 ==> 1
- node_23 --> H002 m003 c006 6 1 0.500 2 ==> 1
- 7 1 0.500 2 ==> 1
- node_23 --> node_22 3 1 1.000 2 ==> 1
- node_22 --> H010 m002 c013 4 1 1.000 2 ==> 1
- node_22 --> H009 m003 c006 12 1 0.333 2 ==> 1
-
-Tree number 82:
-
-Branch lengths and linkages for tree #82
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 25 root 0 0 0
- 24 25 1 1 1
- 22 24 3 3 3
- 21 22 3 3 3
- 20 21 1 1 2
- 15 20 1 0 1
-H004 m009 c002 (1) 15 0 0 0
-H013 m010 c004 (11) 15 1 1 1
- 19 20 1 1 1
-H005 m010 c004 (3) 19 0 0 1
- 18 19 1 0 2
- 17 18 2 2 3
- 16 17 2 1 2
-H008 m005 c011 (4) 16 1 1 1
-H012 m002 c004 (13) 16 0 0 0
-H014 m003 c002 (10) 17 0 0 0
-H007 m028 c015 (12) 18 0 0 0
-H011 m011 c002 (5) 21 0 0 0
-H003 m018 c004 (9) 22 0 0 0
-H006 m001 c003 (2) 24 1 1 1
-H002 m003 c006 (6) 24 2 2 2
- 23 24 1 1 1
-H010 m002 c013 (7) 23 1 1 1
-H009 m003 c006 (8) 23 1 1 1
-H000 ancetre (14) 25 0 0 0
--------------------------------------------------------------------------
-Sum 23
-
-Tree length = 23
-Consistency index (CI) = 0.6087
-Homoplasy index (HI) = 0.3913
-CI excluding uninformative characters = 0.5714
-HI excluding uninformative characters = 0.4286
-Retention index (RI) = 0.8085
-Rescaled consistency index (RC) = 0.4921
-
- /------ H004 m009 c002
- /-----------------------15
- | \------ H013 m010 c004
- |
- | /------------------------- H005 m010 c004
- /-----20 |
- | | | /------ H008 m005 c011
- | | | /-----16
- | \----19 | \------ H012 m002 c004
- | | /----17
- /----21 | | \------------- H014 m003 c002
- | | \----18
- | | \------------------- H007 m028 c015
- /----22 |
- | | \-------------------------------------- H011 m011 c002
- | |
- | \-------------------------------------------- H003 m018 c004
- |
- /-----24-------------------------------------------------- H006 m001 c003
- | |
- | +-------------------------------------------------- H002 m003 c006
- | |
------25 | /------ H010 m002 c013
- | \------------------------------------------23
- | \------ H009 m003 c006
- |
- \--------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_25 --> node_24 13 1 1.000 1 ==> 2
- node_24 --> node_22 1 1 0.500 2 ==> 1
- 2 1 0.500 2 ==> 1
- 14 1 0.500 0 ==> 1
- node_22 --> node_21 6 1 0.500 2 ==> 1
- 7 1 0.500 2 ==> 1
- 8 1 1.000 2 ==> 1
- node_21 --> node_20 10 1 1.000 2 ==> 1
- node_20 --> node_15 9 1 0.500 2 --> 1
- node_15 --> H013 m010 c004 12 1 0.333 2 ==> 1
- node_20 --> node_19 11 1 0.500 2 ==> 1
- node_19 --> node_18 9 1 0.500 2 --> 1
- node_18 --> node_17 1 1 0.500 1 ==> 2
- 2 1 0.500 1 ==> 2
- node_17 --> node_16 11 1 0.500 1 ==> 2
- 14 1 0.500 1 --> 0
- node_16 --> H008 m005 c011 12 1 0.333 2 ==> 1
- node_24 --> H006 m001 c003 5 1 1.000 2 ==> 1
- node_24 --> H002 m003 c006 6 1 0.500 2 ==> 1
- 7 1 0.500 2 ==> 1
- node_24 --> node_23 3 1 1.000 2 ==> 1
- node_23 --> H010 m002 c013 4 1 1.000 2 ==> 1
- node_23 --> H009 m003 c006 12 1 0.333 2 ==> 1
-
-Tree number 83:
-
-Branch lengths and linkages for tree #83
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 24 root 0 0 0
- 23 24 1 1 1
- 21 23 3 3 3
- 20 21 3 3 3
- 19 20 2 2 2
-H004 m009 c002 (1) 19 0 0 0
- 15 19 1 1 1
-H005 m010 c004 (3) 15 1 1 1
-H007 m028 c015 (12) 15 0 0 0
- 18 19 0 0 1
- 17 18 3 3 3
-H008 m005 c011 (4) 17 1 0 1
- 16 17 0 0 1
-H014 m003 c002 (10) 16 1 1 1
-H012 m002 c004 (13) 16 0 0 0
-H013 m010 c004 (11) 18 1 0 1
-H011 m011 c002 (5) 20 0 0 0
-H003 m018 c004 (9) 21 0 0 0
-H006 m001 c003 (2) 23 1 1 1
-H002 m003 c006 (6) 23 2 2 2
- 22 23 1 1 1
-H010 m002 c013 (7) 22 1 1 1
-H009 m003 c006 (8) 22 1 1 1
-H000 ancetre (14) 24 0 0 0
--------------------------------------------------------------------------
-Sum 23
-
-Tree length = 23
-Consistency index (CI) = 0.6087
-Homoplasy index (HI) = 0.3913
-CI excluding uninformative characters = 0.5714
-HI excluding uninformative characters = 0.4286
-Retention index (RI) = 0.8085
-Rescaled consistency index (RC) = 0.4921
-
- /---------------------------- H004 m009 c002
- |
- | /------- H005 m010 c004
- +-------------------15
- | \------- H007 m028 c015
- /-----19
- | | /-------------- H008 m005 c011
- | | |
- | | /-----17 /------- H014 m003 c002
- | | | \-----16
- /-----20 \-----18 \------- H012 m002 c004
- | | |
- | | \--------------------- H013 m010 c004
- /-----21 |
- | | \----------------------------------- H011 m011 c002
- | |
- | \------------------------------------------ H003 m018 c004
- |
- /-----23------------------------------------------------- H006 m001 c003
- | |
- | +------------------------------------------------- H002 m003 c006
- | |
-------24 | /------- H010 m002 c013
- | \----------------------------------------22
- | \------- H009 m003 c006
- |
- \-------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_24 --> node_23 13 1 1.000 1 ==> 2
- node_23 --> node_21 1 1 0.500 2 ==> 1
- 2 1 0.500 2 ==> 1
- 14 1 0.500 0 ==> 1
- node_21 --> node_20 6 1 0.500 2 ==> 1
- 7 1 0.500 2 ==> 1
- 8 1 1.000 2 ==> 1
- node_20 --> node_19 9 1 0.500 2 ==> 1
- 10 1 1.000 2 ==> 1
- node_19 --> node_15 11 1 0.500 2 ==> 1
- node_15 --> H005 m010 c004 9 1 0.500 1 ==> 2
- node_18 --> node_17 1 1 0.500 1 ==> 2
- 2 1 0.500 1 ==> 2
- 14 1 0.500 1 ==> 0
- node_17 --> H008 m005 c011 12 1 0.333 2 --> 1
- node_16 --> H014 m003 c002 11 1 0.500 2 ==> 1
- node_18 --> H013 m010 c004 12 1 0.333 2 --> 1
- node_23 --> H006 m001 c003 5 1 1.000 2 ==> 1
- node_23 --> H002 m003 c006 6 1 0.500 2 ==> 1
- 7 1 0.500 2 ==> 1
- node_23 --> node_22 3 1 1.000 2 ==> 1
- node_22 --> H010 m002 c013 4 1 1.000 2 ==> 1
- node_22 --> H009 m003 c006 12 1 0.333 2 ==> 1
-
-Tree number 84:
-
-Branch lengths and linkages for tree #84
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 23 root 0 0 0
- 22 23 1 1 1
- 20 22 3 3 3
- 19 20 3 3 3
- 18 19 2 2 2
-H004 m009 c002 (1) 18 0 0 0
- 17 18 1 1 1
-H005 m010 c004 (3) 17 1 1 1
- 16 17 2 2 3
- 15 16 2 1 2
-H008 m005 c011 (4) 15 1 1 1
-H012 m002 c004 (13) 15 0 0 0
-H014 m003 c002 (10) 16 0 0 0
-H007 m028 c015 (12) 17 0 0 0
-H013 m010 c004 (11) 18 1 1 1
-H011 m011 c002 (5) 19 0 0 0
-H003 m018 c004 (9) 20 0 0 0
-H006 m001 c003 (2) 22 1 1 1
-H002 m003 c006 (6) 22 2 2 2
- 21 22 1 1 1
-H010 m002 c013 (7) 21 1 1 1
-H009 m003 c006 (8) 21 1 1 1
-H000 ancetre (14) 23 0 0 0
--------------------------------------------------------------------------
-Sum 23
-
-Tree length = 23
-Consistency index (CI) = 0.6087
-Homoplasy index (HI) = 0.3913
-CI excluding uninformative characters = 0.5714
-HI excluding uninformative characters = 0.4286
-Retention index (RI) = 0.8085
-Rescaled consistency index (RC) = 0.4921
-
- /---------------------------- H004 m009 c002
- |
- | /--------------------- H005 m010 c004
- | |
- | | /------- H008 m005 c011
- | | /-----15
- /-----18-----17 | \------- H012 m002 c004
- | | +-----16
- | | | \-------------- H014 m003 c002
- | | |
- /-----19 | \--------------------- H007 m028 c015
- | | |
- | | \---------------------------- H013 m010 c004
- /-----20 |
- | | \----------------------------------- H011 m011 c002
- | |
- | \------------------------------------------ H003 m018 c004
- |
- /-----22------------------------------------------------- H006 m001 c003
- | |
- | +------------------------------------------------- H002 m003 c006
- | |
-------23 | /------- H010 m002 c013
- | \----------------------------------------21
- | \------- H009 m003 c006
- |
- \-------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_23 --> node_22 13 1 1.000 1 ==> 2
