diff --git a/trunk/.cvsignore b/trunk/.cvsignore
new file mode 100644
index 0000000000000000000000000000000000000000..09d6709f42590b8e63b8167bb7bfd0cb13a589dc
--- /dev/null
+++ b/trunk/.cvsignore
@@ -0,0 +1,2 @@
+META.yml
+Makefile
diff --git a/trunk/ALTree/Base.pm b/trunk/ALTree/Base.pm
new file mode 100644
index 0000000000000000000000000000000000000000..47e069aca59adf83b1370ecc30ecc2d3d9e0dadc
--- /dev/null
+++ b/trunk/ALTree/Base.pm
@@ -0,0 +1,22 @@
+package ALTree::Base;
+
+###########################################
+######## MAIN DATA STRUCTURES #########
+###########################################
+
+sub _init {
+ my $self=shift;
+ if (@_) {
+ my %extra = @_;
+ @$self{keys %extra} = values %extra;
+ }
+}
+
+sub Debug {
+ my $self=shift;
+
+ #print STDERR @_;
+}
+
+1;
+
diff --git a/trunk/ALTree/Chi2.pm b/trunk/ALTree/Chi2.pm
new file mode 100644
index 0000000000000000000000000000000000000000..13468b398dbfdb73605692a9714bb2cba272f6c4
--- /dev/null
+++ b/trunk/ALTree/Chi2.pm
@@ -0,0 +1,224 @@
+package ALTree::Chi2;
+
+use strict;
+use ALTree::CUtils;
+
+BEGIN {
+ use Exporter ();
+ our ($VERSION, @ISA, @EXPORT, @EXPORT_OK, %EXPORT_TAGS);
+
+ # set the version for version checking
+ #$VERSION = 1.00;
+ # if using RCS/CVS, this may be preferred
+ $VERSION = do { my @r = (q$Revision$ =~ /\d+/g);
+ sprintf "%d."."%02d" x $#r, @r }; # must be all one line, for MakeMaker
+
+ @ISA = qw(Exporter);
+ @EXPORT = qw(NON_SIGNIFICATIF SIGNIFICATIF &chi2_significatif &definition_p_chi2 &reech_chi2);
+ #%EXPORT_TAGS = ( ); # eg: TAG => [ qw!name1 name2! ],
+
+ # your exported package globals go here,
+ # as well as any optionally exported functions
+ @EXPORT_OK = qw();
+}
+#our @EXPORT_OK;
+
+INIT {
+
+}
+
+# exported package globals go here
+#our $Var1;
+#our %Hashit;
+
+# non-exported package globals go here
+#our @more;
+#our $stuff;
+
+# initialize package globals, first exported ones
+#$Var1 = '';
+#%Hashit = ();
+
+# then the others (which are still accessible as $Some::Module::stuff)
+#$stuff = '';
+#@more = ();
+
+# all file-scoped lexicals must be created before
+# the functions below that use them.
+
+# file-private lexicals go here
+#my $priv_var = '';
+#my %secret_hash = ();
+
+# here's a file-private function as a closure,
+# callable as &$priv_func; it cannot be prototyped.
+#my $priv_func = sub {
+# # stuff goes here.
+#};
+
+# make all your functions, whether exported or not;
+# remember to put something interesting in the {} stubs
+#sub func1 {} # no prototype
+#sub func2() {} # proto'd void
+#sub func3($$) {} # proto'd to 2 scalars
+
+# this one isn't exported, but could be called!
+#sub func4(\%) {} # proto'd to 1 hash ref
+
+END { } # module clean-up code here (global destructor)
+
+use constant NON_SIGNIFICATIF => 0;
+use constant SIGNIFICATIF => 1;
+use constant PERM => 1000;
+##################################################################
+# Fonctions de seuil du chi2 (pré-calcul puis stockage dans un tableau)
+
+ my ($chi2_p)="chi2_p doit être initialisé !";
+#y ($chi2_p)=0.05;
+my ($test_prop_p)="test_prop_p doit être initialisé !";
+my ($chi2_seuil)=[];
+# test de significativité. Doit retourner vrai ou faux.
+sub chi2_significatif {
+ my ($ddl) = shift;
+ my ($chi2) = shift;
+
+ if ($ddl < 1) {
+ warn "chi[$ddl] asked...\n";
+ }
+
+ if (not defined($chi2_seuil->[$ddl])) {
+ #my $c=`critchi2 $chi2_p $ddl`+0; # Verif que les 2 appels sont équivalents
+ $chi2_seuil->[$ddl]=ALTree::CUtils::critchi($chi2_p, $ddl);
+ #if ($c != $$chi2_seuil[$ddl]) {
+ # print STDERR "Critchi2 : $c != $$chi2_seuil[$ddl]\n";
+ #}
+ #print "chi2_seuil[$ddl]= $$chi2_seuil[$ddl]\n";
+ #warn "Seuil chi2 non défini pour ddl $ddl";
+ #return 0;
+ }
+ return ($chi2 > $chi2_seuil->[$ddl]);
+}
+
+sub definition_p_chi2
+{
+ my($p)=shift;
+ my($pprop)=shift;
+ if (defined $p) {
+ $chi2_p=$p;
+ }
+ if (defined $pprop) {
+ $test_prop_p=$pprop;
+ }
+}
+
+sub chi2_fisher_significatif
+{
+ my($pvalue)=shift;
+
+ return ($pvalue < $chi2_p);
+}
+
+##################################################################
+# Rééchantillonnage
+
+# Quelques variables globales pour aller plus vite (même si c'est à éviter
+# en général)
+my(@fils_c);
+my(@fils_m);
+my($compteur);
+my($sum_malade);
+my($sum_controle);
+my($sum_total);
+my($nb_fils);
+
+
+my(@th_c, @th_m);
+my($clades);
+sub calcule_chi2
+{
+ my($i, $chi2, $temp);
+ $chi2=0;
+ for ($i=0; $i < $nb_fils; $i++){
+ $temp=($fils_c[$i]-$th_c[$i]);
+ $chi2+=($temp)*($temp)/$th_c[$i];
+
+ $temp=($$clades[$i]-$fils_c[$i]-$th_m[$i]);
+ $chi2+=($temp)*($temp)/$th_m[$i];
+ }
+ #print "Chi2 : $chi2\n";
+ return $chi2;
+}
+
+sub reech_chi2
+{
+ $sum_malade=shift;
+ $sum_controle=shift;
+ $sum_total=$sum_malade+$sum_controle;
+ $nb_fils=shift;
+ my($chi2_reel)=shift;
+ $clades=shift;
+ my($p_val)=0;
+ my($i, $k);
+ #my($alea);
+
+# nb_fils correspond en fait a tous les groupes sur lesquelles il faut faire
+# le chi2.
+# Cet ensemble de groupe a au total: $sum_malade et $sum_controle individus
+# (respectivement malades et controles)
+# clades est une référence sur un tableau contenant les effectifs globaux de
+# chaque clade
+
+
+ #print "Reechantillonage chi2 : ddl : ", ($nb_fils-1), " M: $sum_malade C: $sum_controle\n ";
+ #print "Chi2 réel : $chi2_reel\n";
+ #print "Clades: ";
+ #for $i (@{$clades}) { print "$i "; } print "\n";
+
+ # Pré calcul des effectifs théoriques
+ for ($i=0; $i < $nb_fils; $i++){
+ $th_c[$i]=($sum_controle*$$clades[$i])/($sum_total);
+ $th_m[$i]=($sum_malade*$$clades[$i])/($sum_total);
+ }
+
+ my($clade, $alea, $malades, $controles);
+ my($nb_tests)=PERM;
+ for ($k=1;$k<=$nb_tests; $k++){
+ $malades=$sum_malade;
+ $controles=$sum_controle;
+ for($clade=0; $clade<$nb_fils; $clade++) {
+ $fils_m[$clade]=0;
+ $fils_c[$clade]=0;
+ for($i=0; $i<$$clades[$clade]; $i++) {
+ $alea=rand($malades+$controles);
+ if ($alea < $malades) {
+ $malades--;
+ $fils_m[$clade]++;
+ } else {
+ $controles--;
+ $fils_c[$clade]++;
+ }
+ }
+ }
+
+ if (calcule_chi2 >= $chi2_reel){
+ $p_val++;
+ }
+ }
+ #DEBUG print "CHI2=$chi2_reel\n";
+ #print"nb de chi2 non calculable (effectif nul)= $compteur\n";
+ #DEBUG print "p_val1 = ", $p_val/$nb_tests,"\n";
+ # print "chi2_p771=$chi2_p\n";
+ return ($p_val/$nb_tests);
+}
+
+sub reech_significatif
+{
+ my($p_val)=shift;
+ my($nb_tests)=PERM;
+ #DEBUG print "Chi2P= $chi2_p\n";
+ #DEBUG print "p= ", $p_val , "\n";
+ #DEBUG print "test=", $p_val/$nb_tests<=$chi2_p, "\n";
+ return ($p_val<=$chi2_p);
+}
+
+1;
diff --git a/trunk/ALTree/Foret.pm b/trunk/ALTree/Foret.pm
new file mode 100644
index 0000000000000000000000000000000000000000..d5936c67aedd0b47b937f2d674e9d8f0fa947fa8
--- /dev/null
+++ b/trunk/ALTree/Foret.pm
@@ -0,0 +1,120 @@
+package ALTree::Foret;
+
+################################################################
+################################################################
+####################### Foret ########################
+################################################################
+################################################################
+
+use base qw(ALTree::Base ALTree::SiteCollection);
+
+sub New { # [classe]
+ my $class=shift;
+ my $self={};
+ bless($self, $class);
+ $self->InitSiteCollection();
+ $self->_init(@_);
+ $self->Debug("creating Foret\n");
+ return $self;
+}
+
+sub AddTree {
+ my $self=shift;
+ push @{$self->{"trees"}}, @_;
+}
+sub GetTree {
+ my $self=shift;
+ my $index=shift;
+ return $self->{"trees"}->[$index];
+}
+sub GetTreesList {
+ my $self=shift;
+ return @{$self->{"trees"}};
+}
+
+sub ProvideSite {
+ my $self=shift;
+ my $site_nb=shift;
+
+ if (not $self->HasSiteIndex($site_nb)) {
+ $self->AddSite(ALTree::SitePerForet->New($site_nb));
+ }
+ return $self->GetSite($site_nb);
+}
+
+sub CalculVi {
+ my $self=shift;
+
+ foreach my $tree ($self->GetTreesList()) {
+ foreach my $site ($tree->GetSitesList()) {
+ foreach my $sens ($site->GetSensList()) {
+ $self->ProvideSite($site->GetSiteNb())
+ ->ProvideSens($sens->GetSensStruct())
+ ->PlusVi($sens->GetVit());
+ }
+ }
+ }
+}
+
+sub _EnsureViMax {
+ my($self)=shift;
+ if (not exists ($self->{"V_i_max"})) {
+ my @tab_trie=sort {
+ $b->GetViMax() <=> $a->GetViMax()}
+ $self->GetSitesList();
+ $self->{"V_i_max"}=$tab_trie[0]->GetViMax();
+ $self->{"V_i_max_tab"}=\@tab_trie;
+ }
+}
+sub GetViMax {
+ my $self=shift;
+ $self->_EnsureViMax();
+ return $self->{"V_i_max"};
+}
+sub GetViMaxSite {
+ my($self)=shift;
+ my($index)=shift;
+ $self->_EnsureViMax();
+ return $self->{"V_i_max_tab"}->[$index];
+}
+sub GetViMaxSiteList {
+ my($self)=shift;
+ $self->_EnsureViMax();
+ return @{$self->{"V_i_max_tab"}};
+}
+sub NbViMaxSite {
+ my($self)=shift;
+ $self->_EnsureViMax();
+ return (scalar @{$self->{"V_i_max_tab"}});
+}
+
+sub _EnsureViMaxSens {
+ my($self)=shift;
+ if (not exists ($self->{"V_i_max_sens_tab"})) {
+ my @tab_trie=sort {
+ $b->GetVi() <=> $a->GetVi()
+ } map { $_->GetSensList(); } $self->GetSitesList();
+ #if ($tab_trie[0]->GetVi() != $self->GetViMax()) {
+ # die "Arghh\n";
+ #}
+ $self->{"V_i_max_sens_tab"}=\@tab_trie;
+ }
+}
+sub GetViMaxSens {
+ my($self)=shift;
+ my($index)=shift;
+ $self->_EnsureViMaxSens();
+ return $self->{"V_i_max_sens_tab"}->[$index];
+}
+sub GetViMaxSensList {
+ my($self)=shift;
+ $self->_EnsureViMaxSens();
+ return @{$self->{"V_i_max_sens_tab"}};
+}
+sub NbViMaxSens {
+ my($self)=shift;
+ $self->_EnsureViMaxSens();
+ return (scalar @{$self->{"V_i_max_sens_tab"}});
+}
+
+1;
diff --git a/trunk/ALTree/Import.pm b/trunk/ALTree/Import.pm
new file mode 100644
index 0000000000000000000000000000000000000000..a64a44436fa51fbe68569b5a4510175b7dce659e
--- /dev/null
+++ b/trunk/ALTree/Import.pm
@@ -0,0 +1,81 @@
+package ALTree::Import;
+
+use strict;
+use ALTree::Utils;
+use ALTree::Input;
+use ALTree::Sens;
+use ALTree::Tree;
+use ALTree::Foret;
+use ALTree::Node;
+use ALTree::SitePerTree;
+use ALTree::SitePerForet;
+use ALTree::SiteSensPerForet;
+
+BEGIN {
+ use Exporter ();
+ our ($VERSION, @ISA, @EXPORT, @EXPORT_OK, %EXPORT_TAGS);
+
+ # set the version for version checking
+ #$VERSION = 1.00;
+ # if using RCS/CVS, this may be preferred
+ $VERSION = do { my @r = (q$Revision$ =~ /\d+/g);
+ sprintf "%d."."%02d" x $#r, @r }; # must be all one line, for MakeMaker
+
+ @ISA = qw(Exporter);
+ @EXPORT = qw();
+ #%EXPORT_TAGS = ( ); # eg: TAG => [ qw!name1 name2! ],
+
+ # your exported package globals go here,
+ # as well as any optionally exported functions
+ @EXPORT_OK = qw();
+}
+#our @EXPORT_OK;
+
+INIT {
+
+}
+
+# exported package globals go here
+#our $Var1;
+#our %Hashit;
+
+# non-exported package globals go here
+#our @more;
+#our $stuff;
+
+# initialize package globals, first exported ones
+#$Var1 = '';
+#%Hashit = ();
+
+# then the others (which are still accessible as $Some::Module::stuff)
+#$stuff = '';
+#@more = ();
+
+# all file-scoped lexicals must be created before
+# the functions below that use them.
+
+# file-private lexicals go here
+#my $priv_var = '';
+#my %secret_hash = ();
+
+# here's a file-private function as a closure,
+# callable as &$priv_func; it cannot be prototyped.
+#my $priv_func = sub {
+# # stuff goes here.
+#};
+
+# make all your functions, whether exported or not;
+# remember to put something interesting in the {} stubs
+#sub func1 {} # no prototype
+#sub func2() {} # proto'd void
+#sub func3($$) {} # proto'd to 2 scalars
+
+# this one isn't exported, but could be called!
+#sub func4(\%) {} # proto'd to 1 hash ref
+
+END { } # module clean-up code here (global destructor)
+
+##################################################################
+# Fonctions de seuil du chi2 (pré-calcul puis stockage dans un tableau)
+
+1;
diff --git a/trunk/ALTree/Input.pm b/trunk/ALTree/Input.pm
new file mode 100644
index 0000000000000000000000000000000000000000..051f50e96ed9208325d019bcf4fbdb81a9155f83
--- /dev/null
+++ b/trunk/ALTree/Input.pm
@@ -0,0 +1,859 @@
+package ALTree::Input;
+
+use strict;
+
+BEGIN {
+ use Exporter ();
+ use vars qw($VERSION @ISA @EXPORT @EXPORT_OK %EXPORT_TAGS);
+
+ # set the version for version checking
+ #$VERSION = 1.00;
+ # if using RCS/CVS, this may be preferred
+ #$VERSION = do { my @r = (q$Revision$ =~ /\d+/g); sprintf "%d."."%02d" x $#r, @r }; # must be all one line, for MakeMaker
+
+ @ISA = qw(Exporter);
+ @EXPORT = qw(); #(&func1 &func2 &func4);
+ %EXPORT_TAGS = ( ); # eg: TAG => [ qw!name1 name2! ],
+
+ # your exported package globals go here,
+ # as well as any optionally exported functions
+ @EXPORT_OK = qw(&ReadCorrespond &PrepareTree);
+}
+use vars @EXPORT_OK;
+
+use ALTree::Utils qw(erreur);
+use Data::Dumper;
+###########################################
+######## Read file fonctions #########
+###########################################
+
+
+#Read the file correspond.txt and put haplotype ID, nb case and nb
+#controle in a hash: $correspondance{$HaploID}->{"case"} and
+#$correspondance{$HaploID}->{"controle"}
+
+sub ReadCorrespond
+{
+ my($name_correspond) =shift;
+ my($ligne, @tableau);
+ my(%correspondance);
+ open (CORRESP, '<', $name_correspond)
+ or erreur("Unable to read file '$name_correspond': $!\n", 0);
+ while ($ligne=<CORRESP>) {
+ chomp($ligne);
+ if ($ligne =~ /^\s*$/) {
+ next;
+ }
+ # On peut mettre '#' ou ';' pour introduire une ligne de commentaire
+ my $di="#";
+ if ($ligne =~ /^\s*[$di;]/) {
+ next;
+ }
+ @tableau=split(/\s+/, $ligne);
+ if ($#tableau != 2) {
+ ALTree::Utils::erreur("I do not find 3 columns in $name_correspond at".