- node_22 --> node_20 1 1 0.500 2 ==> 1
- 2 1 0.500 2 ==> 1
- 14 1 0.500 0 ==> 1
- node_20 --> node_19 6 1 0.500 2 ==> 1
- 7 1 0.500 2 ==> 1
- 8 1 1.000 2 ==> 1
- node_19 --> node_18 9 1 0.500 2 ==> 1
- 10 1 1.000 2 ==> 1
- node_18 --> node_17 11 1 0.500 2 ==> 1
- node_17 --> H005 m010 c004 9 1 0.500 1 ==> 2
- node_17 --> node_16 1 1 0.500 1 ==> 2
- 2 1 0.500 1 ==> 2
- node_16 --> node_15 11 1 0.500 1 ==> 2
- 14 1 0.500 1 --> 0
- node_15 --> H008 m005 c011 12 1 0.333 2 ==> 1
- node_18 --> H013 m010 c004 12 1 0.333 2 ==> 1
- node_22 --> H006 m001 c003 5 1 1.000 2 ==> 1
- node_22 --> H002 m003 c006 6 1 0.500 2 ==> 1
- 7 1 0.500 2 ==> 1
- node_22 --> node_21 3 1 1.000 2 ==> 1
- node_21 --> H010 m002 c013 4 1 1.000 2 ==> 1
- node_21 --> H009 m003 c006 12 1 0.333 2 ==> 1
-
-Tree number 85:
-
-Branch lengths and linkages for tree #85
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 26 root 0 0 0
- 25 26 1 1 1
- 23 25 0 0 2
- 22 23 3 3 3
- 21 22 3 1 3
- 20 21 1 1 2
- 18 20 1 0 1
-H004 m009 c002 (1) 18 0 0 0
- 17 18 0 0 1
- 16 17 3 3 3
-H008 m005 c011 (4) 16 1 0 1
- 15 16 0 0 1
-H014 m003 c002 (10) 15 1 1 1
-H012 m002 c004 (13) 15 0 0 0
-H013 m010 c004 (11) 17 1 0 1
- 19 20 1 1 1
-H005 m010 c004 (3) 19 0 0 1
-H007 m028 c015 (12) 19 1 0 1
-H011 m011 c002 (5) 21 0 0 0
-H003 m018 c004 (9) 22 0 0 2
-H002 m003 c006 (6) 23 2 0 2
-H006 m001 c003 (2) 25 1 1 1
- 24 25 1 1 1
-H010 m002 c013 (7) 24 1 1 1
-H009 m003 c006 (8) 24 1 1 1
-H000 ancetre (14) 26 0 0 0
--------------------------------------------------------------------------
-Sum 23
-
-Tree length = 23
-Consistency index (CI) = 0.6087
-Homoplasy index (HI) = 0.3913
-CI excluding uninformative characters = 0.5714
-HI excluding uninformative characters = 0.4286
-Retention index (RI) = 0.8085
-Rescaled consistency index (RC) = 0.4921
-
- /----------------------- H004 m009 c002
- |
- | /----------- H008 m005 c011
- /----18 |
- | | /----16 /------ H014 m003 c002
- | | | \---15
- | \----17 \------ H012 m002 c004
- /---20 |
- | | \----------------- H013 m010 c004
- | |
- | | /------ H005 m010 c004
- /----21 \---------------------19
- | | \------ H007 m028 c015
- | |
- /----22 \---------------------------------- H011 m011 c002
- | |
- /----23 \---------------------------------------- H003 m018 c004
- | |
- | \---------------------------------------------- H002 m003 c006
- |
- /---25---------------------------------------------------- H006 m001 c003
- | |
- | | /------ H010 m002 c013
------26 \--------------------------------------------24
- | \------ H009 m003 c006
- |
- \--------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_26 --> node_25 13 1 1.000 1 ==> 2
- node_23 --> node_22 1 1 0.500 2 ==> 1
- 2 1 0.500 2 ==> 1
- 14 1 0.500 0 ==> 1
- node_22 --> node_21 6 1 0.500 2 --> 1
- 7 1 0.500 2 --> 1
- 8 1 1.000 2 ==> 1
- node_21 --> node_20 10 1 1.000 2 ==> 1
- node_20 --> node_18 9 1 0.500 2 --> 1
- node_17 --> node_16 1 1 0.500 1 ==> 2
- 2 1 0.500 1 ==> 2
- 14 1 0.500 1 ==> 0
- node_16 --> H008 m005 c011 12 1 0.333 2 --> 1
- node_15 --> H014 m003 c002 11 1 0.500 2 ==> 1
- node_17 --> H013 m010 c004 12 1 0.333 2 --> 1
- node_20 --> node_19 11 1 0.500 2 ==> 1
- node_19 --> H007 m028 c015 9 1 0.500 2 --> 1
- node_23 --> H002 m003 c006 6 1 0.500 2 --> 1
- 7 1 0.500 2 --> 1
- node_25 --> H006 m001 c003 5 1 1.000 2 ==> 1
- node_25 --> node_24 3 1 1.000 2 ==> 1
- node_24 --> H010 m002 c013 4 1 1.000 2 ==> 1
- node_24 --> H009 m003 c006 12 1 0.333 2 ==> 1
-
-Tree number 86:
-
-Branch lengths and linkages for tree #86
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 25 root 0 0 0
- 24 25 1 1 1
- 22 24 0 0 2
- 21 22 3 3 3
- 20 21 3 1 3
- 19 20 2 2 2
-H004 m009 c002 (1) 19 0 0 0
- 15 19 1 1 1
-H005 m010 c004 (3) 15 1 1 1
-H007 m028 c015 (12) 15 0 0 0
- 18 19 0 0 1
- 17 18 3 3 3
-H008 m005 c011 (4) 17 1 0 1
- 16 17 0 0 1
-H014 m003 c002 (10) 16 1 1 1
-H012 m002 c004 (13) 16 0 0 0
-H013 m010 c004 (11) 18 1 0 1
-H011 m011 c002 (5) 20 0 0 0
-H003 m018 c004 (9) 21 0 0 2
-H002 m003 c006 (6) 22 2 0 2
-H006 m001 c003 (2) 24 1 1 1
- 23 24 1 1 1
-H010 m002 c013 (7) 23 1 1 1
-H009 m003 c006 (8) 23 1 1 1
-H000 ancetre (14) 25 0 0 0
--------------------------------------------------------------------------
-Sum 23
-
-Tree length = 23
-Consistency index (CI) = 0.6087
-Homoplasy index (HI) = 0.3913
-CI excluding uninformative characters = 0.5714
-HI excluding uninformative characters = 0.4286
-Retention index (RI) = 0.8085
-Rescaled consistency index (RC) = 0.4921
-
- /------------------------- H004 m009 c002
- |
- | /------ H005 m010 c004
- +-----------------15
- | \------ H007 m028 c015
- /----19
- | | /------------- H008 m005 c011
- | | |
- | | /----17 /------ H014 m003 c002
- | | | \-----16
- /-----20 \----18 \------ H012 m002 c004
- | | |
- | | \------------------- H013 m010 c004
- /----21 |
- | | \------------------------------- H011 m011 c002
- | |
- /----22 \-------------------------------------- H003 m018 c004
- | |
- | \-------------------------------------------- H002 m003 c006
- |
- /-----24-------------------------------------------------- H006 m001 c003
- | |
- | | /------ H010 m002 c013
------25 \------------------------------------------23
- | \------ H009 m003 c006
- |
- \--------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_25 --> node_24 13 1 1.000 1 ==> 2
- node_22 --> node_21 1 1 0.500 2 ==> 1
- 2 1 0.500 2 ==> 1
- 14 1 0.500 0 ==> 1
- node_21 --> node_20 6 1 0.500 2 --> 1
- 7 1 0.500 2 --> 1
- 8 1 1.000 2 ==> 1
- node_20 --> node_19 9 1 0.500 2 ==> 1
- 10 1 1.000 2 ==> 1
- node_19 --> node_15 11 1 0.500 2 ==> 1
- node_15 --> H005 m010 c004 9 1 0.500 1 ==> 2
- node_18 --> node_17 1 1 0.500 1 ==> 2
- 2 1 0.500 1 ==> 2
- 14 1 0.500 1 ==> 0
- node_17 --> H008 m005 c011 12 1 0.333 2 --> 1
- node_16 --> H014 m003 c002 11 1 0.500 2 ==> 1
- node_18 --> H013 m010 c004 12 1 0.333 2 --> 1
- node_22 --> H002 m003 c006 6 1 0.500 2 --> 1
- 7 1 0.500 2 --> 1
- node_24 --> H006 m001 c003 5 1 1.000 2 ==> 1
- node_24 --> node_23 3 1 1.000 2 ==> 1
- node_23 --> H010 m002 c013 4 1 1.000 2 ==> 1
- node_23 --> H009 m003 c006 12 1 0.333 2 ==> 1
-
-Tree number 87:
-
-Branch lengths and linkages for tree #87
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 25 root 0 0 0
- 24 25 1 1 1
- 22 24 0 0 2
- 21 22 3 3 3
- 20 21 3 1 3
- 19 20 2 2 2
-H004 m009 c002 (1) 19 0 0 0
- 18 19 0 0 1
- 15 18 1 0 1
-H005 m010 c004 (3) 15 1 1 1
-H007 m028 c015 (12) 15 0 0 0
- 17 18 2 2 3
- 16 17 1 0 2
-H008 m005 c011 (4) 16 1 1 1
-H012 m002 c004 (13) 16 0 0 0
-H014 m003 c002 (10) 17 1 0 1
-H013 m010 c004 (11) 19 1 1 1
-H011 m011 c002 (5) 20 0 0 0
-H003 m018 c004 (9) 21 0 0 2
-H002 m003 c006 (6) 22 2 0 2
-H006 m001 c003 (2) 24 1 1 1
- 23 24 1 1 1
-H010 m002 c013 (7) 23 1 1 1
-H009 m003 c006 (8) 23 1 1 1
-H000 ancetre (14) 25 0 0 0
--------------------------------------------------------------------------
-Sum 23
-
-Tree length = 23
-Consistency index (CI) = 0.6087
-Homoplasy index (HI) = 0.3913
-CI excluding uninformative characters = 0.5714
-HI excluding uninformative characters = 0.4286
-Retention index (RI) = 0.8085
-Rescaled consistency index (RC) = 0.4921
-
- /------------------------- H004 m009 c002
- |
- | /------ H005 m010 c004
- | /-----------15
- | | \------ H007 m028 c015
- | |
- /----19----18 /------ H008 m005 c011
- | | | /-----16
- | | | | \------ H012 m002 c004
- | | \----17
- /-----20 | \------------- H014 m003 c002