+ " line $.:\n$ligne\nPlease, check the syntax.\n",0);
+ }
+
+ my $id=shift @tableau;
+ if ($id !~ /^[a-zA-Z0-9]+$/) {
+ ALTree::Utils::erreur("The haplotype name '$id' contains unauthorized".
+ " characters\nin $name_correspond at".
+ " line $.:\n$ligne\nPlease, check the syntax.\n",0);
+ }
+
+ for(my $i=0; $i<2; $i++) {
+ $_=shift @tableau;
+ my $value=0;
+ my $type;
+ if (/^([a-zA-Z]+)_?([0-9]+)$/) {
+ $type=$1;
+ $value += $2;
+ } else {
+ ALTree::Utils::erreur("I do not understand '$_' in $name_correspond at".
+ " line $.:\n$ligne\nPlease, check the syntax.\n", 0);
+ }
+ $_=$type;
+ if (/^(m(alade(s)?)?)|(case(s)?)$/) {
+ $type="case";
+ } elsif (/^c(ontrols?)?$/) {
+ $type="control";
+ } else {
+ ALTree::Utils::erreur("I do not understand '$_' in $name_correspond at".
+ " line $.:\n$ligne\nPlease, check the syntax.\n", 0);
+ }
+ if (defined($correspondance{$id}->{$type})) {
+ ALTree::Utils::erreur("For the second time, I read the number of".
+ " ${type}s of '$id'\nin file '$name_correspond' at".
+ " line $.:\n$ligne\nPlease, check the syntax.\n", 0);
+ }
+ $correspondance{$id}->{$type}=$value;
+ }
+ }
+ #my($clefs);
+ #DEBUG
+ #foreach $clefs (keys %correspondance) {
+ #print "$clefs case: ", $correspondance{$clefs}->{"case"}, "\n";
+ # print "$clefs, control: ",$correspondance{$clefs}->{"control"}, "\n";
+ #}
+ return(\%correspondance);
+}
+
+# return :
+# Hash of
+# "filename" => String
+# "anctype" => ANC::OutGroup|ANC::Rooted|ANC:Unrooted
+# ["outgroup" => String(leaf name)]
+# "trees" =>
+# Array (size number of trees) of
+# Hash of
+# "index" => Int
+# "line" => Int
+# "file" => ref of first hash
+# "tab_longbranche" =>
+# Array of (son, father, branch length)
+#
+# "tab_seq" =>
+# Hash of
+# son => Array of (father, yes|no|maybe, .....1..0..1..)
+#
+# "tab_infoapo" =>
+# Array of (father, son, apo number, CI, nb steps, direction of change)
+# "nb_br_non_nulle" =>
+# Int
+# ["has_ambiguity"] => Int
+# ["ancestor" => String(sequence)]
+# "tree" => Tree
+
+sub ReadInputFile1
+{
+ my($input_file)=shift;
+ my($phylo_program)=shift;
+ my($datatype)=shift;
+ my($ancetre)=shift;
+ my($identifiant);
+ my(%file)=("filename" => $input_file);
+
+ if ($phylo_program == PhylProg::PAUP) {
+ $identifiant="Tree number";
+ } elsif ($phylo_program == PhylProg::PHYLIP) {
+ $identifiant="requires a total of";
+ } else {
+ $identifiant = "TREE # ";
+ }
+ my $tab_arbres;
+ if ($phylo_program == PhylProg::PAUP) {
+ $tab_arbres=ReadPAUP(\%file);
+ } elsif ($phylo_program == PhylProg::PHYLIP) {
+ if ($datatype != DataType::SNP) {
+ erreur("Datatype DNA not yet implemented\n", 0);
+ }
+ $tab_arbres=ReadPHYLIP(\%file);
+ } else {
+ $tab_arbres=ReadPAML(\%file);
+ }
+ $file{"trees"}=$tab_arbres;
+
+ my $index=0;
+ for my $arbre (@{$tab_arbres}) {
+ $arbre->{"index"}=$index++;
+ $arbre->{"file"}=\%file;
+ $arbre->{"tree"}=readTreeOld($phylo_program, $arbre,
+ $datatype, $ancetre);
+ }
+ $file{"nb_trees"}=$index;
+ return (\%file);
+}
+
+sub setAncType
+{
+ my $file=shift;
+ my $type=shift;
+ my $value=shift;
+
+ if (not exists($file->{"anctype"})) {
+ $file->{"anctype"}=$type;
+ if ($type == ANC::OutGroup) {
+ $file->{"outgroup"}=$value;
+ }
+ return;
+ }
+ if ($type != $file->{"anctype"}) {
+ erreur("I found a tree '".$ANC::Name[$type].
+ "' where as previous were '".$ANC::Name[$file->{"anctype"}].
+ "'.\nin file '".$file->{"filename"}."'", 0);
+ }
+ if ($type == ANC::OutGroup) {
+ if (defined($file->{"outgroup"}) &&
+ defined($value) &&
+ $file->{"outgroup"} ne $value) {
+ erreur("I found a tree whose outgroup is '".$value.
+ "' where as previous were '".$file->{"outgroup"}.
+ "'.\nin file '".$file->{"filename"}."'", 0);
+ } elsif ((defined($file->{"outgroup"})) xor defined($value)) {
+ erreur("I found a tree whose outgroup is '".
+ (defined($value)?$value:"unknown").
+ "' where as previous were '".
+ (defined($file->{"outgroup"})?$file->{"outgroup"}:
+ "unknown").
+ "'.\nin file '".$file->{"filename"}."'", 0);
+ }
+ }
+}
+
+sub ReadPAUP
+{
+ my $file=shift;
+ my $filename=$file->{"filename"};
+ my($ligne);
+ my @trees;
+
+ open (INPUT, '<', $filename)
+ or erreur("Unable to read file '$filename': $!\n", 0);
+ TREE:
+ {
+ my(@tab_longbranche, @tab_infoapo);
+ my($nb_br_non_nulle)=0;
+ my(%tree);
+ my $anctype;
+
+ FIND_TREE:
+ {
+ while ($ligne=<INPUT>) {
+ last FIND_TREE if ($ligne =~ /^Tree number /);
+ }
+ # Fin du fichier
+ last TREE;
+ }
+ $tree{"line"}=$.;
+
+ FIND_LONGBRANCHES:
+ {
+ my $dia="#";
+ while ($ligne=<INPUT>) {
+ if ($ligne =~ /^Branch lengths and linkages for tree ${dia}[0-9]+ \(unrooted\)/) {
+ setAncType($file, ANC::Unrooted);
+ $anctype++;
+ }
+ last FIND_LONGBRANCHES if ($ligne =~ /^\s+Node\s+to node/);
+ }
+ next TREE;
+ }
+ READ_LONGBRANCHE:
+ {
+ my $pos = index($ligne, "to node");
+ while ($ligne=<INPUT>) {
+ if ($ligne =~ /-------------------------/) {
+ next;
+ }
+ if ($ligne =~ /^\s*Sum/) {
+ last READ_LONGBRANCHE;
+ }
+ chomp($ligne);
+ if ($ligne =~ /^\s*[0-9]+\s+root\s+0\s+0\s+0\s*$/) {
+ # On ignore la ligne root qui ne contient aucune mutation
+ next;
+ }
+ my $son = substr($ligne,0,$pos-1);
+ # print STDERR "son1:$son\n";
+ my $other_infos = substr($ligne,$pos);
+ $other_infos =~ s/^\s*//;
+ # print STDERR "otherinfos:$other_infos\n";
+ if ($son =~ /^\s*([0-9]+)\s*$/) {
+ $son = $1;
+ } elsif ($son =~ /\s*([^\s](.*[^\s])?)\s+\([0-9]*\)(\*)?\s*$/) {
+ $son = $1;
+
+ if (defined($3)) {
+ setAncType($file, ANC::OutGroup, $son);
+ $anctype++;
+ }
+ } else {
+ erreur("Sorry, I am unable to understand:\n$ligne\n".
+ "in file '$filename' at line $.\n".
+ "(bad branch '$son' while reading branch".
+ " lengths)\n", 0);
+ }
+ my @tableau = split(/\s+/, $other_infos);
+ if ($#tableau != 3) {
+ erreur("Sorry, I am unable to understand:\n$ligne\n".
+ "in file '$filename' at line $.\n".
+ "(bad number of columns while reading branch".
+ " lengths)\n", 0);
+ }
+ # We add (son, father, branch length)
+ push @tab_longbranche, [$tableau[0], $son, $tableau[1]];
+ if ($tableau[2] != 0) {
+ $nb_br_non_nulle++;
+ }
+ }
+ next TREE;
+ }
+ FIND_APO:
+ {
+ while ($ligne=<INPUT>) {
+ if ($ligne =~ /^\s+Branch\s+Character\s+Steps\s+CI\s+Change/) {
+ last FIND_APO;
+ }
+ }
+ next TREE;
+ }
+ READ_APO:
+ {
+ my $position = index($ligne, "Character");
+ my $son;
+ my $father;
+
+ while ($ligne=<INPUT>) {
+ chomp($ligne);
+ if ($ligne =~ /^\s*$/) {
+ last READ_APO;
+ }
+ if ($ligne =~ /^\s*------------------/) {
+ next;
+ }
+ my $name_haplo = substr($ligne,0,$position-1);
+ if ($name_haplo =~ /^\s*$/) {
+ if (not defined($son)) {
+ erreur("Sorry, I am unable to understand:\n$ligne\n".
+ "in file '$filename' at line $.\n".
+ "(no branch while reading".
+ " apomorphies)\n", 0);
+ }
+ } elsif ($name_haplo =~ /^\s*(root|node_[0-9]+) --> (.*[^\s])\s*$/){
+ $father=$1;
+ $son=$2;
+ $father=~ s/^node_//;
+ $son=~ s/^node_//;
+ } else {
+ erreur("Sorry, I am unable to understand:\n$ligne\n".
+ "in file '$filename' at line $.\n".
+ "(bad branch while reading".
+ " apomorphies)\n", 0);
+ }
+
+
+ my $infos = substr($ligne,$position);
+ #print STDERR "infos:$infos\n";
+ my @tab_infos=split(/\s+/, $infos);
+ if ($#tab_infos != 5) {
+ erreur("Sorry, I am unable to understand:\n$ligne\n".
+ "in file '$filename' at line $.\n".
+ "(bad number of columns while reading".
+ " apomorphies)\n", 0);
+ }
+
+ my $sens_chgt = join(' ', $tab_infos[3], "-->", $tab_infos[5]);
+
+ # (father, son, apo number, CI, nb steps, direction of change)
+ push @tab_infoapo, [$father, $son, $tab_infos[0],
+ $tab_infos[2], $tab_infos[1],
+ ALTree::Sens->New($sens_chgt)];
+
+ }
+ }
+ $tree{"tab_longbranche"} = \@tab_longbranche;
+ $tree{"tab_infoapo"} = \@tab_infoapo;
+ $tree{"nb_br_non_nulle"} = $nb_br_non_nulle;
+ if (not $anctype) {
+ setAncType($file, ANC::Rooted);
+ }
+ push @trees, \%tree;
+ redo TREE;
+ } continue {
+ erreur("Unexpected end of file while reading a tree\n".
+ "in file '$filename' at line $.\n", 0);
+ }
+ close(INPUT);
+ #print STDERR Dumper(@trees);
+ return \@trees;
+}
+
+sub ReadPHYLIP
+{
+ my $file=shift;
+ my $filename=$file->{"filename"};
+ my($ligne);
+ my @trees;
+
+ open (INPUT, '<', $filename)
+ or erreur("Unable to read file '$filename': $!\n", 0);
+ TREE:
+ {
+ my(@tab_longbranche);
+ my(%tab_seq);
+ my(%tree);
+
+ FIND_TREE:
+ {
+ FIND_ANCESTOR:
+ {
+ while ($ligne=<INPUT>) {
+ last FIND_TREE if ($ligne =~ /^From\s+To\s+Any\s+Steps/);
+ last FIND_ANCESTOR if ($ligne =~ /^best guesses of ancestral states:/);
+ }
+ # Fin du fichier
+ last TREE;
+ }
+ my $ancestor="";
+ READ_ANCESTOR:
+ {
+ while ($ligne=<INPUT>) {
+ chomp($ligne);
+ if ($ligne =~ /.*0\!\s+([01?\s]+)$/) {
+ my @tab=split(/\s+/, $1);
+ $ancestor.=join('', @tab);
+ } elsif ($ligne =~ /^[\s]*$/) {
+ last READ_ANCESTOR;
+ } elsif ($ligne =~ /^[0-9\s]*$/) {
+ } elsif ($ligne =~ /^\s*\*-+\s*$/) {
+ } else {
+ erreur("Sorry, I am unable to understand:\n$ligne\n".
+ "in file '$filename' at line $.\n".
+ "(while reading ancestor)\n", 0);
+ }
+ }
+ next TREE;
+ }
+ $tree{"ancestor"}=$ancestor;
+ setAncType($file, ANC::OutGroup, undef);
+ #print STDERR "ancestor=$ancestor\n";
+ while ($ligne=<INPUT>) {
+ last FIND_TREE if ($ligne =~ /^From\s+To\s+Any\s+Steps/);
+ }
+ next TREE;
+ }
+ $tree{"line"}=$.;
+
+ READ_LONGBRANCHE:
+ {
+ while ($ligne=<INPUT>) {
+ chomp($ligne);
+
+ if ($ligne =~ /^\s*root\s+[0-9]+\s+no\s+[. ]+\s*$/) {
+ # On ignore la ligne root qui ne contient aucune mutation
+ next;
+ } elsif ($ligne =~ /^\s*([0-9a-zA-Z_]+)\s+([0-9a-zA-Z_]+)\s+(yes|no|maybe)\s+([01.? ]+)\s*$/) {
+ #print STDERR "trouvé! $ligne\n";
+ my($father)=$1;
+ my($son)=$2;
+ my($step2)=$3;
+ my $seq=join('', split(/\s+/, $4));
+ my $step=$seq;
+ $step =~ s/\.//g;
+ $step=length($step);
+ push @tab_longbranche, [$father, $son, $step];
+ if (defined($tab_seq{$son})) {
+ erreur("It is the second time I read an information".
+ "for the branch leading to '$son':\n$ligne\n".
+ "in file '$filename' at line $.\n".
+ "Please, check your data.\n", 0);
+ }
+ $tab_seq{$son}=[$father, $step2, $seq];
+ } else {
+ if (scalar(@tab_longbranche)==0) {
+ next;
+ } elsif ($ligne =~ /^\s*$/) {
+ last READ_LONGBRANCHE;
+ } else {
+ erreur("Sorry, I am unable to understand:\n$ligne\n".
+ "in file '$filename' at line $.\n".
+ "(while reading branches)\n", 0);
+ }
+ }
+ }
+ if (scalar(@tab_longbranche)==0) {
+ next TREE;
+ }
+ }
+ $tree{"tab_longbranche"} = \@tab_longbranche;
+ $tree{"tab_seq"} = \%tab_seq;
+ if (not exists($tree{"ancestor"})) {
+ setAncType($file, ANC::Rooted);
+ }
+ push @trees, \%tree;
+ redo TREE;
+ } continue {
+ erreur("Unexpected end of file while reading a tree\n".
+ "in file '$filename' at line $.\n", 0);
+ }
+ close(INPUT);
+ #print STDERR Dumper(@trees);
+ return \@trees;
+}
+
+sub ReadPAML
+{
+ my $file=shift;
+ my $filename=$file->{"filename"};
+ my($ligne);
+ my @trees;
+
+ open (INPUT, '<', $filename)
+ or erreur("Unable to open read '$filename': $!\n", 0);
+ TREE:
+ {
+ my(@tab_longbranche, @tab_infoapo);
+ my($nb_br_non_nulle)=0;
+ my(%tree);
+
+ FIND_TREE:
+ {
+ while ($ligne=<INPUT>) {
+ last FIND_TREE if ($ligne =~ /^\s*Summary of changes along branches/);
+ }
+ # Fin du fichier
+ last TREE;
+ }
+ $tree{"line"}=$.;
+ READ_LONGBRANCHE:
+ {
+ READ_BRANCH:
+ while ($ligne=<INPUT>) {
+ chomp($ligne);
+ if ($ligne =~ /^\s*List of extant and reconstructed sequences/) {
+ last READ_LONGBRANCHE;
+ }
+ if ($ligne =~ /^\s*$/) {
+ next;
+ }
+ if ($ligne =~ /^Check root for directions of change./) {
+ next;
+ }
+ if (($ligne =~ /\s*Branch [0-9]+:\s+([0-9]+)\.\.([0-9]+)\s*$/) ||
+ ($ligne =~ /\s*Branch [0-9]+:\s+([0-9]+)\.\.[0-9]+\s+[(](.*)[)]\s*$/)) {
+ my $father=$1;
+ my $son=$2;
+ my $br_len=0;
+ READ_APO:
+ {
+ while ($ligne=<INPUT>) {
+ if ($ligne =~ /^\s*$/) {
+ next;
+ }
+ if ($ligne =~ /\s*([0-9]+)\s+([0-9A-Za-z?_-])\s+[0-9.]+\s*->\s*([0-9A-Za-z?_-])\s*([0-9\.]*)?\s*/) {
+ # A VERIFIER: NORMALEMENT NE DOIT SE PRODUIRE QU'EN BOUT DE BRANCHES!
+ if ($3 eq "?") {
+ next;
+ }
+ #father
+ #son
+ # apomorphie number
+ # CI
+ # nb steps =1 for SNPs
+ # direction of the change
+ $br_len++;
+ push @tab_infoapo, [$father, $son, $1, undef,
+ 1, ALTree::Sens
+ ->New($2."->".$3)];
+ } else {
+ last READ_APO;
+ }
+ }
+ next TREE;
+ }
+
+ # We add (son, father, branch length)
+ push @tab_longbranche, [$father, $son, $br_len];
+ if ($br_len != 0) {
+ $nb_br_non_nulle++;
+ }
+ # On boucle : on a déjà trouvé une autre ligne
+ redo READ_BRANCH;
+ } else {
+ erreur("Sorry, I am unable to understand:\n$ligne\n".
+ "in file '$filename' at line $.\n", 0);
+ }
+ }
+ next TREE;
+ }
+ $tree{"tab_longbranche"} = \@tab_longbranche;
+ $tree{"tab_infoapo"} = \@tab_infoapo;
+ $tree{"nb_br_non_nulle"} = $nb_br_non_nulle;
+ setAncType($file, ANC::Unrooted);
+ push @trees, \%tree;
+ redo TREE;
+ } continue {
+ erreur("Unexpected end of file while reading a tree\n".
+ "in file '$filename' at line $.\n", 0);
+ }
+ close(INPUT);
+ #print STDERR Dumper(@trees);
+ return \@trees;
+}
+
+sub PrepareTree {
+ my $phylo_program=shift;
+ my $input_file=shift;
+ my $datatype=shift;
+ my $ancetre=shift;
+ my $number_arbre=shift;
+
+ return $input_file->{"trees"}->[$number_arbre];
+}
+
+#use Data::Dumper;
+sub readTreeOld {
+ my $phylo_program=shift;
+ my $tab_arbre=shift;
+ my $datatype=shift;
+ my $ancetre=shift;
+ my $tree;
+
+ my $tab_longbranche=$tab_arbre->{"tab_longbranche"};
+ $tree=TreeBuilding($tab_longbranche);
+
+ #print STDERR Dumper($tab_arbre);
+ #print STDERR Dumper($tree);
+ if ($phylo_program == PhylProg::PHYLIP) {
+ my $racine=$tree->GetRoot();
+ my $ancetre_seq;
+ if (not defined($tab_arbre->{"ancestor"})) {
+ if ($ancetre) {
+ $ancetre_seq=$ancetre;
+ } else {
+ erreur ("You have forgotten the option --anc-seq!\n", 0);
+ }
+ } else {
+ $ancetre_seq=$tab_arbre->{"ancestor"};
+ if ($ancetre && $ancetre ne $ancetre_seq) {
+ print STDERR "ancestor defined twice, the sequence entered".
+ " with the -anc-seq option will be ignored for the".
+ " tree number ".($tab_arbre->{"index"}+1)."\n";
+ }
+ }
+ BuildInfoApoPhylip($tab_arbre, $ancetre_seq, $racine);
+ }elsif ($phylo_program == PhylProg::PAUP ||
+ $phylo_program == PhylProg::PAML) {
+
+ } else {
+ ALTree::Utils::internal_error("Phylogeny program not supported");
+ }
+
+ my $tab_infoapo=$tab_arbre->{"tab_infoapo"};
+ FillTreeApoInfo($tree, $tab_infoapo);
+
+ if (not defined($tab_arbre->{"has_ambiguity"})) {
+ # CheckApoBrlen($tree); Pb avec phylip..
+ my $nb_br_non_nulle=$tab_arbre->{"nb_br_non_nulle"};
+ $tree->SetNbBrNonNulle($nb_br_non_nulle);
+
+ CheckApoBrlen($tree);
+ }
+
+ return $tree;
+}
+
+###########################################
+######### BUILDING OF THE TREE ##########
+###########################################
+
+
+# Build the tree and add the branch length info
+sub TreeBuilding{
+ my($tab_longbranche)=shift;
+ my($i);
+ my($tree)=ALTree::Tree->New();
+
+ #print "TreeBuilding\n";
+ for ($i=0;$i<=$#$tab_longbranche;$i++) {
+ my($pere_id, $fils_id, $long_br); # variables intermédiaires pour
+ # lisibilite du prog
+
+ $pere_id=$tab_longbranche->[$i]->[0];
+ $fils_id=$tab_longbranche->[$i]->[1];
+ $long_br=$tab_longbranche->[$i]->[2];
+
+ my $pere;
+ my $fils;
+ if (not $tree->HasNodeIndex($fils_id)) {
+ $fils=ALTree::Node->New($fils_id); #creation de la structure Node
+ $tree->AddNode($fils); # puis, on la met dans tree
+ } else {
+ $fils=$tree->GetNode($fils_id);
+ }
+ if (not $tree->HasNodeIndex($pere_id)) {
+ $pere=ALTree::Node->New($pere_id); #creation de la structure Node
+ $tree->AddNode($pere); # puis, on la met dans tree
+ } else {
+ $pere=$tree->GetNode($pere_id);
+ }
+ $pere->AddChild($fils);
+# print "arbre{pere}->{children}->[0]->{id} ", $arbre->{$pere}->{"children"}->[0]->{"id"}, "\n";
+ if ($fils->HasFather()) {
+ die ($fils->Name()." already have a father: ".$fils->GetFather()->Name().
+ " and I would like ".$pere->Name()." as father\n");
+ } else {
+ $fils->SetFather($pere);
+ }
+ if ($fils->HasBrLen()) {
+ die($fils->Name()." already have a branch length: ".$fils->GetBrLen()."\n");
+ } else {
+ $fils->SetBrLen($long_br);
+ }
+ }
+ return($tree);
+}
+
+sub FillTreeApoInfo
+{
+ my($tree)=shift;
+ my($tab_infoapo)=shift;
+ my($i);
+
+ #print "FillTreeApoInfo\n";
+ for ($i=0;$i<=$#$tab_infoapo;$i++) {
+ my($pere_id, $fils_id, $apo_num, $apo_CI, $apo_steps, $apo_sens)
+ = @{$tab_infoapo->[$i]};
+ #print "branche pere($pere) -> fils($fils)\n";
+ if (not $tree->HasNodeIndex($pere_id) or
+ not $tree->HasNodeIndex($fils_id)) {
+ my $id;
+ if (not $tree->HasNodeIndex($pere_id)) {
+ $id=$pere_id;
+ } else {
+ $id=$fils_id;
+ }
+ erreur("For the apomorphy $apo_num ('$pere_id' -> '$fils_id'),".
+ " the node name\n'$id' has not been found in the tree\n".
+ "Please, check your data.", 0);
+ }
+ my $pere=$tree->GetNode($pere_id);
+ #print $pere->Name();
+ my $fils=$tree->GetNode($fils_id);
+ #print STDERR "fils = $fils_id, pere=$pere_id\n";
+ if ($fils->GetFather() != $pere) {
+ erreur("I read the apomorphy $apo_num ('$pere_id' -> '$fils_id').\n".
+ "However, the node '$fils_id' has '".
+ $fils->GetFather()->Name()."' as father in the tree.\n".
+ "Please, check your data.", 0);
+ }
+
+ my $site;
+ if (not $tree->HasSiteIndex($apo_num)) {
+ $site=ALTree::SitePerTree->New($apo_num);
+ $tree->AddSite($site);
+ # CI is not used any more
+ #if (defined $apo_CI) { # For PAML trees, CI is not defined
+ # $site->SetCI($apo_CI);
+ #}
+ } else {
+ $site=$tree->GetSite($apo_num);
+ }
+
+ my($ref_site_sens)=$site->ProvideSens($apo_sens);
+ $ref_site_sens->SetStep($apo_steps); # For PAML, $aposteps=1
+
+ $fils->AddApo($ref_site_sens); # lie arbre et hash_site_sens
+ }
+}
+
+sub BuildInfoApoPhylip
+{
+ my($tab_arbre)=shift;
+ my($ancetre_seq)=shift;
+ my($racine)=shift;
+
+ my @tab_infoapo;
+ my $nb_br_non_nulle=0;
+ my $has_ambiguity=0;
+ my($tab_seq)=$tab_arbre->{"tab_seq"};
+
+ my $set_seq;
+
+ my $root=$racine->GetId();
+
+ $set_seq=sub {
+ my $son=shift;
+
+ my $branch=$tab_seq->{$son};
+ if (scalar(@{$branch})==4) {
+ return;
+ }
+
+ my $father=$branch->[0];
+ my $fatherseq;
+
+ if (not defined($tab_seq->{$father})) {
+ if ($father ne $root) {
+ erreur("The node '$son' seems to be a son of '".
+ $father."'\nbut I cannot get info about this branch ".
+ "in the tree number ".($tab_arbre->{"index"}+1).
+ "\nthat begins at line ".$tab_arbre->{"line"}.
+ " in file '".$tab_arbre->{"file"}->{"filename"}.
+ "'\nPlease, check your data.\n", 0);
+ }
+ $fatherseq=$ancetre_seq;
+ } else {
+ if (scalar(@{$tab_seq->{$father}}) == 3) {
+ $set_seq->($father);
+ }
+ $fatherseq=$tab_seq->{$father}->[3];
+ }
+ my $childseq=$branch->[2];
+ my $longueur=length($childseq);
+
+ if (length($fatherseq) != $longueur) {
+ erreur("Reconstructed sequences have not the same length".
+ " at node '".$father."'\n($fatherseq) and at node '".
+ $son."' ($childseq)\n", 0);
+ }
+ my($br_len)=0;
+ my($newchildseq)="";
+ for (my $i=0; $i<$longueur;$i++) {
+ my($fathersite)= substr($fatherseq,$i,1);
+ my($childsite)= substr($childseq, $i,1);
+ if ($childsite eq ".") {
+ $childsite=$fathersite;
+
+ } elsif ($fathersite ne $childsite) {
+ if ($fathersite eq '?' || $childsite eq '?') {
+ $has_ambiguity++;
+ }
+ $br_len++;
+ my($apo_num)=$i+1;
+ my($apo_sens)=ALTree::Sens->New($fathersite."->".$childsite);
+ push @tab_infoapo, [$father, $son, $apo_num,
+ undef, # Pas de CI dans les données avec PHYLIP
+ 1, # Pas de gestion des micro sat.
+ $apo_sens];
+ }
+ $newchildseq.=$childsite;
+ }
+ if ($br_len != 0) {
+ $nb_br_non_nulle++;
+ }
+ push @{$branch}, $newchildseq;
+ };
+
+ for my $son (keys %{$tab_seq}) {
+ $set_seq->($son);
+ }
+
+ $tab_arbre->{"tab_infoapo"}=\@tab_infoapo;
+ $tab_arbre->{"nb_br_non_nulle"}=$nb_br_non_nulle;
+ if ($has_ambiguity) {
+ $tab_arbre->{"has_ambiguity"}=$has_ambiguity;
+ }
+ #delete($tab_arbre->{"tab_seq"});
+}
+
+
+sub CheckApoBrlen
+{
+ my($tree)=shift;
+ my($node);
+
+ $tree->GetRoot()->SetBrLen(0); # to prevent "uninitialized value"
+
+ foreach $node ($tree->GetNodesList()) {
+ if ($node->GetBrLen() != $node->NbApoStep()) {
+ # check if nb_apo correspond to br_len
+ die "Error in the tree: branch length= ", $node->GetBrLen(),
+ " but ", $node->NbApoStep(),
+ " apomorphies are defined for node ", $node->Name(), "\n";
+ }
+ }
+}
+
+1;
diff --git a/trunk/ALTree/Node.pm b/trunk/ALTree/Node.pm
new file mode 100644
index 0000000000000000000000000000000000000000..ba474610ef1e38548bd906357fe133a2df24fd0a
--- /dev/null
+++ b/trunk/ALTree/Node.pm
@@ -0,0 +1,240 @@
+package ALTree::Node;
+
+################################################################
+################################################################
+####################### Node ##########################
+################################################################
+################################################################
+
+use base 'ALTree::Base';
+
+# Structure Node
+# "id" -> String
+# "children" -> Array of (Node)
+# "father" -> Node
+# "apo" -> Hash of ('num_apo' => SiteSens)
+# "br_len" -> Integer
+# "case" -> Integer
+# "control" -> Integer
+# "level" -> Integer
+# "height" -> Integer
+# "sequence" -> string # used only with phylip
+# "oldfather" -> Node # après fusion des branches nulles (anciennes relations)
+# "oldchildren" -> Array of (Node) # après fusion des branches nulles (anciennes relations de parenté)
+# "label" -> string # nom noeuds apres fusion 3+(4) par exemple
+# "res_test" -> Array of (TestResults)
+
+#Creation d'une structure
+sub New { # [classe] id
+ my $class=shift;
+ my $self={};
+ my $id=shift;
+ bless($self, $class);
+ $self->_init("id" => $id, "apo" => {},
+ "children" => [], @_);
+ $self->Debug("creating Node $id\n");
+ return $self;
+}
+
+sub GetId {
+ my $self=shift;
+ return $self->{"id"};
+}
+
+sub SetFather {
+ my $self=shift;
+ my $father=shift;
+ $self->{"father"}=$father;
+}
+sub GetFather {
+ my $self=shift;
+ return $self->{"father"};
+}
+sub HasFather {
+ my $self=shift;
+ return defined($self->{"father"});
+}
+sub Father {
+ my $self=shift;
+ my $newfather=shift;
+ if (defined($newfather)) {
+ $self->SetFather($newfather);
+ }
+ return $self->GetFather();
+}
+sub RecordOrigFather {
+ my $self=shift;
+ my $father=shift;
+ if ($self->HasFather()) {
+ $self->{"orig_father"}=$self->GetFather();
+ }
+}
+sub GetOrigFather {
+ my $self=shift;
+ if (exists($self->{"orig_father"})) {
+ return $self->{"orig_father"};
+ } else {
+ return $self->GetFather();
+ }
+}
+
+sub SetCase {
+ my $self=shift;
+ my $value=shift;
+ $self->{"case"}=$value;
+}
+sub GetCase {
+ my $self=shift;
+ return $self->{"case"};
+}
+sub EraseCase {
+ my $self=shift;
+ delete($self->{"case"});
+}
+
+sub SetControl {
+ my $self=shift;
+ my $value=shift;
+ $self->{"control"}=$value;
+}
+sub GetControl {
+ my $self=shift;
+ return $self->{"control"};
+}
+sub EraseControl {
+ my $self=shift;
+ delete($self->{"control"});
+}
+
+sub SetBrLen {
+ my $self=shift;
+ my $br_len=shift;
+ $self->{"br_len"}=$br_len;
+}
+sub GetBrLen {
+ my $self=shift;
+ return $self->{"br_len"};
+}
+sub HasBrLen {
+ my $self=shift;
+ return exists($self->{"br_len"});
+}
+
+sub AddOldChild {
+ my $self=shift;
+ push @{$self->{"oldchildren"}}, @_;
+}
+sub GetOldChildrenList {
+ my $self=shift;
+ return @{$self->{"oldchildren"}};
+}
+
+sub AddChild {
+ my $self=shift;
+ push @{$self->{"children"}}, @_;
+}
+sub GetChildrenList {
+ my $self=shift;
+ return @{$self->{"children"}};
+}
+sub DeleteChild {
+ my $self=shift;
+ my $todelete=shift;
+ my @newchidren=grep {$_ != $todelete} $self->GetChildrenList();
+ $self->{"children"}=\@newchidren;
+ return;
+# my $children=$self->{"children"};
+# my($i);
+# for ($i=0; $i<=$#$children; $i++) {
+# if ($children->[$i]==$todelete) {
+# splice(@{$children}, $i, 1);
+# return;
+# }
+# }
+}
+sub NbChildren {
+ my $self=shift;
+ return scalar(@{$self->{"children"}});
+}
+sub GetChild {
+ my $self=shift;
+ my $index=shift;
+
+ return $self->{"children"}->[$index];
+}
+sub ForgetChildren {
+ my $self=shift;
+ $self->{"children"}=[];
+}
+
+sub SetSequence {
+ my($self)=shift;
+ my($sequence)=shift;
+ $self->{"sequence"}=$sequence;
+}
+sub GetSequence {
+ my($self)=shift;
+ return $self->{"sequence"};
+}
+
+sub AddApo {
+ my $self=shift;
+ my $site_sens=shift;
+ my $apo=$site_sens->GetSiteNb();
+ if (exists($self->{"apo"}->{$apo})) {
+ die "Adding aleardy present apo $apo in ", $self->Name(),"\n";
+ }
+ $self->Debug("Adding apo $apo in ", $self->Name(),"\n");
+ $self->{"apo"}->{$apo}=$site_sens;
+ $site_sens->_AddNode($self);
+}
+sub NbApo {
+ my $self=shift;
+ return scalar (keys(%{$self->{"apo"}}));
+}
+sub GetApoIndexList {
+ my $self=shift;
+ return keys(%{$self->{"apo"}});
+}
+sub GetApoList {
+ my $self=shift;
+ return values(%{$self->{"apo"}});
+}
+sub GetApo {
+ my $self=shift;
+ my $apo=shift;
+ return $self->{"apo"}->{$apo};
+}
+sub DeleteAllApo {
+ my $self=shift;
+ foreach my $apo ($self->GetApoList()) {
+ $apo->_DeleteNode($self);
+ }
+ $self->{"apo"}={};
+}
+
+##Modifie Claire
+sub NbApoStep {
+ my $self=shift;
+ my($compteur)=0;
+ my($apo);
+ foreach $apo ($self->GetApoList()) {
+ $compteur+=$apo->GetStep();
+ }
+ return $compteur;
+}
+
+sub Name {
+ my $self=shift;
+ if (defined ($self->{"label"})) {
+ return $self->{"label"};
+ } else {
+ return $self->GetId();
+ }
+}
+
+#Faire meme chose pour case, control et br_len (HasBrLen), level, high, sequence, label, oldfather
+#Faire oldchildren (GetOldChildren, SetOldChildren, )
+
+
+1;
diff --git a/trunk/ALTree/Sens.pm b/trunk/ALTree/Sens.pm
new file mode 100644
index 0000000000000000000000000000000000000000..36217550f5266c83db2f42d73dc6d247dec10c2a
--- /dev/null
+++ b/trunk/ALTree/Sens.pm
@@ -0,0 +1,66 @@
+package ALTree::Sens;
+
+################################################################
+################################################################
+####################### Sens ##########################
+################################################################
+################################################################
+
+use base 'ALTree::Base';
+
+#Creation d'une structure
+sub New { # [classe] sens
+ my $class=shift;
+ my $self={};
+ my $sens=shift;
+ bless($self, $class);
+
+ if ($sens !~ /^\s*([0-9a-zA-Z?]+)\s*[-=_]*[>]\s*([0-9a-zA-Z?]+)\s*$/) {
+ die "Invalid sens : $sens\n";
+ }
+
+ $self->_init("start" => $1, "end" => $2, "switch" => 0, @_);
+ return $self;
+}
+
+#Creation d'une structure
+sub NewRev { # [classe] sens
+ my $class=shift;
+ my $self={};
+ my $sens=shift;
+ bless($self, $class);
+
+ $self->_init("start" => $sens->{"end"},
+ "end" => $sens->{"start"}, "switch" => 0, @_);
+ return $self;
+}
+
+sub _makeLabel {
+ my $self=shift;
+ my $start=shift;
+ my $end=shift;
+
+ if ($self->{'switch'}) {
+ return $end."-->".$start;
+ } else {
+ return $start."-->".$end;
+ }
+}
+
+sub GetLabel {
+ my $self=shift;
+ return $self->_makeLabel($self->{"start"}, $self->{"end"});
+}
+
+sub GetLabelRev {
+ my $self=shift;
+ return $self->_makeLabel($self->{"end"}, $self->{"start"});
+}
+
+sub Switch {
+ my $self=shift;
+
+ $self->{'switch'} = 1-$self->{'switch'};
+}
+
+1;
diff --git a/trunk/ALTree/Site.pm b/trunk/ALTree/Site.pm
new file mode 100644
index 0000000000000000000000000000000000000000..205e646d5cb699c6fba9b41ffd8d17d8039f4e25
--- /dev/null
+++ b/trunk/ALTree/Site.pm
@@ -0,0 +1,75 @@
+package ALTree::Site;
+
+################################################################
+################################################################
+####################### Site ##########################
+################################################################
+################################################################
+
+use base 'ALTree::Base';
+use ALTree::Sens;
+
+# Structure Site
+# "site_nb" -> Integer
+# "sens_struct" -> Hash of ('sens_label' -> SiteSens)
+
+sub InitSite { # [obj] $site
+ my $self=shift;
+ my $site_nb=shift;
+ $self->_init("site_nb" => $site_nb, "sens_struct" => {});
+ $self->Debug("creating Site $site_nb\n");
+}
+
+sub GetSiteNb {
+ my $self=shift;
+ return $self->{"site_nb"};
+}
+
+sub HasSensIndex {
+ my $self=shift;
+ my $sens=shift;
+
+ return exists($self->{"sens_struct"}->{$sens->GetLabel()});
+}
+sub AddSens {
+ my $self=shift;
+ my $sens=shift;
+
+ my($ref_site_sens)=$self->NewSens($sens);