- | | |
- | | \------------------------- H013 m010 c004
- /----21 |
- | | \------------------------------- H011 m011 c002
- | |
- /----22 \-------------------------------------- H003 m018 c004
- | |
- | \-------------------------------------------- H002 m003 c006
- |
- /-----24-------------------------------------------------- H006 m001 c003
- | |
- | | /------ H010 m002 c013
------25 \------------------------------------------23
- | \------ H009 m003 c006
- |
- \--------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_25 --> node_24 13 1 1.000 1 ==> 2
- node_22 --> node_21 1 1 0.500 2 ==> 1
- 2 1 0.500 2 ==> 1
- 14 1 0.500 0 ==> 1
- node_21 --> node_20 6 1 0.500 2 --> 1
- 7 1 0.500 2 --> 1
- 8 1 1.000 2 ==> 1
- node_20 --> node_19 9 1 0.500 2 ==> 1
- 10 1 1.000 2 ==> 1
- node_18 --> node_15 11 1 0.500 2 --> 1
- node_15 --> H005 m010 c004 9 1 0.500 1 ==> 2
- node_18 --> node_17 1 1 0.500 1 ==> 2
- 2 1 0.500 1 ==> 2
- node_17 --> node_16 14 1 0.500 1 --> 0
- node_16 --> H008 m005 c011 12 1 0.333 2 ==> 1
- node_17 --> H014 m003 c002 11 1 0.500 2 --> 1
- node_19 --> H013 m010 c004 12 1 0.333 2 ==> 1
- node_22 --> H002 m003 c006 6 1 0.500 2 --> 1
- 7 1 0.500 2 --> 1
- node_24 --> H006 m001 c003 5 1 1.000 2 ==> 1
- node_24 --> node_23 3 1 1.000 2 ==> 1
- node_23 --> H010 m002 c013 4 1 1.000 2 ==> 1
- node_23 --> H009 m003 c006 12 1 0.333 2 ==> 1
-
-Tree number 88:
-
-Branch lengths and linkages for tree #88
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 24 root 0 0 0
- 23 24 1 1 1
- 21 23 0 0 2
- 20 21 3 3 3
- 19 20 3 1 3
- 18 19 2 2 2
-H004 m009 c002 (1) 18 0 0 0
- 17 18 1 1 1
-H005 m010 c004 (3) 17 1 1 1
- 16 17 2 2 3
- 15 16 2 1 2
-H008 m005 c011 (4) 15 1 1 1
-H012 m002 c004 (13) 15 0 0 0
-H014 m003 c002 (10) 16 0 0 0
-H007 m028 c015 (12) 17 0 0 0
-H013 m010 c004 (11) 18 1 1 1
-H011 m011 c002 (5) 19 0 0 0
-H003 m018 c004 (9) 20 0 0 2
-H002 m003 c006 (6) 21 2 0 2
-H006 m001 c003 (2) 23 1 1 1
- 22 23 1 1 1
-H010 m002 c013 (7) 22 1 1 1
-H009 m003 c006 (8) 22 1 1 1
-H000 ancetre (14) 24 0 0 0
--------------------------------------------------------------------------
-Sum 23
-
-Tree length = 23
-Consistency index (CI) = 0.6087
-Homoplasy index (HI) = 0.3913
-CI excluding uninformative characters = 0.5714
-HI excluding uninformative characters = 0.4286
-Retention index (RI) = 0.8085
-Rescaled consistency index (RC) = 0.4921
-
- /------------------------- H004 m009 c002
- |
- | /------------------- H005 m010 c004
- | |
- | | /------ H008 m005 c011
- | | /-----15
- /----18----17 | \------ H012 m002 c004
- | | +----16
- | | | \------------- H014 m003 c002
- | | |
- /-----19 | \------------------- H007 m028 c015
- | | |
- | | \------------------------- H013 m010 c004
- /----20 |
- | | \------------------------------- H011 m011 c002
- | |
- /----21 \-------------------------------------- H003 m018 c004
- | |
- | \-------------------------------------------- H002 m003 c006
- |
- /-----23-------------------------------------------------- H006 m001 c003
- | |
- | | /------ H010 m002 c013
------24 \------------------------------------------22
- | \------ H009 m003 c006
- |
- \--------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_24 --> node_23 13 1 1.000 1 ==> 2
- node_21 --> node_20 1 1 0.500 2 ==> 1
- 2 1 0.500 2 ==> 1
- 14 1 0.500 0 ==> 1
- node_20 --> node_19 6 1 0.500 2 --> 1
- 7 1 0.500 2 --> 1
- 8 1 1.000 2 ==> 1
- node_19 --> node_18 9 1 0.500 2 ==> 1
- 10 1 1.000 2 ==> 1
- node_18 --> node_17 11 1 0.500 2 ==> 1
- node_17 --> H005 m010 c004 9 1 0.500 1 ==> 2
- node_17 --> node_16 1 1 0.500 1 ==> 2
- 2 1 0.500 1 ==> 2
- node_16 --> node_15 11 1 0.500 1 ==> 2
- 14 1 0.500 1 --> 0
- node_15 --> H008 m005 c011 12 1 0.333 2 ==> 1
- node_18 --> H013 m010 c004 12 1 0.333 2 ==> 1
- node_21 --> H002 m003 c006 6 1 0.500 2 --> 1
- 7 1 0.500 2 --> 1
- node_23 --> H006 m001 c003 5 1 1.000 2 ==> 1
- node_23 --> node_22 3 1 1.000 2 ==> 1
- node_22 --> H010 m002 c013 4 1 1.000 2 ==> 1
- node_22 --> H009 m003 c006 12 1 0.333 2 ==> 1
-
-Tree number 89:
-
-Branch lengths and linkages for tree #89
-
- Assigned Minimum Maximum
- Connected branch possible possible
- Node to node length length length
--------------------------------------------------------------------------
- 25 root 0 0 0
- 24 25 1 1 1
- 22 24 0 0 2
- 21 22 3 3 3
- 20 21 3 1 3
- 19 20 1 1 2
- 18 19 1 1 1
- 15 18 0 0 1
-H004 m009 c002 (1) 15 0 0 0
-H013 m010 c004 (11) 15 1 1 1
- 17 18 2 2 3
- 16 17 1 0 2
-H008 m005 c011 (4) 16 1 1 1
-H012 m002 c004 (13) 16 0 0 0
-H014 m003 c002 (10) 17 1 0 1
-H007 m028 c015 (12) 18 1 0 1
-H005 m010 c004 (3) 19 1 0 1
-H011 m011 c002 (5) 20 0 0 0
-H003 m018 c004 (9) 21 0 0 2
-H002 m003 c006 (6) 22 2 0 2
-H006 m001 c003 (2) 24 1 1 1
- 23 24 1 1 1
-H010 m002 c013 (7) 23 1 1 1
-H009 m003 c006 (8) 23 1 1 1
-H000 ancetre (14) 25 0 0 0
--------------------------------------------------------------------------
-Sum 23
-
-Tree length = 23
-Consistency index (CI) = 0.6087
-Homoplasy index (HI) = 0.3913
-CI excluding uninformative characters = 0.5714
-HI excluding uninformative characters = 0.4286
-Retention index (RI) = 0.8085
-Rescaled consistency index (RC) = 0.4921
-
- /------ H004 m009 c002
- /-----------15
- | \------ H013 m010 c004
- |
- | /------ H008 m005 c011
- | /-----16
- /----18 | \------ H012 m002 c004
- | +----17
- | | \------------- H014 m003 c002
- /----19 |
- | | \------------------- H007 m028 c015
- | |
- /-----20 \------------------------- H005 m010 c004
- | |
- /----21 \------------------------------- H011 m011 c002
- | |
- /----22 \-------------------------------------- H003 m018 c004
- | |
- | \-------------------------------------------- H002 m003 c006
- |
- /-----24-------------------------------------------------- H006 m001 c003
- | |
- | | /------ H010 m002 c013
------25 \------------------------------------------23
- | \------ H009 m003 c006
- |
- \--------------------------------------------------------- H000 ancetre
-
-Apomorphy lists:
-
- Branch Character Steps CI Change
-------------------------------------------------------------------
- node_25 --> node_24 13 1 1.000 1 ==> 2
- node_22 --> node_21 1 1 0.500 2 ==> 1
- 2 1 0.500 2 ==> 1
- 14 1 0.500 0 ==> 1
- node_21 --> node_20 6 1 0.500 2 --> 1
- 7 1 0.500 2 --> 1
- 8 1 1.000 2 ==> 1
- node_20 --> node_19 10 1 1.000 2 ==> 1
- node_19 --> node_18 9 1 1.000 2 ==> 1
- node_15 --> H013 m010 c004 12 1 0.333 2 ==> 1
- node_18 --> node_17 1 1 0.500 1 ==> 2
- 2 1 0.500 1 ==> 2
- node_17 --> node_16 14 1 0.500 1 --> 0
- node_16 --> H008 m005 c011 12 1 0.333 2 ==> 1
- node_17 --> H014 m003 c002 11 1 0.333 2 --> 1
- node_18 --> H007 m028 c015 11 1 0.333 2 --> 1
- node_19 --> H005 m010 c004 11 1 0.333 2 --> 1
- node_22 --> H002 m003 c006 6 1 0.500 2 --> 1
- 7 1 0.500 2 --> 1
- node_24 --> H006 m001 c003 5 1 1.000 2 ==> 1
- node_24 --> node_23 3 1 1.000 2 ==> 1
- node_23 --> H010 m002 c013 4 1 1.000 2 ==> 1
- node_23 --> H009 m003 c006 12 1 0.333 2 ==> 1
diff --git a/Documentation/example_files/case_control/localisation/test.tree b/Documentation/example_files/case_control/localisation/test.tree
deleted file mode 100644
index edc051ad2c3a3153d308139cccc218952d3a9591..0000000000000000000000000000000000000000
--- a/Documentation/example_files/case_control/localisation/test.tree
+++ /dev/null
@@ -1,121 +0,0 @@
-#NEXUS
-
-Begin trees; [Treefile saved Tue Jul 5 16:13:26 2005]
-[!