+ $self->{"sens_struct"}->{$sens->GetLabel()}=$ref_site_sens;
+ my $sensRev=ALTree::Sens->NewRev($sens);
+ my($ref_site_sens_rev)=$self->NewSens($sensRev);
+ $self->{"sens_struct"}->{$sensRev->GetLabel()}=$ref_site_sens_rev;
+ ALTree::SiteSens::LinkRev($ref_site_sens, $ref_site_sens_rev);
+}
+sub GetSens {
+ my $self=shift;
+ my $sens=shift;
+
+ return $self->{"sens_struct"}->{$sens->GetLabel()};
+}
+sub ProvideSens {
+ my $self=shift;
+ my $sens=shift;
+ if (not $self->HasSensIndex($sens)) {
+ $self->AddSens($sens);
+ } # creation du hash ref_site_sens et d'une ref dessus
+ return $self->GetSens($sens);
+}
+sub GetSensIndexList {
+ my $self=shift;
+ return keys(%{$self->{"sens_struct"}});
+}
+sub GetSensList {
+ my $self=shift;
+ return values(%{$self->{"sens_struct"}});
+}
+
+sub NewSens {
+ my $self=shift;
+ my $sens=shift;
+
+ die "This method needs to be overwriten\n";
+}
+
+1;
diff --git a/trunk/ALTree/SiteCollection.pm b/trunk/ALTree/SiteCollection.pm
new file mode 100644
index 0000000000000000000000000000000000000000..3d9b83d66768d79639d1324e040ae71e4f4f3997
--- /dev/null
+++ b/trunk/ALTree/SiteCollection.pm
@@ -0,0 +1,41 @@
+package ALTree::SiteCollection;
+
+################################################################
+################################################################
+####################### SiteCollection ########################
+################################################################
+################################################################
+
+use base 'ALTree::Base';
+
+sub InitSiteCollection {
+ my $self=shift;
+ $self->_init("sites" => {});
+}
+
+sub AddSite {
+ my $self=shift;
+ my $site=shift;
+ my $site_nb;
+ $site_nb=$site->GetSiteNb();
+ $self->{"sites"}->{$site_nb}=$site;
+}
+sub GetSite {
+ my $self=shift;
+ my $site_nb=shift;
+ #my $site=$self->{"sites"}->{$site_nb};
+ #if (not defined($site)) {
+ #die "The site number $site_nb does not exist";
+ #}
+ return $self->{"sites"}->{$site_nb};
+}
+sub HasSiteIndex {
+ my $self=shift;
+ my $site_nb=shift;
+ return exists($self->{"sites"}->{$site_nb});
+}
+sub GetSitesList {
+ my $self=shift;
+ return values(%{$self->{"sites"}});
+}
+1;
diff --git a/trunk/ALTree/SitePerForet.pm b/trunk/ALTree/SitePerForet.pm
new file mode 100644
index 0000000000000000000000000000000000000000..bbfbb4d8d39db31a38eabf458f4db313fead8376
--- /dev/null
+++ b/trunk/ALTree/SitePerForet.pm
@@ -0,0 +1,150 @@
+package ALTree::SitePerForet;
+
+################################################################
+################################################################
+####################### SitePerForet ##########################
+################################################################
+################################################################
+
+use base qw(ALTree::Base ALTree::Site);
+use sort '_quicksort';
+
+sub New { # [classe] site_nb
+ my $class=shift;
+ my $self={};
+ my $site_nb=shift;
+ bless($self, $class);
+ $self->InitSite($site_nb);
+ $self->_init("nb_mut" => 0, @_);
+ return $self;
+}
+
+sub NewSens {
+ my $self=shift;
+ my $sens=shift;
+ return ALTree::SiteSensPerForet->New($sens, $self);
+}
+
+sub mysort {
+ my $func=shift;
+ my @tab=@_;
+
+ my @tab2=();
+
+ if (scalar(@tab) == 0) {
+ return @tab2;
+ }
+ # print "Site ", $tab[0]->GetSiteNb(), "\n";
+# foreach my $sens (@tab) {
+# print $sens->GetVi()," ", $sens->GetSensLabel(), "\n";
+# }
+ my $size;
+ while (($size=scalar(@tab)) > 1) {
+ my $min=0;
+ for(my $i=1; $i<$size; $i++) {
+ if ($func->($tab[$i], $tab[$min]) < 0) {
+ $min=$i;
+ }
+ }
+ push @tab2, $tab[$min];
+# print "min=$min adding ",$tab[$min]->GetSensLabel(),"\n";
+# print "Old tab\n";
+# foreach my $sens (@tab) {
+# print $sens->GetVi()," ", $sens->GetSensLabel(), "\n";
+# }
+ #my @tab3=splice(@tab, $min, 1);
+ my @tab3;
+ for (my $i=0; $i<=$#tab; $i++) {
+ if ($i != $min) {
+ push @tab3, $tab[$i];
+ }
+ }
+# print "NewTab\n";
+# foreach my $sens (@tab3) {
+# print $sens->GetVi()," ", $sens->GetSensLabel(), "\n";
+# }
+ @tab=@tab3;
+ }
+ push @tab2, $tab[0];
+# print "Site ", $tab[0]->GetSiteNb(), " result\n";
+# foreach my $sens (@tab2) {
+# print $sens->GetVi()," ", $sens->GetSensLabel(), "\n";
+# }
+ return @tab2;
+
+}
+
+sub functrie {
+ my $a=shift;
+ my $b=shift;
+ #print "a=$a, b=$b\n";
+ #if (not defined($a)) {
+ #return 0;
+ #print "a=$a b=$b\n";
+ #die "beauk\n";
+ #}
+ # my $value=($b->GetVi() <=> $a->GetVi());
+ # print "Comparing ", $b->GetVi(), " and ", $a->GetVi(), " = $value\n";
+ # return $value;#
+ return ($b->GetVi() <=> $a->GetVi());
+}
+
+sub _EnsureViMax {
+ my($self)=shift;
+ if (not exists ($self->{"V_i_max"})) {
+ my @toto=$self->GetSensList();
+ #print "site: ", $self->GetSiteNb(), "\n";
+ #for my $ref (@toto) {
+ #print "Ref: $ref\n";
+ #}
+ my @tab_trie=mysort \&functrie, @toto;
+ #for my $ref (@toto) {
+ #print "Ref: $ref\n";
+ #}
+
+ #my @tab3;
+ #for (my $i=0; $i<=$#toto; $i++) {
+ # print "value $i = $toto[$i]\n";
+ # push @tab3, $toto[$i];
+ #}
+
+ #my @tab_trie=sort {
+ # $b->GetVi() <=> $a->GetVi();
+ #} @tab3;
+
+ my($Vimax)=$self->{"V_i_max"}=$tab_trie[0]->GetVi();
+ for (my $i=1; $i<=$#tab_trie; $i++) {
+ if ($tab_trie[$i]->GetVi() != $Vimax) {
+ splice(@tab_trie, $i); # Elimine tout à partir de indice $i
+ last;
+ }
+ }
+ #print "Vi max : ", $Vimax, "\n";
+ $self->{"V_i_max_tab"}=\@tab_trie;
+ }
+}
+sub GetViMax {
+ my $self=shift;
+ $self->_EnsureViMax();
+ return $self->{"V_i_max"};
+}
+sub GetViMaxSens {
+ my($self)=shift;
+ my($index)=shift;
+ $self->_EnsureViMax();
+ return $self->{"V_i_max_tab"}->[$index];
+}
+#NbViMaxSens() => nombre sitesensperforet
+sub NbViMaxSens {
+ my($self)=shift;
+ $self->_EnsureViMax();
+ return (scalar @{$self->{"V_i_max_tab"}});
+}
+#GetViMaxSensList() => array de tous les sitessensperforet (avec Vi==ViMax)
+sub GetViMaxSensList {
+ my($self)=shift;
+ $self->_EnsureViMax();
+ return @{$self->{"V_i_max_tab"}}; # Comment ça marche ce truc?
+}
+
+1;
diff --git a/trunk/ALTree/SitePerTree.pm b/trunk/ALTree/SitePerTree.pm
new file mode 100644
index 0000000000000000000000000000000000000000..d70fdc78440053d59fdfc87ceda2f04de39739b8
--- /dev/null
+++ b/trunk/ALTree/SitePerTree.pm
@@ -0,0 +1,33 @@
+package ALTree::SitePerTree;
+
+################################################################
+################################################################
+####################### SitePerTree ##########################
+################################################################
+################################################################
+
+use base qw(ALTree::Base ALTree::Site);
+use ALTree::SiteSensPerTree;
+
+# Structure SitePerTree
+# "site_nb" -> Integer
+# "sens_struct" -> Hash of ('sens_label' -> SiteSens)
+# "nb_mut" -> Integer
+
+sub New { # [classe] site_nb
+ my $class=shift;
+ my $self={};
+ my $site_nb=shift;
+ bless($self, $class);
+ $self->InitSite($site_nb);
+ $self->_init("nb_mut" => 0, @_);
+ return $self;
+}
+
+sub NewSens {
+ my $self=shift;
+ my $sens=shift;
+ return ALTree::SiteSensPerTree->New($sens, $self);
+}
+
+1;
diff --git a/trunk/ALTree/SiteSens.pm b/trunk/ALTree/SiteSens.pm
new file mode 100644
index 0000000000000000000000000000000000000000..ace170c5c74319f7fc35cb6abe53cdae5e242289
--- /dev/null
+++ b/trunk/ALTree/SiteSens.pm
@@ -0,0 +1,62 @@
+package ALTree::SiteSens;
+
+################################################################
+################################################################
+####################### SiteSens ########################
+################################################################
+################################################################
+
+use base 'ALTree::Base';
+
+# Structure SiteSens
+# "site_struct" -> Site
+# "sens" -> Sens
+# "rev" -> SiteSens
+
+sub InitSiteSens { # [Obj] Sens_label SiteSens
+ my $self=shift;
+ my $sens=shift;
+ my $site=shift;
+
+ $self->_init("sens" => $sens, "site_struct" => $site, @_);
+ $self->Debug("creating SiteSens $sens\n");
+}
+
+sub GetSensLabel {
+ my $self=shift;
+ return $self->{"sens"}->GetLabel();
+}
+
+sub GetSensStruct {
+ my $self=shift;
+ return $self->{"sens"};
+}
+
+sub GetSite {
+ my $self=shift;
+ return $self->{"site_struct"};
+}
+
+sub GetSiteNb {
+ my $self=shift;
+ return $self->GetSite()->GetSiteNb();
+}
+
+sub LinkRev {
+ my $siteSens=shift;
+ my $siteSensRev=shift;
+
+ $siteSens->{'rev'}=$siteSensRev;
+ $siteSensRev->{'rev'}=$siteSens;
+}
+
+sub GetSensRev {
+ my $self=shift;
+
+ if (not defined($self->{'rev'})) {
+ die "LinkRev not called\n";
+ }
+ return $self->{'rev'};
+}
+
+1;
diff --git a/trunk/ALTree/SiteSensPerForet.pm b/trunk/ALTree/SiteSensPerForet.pm
new file mode 100644
index 0000000000000000000000000000000000000000..84e33c15f6732ca50f0505bcc8259abacff37ac4
--- /dev/null
+++ b/trunk/ALTree/SiteSensPerForet.pm
@@ -0,0 +1,37 @@
+package ALTree::SiteSensPerForet;
+
+################################################################
+################################################################
+####################### SiteSensPerForet #######################
+################################################################
+################################################################
+
+use base qw(ALTree::Base ALTree::SiteSens);
+
+# Structure SiteSensPerForet
+# "site_struct" -> Site
+# "sens_label" -> String
+# "V_i" -> Float
+
+sub New { # [classe] sens_label site_struct
+ my $class=shift;
+ my $self={};
+ my $sens=shift;
+ my $site=shift;
+ bless($self, $class);
+ $self->InitSiteSens($sens, $site);
+ $self->_init("V_i" => 0, @_);
+ return $self;
+}
+
+sub PlusVi {
+ my $self=shift;
+ my $value=shift;
+ $self->{"V_i"} += $value;
+}
+sub GetVi {
+ my $self=shift;
+ return $self->{"V_i"};
+}
+
+1;
diff --git a/trunk/ALTree/SiteSensPerTree.pm b/trunk/ALTree/SiteSensPerTree.pm
new file mode 100644
index 0000000000000000000000000000000000000000..fd74c5329129b8c5a3fe239a90503fcc6aba0638
--- /dev/null
+++ b/trunk/ALTree/SiteSensPerTree.pm
@@ -0,0 +1,125 @@
+package ALTree::SiteSensPerTree;
+
+################################################################
+################################################################
+####################### SiteSensPerTree ########################
+################################################################
+################################################################
+
+use base qw(ALTree::Base ALTree::SiteSens);
+
+# Structure SiteSens
+# "site_struct" -> Site
+# "sens_label" -> String
+# "node_list" -> Array of (Node)
+# "m_it" -> Interger # nb mutation of this chage in the tree
+# "R_it" -> Interger # nb co-mutations of this change with character S
+# "V_it" -> Integer # (R_it-E_it)/sqrt(E_it)
+
+sub New { # [classe] sens_label site_struct
+ my $class=shift;
+ my $self={};
+ my $sens=shift;
+ my $site=shift;
+ bless($self, $class);
+ $self->InitSiteSens($sens, $site);
+ $self->_init("node_list" => [], "R_it" => 0, @_);
+ return $self;
+}
+
+# Appelé par Node->AddApo
+sub _AddNode {
+ my $self=shift;
+ my $node=shift;
+ if (exists($self->{"m_it"})) {
+ die "_AddNode called after GetMit";
+ }
+ push @{$self->{"node_list"}}, $node;
+}
+# Appelé par Node->DeleteAllApo
+sub _DeleteNode {
+ my $self=shift;
+ my $node=shift;
+ my @new_node_list=grep { $_ != $node } @{$self->{"node_list"}};
+ if (scalar(@new_node_list)+1 != $self->NbNodes()) {
+ die "Error while removing a node from a SiteSensPerTree";
+ }
+ $self->{"node_list"}=\@new_node_list;
+}
+sub NbNodes {
+ my $self=shift;
+
+ return scalar (@{$self->{"node_list"}});
+}
+sub GetNode {
+ my $self=shift;
+ my $index=shift;
+ return $self->{"node_list"}->[$index];
+}
+sub GetNodesList {
+ my $self=shift;
+ return @{$self->{"node_list"}};
+}
+
+sub SetStep {
+ my $self=shift;
+ my $step=shift;
+ $self->{"Step"}=$step;
+}
+
+sub GetStep {
+ my $self=shift;
+ my $step=shift;
+ return $self->{"Step"};
+}
+
+sub GetMit {
+ my($self)=shift;
+ if (not exists($self->{"m_it"})) {
+ $self->{"m_it"}=$self->NbNodes();
+ }
+ return ($self->{"m_it"});
+}
+
+sub IncRit {
+ my($self)=shift;
+ if (exists($self->{"V_it"})) {
+ die "IncRit called after GetVit";
+ }
+ $self->{"R_it"}++;
+}
+sub GetRit {
+ my($self)=shift;
+ return ($self->{"R_it"});
+}
+
+sub GetVit {
+ my $self=shift;
+
+ my $Rit=$self->GetRit();
+ my $Eit=$self->GetEit();
+
+ if (not exists($self->{"V_it"})) {
+ if ($Eit == 0) {
+ $self->{"V_it"}=0;
+ } else {
+ $self->{"V_it"}=($Rit-$Eit)/sqrt($Eit);
+ }
+ }
+ return ($self->{"V_it"});
+}
+
+sub SetEit {
+ my($self)=shift;
+ my($value)=shift;
+ if (exists($self->{"V_it"})) {
+ die "SetEit called after GetVit";
+ }
+ $self->{"E_it"}=$value;
+}
+
+sub GetEit {
+ my($self)=shift;
+ return ($self->{"E_it"});
+}
+1;
diff --git a/trunk/ALTree/Tree.pm b/trunk/ALTree/Tree.pm
new file mode 100644
index 0000000000000000000000000000000000000000..331bf680a624098dbdd9342d37a800eecfeab307
--- /dev/null
+++ b/trunk/ALTree/Tree.pm
@@ -0,0 +1,149 @@
+package ALTree::Tree;
+
+################################################################
+################################################################
+####################### Tree ########################
+################################################################
+################################################################
+
+use base qw(ALTree::Base ALTree::SiteCollection);
+
+# "nodes" -> Hash of ('id' -> Node)
+# "sites" -> Hash of ('site_nb' -> SitePerTree)
+
+sub New { # [classe]
+ my $class=shift;
+ my $self={};
+ bless($self, $class);
+ $self->InitSiteCollection();
+ $self->_init("nodes" => {}, @_);
+ $self->Debug("creating Tree\n");
+ return $self;
+}
+
+sub AddNode {
+ my $self=shift;
+ my $node=shift;
+
+ my $id=$node->GetId();
+ $self->{"nodes"}->{$id}=$node;
+}
+sub GetNode {
+ my $self=shift;
+ my $id=shift;
+ if (defined ($self->{"nodes"}->{$id})) {
+ return $self->{"nodes"}->{$id};
+ } else {
+ return undef;
+ }
+}
+sub HasNodeIndex {
+ my $self=shift;
+ my $id=shift;
+ return exists($self->{"nodes"}->{$id});
+}
+sub GetNodesIndexList {
+ my $self=shift;
+ return keys(%{$self->{"nodes"}});
+}
+sub GetNodesList {
+ my $self=shift;
+ return values(%{$self->{"nodes"}});
+}
+
+#sub _SetOutgroup {
+# my $self=shift;
+# my($outgroup)=shift;
+# $self->{"outgroup"}=$outgroup;
+#}
+sub GetOutgroup {
+ my $self=shift;
+ if (not exists($self->{"outgroup"})) {
+ FIND: {
+ foreach my $clef ($self->GetNodesIndexList()) {
+ if ($clef eq "H000") {
+ $self->{"outgroup"}=$self->GetNode($clef);
+ last FIND;
+ }
+ }
+ die "No outgroup corresponding to id=H000 identified in the tree\n";
+ }
+ }
+ return ($self->{"outgroup"});
+}
+
+sub SetNbBrNonNulle {
+ my $self=shift;
+ my($value)=shift;
+ $self->{"nb_br_non_nulle"}=$value;
+}
+sub GetNbBrNonNulle {
+ my $self=shift;
+ return ($self->{"nb_br_non_nulle"});
+}
+
+sub _SetRoot {
+ my $self=shift;
+
+ my(@roots);
+ #print STDERR "nodes: \n";
+ foreach my $node ($self->GetNodesList()) {
+ if (not $node->HasFather()) {
+ push @roots, $node;
+ #print STDERR "root: ", $node->Name(), "\n";
+ }
+ #else { print STDERR "node: ", $node->Name(), " father ", $node->GetFather()->Name(), "\n"; }
+ }
+ #Verification that there is only one root
+ if (scalar(@roots) !=1) {
+ die "error in the tree: ", scalar(@roots), " roots for the tree!\n";
+ }
+ $self->{"root"}=$roots[0];
+}
+sub GetRoot {
+ my $self=shift;
+ if (not exists($self->{"root"})) {
+ $self->_SetRoot();
+ }
+ return ($self->{"root"});
+}
+
+sub ChangeRoot {
+ my $self=shift;
+ my $newroot=shift;
+
+ if ($newroot == $self->GetRoot()) {
+ return;
+ }
+ my $oldfather=$newroot->GetFather();
+ if (not defined($oldfather)) {
+ die ("Non root node of the tree has no father\n"
+ ."Do you use a node of the correct tree ?");
+ }
+ $self->ChangeRoot($oldfather);
+
+ # Some integrity tests...
+ if ($oldfather->NbApo() != 0) {
+ die "Root has apomorphies !";
+ }
+ if ($oldfather->GetBrLen() != 0) {
+ die "Root has non null BrLen !";
+ }
+
+ foreach my $apo ($newroot->GetApoList()) {
+ $oldfather->AddApo($apo->GetSensRev());
+ }
+ $newroot->DeleteAllApo();
+ #print "Setting BRLen to ",$newroot->GetBrLen()," for ", $oldfather->Name()," from ", $newroot->Name(),"\n";
+ $oldfather->SetBrLen($newroot->GetBrLen());
+ $newroot->SetBrLen(0);
+
+ $oldfather->SetFather($newroot);
+ $newroot->SetFather(undef);
+ $newroot->AddChild($oldfather);
+ $oldfather->DeleteChild($newroot);
+
+ $self->{"root"}=$newroot;
+}
+
+1;
diff --git a/trunk/ALTree/Utils.pm b/trunk/ALTree/Utils.pm
new file mode 100644
index 0000000000000000000000000000000000000000..185d16e83a1530ed9bcca4f7e4e061522755169a
--- /dev/null
+++ b/trunk/ALTree/Utils.pm
@@ -0,0 +1,67 @@
+package ALTree::Utils;
+use Pod::Usage;
+
+use strict;
+
+BEGIN {
+ use Exporter ();
+ use vars qw($VERSION @ISA @EXPORT @EXPORT_OK %EXPORT_TAGS);
+
+ # set the version for version checking
+ #$VERSION = 1.00;
+ # if using RCS/CVS, this may be preferred
+ #$VERSION = do { my @r = (q$Revision$ =~ /\d+/g); sprintf "%d."."%02d" x $#r, @r }; # must be all one line, for MakeMaker
+
+ @ISA = qw(Exporter);
+ @EXPORT = qw(); #(&func1 &func2 &func4);
+ %EXPORT_TAGS = ( ); # eg: TAG => [ qw!name1 name2! ],
+
+ # your exported package globals go here,
+ # as well as any optionally exported functions
+ @EXPORT_OK = qw(&erreur &internal_error);
+}
+use vars @EXPORT_OK;
+
+
+sub erreur
+{
+ my $msg=shift;
+ my $use_pod=shift;
+
+ if (not defined($use_pod) or $use_pod) {
+ pod2usage("Error: ".$msg);
+ } else {
+ print STDERR "Error: ".$msg;
+ exit 1;
+ }
+}
+
+sub internal_error
+{
+ my $msg=shift;
+
+ die("Internal error: $msg\n".
+ "Please, report this bug (with all is needed to reproduce it) to:\n".
+ "bardel\@vjf.inserm.fr\n");
+}
+
+1;
+
+package DataType;
+use constant SNP => 0;
+use constant DNA => 1;
+
+package PhylProg;
+use constant PHYLIP => 0;
+use constant PAUP => 1;
+use constant PAML => 2;
+
+package ANC;
+use constant Rooted => 0;
+use constant Unrooted => 1;
+use constant OutGroup => 2;
+
+no strict;
+
+@Name=("rooted using an ancestral sequence",
+ "unrooted", "rooted using an outgroup");
diff --git a/trunk/CUtils/.cvsignore b/trunk/CUtils/.cvsignore
new file mode 100644
index 0000000000000000000000000000000000000000..f3c7a7c5da68804a1bdf391127ba34aed33c3cca
--- /dev/null
+++ b/trunk/CUtils/.cvsignore
@@ -0,0 +1 @@
+Makefile
diff --git a/trunk/CUtils/CUtils.xs b/trunk/CUtils/CUtils.xs
new file mode 100644
index 0000000000000000000000000000000000000000..2cbfd78f7217e43ca6f6b9f75ccdf56264346310
--- /dev/null
+++ b/trunk/CUtils/CUtils.xs
@@ -0,0 +1,103 @@
+#include "EXTERN.h"
+#include "perl.h"
+#include "XSUB.h"
+
+#include "ppport.h"
+
+#include <c_sources/fisher.h>
+#include <c_sources/chisq.h>
+#include <c_sources/double_permutation.h>
+
+#include "const-c.inc"
+
+MODULE = ALTree::CUtils PACKAGE = ALTree::CUtils
+
+INCLUDE: const-xs.inc
+
+double
+bilateral(a, b, c, d)
+ double a
+ double b
+ double c
+ double d
+
+double
+critchi(p, df)
+ double p
+ int df
+
+double
+left(a, b, c, d)
+ double a
+ double b
+ double c
+ double d
+
+double
+pochisq(x, df)
+ double x
+ int df
+
+double
+right(a, b, c, d)
+ double a
+ double b
+ double c
+ double d
+
+SV *
+double_permutation(nb_sample, nb_chi2, data)
+ int nb_sample
+ int nb_chi2
+ SV * data
+ INIT:
+ matrice_t mat;
+ replicat_t rep;
+ int i,j,n;
+ datatype_t min;
+ HV * rh;
+ AV * ra;
+ CODE:
+ //fprintf(stderr, "\nSTART(%i, %i)\n", nb_sample, nb_chi2);
+ if ((nb_sample <= 0)
+ || (nb_chi2 <= 0)
+ || (!SvROK(data))
+ || (SvTYPE(SvRV(data)) != SVt_PVAV)
+ || (av_len((AV *)SvRV(data)) != nb_sample*nb_chi2-1))
+ {
+ XSRETURN_UNDEF;
+ }
+ rh = (HV *)sv_2mortal((SV *)newHV());
+
+ mat=alloc_matrice(nb_sample, nb_chi2);
+ rep=alloc_replicat(nb_chi2);
+
+ n=0;
+ for (i=0; i<nb_sample; i++) {
+ for (j=0; j<nb_chi2; j++) {
+ //fprintf(stderr, "[%i][%i](%i)...\n", i, j, n);
+ /* Attention: on place un réplicat par colonne
+ * (et pas par ligne) */
+ mat[j][i]=SvNV(*av_fetch((AV *)SvRV(data), n, 0));
+ //fprintf(stderr, "[%i][%i](%i)=%lf\n", i, j, n,mat[j][i]);
+ n++;
+ }
+ }
+ min=calcul(nb_sample, nb_chi2, mat, rep);
+
+ hv_store(rh, "pmin", 4, newSVnv(min), 0);
+
+ ra = (AV *)sv_2mortal((SV *)newAV());
+ for (j=0; j<nb_chi2; j++) {
+ av_push(ra, newSVnv(rep[j]));
+ //fprintf(stderr, "chi2[%i]=%lf\n", j ,rep[j]);
+ }
+
+ hv_store(rh, "chi2", 4, newRV((SV *)ra), 0);
+
+ free_matrice(mat, nb_sample, nb_chi2);
+ free_replicat(rep);
+
+ RETVAL = newRV((SV *)rh);
+ OUTPUT:
+ RETVAL
diff --git a/trunk/CUtils/Makefile.PL b/trunk/CUtils/Makefile.PL
new file mode 100644
index 0000000000000000000000000000000000000000..1933dda22dea7a79928a1551a69f0c3b76d6ad29
--- /dev/null
+++ b/trunk/CUtils/Makefile.PL
@@ -0,0 +1,49 @@
+use 5.008;
+use ExtUtils::MakeMaker;
+# See lib/ExtUtils/MakeMaker.pm for details of how to influence
+# the contents of the Makefile that is written.
+WriteMakefile(
+ NAME => 'ALTree::CUtils',
+ VERSION_FROM => 'lib/ALTree/CUtils.pm', # finds $VERSION
+ PREREQ_PM => {}, # e.g., Module::Name => 1.1
+ ($] >= 5.005 ? ## Add these new keywords supported since 5.005
+ (ABSTRACT_FROM => 'lib/ALTree/CUtils.pm', # retrieve abstract from module
+ AUTHOR => 'Claire Bardel <bardel@vjf.inserm.fr>') : ()),
+ LIBS => ['-lm '], # e.g., '-lm'
+ DEFINE => '', # e.g., '-DHAVE_SOMETHING'
+ INC => '-I.', # e.g., '-I. -I/usr/include/other'
+ # Un-comment this if you add C files to link with later:
+ # OBJECT => '$(O_FILES)', # link all the C files too
+ MYEXTLIB => 'c_sources/libaltree-cutils$(LIB_EXT)',
+);
+if (eval {require ExtUtils::Constant; 1}) {
+ # If you edit these definitions to change the constants used by this module,
+ # you will need to use the generated const-c.inc and const-xs.inc
+ # files to replace their "fallback" counterparts before distributing your
+ # changes.
+ my @names = (qw());
+ ExtUtils::Constant::WriteConstants(
+ NAME => 'ALTree::CUtils',
+ NAMES => \@names,
+ DEFAULT_TYPE => 'IV',
+ C_FILE => 'const-c.inc',
+ XS_FILE => 'const-xs.inc',
+ );
+
+}
+else {
+ use File::Copy;
+ use File::Spec;
+ foreach my $file ('const-c.inc', 'const-xs.inc') {
+ my $fallback = File::Spec->catfile('fallback', $file);
+ copy ($fallback, $file) or die "Can't copy $fallback to $file: $!";
+ }
+}
+sub MY::postamble {
+'
+$(MYEXTLIB): c_sources/Makefile
+ $(MAKE) -C c_sources $(PASSTHRU)
+';
+}
+
+
diff --git a/trunk/CUtils/c_sources/.cvsignore b/trunk/CUtils/c_sources/.cvsignore
new file mode 100644
index 0000000000000000000000000000000000000000..f3c7a7c5da68804a1bdf391127ba34aed33c3cca
--- /dev/null
+++ b/trunk/CUtils/c_sources/.cvsignore
@@ -0,0 +1 @@
+Makefile
diff --git a/trunk/CUtils/c_sources/Makefile.PL b/trunk/CUtils/c_sources/Makefile.PL
new file mode 100644
index 0000000000000000000000000000000000000000..37300aa99f56dce783b0db160fc8312857cf4bff
--- /dev/null
+++ b/trunk/CUtils/c_sources/Makefile.PL
@@ -0,0 +1,24 @@
+
+use ExtUtils::MakeMaker;
+$Verbose = 1;
+WriteMakefile(
+ NAME => 'ALTree::CUtils',
+ SKIP => [qw(all static static_lib dynamic dynamic_lib)],
+ clean => {'FILES' => 'libaltree-cutils$(LIB_EXT)'},
+);
+
+sub MY::top_targets {
+ '
+all :: static
+
+pure_all :: static
+
+static :: libaltree-cutils$(LIB_EXT)
+
+libaltree-cutils$(LIB_EXT): $(O_FILES)
+ $(AR) cr libaltree-cutils$(LIB_EXT) $(O_FILES)
+ $(RANLIB) libaltree-cutils$(LIB_EXT)
+
+';
+}
+
diff --git a/trunk/CUtils/c_sources/chisq.c b/trunk/CUtils/c_sources/chisq.c
new file mode 100644
index 0000000000000000000000000000000000000000..41bd1be9012c912af45f266b1729908f9b1c7f2d
--- /dev/null
+++ b/trunk/CUtils/c_sources/chisq.c
@@ -0,0 +1,152 @@
+/*
+ Module: chisq.c
+ Purpose: compute approximations to chisquare distribution probabilities
+ Contents: pochisq(), critchi()
+ Uses: poz() in z.c (Algorithm 209)
+ Programmer: Gary Perlman
+ Organization: Wang Institute, Tyngsboro, MA 01879
+ Tester: compile with -DCHISQTEST to include main program
+ Copyright: none
+ Tabstops: 4
+*/
+
+/*LINTLIBRARY*/
+#include <math.h>
+#include "z.h"
+/*static char sccsfid[] = "@(#) chisq.c 5.2 (|stat) 12/08/86";*/
+
+#define CHI_EPSILON 0.000001 /* accuracy of critchi approximation */
+#define CHI_MAX 99999.0 /* maximum chi square value */
+
+#define LOG_SQRT_PI 0.5723649429247000870717135 /* log (sqrt (pi)) */
+#define I_SQRT_PI 0.5641895835477562869480795 /* 1 / sqrt (pi) */
+#define BIGX 20.0 /* max value to represent exp (x) */
+#define ex(x) (((x) < -BIGX) ? 0.0 : exp (x))
+
+double pochisq ();
+double critchi ();
+
+#ifdef CHISQTEST
+double Prob[] = { .10, .05, .01, .005, .001, -1.0 };
+main ()
+ {
+ int df;
+ int p;
+ printf ("%-4s ", "df");
+ for (p = 0; Prob[p] > 0.0; p++)
+ printf ("%8.3f ", Prob[p]);
+ putchar ('\n');
+ for (df = 1; df < 30; df++)
+ {
+ printf ("%4d ", df);
+ for (p = 0; Prob[p] > 0.0; p++)
+ printf ("%8.3f ", critchi (Prob[p], df));
+ putchar ('\n');
+ }
+ }
+#endif /* CHISQTEST */
+
+#ifdef CHISQTEST2
+#include <stdio.h>
+#include <stdlib.h>
+double chi2 = .10;
+int main (int argc, char** argv)
+ {
+ int df;
+ //int p;
+ if (argc != 3) {
+ printf("usage: %s chi2 df\n", argv[0]);
+ exit(1);
+ }
+ chi2=atof(argv[1]);
+ df=atoi(argv[2]);
+ printf ("%lf\n", pochisq (chi2, df));
+ return 0;
+ }
+#endif /* CHISQTEST */
+
+/*FUNCTION pochisq: probability of chi sqaure value */
+/*ALGORITHM Compute probability of chi square value.