->Data file = /home/cbardel/recherche/logiciel/altree/Documentation/example_files/phase/localisation/et_caco.paup
->Heuristic search settings:
-> Optimality criterion = parsimony
-> Character-status summary:
-> 1 character is excluded
-> Of the remaining 13 included characters:
-> All characters are of type 'unord'
-> All characters have equal weight
-> 2 characters are parsimony-uninformative
-> Number of (included) parsimony-informative characters = 11
-> Starting tree(s) obtained via stepwise addition
-> Addition sequence: simple (reference taxon = H004 m009 c002)
-> Number of trees held at each step during stepwise addition = 1
-> Branch-swapping algorithm: tree-bisection-reconnection (TBR)
-> Steepest descent option not in effect
-> 'MaxTrees' setting = 1000 (will not be increased)
-> Branches collapsed (creating polytomies) if maximum branch length is zero
-> 'MulTrees' option in effect
-> Topological constraints not enforced
-> Trees are unrooted
->
->Heuristic search completed
-> Total number of rearrangements tried = 89894
-> Score of best tree(s) found = 21
-> Number of trees retained = 89
-> Time used = <1 sec (CPU time = 0.12 sec)
-]
-tree PAUP_1 = [&R] (((((H004_m009_c002,(H005_m010_c004,H011_m011_c002),H013_m010_c004,H007_m028_c015),H008_m005_c011,H014_m003_c002,H012_m002_c004),H002_m003_c006),H006_m001_c003,(H010_m002_c013,H009_m003_c006),H003_m018_c004),H000_ancetre);
-tree PAUP_2 = [&R] (((((((H004_m009_c002,(H008_m005_c011,H014_m003_c002,H012_m002_c004),H013_m010_c004,H007_m028_c015),H005_m010_c004),H011_m011_c002),H002_m003_c006),H003_m018_c004),H006_m001_c003,(H010_m002_c013,H009_m003_c006)),H000_ancetre);
-tree PAUP_3 = [&R] (((((H004_m009_c002,((H005_m010_c004,H011_m011_c002),H007_m028_c015),H013_m010_c004),H008_m005_c011,H014_m003_c002,H012_m002_c004),H002_m003_c006),H006_m001_c003,(H010_m002_c013,H009_m003_c006),H003_m018_c004),H000_ancetre);
-tree PAUP_4 = [&R] (((((((H004_m009_c002,H013_m010_c004),(H005_m010_c004,H011_m011_c002),H007_m028_c015),H014_m003_c002),H008_m005_c011,H012_m002_c004),H002_m003_c006),H006_m001_c003,(H010_m002_c013,H009_m003_c006),H003_m018_c004),H000_ancetre);
-tree PAUP_5 = [&R] (((((((H004_m009_c002,H013_m010_c004),((H005_m010_c004,H011_m011_c002),H007_m028_c015)),H014_m003_c002),H008_m005_c011,H012_m002_c004),H002_m003_c006),H006_m001_c003,(H010_m002_c013,H009_m003_c006),H003_m018_c004),H000_ancetre);
-tree PAUP_6 = [&R] ((((((H004_m009_c002,H013_m010_c004,H007_m028_c015),(H005_m010_c004,H011_m011_c002)),(H008_m005_c011,H014_m003_c002,H012_m002_c004)),H002_m003_c006),H006_m001_c003,(H010_m002_c013,H009_m003_c006),H003_m018_c004),H000_ancetre);
-tree PAUP_7 = [&R] ((((((H004_m009_c002,H013_m010_c004,H007_m028_c015),H005_m010_c004,H011_m011_c002),(H008_m005_c011,H014_m003_c002,H012_m002_c004)),H002_m003_c006),H006_m001_c003,(H010_m002_c013,H009_m003_c006),H003_m018_c004),H000_ancetre);
-tree PAUP_8 = [&R] ((((((((H004_m009_c002,H013_m010_c004),H007_m028_c015),H005_m010_c004),H011_m011_c002),(H008_m005_c011,H014_m003_c002,H012_m002_c004)),H002_m003_c006),H006_m001_c003,(H010_m002_c013,H009_m003_c006),H003_m018_c004),H000_ancetre);
-tree PAUP_9 = [&R] (((((((H004_m009_c002,((H005_m010_c004,H011_m011_c002),H007_m028_c015)),H013_m010_c004),H008_m005_c011),H014_m003_c002,H012_m002_c004),H002_m003_c006),H006_m001_c003,(H010_m002_c013,H009_m003_c006),H003_m018_c004),H000_ancetre);
-tree PAUP_10 = [&R] (((((H004_m009_c002,((H005_m010_c004,H007_m028_c015),H011_m011_c002),H013_m010_c004),H008_m005_c011,H014_m003_c002,H012_m002_c004),H002_m003_c006),H006_m001_c003,(H010_m002_c013,H009_m003_c006),H003_m018_c004),H000_ancetre);
-tree PAUP_11 = [&R] ((((((((H004_m009_c002,H013_m010_c004),(H005_m010_c004,H011_m011_c002)),H007_m028_c015),H014_m003_c002),H008_m005_c011,H012_m002_c004),H002_m003_c006),H006_m001_c003,(H010_m002_c013,H009_m003_c006),H003_m018_c004),H000_ancetre);
-tree PAUP_12 = [&R] (((((H004_m009_c002,(H005_m010_c004,H007_m028_c015),H011_m011_c002,H013_m010_c004),H008_m005_c011,H014_m003_c002,H012_m002_c004),H002_m003_c006),H006_m001_c003,(H010_m002_c013,H009_m003_c006),H003_m018_c004),H000_ancetre);
-tree PAUP_13 = [&R] (((((((H004_m009_c002,(H008_m005_c011,H014_m003_c002,H012_m002_c004),H013_m010_c004,H007_m028_c015),H005_m010_c004),H011_m011_c002),H003_m018_c004),H002_m003_c006),H006_m001_c003,(H010_m002_c013,H009_m003_c006)),H000_ancetre);
-tree PAUP_14 = [&R] ((((((H004_m009_c002,(H008_m005_c011,H014_m003_c002,H012_m002_c004),H013_m010_c004,H007_m028_c015),H005_m010_c004),H011_m011_c002),H003_m018_c004),H006_m001_c003,H002_m003_c006,(H010_m002_c013,H009_m003_c006)),H000_ancetre);
-tree PAUP_15 = [&R] ((((((H004_m009_c002,(H008_m005_c011,H014_m003_c002,H012_m002_c004),H013_m010_c004,H007_m028_c015),H005_m010_c004),H011_m011_c002),H002_m003_c006),H006_m001_c003,(H010_m002_c013,H009_m003_c006),H003_m018_c004),H000_ancetre);
-tree PAUP_16 = [&R] ((((((H004_m009_c002,(H005_m010_c004,H007_m028_c015),(H008_m005_c011,H014_m003_c002,H012_m002_c004),H013_m010_c004),H011_m011_c002),H002_m003_c006),H003_m018_c004),H006_m001_c003,(H010_m002_c013,H009_m003_c006)),H000_ancetre);
-tree PAUP_17 = [&R] (((((((H004_m009_c002,(((H008_m005_c011,H012_m002_c004),H014_m003_c002),H007_m028_c015),H013_m010_c004),H005_m010_c004),H011_m011_c002),H002_m003_c006),H003_m018_c004),H006_m001_c003,(H010_m002_c013,H009_m003_c006)),H000_ancetre);
-tree PAUP_18 = [&R] (((((((H004_m009_c002,H013_m010_c004,H007_m028_c015),H005_m010_c004),H011_m011_c002),(H008_m005_c011,H014_m003_c002,H012_m002_c004)),H002_m003_c006),H006_m001_c003,(H010_m002_c013,H009_m003_c006),H003_m018_c004),H000_ancetre);
-tree PAUP_19 = [&R] (((((((H004_m009_c002,((H008_m005_c011,(H014_m003_c002,H012_m002_c004)),H013_m010_c004),H007_m028_c015),H005_m010_c004),H011_m011_c002),H002_m003_c006),H003_m018_c004),H006_m001_c003,(H010_m002_c013,H009_m003_c006)),H000_ancetre);
-tree PAUP_20 = [&R] ((((((((H004_m009_c002,H013_m010_c004),((H008_m005_c011,H012_m002_c004),H014_m003_c002),H007_m028_c015),H005_m010_c004),H011_m011_c002),H002_m003_c006),H003_m018_c004),H006_m001_c003,(H010_m002_c013,H009_m003_c006)),H000_ancetre);
-tree PAUP_21 = [&R] ((((((((H004_m009_c002,(H008_m005_c011,H014_m003_c002,H012_m002_c004),H013_m010_c004),H007_m028_c015),H005_m010_c004),H011_m011_c002),H002_m003_c006),H003_m018_c004),H006_m001_c003,(H010_m002_c013,H009_m003_c006)),H000_ancetre);
-tree PAUP_22 = [&R] (((((((H004_m009_c002,(H008_m005_c011,H014_m003_c002,H012_m002_c004),H013_m010_c004),(H005_m010_c004,H007_m028_c015)),H011_m011_c002),H002_m003_c006),H003_m018_c004),H006_m001_c003,(H010_m002_c013,H009_m003_c006)),H000_ancetre);
-tree PAUP_23 = [&R] (((((((((H004_m009_c002,H013_m010_c004),((H008_m005_c011,H012_m002_c004),H014_m003_c002)),H007_m028_c015),H005_m010_c004),H011_m011_c002),H002_m003_c006),H003_m018_c004),H006_m001_c003,(H010_m002_c013,H009_m003_c006)),H000_ancetre);