+ Adapted from:
+ Hill, I. D. and Pike, M. C. Algorithm 299
+ Collected Algorithms for the CACM 1967 p. 243
+ Updated for rounding errors based on remark in
+ ACM TOMS June 1985, page 185
+*/
+double
+pochisq (x, df)
+double x; /* obtained chi-square value */
+int df; /* degrees of freedom */
+ {
+ double a, y, s;
+ double e, c, z;
+ double poz (); /* computes probability of normal z score */
+ int even; /* true if df is an even number */
+
+ if (x <= 0.0 || df < 1)
+ return (1.0);
+
+ a = 0.5 * x;
+ even = (2*(df/2)) == df;
+ if (df > 1)
+ y = ex (-a);
+ s = (even ? y : (2.0 * poz (-sqrt (x))));
+ if (df > 2)
+ {
+ x = 0.5 * (df - 1.0);
+ z = (even ? 1.0 : 0.5);
+ if (a > BIGX)
+ {
+ e = (even ? 0.0 : LOG_SQRT_PI);
+ c = log (a);
+ while (z <= x)
+ {
+ e = log (z) + e;
+ s += ex (c*z-a-e);
+ z += 1.0;
+ }
+ return (s);
+ }
+ else
+ {
+ e = (even ? 1.0 : (I_SQRT_PI / sqrt (a)));
+ c = 0.0;
+ while (z <= x)
+ {
+ e = e * (a / z);
+ c = c + e;
+ z += 1.0;
+ }
+ return (c * y + s);
+ }
+ }
+ else
+ return (s);
+ }
+
+/*FUNCTION critchi: compute critical chi square value to produce given p */
+double
+critchi (p, df)
+double p;
+int df;
+ {
+ double minchisq = 0.0;
+ double maxchisq = CHI_MAX;
+ double chisqval;
+
+ if (p <= 0.0)
+ return (maxchisq);
+ else if (p >= 1.0)
+ return (0.0);
+
+ chisqval = df / sqrt (p); /* fair first value */
+ while (maxchisq - minchisq > CHI_EPSILON)
+ {
+ if (pochisq (chisqval, df) < p)
+ maxchisq = chisqval;
+ else
+ minchisq = chisqval;
+ chisqval = (maxchisq + minchisq) * 0.5;
+ }
+ return (chisqval);
+ }
diff --git a/trunk/CUtils/c_sources/chisq.h b/trunk/CUtils/c_sources/chisq.h
new file mode 100644
index 0000000000000000000000000000000000000000..81bbdfc53209d1c17a6ee2cd5f4221ce2d2e74a6
--- /dev/null
+++ b/trunk/CUtils/c_sources/chisq.h
@@ -0,0 +1,4 @@
+
+double pochisq(double x, int df);
+double critchi(double p, int df);
+
diff --git a/trunk/CUtils/c_sources/double_permutation.c b/trunk/CUtils/c_sources/double_permutation.c
new file mode 100644
index 0000000000000000000000000000000000000000..e99875635aa0114369ba249fda49a362bc5a2c2a
--- /dev/null
+++ b/trunk/CUtils/c_sources/double_permutation.c
@@ -0,0 +1,184 @@
+
+#include <stdio.h>
+#include <stdlib.h>
+#include <unistd.h>
+
+#include "double_permutation.h"
+
+#define CALC_PVAL(count, nb_sample) \
+ ((datatype_t)(count-1))/* On s'enlève soi-même*/ \
+ /nb_sample
+
+
+int read_matrice(matrice_t mat, int nb_sample, int nb_chi2)
+{
+ int i, j;
+ datatype_t d;
+ int res;
+ for (i=0; i<nb_sample; i++) {
+ for (j=0; j<nb_chi2; j++) {
+ res=scanf(CONV, &d);
+ if (res!=1) {
+ fprintf(stderr, "Erreur de lecture. Probablement pas assez de données\n");
+ exit(1);
+ }
+ /* Attention: on place un réplicat par colonne
+ * (et pas par ligne) */
+ mat[j][i]=d;
+ }
+ }
+ return 0;
+}
+
+ensemble_t alloc_replicat(int nb_chi2)
+{
+ ensemble_t rep=NULL;
+ rep=malloc(nb_chi2*sizeof(datatype_t));
+ if (rep==NULL) {
+ goto err;
+ }
+ return rep;
+ err:
+ fprintf(stderr, "Erreur d'allocation mémoire. Aborting\n");
+ exit(1);
+}
+
+void free_replicat(ensemble_t rep)
+{
+ free(rep);
+}
+
+ensemble_t alloc_ensemble(int nb_sample)
+{
+ ensemble_t ens=NULL;
+ ens=malloc(nb_sample*sizeof(datatype_t));
+ if (ens==NULL) {
+ goto err;
+ }
+ return ens;
+ err:
+ fprintf(stderr, "Erreur d'allocation mémoire. Aborting\n");
+ exit(1);
+}
+
+void free_ensemble(ensemble_t ens)
+{
+ free(ens);
+}
+
+matrice_t alloc_matrice(int nb_sample, int nb_chi2)
+{
+ int i;
+ matrice_t mat=NULL;
+ mat=malloc(nb_chi2*sizeof(ensemble_t));
+ if (mat==NULL)
+ goto err;
+ for (i=0; i<nb_chi2; i++) {
+ mat[i]=alloc_ensemble(nb_sample);
+ }
+
+ return mat;
+ err:
+ fprintf(stderr, "Erreur d'allocation mémoire. Aborting\n");
+ exit(1);
+
+}
+
+void free_matrice(matrice_t mat, int nb_sample, int nb_chi2)
+{
+ int i;
+ for (i=0; i<nb_chi2; i++) {
+ free_ensemble(mat[i]);
+ }
+ free(mat);
+}
+
+inline static int count_superieur(ensemble_t ens, datatype_t val_ref, int nb_sample)
+{
+ int i, count=0;
+ for (i=0; i< nb_sample; i++) {
+ if (ens[i]>=val_ref) {
+ count++;
+ }
+ }
+ //printf( "count=%i\n", count);
+ return count;
+}
+
+inline static datatype_t pval_min(replicat_t rep, int nb_chi2)
+{
+ int i;
+ datatype_t ret=rep[0];
+ for (i=1; i<nb_chi2; i++) {
+ if (rep[i]<ret) {
+ ret=rep[i];
+ }
+ }
+ return ret;
+}
+
+datatype_t calcul(int nb_sample, int nb_chi2, matrice_t mat, replicat_t rep)
+{
+ int i, j;
+ ensemble_t ens_min_pval;
+ datatype_t min;
+ datatype_t local[nb_chi2];
+
+ ens_min_pval=alloc_ensemble(nb_sample);
+
+ i=0;
+ for (j=0; j<nb_chi2; j++) {
+ rep[j]=CALC_PVAL(count_superieur(mat[j], mat[j][i], nb_sample),
+ nb_sample);
+ //printf("cal rep[%i]=%lf\n", j, rep[j]);
+ }
+ ens_min_pval[i]=-pval_min(rep, nb_chi2);
+ //printf("pmin for sample %i: "CONV"\n", i, ens_min_pval[i]);
+
+ for (i=1; i<nb_sample; i++) {
+ for (j=0; j<nb_chi2; j++) {
+ local[j]=CALC_PVAL(count_superieur(mat[j], mat[j][i],
+ nb_sample),
+ nb_sample);
+ }
+ ens_min_pval[i]=-pval_min(local, nb_chi2);
+ //printf("pmin for sample %i: "CONV"\n", i, ens_min_pval[i]);
+ }
+ min=CALC_PVAL(count_superieur(ens_min_pval, ens_min_pval[0],
+ nb_sample),
+ nb_sample);
+
+ return min;
+}
+
+#ifdef MAIN_PROG
+int main(int argc, char *argv[])
+{
+ int nb_sample, nb_chi2;
+ matrice_t mat;
+ replicat_t rep;
+ int j;
+ datatype_t min;
+
+ nb_sample=atoi(argv[1]);
+ nb_chi2=atoi(argv[2]);
+
+ mat=alloc_matrice(nb_sample, nb_chi2);
+ rep=alloc_replicat(nb_chi2);
+
+ read_matrice(mat, nb_sample, nb_chi2);
+ //printf("Matrice lue\n");
+
+ min=calcul(nb_sample, nb_chi2, mat, rep);
+
+ for (j=0; j<nb_chi2; j++) {
+ printf("chi2 niveau %i, pval nc "CONV"\n", j+1, rep[j]);
+ }
+ printf("pmin corrigé: "CONV"\n", min);
+
+ free_matrice(mat, nb_sample, nb_chi2);
+ free_replicat(rep);
+
+ return 0;
+}
+#endif
diff --git a/trunk/CUtils/c_sources/double_permutation.h b/trunk/CUtils/c_sources/double_permutation.h
new file mode 100644
index 0000000000000000000000000000000000000000..669089543f54828be7d28968c3db160eba09c7cd
--- /dev/null
+++ b/trunk/CUtils/c_sources/double_permutation.h
@@ -0,0 +1,17 @@
+//#define CONV "%Le"
+//typedef long double datatype_t;
+
+#define CONV "%le"
+typedef double datatype_t;
+
+typedef datatype_t *ensemble_t;
+typedef ensemble_t *matrice_t;
+typedef datatype_t *replicat_t;
+
+ensemble_t alloc_replicat(int nb_chi2);
+void free_replicat(ensemble_t rep);
+
+matrice_t alloc_matrice(int nb_sample, int nb_chi2);
+void free_matrice(matrice_t mat, int nb_sample, int nb_chi2);
+
+datatype_t calcul(int nb_sample, int nb_chi2, matrice_t mat, replicat_t rep);
diff --git a/trunk/CUtils/c_sources/fisher.c b/trunk/CUtils/c_sources/fisher.c
new file mode 100644
index 0000000000000000000000000000000000000000..16945c81614843864ebba17d25875b0de0fca526
--- /dev/null
+++ b/trunk/CUtils/c_sources/fisher.c
@@ -0,0 +1,205 @@
+
+#include "./fisher.h"
+#include <math.h>
+
+typedef struct {
+ double bilateral;
+ double left;
+ double right;
+} result_t;
+
+static double lngamm(double z)
+// Reference: "Lanczos, C. 'A precision approximation
+// of the gamma function', J. SIAM Numer. Anal., B, 1, 86-96, 1964."
+// Translation of Alan Miller's FORTRAN-implementation
+// See http://lib.stat.cmu.edu/apstat/245
+{
+ double x = 0;
+ x += 0.1659470187408462e-06/(z+7);
+ x += 0.9934937113930748e-05/(z+6);
+ x -= 0.1385710331296526 /(z+5);
+ x += 12.50734324009056 /(z+4);
+ x -= 176.6150291498386 /(z+3);
+ x += 771.3234287757674 /(z+2);
+ x -= 1259.139216722289 /(z+1);
+ x += 676.5203681218835 /(z);
+ x += 0.9999999999995183;
+ return(log(x)-5.58106146679532777-z+(z-0.5)*log(z+6.5));
+}
+
+
+
+static double lnfact(double n)
+{
+ if(n<=1) return(0);
+ return(lngamm(n+1));
+}
+
+static double lnbico(double n,double k)
+{
+ return(lnfact(n)-lnfact(k)-lnfact(n-k));
+}
+
+static double hyper_323(double n11,double n1_,double n_1,double n)
+{
+ return(exp(lnbico(n1_,n11)+lnbico(n-n1_,n_1-n11)-lnbico(n,n_1)));
+}
+
+static double sn11,sn1_,sn_1,sn,sprob;
+static double hyper0(double n11i,double n1_i,double n_1i,double ni)
+{
+ if(!(n1_i||n_1i||ni))
+ {
+ if(!(((long long)n11i) % 10 == 0))
+ {
+ if(n11i==sn11+1)
+ {
+ sprob *= ((sn1_-sn11)/(n11i))*((sn_1-sn11)/(n11i+sn-sn1_-sn_1));
+ sn11 = n11i;
+ return sprob;
+ }
+ if(n11i==sn11-1)
+ {
+ sprob *= ((sn11)/(sn1_-n11i))*((sn11+sn-sn1_-sn_1)/(sn_1-n11i));
+ sn11 = n11i;
+ return sprob;
+ }
+ }
+ sn11 = n11i;
+ }
+ else
+ {
+ sn11 = n11i;
+ sn1_=n1_i;
+ sn_1=n_1i;
+ sn=ni;
+ }
+ sprob = hyper_323(sn11,sn1_,sn_1,sn);
+ return sprob;
+}
+
+static double hyper(double n11)
+{
+ return(hyper0(n11,0,0,0));
+}
+
+static double sleft,sright,sless,slarg;
+static double exact(double n11,double n1_,double n_1,double n)
+{
+ double p,i,j,prob;
+ double max=n1_;
+ double min;
+ if(n_1<max) max=n_1;
+ min = n1_+n_1-n;
+ if(min<0) min=0;
+ if(min==max)
+ {
+ sless = 1;
+ sright= 1;
+ sleft = 1;
+ slarg = 1;
+ return 1;
+ }
+ prob=hyper0(n11,n1_,n_1,n);
+ sleft=0;
+ p=hyper(min);
+ for(i=min+1; p<0.99999999*prob; i++)
+ {
+ sleft += p;
+ p=hyper(i);
+ }
+ i--;
+ if(p<1.00000001*prob) sleft += p;
+ else i--;
+ sright=0;
+ p=hyper(max);
+ for(j=max-1; p<0.99999999*prob; j--)
+ {
+ sright += p;
+ p=hyper(j);
+ }
+ j++;
+ if(p<1.00000001*prob) sright += p;
+ else j++;
+ if(abs(i-n11)<abs(j-n11))
+ {
+ sless = sleft;
+ slarg = 1 - sleft + prob;
+ }
+ else
+ {
+ sless = 1 - sright + prob;
+ slarg = sright;
+ }
+ return prob;
+}
+
+
+/* double left,right,twotail; */
+/* double exact22(double n11_,double n12_,double n21_,double n22_) */
+/* { */
+/* if(n11_<0) n11_ *= -1; */
+/* if(n12_<0) n12_ *= -1; */
+/* if(n21_<0) n21_ *= -1; */
+/* if(n22_<0) n22_ *= -1; */
+
+/* double n1_ = n11_+n12_; */
+/* double n_1 = n11_+n21_; */
+/* double n = n11_ +n12_ +n21_ +n22_; */
+/* double prob=exact(n11_,n1_,n_1,n); */
+/* left = sless; */
+/* right = slarg; */
+/* twotail = sleft+sright; */
+/* if(twotail>1) twotail=1; */
+
+/* "Left : p-value = "+ left + newline + */
+/* "Right : p-value = "+ right + newline + */
+/* "2-Tail : p-value = "+ twotail + */
+/* newline + "------------------------------------------"; */
+/* } */
+
+static result_t fisher(double n11, double n12, double n21, double n22)
+{
+ result_t res;
+ double n1_;
+ double n_1;
+ double n;
+ double prob;
+
+ if(n11<0) n11 *= -1;
+ if(n12<0) n12 *= -1;
+ if(n21<0) n21 *= -1;
+ if(n22<0) n22 *= -1;
+
+ n1_ = n11+n12;
+ n_1 = n11+n21;
+ n = n11 +n12 +n21 +n22;
+ prob=exact(n11,n1_,n_1,n);
+
+ res.bilateral=sleft+sright;
+ res.left=sless;
+ res.right=slarg;
+ if (res.bilateral>1) res.bilateral=1;
+ return res;
+}
+
+double bilateral(double a, double b, double c, double d)
+{
+ result_t res=fisher(a,b,c,d);
+ //return 1;
+ return res.bilateral;
+}
+
+double right(double a, double b, double c, double d)
+{
+ result_t res=fisher(a,b,c,d);
+ return res.right;
+}
+
+double left(double a, double b, double c, double d)
+{
+ result_t res=fisher(a,b,c,d);
+ return res.left;
+}
+
+
diff --git a/trunk/CUtils/c_sources/fisher.h b/trunk/CUtils/c_sources/fisher.h
new file mode 100644
index 0000000000000000000000000000000000000000..0752522d2c82c8ac30254fbf44b8dc9bb68bff01
--- /dev/null
+++ b/trunk/CUtils/c_sources/fisher.h
@@ -0,0 +1,5 @@
+
+double bilateral(double a, double b, double c, double d);
+double right(double a, double b, double c, double d);
+double left(double a, double b, double c, double d);
+
diff --git a/trunk/CUtils/c_sources/z.c b/trunk/CUtils/c_sources/z.c
new file mode 100644
index 0000000000000000000000000000000000000000..531daf8e8176fd0ee246fb8c135499a1d3384904
--- /dev/null
+++ b/trunk/CUtils/c_sources/z.c
@@ -0,0 +1,112 @@
+/*HEADER
+ Module: z.c
+ Purpose: compute approximations to normal z distribution probabilities
+ Programmer: Gary Perlman
+ Organization: Wang Institute, Tyngsboro, MA 01879
+ Tester: compile with -DZTEST to include main program
+ Copyright: none
+ Tabstops: 4
+*/
+
+/*LINTLIBRARY*/
+static char sccsfid[] = "@(#) z.c 5.1 (|stat) 12/26/85";
+#include <math.h>
+
+#define Z_EPSILON 0.000001 /* accuracy of critz approximation */
+#define Z_MAX 6.0 /* maximum meaningful z value */
+
+#include "z.h"
+
+#ifdef ZTEST
+main ()
+ {
+ double z;
+ printf ("%4s %10s %10s %10s\n",
+ "z", "poz(z)", "poz(-z)", "z'");
+ for (z = 0.0; z <= Z_MAX; z += .01)
+ {
+ printf ("%4.2f %10.6f %10.6f %10.6f\n",
+ z, poz (z), poz (-z), critz (poz (z)));
+ }
+ }
+#endif /* ZTEST */
+
+/*FUNCTION poz: probability of normal z value */
+/*ALGORITHM
+ Adapted from a polynomial approximation in:
+ Ibbetson D, Algorithm 209
+ Collected Algorithms of the CACM 1963 p. 616
+ Note:
+ This routine has six digit accuracy, so it is only useful for absolute
+ z values < 6. For z values >= to 6.0, poz() returns 0.0.