-tree PAUP_24 = [&R] (((((((H004_m009_c002,(H008_m005_c011,H014_m003_c002,H012_m002_c004),H013_m010_c004),H007_m028_c015),H005_m010_c004),H011_m011_c002),H002_m003_c006),H006_m001_c003,(H010_m002_c013,H009_m003_c006),H003_m018_c004),H000_ancetre);
-tree PAUP_25 = [&R] ((((((H004_m009_c002,H013_m010_c004),((H005_m010_c004,H007_m028_c015),H011_m011_c002)),(H008_m005_c011,H014_m003_c002,H012_m002_c004)),H002_m003_c006),H006_m001_c003,(H010_m002_c013,H009_m003_c006),H003_m018_c004),H000_ancetre);
-tree PAUP_26 = [&R] ((((((H004_m009_c002,(H005_m010_c004,H007_m028_c015),H013_m010_c004),H011_m011_c002),(H008_m005_c011,H014_m003_c002,H012_m002_c004)),H002_m003_c006),H006_m001_c003,(H010_m002_c013,H009_m003_c006),H003_m018_c004),H000_ancetre);
-tree PAUP_27 = [&R] ((((((H004_m009_c002,(H005_m010_c004,H007_m028_c015),H013_m010_c004),(H008_m005_c011,H014_m003_c002,H012_m002_c004)),H011_m011_c002),H002_m003_c006),H006_m001_c003,(H010_m002_c013,H009_m003_c006),H003_m018_c004),H000_ancetre);
-tree PAUP_28 = [&R] (((((((H004_m009_c002,(H008_m005_c011,H014_m003_c002,H012_m002_c004),H013_m010_c004),H007_m028_c015),H005_m010_c004),H011_m011_c002),H003_m018_c004),H006_m001_c003,H002_m003_c006,(H010_m002_c013,H009_m003_c006)),H000_ancetre);
-tree PAUP_29 = [&R] (((((((((H004_m009_c002,H013_m010_c004),H011_m011_c002),H005_m010_c004),H007_m028_c015),H014_m003_c002),H008_m005_c011,H012_m002_c004),H002_m003_c006),H006_m001_c003,(H010_m002_c013,H009_m003_c006),H003_m018_c004),H000_ancetre);
-tree PAUP_30 = [&R] (((((((H004_m009_c002,(H005_m010_c004,H011_m011_c002),H013_m010_c004),H007_m028_c015),H014_m003_c002),H008_m005_c011,H012_m002_c004),H002_m003_c006),H006_m001_c003,(H010_m002_c013,H009_m003_c006),H003_m018_c004),H000_ancetre);
-tree PAUP_31 = [&R] (((((((H004_m009_c002,H011_m011_c002,H013_m010_c004),(H005_m010_c004,H007_m028_c015)),H014_m003_c002),H008_m005_c011,H012_m002_c004),H002_m003_c006),H006_m001_c003,(H010_m002_c013,H009_m003_c006),H003_m018_c004),H000_ancetre);
-tree PAUP_32 = [&R] ((((((((H004_m009_c002,H013_m010_c004),(H005_m010_c004,H007_m028_c015)),H014_m003_c002),H008_m005_c011,H012_m002_c004),H011_m011_c002),H002_m003_c006),H006_m001_c003,(H010_m002_c013,H009_m003_c006),H003_m018_c004),H000_ancetre);
-tree PAUP_33 = [&R] ((((((((H004_m009_c002,H013_m010_c004),((H008_m005_c011,H012_m002_c004),H014_m003_c002)),H007_m028_c015),H005_m010_c004),H011_m011_c002),H002_m003_c006),H006_m001_c003,(H010_m002_c013,H009_m003_c006),H003_m018_c004),H000_ancetre);
-tree PAUP_34 = [&R] ((((((((H004_m009_c002,H013_m010_c004),((H008_m005_c011,H012_m002_c004),H014_m003_c002)),H007_m028_c015),H005_m010_c004),H011_m011_c002),H003_m018_c004),H006_m001_c003,H002_m003_c006,(H010_m002_c013,H009_m003_c006)),H000_ancetre);
-tree PAUP_35 = [&R] (((((((H004_m009_c002,(H005_m010_c004,H011_m011_c002),H007_m028_c015),H013_m010_c004),H008_m005_c011),H014_m003_c002,H012_m002_c004),H002_m003_c006),H006_m001_c003,(H010_m002_c013,H009_m003_c006),H003_m018_c004),H000_ancetre);
-tree PAUP_36 = [&R] ((((((H004_m009_c002,H013_m010_c004),(H005_m010_c004,H007_m028_c015),H011_m011_c002),(H008_m005_c011,H014_m003_c002,H012_m002_c004)),H002_m003_c006),H006_m001_c003,(H010_m002_c013,H009_m003_c006),H003_m018_c004),H000_ancetre);
-tree PAUP_37 = [&R] ((((((H004_m009_c002,(H005_m010_c004,H007_m028_c015),H013_m010_c004),H008_m005_c011,H014_m003_c002,H012_m002_c004),H011_m011_c002),H002_m003_c006),H006_m001_c003,(H010_m002_c013,H009_m003_c006),H003_m018_c004),H000_ancetre);
-tree PAUP_38 = [&R] ((((((((H004_m009_c002,H013_m010_c004),H005_m010_c004,H007_m028_c015),H014_m003_c002),H008_m005_c011,H012_m002_c004),H011_m011_c002),H002_m003_c006),H006_m001_c003,(H010_m002_c013,H009_m003_c006),H003_m018_c004),H000_ancetre);
-tree PAUP_39 = [&R] ((((((((H004_m009_c002,(H005_m010_c004,H007_m028_c015)),H013_m010_c004),H008_m005_c011),H014_m003_c002,H012_m002_c004),H011_m011_c002),H002_m003_c006),H006_m001_c003,(H010_m002_c013,H009_m003_c006),H003_m018_c004),H000_ancetre);
-tree PAUP_40 = [&R] (((((((H004_m009_c002,H013_m010_c004),((H008_m005_c011,H012_m002_c004),H014_m003_c002),H007_m028_c015),H005_m010_c004),H011_m011_c002),H002_m003_c006),H006_m001_c003,(H010_m002_c013,H009_m003_c006),H003_m018_c004),H000_ancetre);
-tree PAUP_41 = [&R] (((((((H004_m009_c002,((H008_m005_c011,(H014_m003_c002,H012_m002_c004)),H013_m010_c004)),H007_m028_c015),H005_m010_c004),H011_m011_c002),H002_m003_c006),H006_m001_c003,(H010_m002_c013,H009_m003_c006),H003_m018_c004),H000_ancetre);
-tree PAUP_42 = [&R] (((((((H004_m009_c002,H013_m010_c004),(((H008_m005_c011,H012_m002_c004),H014_m003_c002),H007_m028_c015)),H005_m010_c004),H011_m011_c002),H002_m003_c006),H006_m001_c003,(H010_m002_c013,H009_m003_c006),H003_m018_c004),H000_ancetre);
-tree PAUP_43 = [&R] (((((((H004_m009_c002,H013_m010_c004),(H005_m010_c004,H007_m028_c015)),H011_m011_c002),(H008_m005_c011,H014_m003_c002,H012_m002_c004)),H002_m003_c006),H006_m001_c003,(H010_m002_c013,H009_m003_c006),H003_m018_c004),H000_ancetre);
-tree PAUP_44 = [&R] (((((((H004_m009_c002,(H005_m010_c004,H007_m028_c015),H011_m011_c002),H013_m010_c004),H008_m005_c011),H014_m003_c002,H012_m002_c004),H002_m003_c006),H006_m001_c003,(H010_m002_c013,H009_m003_c006),H003_m018_c004),H000_ancetre);
-tree PAUP_45 = [&R] (((((((H004_m009_c002,((H005_m010_c004,H007_m028_c015),H011_m011_c002)),H013_m010_c004),H008_m005_c011),H014_m003_c002,H012_m002_c004),H002_m003_c006),H006_m001_c003,(H010_m002_c013,H009_m003_c006),H003_m018_c004),H000_ancetre);
-tree PAUP_46 = [&R] (((((((H004_m009_c002,((H008_m005_c011,(H014_m003_c002,H012_m002_c004)),H013_m010_c004)),H007_m028_c015),H005_m010_c004),H011_m011_c002),H003_m018_c004),H006_m001_c003,H002_m003_c006,(H010_m002_c013,H009_m003_c006)),H000_ancetre);
-tree PAUP_47 = [&R] (((((((H004_m009_c002,H011_m011_c002,H013_m010_c004),H005_m010_c004,H007_m028_c015),H014_m003_c002),H008_m005_c011,H012_m002_c004),H002_m003_c006),H006_m001_c003,(H010_m002_c013,H009_m003_c006),H003_m018_c004),H000_ancetre);
-tree PAUP_48 = [&R] ((((((H004_m009_c002,(H008_m005_c011,H014_m003_c002,H012_m002_c004),H013_m010_c004),(H005_m010_c004,H007_m028_c015)),H011_m011_c002),H002_m003_c006),H006_m001_c003,(H010_m002_c013,H009_m003_c006),H003_m018_c004),H000_ancetre);
-tree PAUP_49 = [&R] ((((((H004_m009_c002,(H008_m005_c011,H014_m003_c002,H012_m002_c004),H013_m010_c004),(H005_m010_c004,H007_m028_c015)),H011_m011_c002),H003_m018_c004),H006_m001_c003,H002_m003_c006,(H010_m002_c013,H009_m003_c006)),H000_ancetre);
-tree PAUP_50 = [&R] (((((((H004_m009_c002,H013_m010_c004),(((H008_m005_c011,H012_m002_c004),H014_m003_c002),H007_m028_c015)),H005_m010_c004),H011_m011_c002),H003_m018_c004),H006_m001_c003,H002_m003_c006,(H010_m002_c013,H009_m003_c006)),H000_ancetre);
-tree PAUP_51 = [&R] (((((H004_m009_c002,(H005_m010_c004,H007_m028_c015),(H008_m005_c011,H014_m003_c002,H012_m002_c004),H013_m010_c004),H011_m011_c002),H002_m003_c006),H006_m001_c003,(H010_m002_c013,H009_m003_c006),H003_m018_c004),H000_ancetre);