+*/
+double /*VAR returns cumulative probability from -oo to z */
+poz (z)
+double z; /*VAR normal z value */
+ {
+ double y, x, w;
+
+ if (z == 0.0)
+ x = 0.0;
+ else
+ {
+ y = 0.5 * fabs (z);
+ if (y >= (Z_MAX * 0.5))
+ x = 1.0;
+ else if (y < 1.0)
+ {
+ w = y*y;
+ x = ((((((((0.000124818987 * w
+ -0.001075204047) * w +0.005198775019) * w
+ -0.019198292004) * w +0.059054035642) * w
+ -0.151968751364) * w +0.319152932694) * w
+ -0.531923007300) * w +0.797884560593) * y * 2.0;
+ }
+ else
+ {
+ y -= 2.0;
+ x = (((((((((((((-0.000045255659 * y
+ +0.000152529290) * y -0.000019538132) * y
+ -0.000676904986) * y +0.001390604284) * y
+ -0.000794620820) * y -0.002034254874) * y
+ +0.006549791214) * y -0.010557625006) * y
+ +0.011630447319) * y -0.009279453341) * y
+ +0.005353579108) * y -0.002141268741) * y
+ +0.000535310849) * y +0.999936657524;
+ }
+ }
+ return (z > 0.0 ? ((x + 1.0) * 0.5) : ((1.0 - x) * 0.5));
+ }
+
+/*FUNCTION critz: compute critical z value to produce given probability */
+/*ALGORITHM
+ Begin with upper and lower limits for z values (maxz and minz)
+ set to extremes. Choose a z value (zval) between the extremes.
+ Compute the probability of the z value. Set minz or maxz, based
+ on whether the probability is less than or greater than the
+ desired p. Continue adjusting the extremes until they are
+ within Z_EPSILON of each other.
+*/
+double /*VAR returns z such that fabs (poz(p) - z) <= .000001 */
+critz (p)
+double p; /*VAR critical probability level */
+ {
+ double minz = -Z_MAX; /* minimum of range of z */
+ double maxz = Z_MAX; /* maximum of range of z */
+ double zval = 0.0; /* computed/returned z value */
+ double poz (), pval; /* prob (z) function, pval := poz (zval) */
+
+ if (p <= 0.0 || p >= 1.0)
+ return (0.0);
+
+ while (maxz - minz > Z_EPSILON)
+ {
+ pval = poz (zval);
+ if (pval > p)
+ maxz = zval;
+ else
+ minz = zval;
+ zval = (maxz + minz) * 0.5;
+ }
+ return (zval);
+ }
diff --git a/trunk/CUtils/c_sources/z.h b/trunk/CUtils/c_sources/z.h
new file mode 100644
index 0000000000000000000000000000000000000000..a265de41b1a18690da5476079072f0ea4c597068
--- /dev/null
+++ b/trunk/CUtils/c_sources/z.h
@@ -0,0 +1,3 @@
+double poz (double z);
+double critz (double p);
+
diff --git a/trunk/CUtils/const-c.inc b/trunk/CUtils/const-c.inc
new file mode 100644
index 0000000000000000000000000000000000000000..88ec41711c72a7ee4766c9830bb1ba4e2fadda70
--- /dev/null
+++ b/trunk/CUtils/const-c.inc
@@ -0,0 +1,55 @@
+#define PERL_constant_NOTFOUND 1
+#define PERL_constant_NOTDEF 2
+#define PERL_constant_ISIV 3
+#define PERL_constant_ISNO 4
+#define PERL_constant_ISNV 5
+#define PERL_constant_ISPV 6
+#define PERL_constant_ISPVN 7
+#define PERL_constant_ISSV 8
+#define PERL_constant_ISUNDEF 9
+#define PERL_constant_ISUV 10
+#define PERL_constant_ISYES 11
+
+#ifndef NVTYPE
+typedef double NV; /* 5.6 and later define NVTYPE, and typedef NV to it. */
+#endif
+#ifndef aTHX_
+#define aTHX_ /* 5.6 or later define this for threading support. */
+#endif
+#ifndef pTHX_
+#define pTHX_ /* 5.6 or later define this for threading support. */
+#endif
+
+static int
+constant (pTHX_ const char *name, STRLEN len) {
+ /* Initially switch on the length of the name. */
+ /* When generated this function returned values for the list of names given
+ in this section of perl code. Rather than manually editing these functions
+ to add or remove constants, which would result in this comment and section
+ of code becoming inaccurate, we recommend that you edit this section of
+ code, and use it to regenerate a new set of constant functions which you
+ then use to replace the originals.
+
+ Regenerate these constant functions by feeding this entire source file to
+ perl -x
+
+#!/usr/bin/perl -w
+use ExtUtils::Constant qw (constant_types C_constant XS_constant);
+
+my $types = {map {($_, 1)} qw()};
+my @names = (qw());
+
+print constant_types(); # macro defs
+foreach (C_constant ("ALTree::CUtils", 'constant', 'IV', $types, undef, 3, @names) ) {
+ print $_, "\n"; # C constant subs
+}
+print "#### XS Section:\n";
+print XS_constant ("ALTree::CUtils", $types);
+__END__
+ */
+
+ switch (len) {
+ }
+ return PERL_constant_NOTFOUND;
+}
+
diff --git a/trunk/CUtils/const-xs.inc b/trunk/CUtils/const-xs.inc
new file mode 100644
index 0000000000000000000000000000000000000000..1945c56373c2c602b85a9e98aa87618cf5500b4d
--- /dev/null
+++ b/trunk/CUtils/const-xs.inc
@@ -0,0 +1,87 @@
+void
+constant(sv)
+ PREINIT:
+#ifdef dXSTARG
+ dXSTARG; /* Faster if we have it. */
+#else
+ dTARGET;
+#endif
+ STRLEN len;
+ int type;
+ /* IV iv; Uncomment this if you need to return IVs */
+ /* NV nv; Uncomment this if you need to return NVs */
+ /* const char *pv; Uncomment this if you need to return PVs */
+ INPUT:
+ SV * sv;
+ const char * s = SvPV(sv, len);
+ PPCODE:
+ type = constant(aTHX_ s, len);
+ /* Return 1 or 2 items. First is error message, or undef if no error.
+ Second, if present, is found value */
+ switch (type) {
+ case PERL_constant_NOTFOUND:
+ sv = sv_2mortal(newSVpvf("%s is not a valid ALTree::CUtils macro", s));
+ PUSHs(sv);
+ break;
+ case PERL_constant_NOTDEF:
+ sv = sv_2mortal(newSVpvf(
+ "Your vendor has not defined ALTree::CUtils macro %s, used", s));
+ PUSHs(sv);
+ break;
+ /* Uncomment this if you need to return IVs
+ case PERL_constant_ISIV:
+ EXTEND(SP, 1);
+ PUSHs(&PL_sv_undef);
+ PUSHi(iv);
+ break; */
+ /* Uncomment this if you need to return NOs
+ case PERL_constant_ISNO:
+ EXTEND(SP, 1);
+ PUSHs(&PL_sv_undef);
+ PUSHs(&PL_sv_no);
+ break; */
+ /* Uncomment this if you need to return NVs
+ case PERL_constant_ISNV:
+ EXTEND(SP, 1);
+ PUSHs(&PL_sv_undef);
+ PUSHn(nv);
+ break; */
+ /* Uncomment this if you need to return PVs
+ case PERL_constant_ISPV:
+ EXTEND(SP, 1);
+ PUSHs(&PL_sv_undef);
+ PUSHp(pv, strlen(pv));
+ break; */
+ /* Uncomment this if you need to return PVNs
+ case PERL_constant_ISPVN:
+ EXTEND(SP, 1);
+ PUSHs(&PL_sv_undef);
+ PUSHp(pv, iv);
+ break; */
+ /* Uncomment this if you need to return SVs
+ case PERL_constant_ISSV:
+ EXTEND(SP, 1);
+ PUSHs(&PL_sv_undef);
+ PUSHs(sv);
+ break; */
+ /* Uncomment this if you need to return UNDEFs
+ case PERL_constant_ISUNDEF:
+ break; */
+ /* Uncomment this if you need to return UVs
+ case PERL_constant_ISUV:
+ EXTEND(SP, 1);
+ PUSHs(&PL_sv_undef);
+ PUSHu((UV)iv);
+ break; */
+ /* Uncomment this if you need to return YESs
+ case PERL_constant_ISYES:
+ EXTEND(SP, 1);
+ PUSHs(&PL_sv_undef);
+ PUSHs(&PL_sv_yes);
+ break; */
+ default:
+ sv = sv_2mortal(newSVpvf(
+ "Unexpected return type %d while processing ALTree::CUtils macro %s, used",
+ type, s));
+ PUSHs(sv);
+ }
diff --git a/trunk/CUtils/fallback/const-c.inc b/trunk/CUtils/fallback/const-c.inc
new file mode 100644
index 0000000000000000000000000000000000000000..88ec41711c72a7ee4766c9830bb1ba4e2fadda70
--- /dev/null
+++ b/trunk/CUtils/fallback/const-c.inc
@@ -0,0 +1,55 @@
+#define PERL_constant_NOTFOUND 1
+#define PERL_constant_NOTDEF 2
+#define PERL_constant_ISIV 3
+#define PERL_constant_ISNO 4
+#define PERL_constant_ISNV 5
+#define PERL_constant_ISPV 6
+#define PERL_constant_ISPVN 7
+#define PERL_constant_ISSV 8
+#define PERL_constant_ISUNDEF 9
+#define PERL_constant_ISUV 10
+#define PERL_constant_ISYES 11
+
+#ifndef NVTYPE
+typedef double NV; /* 5.6 and later define NVTYPE, and typedef NV to it. */
+#endif
+#ifndef aTHX_
+#define aTHX_ /* 5.6 or later define this for threading support. */
+#endif
+#ifndef pTHX_
+#define pTHX_ /* 5.6 or later define this for threading support. */
+#endif
+
+static int
+constant (pTHX_ const char *name, STRLEN len) {
+ /* Initially switch on the length of the name. */
+ /* When generated this function returned values for the list of names given
+ in this section of perl code. Rather than manually editing these functions
+ to add or remove constants, which would result in this comment and section
+ of code becoming inaccurate, we recommend that you edit this section of
+ code, and use it to regenerate a new set of constant functions which you
+ then use to replace the originals.
+
+ Regenerate these constant functions by feeding this entire source file to
+ perl -x
+
+#!/usr/bin/perl -w
+use ExtUtils::Constant qw (constant_types C_constant XS_constant);
+
+my $types = {map {($_, 1)} qw()};
+my @names = (qw());
+
+print constant_types(); # macro defs
+foreach (C_constant ("ALTree::CUtils", 'constant', 'IV', $types, undef, 3, @names) ) {
+ print $_, "\n"; # C constant subs
+}
+print "#### XS Section:\n";
+print XS_constant ("ALTree::CUtils", $types);
+__END__
+ */
+
+ switch (len) {
+ }
+ return PERL_constant_NOTFOUND;
+}
+
diff --git a/trunk/CUtils/fallback/const-xs.inc b/trunk/CUtils/fallback/const-xs.inc
new file mode 100644
index 0000000000000000000000000000000000000000..1945c56373c2c602b85a9e98aa87618cf5500b4d
--- /dev/null
+++ b/trunk/CUtils/fallback/const-xs.inc
@@ -0,0 +1,87 @@
+void
+constant(sv)
+ PREINIT:
+#ifdef dXSTARG
+ dXSTARG; /* Faster if we have it. */
+#else
+ dTARGET;
+#endif
+ STRLEN len;
+ int type;
+ /* IV iv; Uncomment this if you need to return IVs */
+ /* NV nv; Uncomment this if you need to return NVs */
+ /* const char *pv; Uncomment this if you need to return PVs */
+ INPUT:
+ SV * sv;
+ const char * s = SvPV(sv, len);
+ PPCODE:
+ type = constant(aTHX_ s, len);
+ /* Return 1 or 2 items. First is error message, or undef if no error.
+ Second, if present, is found value */
+ switch (type) {
+ case PERL_constant_NOTFOUND:
+ sv = sv_2mortal(newSVpvf("%s is not a valid ALTree::CUtils macro", s));
+ PUSHs(sv);
+ break;
+ case PERL_constant_NOTDEF:
+ sv = sv_2mortal(newSVpvf(
+ "Your vendor has not defined ALTree::CUtils macro %s, used", s));
+ PUSHs(sv);
+ break;
+ /* Uncomment this if you need to return IVs
+ case PERL_constant_ISIV:
+ EXTEND(SP, 1);
+ PUSHs(&PL_sv_undef);
+ PUSHi(iv);
+ break; */
+ /* Uncomment this if you need to return NOs
+ case PERL_constant_ISNO:
+ EXTEND(SP, 1);
+ PUSHs(&PL_sv_undef);
+ PUSHs(&PL_sv_no);
+ break; */
+ /* Uncomment this if you need to return NVs
+ case PERL_constant_ISNV:
+ EXTEND(SP, 1);
+ PUSHs(&PL_sv_undef);
+ PUSHn(nv);
+ break; */
+ /* Uncomment this if you need to return PVs
+ case PERL_constant_ISPV:
+ EXTEND(SP, 1);
+ PUSHs(&PL_sv_undef);
+ PUSHp(pv, strlen(pv));
+ break; */
+ /* Uncomment this if you need to return PVNs
+ case PERL_constant_ISPVN:
+ EXTEND(SP, 1);
+ PUSHs(&PL_sv_undef);
+ PUSHp(pv, iv);
+ break; */
+ /* Uncomment this if you need to return SVs
+ case PERL_constant_ISSV:
+ EXTEND(SP, 1);
+ PUSHs(&PL_sv_undef);
+ PUSHs(sv);
+ break; */
+ /* Uncomment this if you need to return UNDEFs
+ case PERL_constant_ISUNDEF:
+ break; */
+ /* Uncomment this if you need to return UVs
+ case PERL_constant_ISUV:
+ EXTEND(SP, 1);
+ PUSHs(&PL_sv_undef);
+ PUSHu((UV)iv);
+ break; */
+ /* Uncomment this if you need to return YESs
+ case PERL_constant_ISYES:
+ EXTEND(SP, 1);
+ PUSHs(&PL_sv_undef);
+ PUSHs(&PL_sv_yes);
+ break; */
+ default:
+ sv = sv_2mortal(newSVpvf(
+ "Unexpected return type %d while processing ALTree::CUtils macro %s, used",
+ type, s));
+ PUSHs(sv);
+ }
diff --git a/trunk/CUtils/lib/ALTree/CUtils.pm b/trunk/CUtils/lib/ALTree/CUtils.pm
new file mode 100644
index 0000000000000000000000000000000000000000..c99756a004500d4241edd921879fc960d211d835
--- /dev/null
+++ b/trunk/CUtils/lib/ALTree/CUtils.pm
@@ -0,0 +1,129 @@
+package ALTree::CUtils;
+
+use 5.008;
+use strict;
+use warnings;
+use Carp;
+
+require Exporter;
+use AutoLoader;
+
+our @ISA = qw(Exporter);
+
+# Items to export into callers namespace by default. Note: do not export
+# names by default without a very good reason. Use EXPORT_OK instead.
+# Do not simply export all your public functions/methods/constants.
+
+# This allows declaration use ALTree::CUtils ':all';
+# If you do not need this, moving things directly into @EXPORT or @EXPORT_OK
+# will save memory.
+our %EXPORT_TAGS = ( 'all' => [ qw(
+ bilateral
+ critchi
+ left
+ pochisq
+ right
+) ] );
+
+our @EXPORT_OK = ( @{ $EXPORT_TAGS{'all'} } );
+
+our @EXPORT = qw(
+
+);
+
+our $VERSION = '1.1';
+
+sub AUTOLOAD {
+ # This AUTOLOAD is used to 'autoload' constants from the constant()
+ # XS function.
+
+ my $constname;
+ our $AUTOLOAD;
+ ($constname = $AUTOLOAD) =~ s/.*:://;
+ croak "&ALTree::CUtils::constant not defined" if $constname eq 'constant';
+ my ($error, $val) = constant($constname);
+ if ($error) { croak $error; }
+ {
+ no strict 'refs';
+ # Fixed between 5.005_53 and 5.005_61
+#XXX if ($] >= 5.00561) {
+#XXX *$AUTOLOAD = sub () { $val };
+#XXX }
+#XXX else {
+ *$AUTOLOAD = sub { $val };
+#XXX }
+ }
+ goto &$AUTOLOAD;
+}
+
+require XSLoader;
+XSLoader::load('ALTree::CUtils', $VERSION);
+
+# Preloaded methods go here.