-tree PAUP_52 = [&R] (((((H004_m009_c002,(H005_m010_c004,H007_m028_c015),(H008_m005_c011,H014_m003_c002,H012_m002_c004),H013_m010_c004),H011_m011_c002),H003_m018_c004),H006_m001_c003,H002_m003_c006,(H010_m002_c013,H009_m003_c006)),H000_ancetre);
-tree PAUP_53 = [&R] ((((((H004_m009_c002,(H005_m010_c004,H007_m028_c015),(H008_m005_c011,H014_m003_c002,H012_m002_c004),H013_m010_c004),H011_m011_c002),H003_m018_c004),H002_m003_c006),H006_m001_c003,(H010_m002_c013,H009_m003_c006)),H000_ancetre);
-tree PAUP_54 = [&R] ((((((((H004_m009_c002,(H008_m005_c011,H014_m003_c002,H012_m002_c004),H013_m010_c004),H007_m028_c015),H005_m010_c004),H011_m011_c002),H003_m018_c004),H002_m003_c006),H006_m001_c003,(H010_m002_c013,H009_m003_c006)),H000_ancetre);
-tree PAUP_55 = [&R] ((((((((H004_m009_c002,((H008_m005_c011,(H014_m003_c002,H012_m002_c004)),H013_m010_c004)),H007_m028_c015),H005_m010_c004),H011_m011_c002),H003_m018_c004),H002_m003_c006),H006_m001_c003,(H010_m002_c013,H009_m003_c006)),H000_ancetre);
-tree PAUP_56 = [&R] (((((((H004_m009_c002,(H008_m005_c011,H014_m003_c002,H012_m002_c004),H013_m010_c004),(H005_m010_c004,H007_m028_c015)),H011_m011_c002),H003_m018_c004),H002_m003_c006),H006_m001_c003,(H010_m002_c013,H009_m003_c006)),H000_ancetre);
-tree PAUP_57 = [&R] (((((((H004_m009_c002,((H008_m005_c011,(H014_m003_c002,H012_m002_c004)),H013_m010_c004),H007_m028_c015),H005_m010_c004),H011_m011_c002),H003_m018_c004),H002_m003_c006),H006_m001_c003,(H010_m002_c013,H009_m003_c006)),H000_ancetre);
-tree PAUP_58 = [&R] (((((((H004_m009_c002,(((H008_m005_c011,H012_m002_c004),H014_m003_c002),H007_m028_c015),H013_m010_c004),H005_m010_c004),H011_m011_c002),H003_m018_c004),H002_m003_c006),H006_m001_c003,(H010_m002_c013,H009_m003_c006)),H000_ancetre);
-tree PAUP_59 = [&R] ((((((H004_m009_c002,((H008_m005_c011,(H014_m003_c002,H012_m002_c004)),H013_m010_c004),H007_m028_c015),H005_m010_c004),H011_m011_c002),H003_m018_c004),H006_m001_c003,H002_m003_c006,(H010_m002_c013,H009_m003_c006)),H000_ancetre);
-tree PAUP_60 = [&R] ((((((H004_m009_c002,(((H008_m005_c011,H012_m002_c004),H014_m003_c002),H007_m028_c015),H013_m010_c004),H005_m010_c004),H011_m011_c002),H003_m018_c004),H006_m001_c003,H002_m003_c006,(H010_m002_c013,H009_m003_c006)),H000_ancetre);
-tree PAUP_61 = [&R] ((((((((H004_m009_c002,((H008_m005_c011,(H014_m003_c002,H012_m002_c004)),H013_m010_c004)),H007_m028_c015),H005_m010_c004),H011_m011_c002),H002_m003_c006),H003_m018_c004),H006_m001_c003,(H010_m002_c013,H009_m003_c006)),H000_ancetre);
-tree PAUP_62 = [&R] (((((((H004_m009_c002,((H008_m005_c011,(H014_m003_c002,H012_m002_c004)),H013_m010_c004)),(H005_m010_c004,H007_m028_c015)),H011_m011_c002),H002_m003_c006),H003_m018_c004),H006_m001_c003,(H010_m002_c013,H009_m003_c006)),H000_ancetre);
-tree PAUP_63 = [&R] ((((((H004_m009_c002,(H005_m010_c004,H007_m028_c015),((H008_m005_c011,(H014_m003_c002,H012_m002_c004)),H013_m010_c004)),H011_m011_c002),H002_m003_c006),H003_m018_c004),H006_m001_c003,(H010_m002_c013,H009_m003_c006)),H000_ancetre);
-tree PAUP_64 = [&R] (((((((H004_m009_c002,(H005_m010_c004,H007_m028_c015),H013_m010_c004),(H008_m005_c011,H014_m003_c002,H012_m002_c004)),H011_m011_c002),H002_m003_c006),H003_m018_c004),H006_m001_c003,(H010_m002_c013,H009_m003_c006)),H000_ancetre);
-tree PAUP_65 = [&R] ((((((H004_m009_c002,(H005_m010_c004,((H008_m005_c011,H012_m002_c004),H014_m003_c002),H007_m028_c015),H013_m010_c004),H011_m011_c002),H002_m003_c006),H003_m018_c004),H006_m001_c003,(H010_m002_c013,H009_m003_c006)),H000_ancetre);
-tree PAUP_66 = [&R] ((((((H004_m009_c002,((H005_m010_c004,H007_m028_c015),((H008_m005_c011,H012_m002_c004),H014_m003_c002)),H013_m010_c004),H011_m011_c002),H002_m003_c006),H003_m018_c004),H006_m001_c003,(H010_m002_c013,H009_m003_c006)),H000_ancetre);
-tree PAUP_67 = [&R] ((((((((H004_m009_c002,H013_m010_c004),(((H008_m005_c011,H012_m002_c004),H014_m003_c002),H007_m028_c015)),H005_m010_c004),H011_m011_c002),H002_m003_c006),H003_m018_c004),H006_m001_c003,(H010_m002_c013,H009_m003_c006)),H000_ancetre);
-tree PAUP_68 = [&R] (((((((H004_m009_c002,H013_m010_c004),(H005_m010_c004,(((H008_m005_c011,H012_m002_c004),H014_m003_c002),H007_m028_c015))),H011_m011_c002),H002_m003_c006),H003_m018_c004),H006_m001_c003,(H010_m002_c013,H009_m003_c006)),H000_ancetre);
-tree PAUP_69 = [&R] ((((((((H004_m009_c002,H013_m010_c004),(((H008_m005_c011,H012_m002_c004),H014_m003_c002),H007_m028_c015)),H005_m010_c004),H011_m011_c002),H003_m018_c004),H002_m003_c006),H006_m001_c003,(H010_m002_c013,H009_m003_c006)),H000_ancetre);
-tree PAUP_70 = [&R] ((((((H004_m009_c002,((H008_m005_c011,(H014_m003_c002,H012_m002_c004)),H013_m010_c004),H007_m028_c015),H005_m010_c004),H011_m011_c002),H002_m003_c006),H006_m001_c003,(H010_m002_c013,H009_m003_c006),H003_m018_c004),H000_ancetre);
-tree PAUP_71 = [&R] (((((((((H004_m009_c002,H013_m010_c004),((H008_m005_c011,H012_m002_c004),H014_m003_c002)),H007_m028_c015),H005_m010_c004),H011_m011_c002),H003_m018_c004),H002_m003_c006),H006_m001_c003,(H010_m002_c013,H009_m003_c006)),H000_ancetre);
-tree PAUP_72 = [&R] ((((((H004_m009_c002,(((H008_m005_c011,H012_m002_c004),H014_m003_c002),H007_m028_c015),H013_m010_c004),H005_m010_c004),H011_m011_c002),H002_m003_c006),H006_m001_c003,(H010_m002_c013,H009_m003_c006),H003_m018_c004),H000_ancetre);
-tree PAUP_73 = [&R] (((((H004_m009_c002,(H005_m010_c004,H007_m028_c015),((H008_m005_c011,(H014_m003_c002,H012_m002_c004)),H013_m010_c004)),H011_m011_c002),H002_m003_c006),H006_m001_c003,(H010_m002_c013,H009_m003_c006),H003_m018_c004),H000_ancetre);
-tree PAUP_74 = [&R] (((((H004_m009_c002,((H005_m010_c004,H007_m028_c015),((H008_m005_c011,H012_m002_c004),H014_m003_c002)),H013_m010_c004),H011_m011_c002),H002_m003_c006),H006_m001_c003,(H010_m002_c013,H009_m003_c006),H003_m018_c004),H000_ancetre);
-tree PAUP_75 = [&R] (((((H004_m009_c002,(H005_m010_c004,((H008_m005_c011,H012_m002_c004),H014_m003_c002),H007_m028_c015),H013_m010_c004),H011_m011_c002),H002_m003_c006),H006_m001_c003,(H010_m002_c013,H009_m003_c006),H003_m018_c004),H000_ancetre);
-tree PAUP_76 = [&R] ((((((H004_m009_c002,H013_m010_c004),(H005_m010_c004,(((H008_m005_c011,H012_m002_c004),H014_m003_c002),H007_m028_c015))),H011_m011_c002),H002_m003_c006),H006_m001_c003,(H010_m002_c013,H009_m003_c006),H003_m018_c004),H000_ancetre);
-tree PAUP_77 = [&R] ((((((H004_m009_c002,((H008_m005_c011,(H014_m003_c002,H012_m002_c004)),H013_m010_c004)),(H005_m010_c004,H007_m028_c015)),H011_m011_c002),H002_m003_c006),H006_m001_c003,(H010_m002_c013,H009_m003_c006),H003_m018_c004),H000_ancetre);
-tree PAUP_78 = [&R] ((((((H004_m009_c002,((H008_m005_c011,(H014_m003_c002,H012_m002_c004)),H013_m010_c004)),(H005_m010_c004,H007_m028_c015)),H011_m011_c002),H003_m018_c004),H006_m001_c003,H002_m003_c006,(H010_m002_c013,H009_m003_c006)),H000_ancetre);
-tree PAUP_79 = [&R] (((((((H004_m009_c002,H013_m010_c004),((H008_m005_c011,H012_m002_c004),H014_m003_c002),H007_m028_c015),H005_m010_c004),H011_m011_c002),H003_m018_c004),H006_m001_c003,H002_m003_c006,(H010_m002_c013,H009_m003_c006)),H000_ancetre);
-tree PAUP_80 = [&R] (((((((H004_m009_c002,H013_m010_c004),(H005_m010_c004,(((H008_m005_c011,H012_m002_c004),H014_m003_c002),H007_m028_c015))),H011_m011_c002),H003_m018_c004),H002_m003_c006),H006_m001_c003,(H010_m002_c013,H009_m003_c006)),H000_ancetre);
-tree PAUP_81 = [&R] (((((H004_m009_c002,((H005_m010_c004,H007_m028_c015),((H008_m005_c011,H012_m002_c004),H014_m003_c002)),H013_m010_c004),H011_m011_c002),H003_m018_c004),H006_m001_c003,H002_m003_c006,(H010_m002_c013,H009_m003_c006)),H000_ancetre);
-tree PAUP_82 = [&R] ((((((H004_m009_c002,H013_m010_c004),(H005_m010_c004,(((H008_m005_c011,H012_m002_c004),H014_m003_c002),H007_m028_c015))),H011_m011_c002),H003_m018_c004),H006_m001_c003,H002_m003_c006,(H010_m002_c013,H009_m003_c006)),H000_ancetre);
-tree PAUP_83 = [&R] (((((H004_m009_c002,(H005_m010_c004,H007_m028_c015),((H008_m005_c011,(H014_m003_c002,H012_m002_c004)),H013_m010_c004)),H011_m011_c002),H003_m018_c004),H006_m001_c003,H002_m003_c006,(H010_m002_c013,H009_m003_c006)),H000_ancetre);
-tree PAUP_84 = [&R] (((((H004_m009_c002,(H005_m010_c004,((H008_m005_c011,H012_m002_c004),H014_m003_c002),H007_m028_c015),H013_m010_c004),H011_m011_c002),H003_m018_c004),H006_m001_c003,H002_m003_c006,(H010_m002_c013,H009_m003_c006)),H000_ancetre);
-tree PAUP_85 = [&R] (((((((H004_m009_c002,((H008_m005_c011,(H014_m003_c002,H012_m002_c004)),H013_m010_c004)),(H005_m010_c004,H007_m028_c015)),H011_m011_c002),H003_m018_c004),H002_m003_c006),H006_m001_c003,(H010_m002_c013,H009_m003_c006)),H000_ancetre);
-tree PAUP_86 = [&R] ((((((H004_m009_c002,(H005_m010_c004,H007_m028_c015),((H008_m005_c011,(H014_m003_c002,H012_m002_c004)),H013_m010_c004)),H011_m011_c002),H003_m018_c004),H002_m003_c006),H006_m001_c003,(H010_m002_c013,H009_m003_c006)),H000_ancetre);
-tree PAUP_87 = [&R] ((((((H004_m009_c002,((H005_m010_c004,H007_m028_c015),((H008_m005_c011,H012_m002_c004),H014_m003_c002)),H013_m010_c004),H011_m011_c002),H003_m018_c004),H002_m003_c006),H006_m001_c003,(H010_m002_c013,H009_m003_c006)),H000_ancetre);
-tree PAUP_88 = [&R] ((((((H004_m009_c002,(H005_m010_c004,((H008_m005_c011,H012_m002_c004),H014_m003_c002),H007_m028_c015),H013_m010_c004),H011_m011_c002),H003_m018_c004),H002_m003_c006),H006_m001_c003,(H010_m002_c013,H009_m003_c006)),H000_ancetre);
-tree PAUP_89 = [&R] ((((((((H004_m009_c002,H013_m010_c004),((H008_m005_c011,H012_m002_c004),H014_m003_c002),H007_m028_c015),H005_m010_c004),H011_m011_c002),H003_m018_c004),H002_m003_c006),H006_m001_c003,(H010_m002_c013,H009_m003_c006)),H000_ancetre);
-End;
diff --git a/MANIFEST b/MANIFEST
index 83ef86c57f471475cd57ad76c93465ab40a0012e..1a2789e42a9a74a7af78de1e8ceb02973e903f59 100644
--- a/MANIFEST
+++ b/MANIFEST
@@ -5,6 +5,7 @@ ALTree/Base.pm
ALTree/Chi2.pm
ALTree/Foret.pm
ALTree/Import.pm
+ALTree/Input.pm
ALTree/Node.pm
ALTree/Sens.pm
ALTree/Site.pm
@@ -15,6 +16,7 @@ ALTree/SiteSens.pm
ALTree/SiteSensPerForet.pm
ALTree/SiteSensPerTree.pm
ALTree/Tree.pm
+ALTree/Utils.pm
Changes
CUtils/c_sources/chisq.c
CUtils/c_sources/chisq.h
@@ -35,31 +37,14 @@ CUtils/Makefile.PL
CUtils/ppport.h
CUtils/t/ALTree-CUtils.t
CUtils/t/double_permutation.t
-Documentation/example_files/case_control/association/100_caco.asso
-Documentation/example_files/case_control/association/caco.paup
-Documentation/example_files/case_control/association/correspond.txt
-Documentation/example_files/case_control/association/test.res.log
-Documentation/example_files/case_control/association/test.tree
-Documentation/example_files/case_control/caco.paup
-Documentation/example_files/case_control/caco.phase
-Documentation/example_files/case_control/caco.phase.out
-Documentation/example_files/case_control/caco.phase.out_freqs
-Documentation/example_files/case_control/caco.phase.out_monitor
-Documentation/example_files/case_control/caco.phase.out_pairs
-Documentation/example_files/case_control/caco.phase.out_recom
-Documentation/example_files/case_control/caco.phy
-Documentation/example_files/case_control/caco.prepaup
-Documentation/example_files/case_control/general/caco.paup
-Documentation/example_files/case_control/general/caco.phase
-Documentation/example_files/case_control/general/caco.phase.out
-Documentation/example_files/case_control/general/caco.prepaup
-Documentation/example_files/case_control/localisation/caco.loc
-Documentation/example_files/case_control/localisation/caco.paup
-Documentation/example_files/case_control/localisation/correspond.txt
-Documentation/example_files/case_control/localisation/et_caco.paup
-Documentation/example_files/case_control/localisation/test.res.log
-Documentation/example_files/case_control/localisation/test.tree
Documentation/fig/anc_outg.fig
+Documentation/fig/association_paml.fig
+Documentation/fig/association_paup.fig
+Documentation/fig/association_phylip.fig
+Documentation/fig/create_file_paup.fig
+Documentation/fig/create_file_phy.fig
+Documentation/fig/localisation_paml.fig
+Documentation/fig/localisation_paup.fig
Documentation/fig/option_b.fig
Documentation/fig/option_b.subfig
Documentation/fig/overview.fig
@@ -67,7 +52,162 @@ Documentation/Makefile
Documentation/manual.tex
Documentation/stage.bib
Makefile.PL
-MANIFEST
-META.yml Module meta-data (added by MakeMaker)
+MANIFEST This list of files
+META.yml
README
t/ALTree.t
+test/create_file/paup_file/caco.phase
+test/create_file/paup_file/caco.phase.out
+test/create_file/paup_file/caco.phase.out_freqs
+test/create_file/paup_file/caco.phase.out_monitor
+test/create_file/paup_file/caco.phase.out_pairs
+test/create_file/paup_file/caco.phase.out_recom
+test/create_file/paup_file/caco.prepaup
+test/create_file/paup_file/create_file
+test/create_file/paup_file/nb_cas_control.txt
+test/create_file/phy-paml_file/create_file
+test/create_file/phy-paml_file/fam19_0
+test/create_file/phy-paml_file/fam19_0.gm
+test/create_file/phy-paml_file/fam19_0_H1_HAPLOTYPES
+test/create_file/phy-paml_file/fam19_0_LDmeasuresCASES.xt
+test/create_file/phy-paml_file/fam19_0_LDmeasuresCONTROLS.xt
+test/create_file/phy-paml_file/nb_cas_control.txt
+test/create_file/phy-paml_file/NUM
+test/create_file/phy-paml_file/trio.fmh
+test/create_file/phy-paml_file/trio.prephy
+test/paml/unrooted_absent/association/1_trio_ML.asso
+test/paml/unrooted_absent/association/2base.t
+test/paml/unrooted_absent/association/baseml.ctl
+test/paml/unrooted_absent/association/lnf
+test/paml/unrooted_absent/association/mlb
+test/paml/unrooted_absent/association/nb_cas_control.txt
+test/paml/unrooted_absent/association/rst
+test/paml/unrooted_absent/association/rst1
+test/paml/unrooted_absent/association/rub
+test/paml/unrooted_absent/association/run_altree
+test/paml/unrooted_absent/association/trio2.phy
+test/paml/unrooted_absent/association/trio2.phy_phyml_tree.txt
+test/paml/unrooted_present/association/1_trio_ML.asso
+test/paml/unrooted_present/association/2base.t
+test/paml/unrooted_present/association/baseml.ctl
+test/paml/unrooted_present/association/lnf
+test/paml/unrooted_present/association/mlb
+test/paml/unrooted_present/association/nb_cas_control.txt
+test/paml/unrooted_present/association/rst
+test/paml/unrooted_present/association/rst1
+test/paml/unrooted_present/association/rub
+test/paml/unrooted_present/association/run_altree
+test/paml/unrooted_present/association/trio2.phy
+test/paml/unrooted_present/association/trio2.phy_phyml_tree.txt
+test/paml/unrooted_present/localisation/2base.t
+test/paml/unrooted_present/localisation/baseml.ctl
+test/paml/unrooted_present/localisation/et_trio2.phy
+test/paml/unrooted_present/localisation/lnf
+test/paml/unrooted_present/localisation/mlb
+test/paml/unrooted_present/localisation/nb_cas_controls.txt
+test/paml/unrooted_present/localisation/rst
+test/paml/unrooted_present/localisation/rst1
+test/paml/unrooted_present/localisation/rub
+test/paml/unrooted_present/localisation/run-prog
+test/paml/unrooted_present/localisation/trio2.loc
+test/paml/unrooted_present/localisation/trio2.phy
+test/paml/unrooted_present/localisation/trio2.phy_phyml_tree.txt
+test/paup/ancestor_absent/association/1_caco.asso
+test/paup/ancestor_absent/association/caco.paup
+test/paup/ancestor_absent/association/nb_cas_control.txt
+test/paup/ancestor_absent/association/run_altree
+test/paup/ancestor_absent/association/test.res.log
+test/paup/ancestor_absent/association/test.tree
+test/paup/ancestor_absent/localisation/caco.loc
+test/paup/ancestor_absent/localisation/caco.paup
+test/paup/ancestor_absent/localisation/et_caco.paup
+test/paup/ancestor_absent/localisation/nb_cas_control.txt
+test/paup/ancestor_absent/localisation/run-prog
+test/paup/ancestor_absent/localisation/test.res.log
+test/paup/ancestor_absent/localisation/test.tree
+test/paup/ancestor_present/association/1_caco.asso
+test/paup/ancestor_present/association/caco.paup
+test/paup/ancestor_present/association/nb_cas_control.txt
+test/paup/ancestor_present/association/run_altree
+test/paup/ancestor_present/association/test.res.log
+test/paup/ancestor_present/association/test.tree
+test/paup/ancestor_present/localisation/caco.loc
+test/paup/ancestor_present/localisation/caco.paup
+test/paup/ancestor_present/localisation/et_caco.paup
+test/paup/ancestor_present/localisation/nb_cas_control.txt
+test/paup/ancestor_present/localisation/run-prog
+test/paup/ancestor_present/localisation/test.res.log
+test/paup/ancestor_present/localisation/test.tree
+test/paup/outgr_absent/association/1_caco.asso
+test/paup/outgr_absent/association/caco.paup
+test/paup/outgr_absent/association/nb_cas_control.txt
+test/paup/outgr_absent/association/run_altree
+test/paup/outgr_absent/association/test.res.log
+test/paup/outgr_absent/association/test.tree
+test/paup/outgr_absent/localisation/caco.paup
+test/paup/outgr_absent/localisation/nb_cas_control.txt
+test/paup/outgr_absent/localisation/run-prog
+test/paup/outgr_present/association/1_caco.asso
+test/paup/outgr_present/association/caco.paup
+test/paup/outgr_present/association/nb_cas_control.txt
+test/paup/outgr_present/association/run_altree
+test/paup/outgr_present/association/test.res.log
+test/paup/outgr_present/association/test.tree
+test/paup/outgr_present/localisation/caco.loc
+test/paup/outgr_present/localisation/caco.paup
+test/paup/outgr_present/localisation/et_caco.paup
+test/paup/outgr_present/localisation/nb_cas_control.txt
+test/paup/outgr_present/localisation/run-prog
+test/paup/outgr_present/localisation/test.res.log
+test/paup/outgr_present/localisation/test.tree
+test/paup/unrooted_absent/association/1_caco.asso
+test/paup/unrooted_absent/association/caco.paup
+test/paup/unrooted_absent/association/nb_cas_control.txt
+test/paup/unrooted_absent/association/run_altree
+test/paup/unrooted_absent/association/test.res.log
+test/paup/unrooted_absent/association/test.tree
+test/paup/unrooted_absent/localisation/caco.loc
+test/paup/unrooted_absent/localisation/caco.paup
+test/paup/unrooted_absent/localisation/et_caco.paup
+test/paup/unrooted_absent/localisation/nb_cas_control.txt
+test/paup/unrooted_absent/localisation/run-prog
+test/paup/unrooted_absent/localisation/test.res.log
+test/paup/unrooted_absent/localisation/test.tree
+test/paup/unrooted_present/association/1_caco.asso
+test/paup/unrooted_present/association/caco.paup
+test/paup/unrooted_present/association/nb_cas_control.txt
+test/paup/unrooted_present/association/run_altree
+test/paup/unrooted_present/association/test.res.log
+test/paup/unrooted_present/association/test.tree
+test/paup/unrooted_present/localisation/caco.loc
+test/paup/unrooted_present/localisation/caco.paup
+test/paup/unrooted_present/localisation/et_caco.paup
+test/paup/unrooted_present/localisation/nb_cas_control.txt
+test/paup/unrooted_present/localisation/run-prog
+test/paup/unrooted_present/localisation/test.res.log
+test/paup/unrooted_present/localisation/test.tree
+test/phylip/ancestor_absent/association/1_trio_phy.asso
+test/phylip/ancestor_absent/association/ancestors
+test/phylip/ancestor_absent/association/nb_cas_controls.txt
+test/phylip/ancestor_absent/association/outfile
+test/phylip/ancestor_absent/association/outtree
+test/phylip/ancestor_absent/association/run_altree
+test/phylip/ancestor_absent/association/trio.phy
+test/phylip/ancestor_present/association/1_trio_phy.asso
+test/phylip/ancestor_present/association/ancestors
+test/phylip/ancestor_present/association/nb_cas_controls.txt
+test/phylip/ancestor_present/association/outfile
+test/phylip/ancestor_present/association/outtree
+test/phylip/ancestor_present/association/run_altree
+test/phylip/ancestor_present/association/trio.phy
+test/phylip/outgroup_absent/association/1_trio_phy.asso
+test/phylip/outgroup_absent/association/nb_cas_controls.txt
+test/phylip/outgroup_absent/association/outfile
+test/phylip/outgroup_absent/association/outtree
+test/phylip/outgroup_absent/association/run_altree
+test/phylip/outgroup_absent/association/trio.phy
+test/phylip/outgroup_present/association/nb_cas_controls.txt
+test/phylip/outgroup_present/association/outfile
+test/phylip/outgroup_present/association/outtree
+test/phylip/outgroup_present/association/run_altree
+test/phylip/outgroup_present/association/trio.phy
diff --git a/MANIFEST.SKIP b/MANIFEST.SKIP
index 9f0b7e110d7dbf473647fe47b92e73a5734f028b..81bff9f61026ddc616148212e5fa381525d2434b 100644
--- a/MANIFEST.SKIP
+++ b/MANIFEST.SKIP
@@ -3,6 +3,8 @@
\bCVS\b
,v$
.cvsignore$
+^\.svn\b
+/\.svn\b
# Makemaker generated files and dirs.
^MANIFEST\.
@@ -27,3 +29,4 @@
^Documentation/fig/.*_[0-9]+\.fig$
# Other
+.*\.o$
diff --git a/Makefile.PL b/Makefile.PL
index 2b419b7adfd96847ee7b6a19ad5ec7d3b6445e81..7b5d5925537f94f9dcc61b9dc60cfa7e1ed3fc81 100644
--- a/Makefile.PL
+++ b/Makefile.PL
@@ -6,7 +6,7 @@ WriteMakefile(
NAME => 'altree',
PMLIBDIRS => [ 'ALTree' ],
DIR => [ 'CUtils' ],
- VERSION => '0.9.2',
+ VERSION => '1.0.0',
PREREQ_PM => {}, # e.g., Module::Name => 1.1
($] >= 5.005 ? ## Add these new keywords supported since 5.005
(ABSTRACT_FROM => 'altree', # retrieve abstract from module