+
+# Autoload methods go after =cut, and are processed by the autosplit program.
+
+1;
+__END__
+# Below is stub documentation for your module. You'd better edit it!
+
+=head1 NAME
+
+ALTree::CUtils - Perl extension for blah blah blah
+
+=head1 SYNOPSIS
+
+ use ALTree::CUtils;
+ blah blah blah
+
+=head1 DESCRIPTION
+
+Stub documentation for ALTree::CUtils, created by h2xs. It looks like the
+author of the extension was negligent enough to leave the stub
+unedited.
+
+Blah blah blah.
+
+=head2 EXPORT
+
+None by default.
+
+=head2 Exportable functions
+
+ double bilateral(double a, double b, double c, double d)
+ double critchi(double p, int df)
+ double left(double a, double b, double c, double d)
+ double pochisq(double x, int df)
+ double right(double a, double b, double c, double d)
+ hash_ref double_permutation(int nb_sample, int nb_chi2, array_ref data)
+ data : array of nb_sample*nb_chi2 doubles
+ chi2_0_of_sample_0, chi2_1_of_sample_0, ..., chi2_0_of_sample_1, ...
+ return keys:
+ pmin => double
+ chi2 => array of doubles
+
+=head1 SEE ALSO
+
+Mention other useful documentation such as the documentation of
+related modules or operating system documentation (such as man pages
+in UNIX), or any relevant external documentation such as RFCs or
+standards.
+
+If you have a mailing list set up for your module, mention it here.
+
+If you have a web site set up for your module, mention it here.
+
+=head1 AUTHOR
+
+Claire Bardel, E<lt>bardel@vjf.inserm.frE<gt>
+
+=head1 COPYRIGHT AND LICENSE
+
+Copyright (C) 2005 by Claire Bardel
+
+This library is free software; you can redistribute it and/or modify
+it under the same terms as Perl itself, either Perl version 5.8.4 or,
+at your option, any later version of Perl 5 you may have available.
+
+
+=cut
diff --git a/trunk/CUtils/ppport.h b/trunk/CUtils/ppport.h
new file mode 100644
index 0000000000000000000000000000000000000000..4c4ec58e0bc9ea34022a21424e3e7fb48399ccc6
--- /dev/null
+++ b/trunk/CUtils/ppport.h
@@ -0,0 +1,1102 @@
+
+/* ppport.h -- Perl/Pollution/Portability Version 2.011
+ *
+ * Automatically Created by Devel::PPPort on Sun Jun 5 18:19:28 2005
+ *
+ * Do NOT edit this file directly! -- Edit PPPort.pm instead.
+ *
+ * Version 2.x, Copyright (C) 2001, Paul Marquess.
+ * Version 1.x, Copyright (C) 1999, Kenneth Albanowski.
+ * This code may be used and distributed under the same license as any
+ * version of Perl.
+ *
+ * This version of ppport.h is designed to support operation with Perl
+ * installations back to 5.004, and has been tested up to 5.8.1.
+ *
+ * If this version of ppport.h is failing during the compilation of this
+ * module, please check if a newer version of Devel::PPPort is available
+ * on CPAN before sending a bug report.
+ *
+ * If you are using the latest version of Devel::PPPort and it is failing
+ * during compilation of this module, please send a report to perlbug@perl.com
+ *
+ * Include all following information:
+ *
+ * 1. The complete output from running "perl -V"
+ *
+ * 2. This file.
+ *
+ * 3. The name & version of the module you were trying to build.
+ *
+ * 4. A full log of the build that failed.
+ *
+ * 5. Any other information that you think could be relevant.
+ *
+ *
+ * For the latest version of this code, please retreive the Devel::PPPort
+ * module from CPAN.
+ *
+ */
+
+/*
+ * In order for a Perl extension module to be as portable as possible
+ * across differing versions of Perl itself, certain steps need to be taken.
+ * Including this header is the first major one, then using dTHR is all the
+ * appropriate places and using a PL_ prefix to refer to global Perl
+ * variables is the second.
+ *
+ */
+
+
+/* If you use one of a few functions that were not present in earlier
+ * versions of Perl, please add a define before the inclusion of ppport.h
+ * for a static include, or use the GLOBAL request in a single module to
+ * produce a global definition that can be referenced from the other
+ * modules.
+ *
+ * Function: Static define: Extern define:
+ * newCONSTSUB() NEED_newCONSTSUB NEED_newCONSTSUB_GLOBAL
+ *
+ */
+
+
+/* To verify whether ppport.h is needed for your module, and whether any
+ * special defines should be used, ppport.h can be run through Perl to check
+ * your source code. Simply say:
+ *
+ * perl -x ppport.h *.c *.h *.xs foo/bar*.c [etc]
+ *
+ * The result will be a list of patches suggesting changes that should at
+ * least be acceptable, if not necessarily the most efficient solution, or a
+ * fix for all possible problems. It won't catch where dTHR is needed, and
+ * doesn't attempt to account for global macro or function definitions,
+ * nested includes, typemaps, etc.
+ *
+ * In order to test for the need of dTHR, please try your module under a
+ * recent version of Perl that has threading compiled-in.
+ *
+ */
+
+
+/*
+#!/usr/bin/perl
+@ARGV = ("*.xs") if !@ARGV;
+%badmacros = %funcs = %macros = (); $replace = 0;
+foreach (<DATA>) {
+ $funcs{$1} = 1 if /Provide:\s+(\S+)/;
+ $macros{$1} = 1 if /^#\s*define\s+([a-zA-Z0-9_]+)/;
+ $replace = $1 if /Replace:\s+(\d+)/;
+ $badmacros{$2}=$1 if $replace and /^#\s*define\s+([a-zA-Z0-9_]+).*?\s+([a-zA-Z0-9_]+)/;
+ $badmacros{$1}=$2 if /Replace (\S+) with (\S+)/;
+}
+foreach $filename (map(glob($_),@ARGV)) {
+ unless (open(IN, "<$filename")) {
+ warn "Unable to read from $file: $!\n";
+ next;
+ }
+ print "Scanning $filename...\n";
+ $c = ""; while (<IN>) { $c .= $_; } close(IN);
+ $need_include = 0; %add_func = (); $changes = 0;
+ $has_include = ($c =~ /#.*include.*ppport/m);
+
+ foreach $func (keys %funcs) {
+ if ($c =~ /#.*define.*\bNEED_$func(_GLOBAL)?\b/m) {
+ if ($c !~ /\b$func\b/m) {
+ print "If $func isn't needed, you don't need to request it.\n" if
+ $changes += ($c =~ s/^.*#.*define.*\bNEED_$func\b.*\n//m);
+ } else {
+ print "Uses $func\n";
+ $need_include = 1;
+ }
+ } else {
+ if ($c =~ /\b$func\b/m) {
+ $add_func{$func} =1 ;
+ print "Uses $func\n";
+ $need_include = 1;
+ }
+ }
+ }
+
+ if (not $need_include) {
+ foreach $macro (keys %macros) {
+ if ($c =~ /\b$macro\b/m) {
+ print "Uses $macro\n";
+ $need_include = 1;
+ }
+ }
+ }
+
+ foreach $badmacro (keys %badmacros) {
+ if ($c =~ /\b$badmacro\b/m) {
+ $changes += ($c =~ s/\b$badmacro\b/$badmacros{$badmacro}/gm);
+ print "Uses $badmacros{$badmacro} (instead of $badmacro)\n";
+ $need_include = 1;
+ }
+ }
+
+ if (scalar(keys %add_func) or $need_include != $has_include) {
+ if (!$has_include) {
+ $inc = join('',map("#define NEED_$_\n", sort keys %add_func)).
+ "#include \"ppport.h\"\n";
+ $c = "$inc$c" unless $c =~ s/#.*include.*XSUB.*\n/$&$inc/m;
+ } elsif (keys %add_func) {
+ $inc = join('',map("#define NEED_$_\n", sort keys %add_func));
+ $c = "$inc$c" unless $c =~ s/^.*#.*include.*ppport.*$/$inc$&/m;
+ }
+ if (!$need_include) {
+ print "Doesn't seem to need ppport.h.\n";
+ $c =~ s/^.*#.*include.*ppport.*\n//m;
+ }
+ $changes++;
+ }
+
+ if ($changes) {
+ require POSIX; use Fcntl;
+ for(;;) {
+ $tmp = POSIX::tmpnam();
+ sysopen(OUT, $tmp, O_CREAT|O_WRONLY|O_EXCL, 0700) && last;
+ }
+
+ print OUT $c;
+ close(OUT);
+
+ open(DIFF, "diff -u $filename $tmp|");
+ while (<DIFF>) { s!$tmp!$filename.patched!; print STDOUT; }
+ close(DIFF);
+ unlink($tmp);
+ } else {
+ print "Looks OK\n";
+ }
+}
+__DATA__
+*/
+
+#ifndef _P_P_PORTABILITY_H_
+#define _P_P_PORTABILITY_H_
+
+#ifndef PERL_REVISION
+# ifndef __PATCHLEVEL_H_INCLUDED__
+# define PERL_PATCHLEVEL_H_IMPLICIT
+# include <patchlevel.h>
+# endif
+# if !(defined(PERL_VERSION) || (defined(SUBVERSION) && defined(PATCHLEVEL)))
+# include <could_not_find_Perl_patchlevel.h>
+# endif
+# ifndef PERL_REVISION
+# define PERL_REVISION (5)
+ /* Replace: 1 */
+# define PERL_VERSION PATCHLEVEL
+# define PERL_SUBVERSION SUBVERSION
+ /* Replace PERL_PATCHLEVEL with PERL_VERSION */
+ /* Replace: 0 */
+# endif
+#endif
+
+#define PERL_BCDVERSION ((PERL_REVISION * 0x1000000L) + (PERL_VERSION * 0x1000L) + PERL_SUBVERSION)
+
+/* It is very unlikely that anyone will try to use this with Perl 6
+ (or greater), but who knows.
+ */
+#if PERL_REVISION != 5
+# error ppport.h only works with Perl version 5
+#endif /* PERL_REVISION != 5 */
+
+#ifndef ERRSV
+# define ERRSV perl_get_sv("@",FALSE)
+#endif
+
+#if (PERL_VERSION < 4) || ((PERL_VERSION == 4) && (PERL_SUBVERSION <= 5))
+/* Replace: 1 */
+# define PL_Sv Sv
+# define PL_compiling compiling
+# define PL_copline copline
+# define PL_curcop curcop
+# define PL_curstash curstash
+# define PL_defgv defgv
+# define PL_dirty dirty
+# define PL_dowarn dowarn
+# define PL_hints hints
+# define PL_na na
+# define PL_perldb perldb
+# define PL_rsfp_filters rsfp_filters
+# define PL_rsfpv rsfp
+# define PL_stdingv stdingv
+# define PL_sv_no sv_no
+# define PL_sv_undef sv_undef
+# define PL_sv_yes sv_yes
+/* Replace: 0 */
+#endif
+
+#ifdef HASATTRIBUTE
+# if (defined(__GNUC__) && defined(__cplusplus)) || defined(__INTEL_COMPILER)
+# define PERL_UNUSED_DECL
+# else
+# define PERL_UNUSED_DECL __attribute__((unused))
+# endif
+#else
+# define PERL_UNUSED_DECL
+#endif
+
+#ifndef dNOOP
+# define NOOP (void)0
+# define dNOOP extern int Perl___notused PERL_UNUSED_DECL
+#endif
+
+#ifndef dTHR
+# define dTHR dNOOP
+#endif
+
+#ifndef dTHX
+# define dTHX dNOOP
+# define dTHXa(x) dNOOP
+# define dTHXoa(x) dNOOP
+#endif
+
+#ifndef pTHX
+# define pTHX void
+# define pTHX_
+# define aTHX
+# define aTHX_
+#endif
+
+#ifndef dAX
+# define dAX I32 ax = MARK - PL_stack_base + 1
+#endif
+#ifndef dITEMS
+# define dITEMS I32 items = SP - MARK
+#endif
+
+/* IV could also be a quad (say, a long long), but Perls
+ * capable of those should have IVSIZE already. */
+#if !defined(IVSIZE) && defined(LONGSIZE)
+# define IVSIZE LONGSIZE
+#endif
+#ifndef IVSIZE
+# define IVSIZE 4 /* A bold guess, but the best we can make. */
+#endif
+
+#ifndef UVSIZE
+# define UVSIZE IVSIZE
+#endif
+
+#ifndef NVTYPE
+# if defined(USE_LONG_DOUBLE) && defined(HAS_LONG_DOUBLE)
+# define NVTYPE long double
+# else
+# define NVTYPE double
+# endif
+typedef NVTYPE NV;
+#endif
+
+#ifndef INT2PTR
+
+#if (IVSIZE == PTRSIZE) && (UVSIZE == PTRSIZE)
+# define PTRV UV
+# define INT2PTR(any,d) (any)(d)
+#else
+# if PTRSIZE == LONGSIZE
+# define PTRV unsigned long
+# else
+# define PTRV unsigned
+# endif
+# define INT2PTR(any,d) (any)(PTRV)(d)
+#endif
+#define NUM2PTR(any,d) (any)(PTRV)(d)
+#define PTR2IV(p) INT2PTR(IV,p)
+#define PTR2UV(p) INT2PTR(UV,p)
+#define PTR2NV(p) NUM2PTR(NV,p)
+#if PTRSIZE == LONGSIZE
+# define PTR2ul(p) (unsigned long)(p)
+#else
+# define PTR2ul(p) INT2PTR(unsigned long,p)
+#endif
+
+#endif /* !INT2PTR */
+
+#ifndef boolSV
+# define boolSV(b) ((b) ? &PL_sv_yes : &PL_sv_no)
+#endif
+
+#ifndef gv_stashpvn
+# define gv_stashpvn(str,len,flags) gv_stashpv(str,flags)
+#endif
+
+#ifndef newSVpvn
+# define newSVpvn(data,len) ((len) ? newSVpv ((data), (len)) : newSVpv ("", 0))
+#endif
+
+#ifndef newRV_inc
+/* Replace: 1 */
+# define newRV_inc(sv) newRV(sv)
+/* Replace: 0 */
+#endif
+
+/* DEFSV appears first in 5.004_56 */
+#ifndef DEFSV
+# define DEFSV GvSV(PL_defgv)
+#endif
+
+#ifndef SAVE_DEFSV
+# define SAVE_DEFSV SAVESPTR(GvSV(PL_defgv))
+#endif
+
+#ifndef newRV_noinc
+# ifdef __GNUC__
+# define newRV_noinc(sv) \
+ ({ \
+ SV *nsv = (SV*)newRV(sv); \
+ SvREFCNT_dec(sv); \
+ nsv; \
+ })
+# else
+# if defined(USE_THREADS)
+static SV * newRV_noinc (SV * sv)
+{
+ SV *nsv = (SV*)newRV(sv);
+ SvREFCNT_dec(sv);
+ return nsv;
+}
+# else
+# define newRV_noinc(sv) \
+ (PL_Sv=(SV*)newRV(sv), SvREFCNT_dec(sv), (SV*)PL_Sv)
+# endif
+# endif
+#endif
+
+/* Provide: newCONSTSUB */
+
+/* newCONSTSUB from IO.xs is in the core starting with 5.004_63 */
+#if (PERL_VERSION < 4) || ((PERL_VERSION == 4) && (PERL_SUBVERSION < 63))
+
+#if defined(NEED_newCONSTSUB)
+static
+#else
+extern void newCONSTSUB(HV * stash, char * name, SV *sv);
+#endif
+
+#if defined(NEED_newCONSTSUB) || defined(NEED_newCONSTSUB_GLOBAL)
+void
+newCONSTSUB(stash,name,sv)
+HV *stash;
+char *name;
+SV *sv;
+{
+ U32 oldhints = PL_hints;
+ HV *old_cop_stash = PL_curcop->cop_stash;
+ HV *old_curstash = PL_curstash;
+ line_t oldline = PL_curcop->cop_line;
+ PL_curcop->cop_line = PL_copline;
+
+ PL_hints &= ~HINT_BLOCK_SCOPE;
+ if (stash)
+ PL_curstash = PL_curcop->cop_stash = stash;
+
+ newSUB(
+
+#if (PERL_VERSION < 3) || ((PERL_VERSION == 3) && (PERL_SUBVERSION < 22))
+ /* before 5.003_22 */
+ start_subparse(),
+#else
+# if (PERL_VERSION == 3) && (PERL_SUBVERSION == 22)
+ /* 5.003_22 */
+ start_subparse(0),
+# else
+ /* 5.003_23 onwards */
+ start_subparse(FALSE, 0),
+# endif
+#endif
+
+ newSVOP(OP_CONST, 0, newSVpv(name,0)),
+ newSVOP(OP_CONST, 0, &PL_sv_no), /* SvPV(&PL_sv_no) == "" -- GMB */
+ newSTATEOP(0, Nullch, newSVOP(OP_CONST, 0, sv))
+ );
+
+ PL_hints = oldhints;
+ PL_curcop->cop_stash = old_cop_stash;
+ PL_curstash = old_curstash;
+ PL_curcop->cop_line = oldline;
+}
+#endif
+
+#endif /* newCONSTSUB */
+
+#ifndef START_MY_CXT
+
+/*
+ * Boilerplate macros for initializing and accessing interpreter-local
+ * data from C. All statics in extensions should be reworked to use
+ * this, if you want to make the extension thread-safe. See ext/re/re.xs
+ * for an example of the use of these macros.
+ *
+ * Code that uses these macros is responsible for the following:
+ * 1. #define MY_CXT_KEY to a unique string, e.g. "DynaLoader_guts"
+ * 2. Declare a typedef named my_cxt_t that is a structure that contains
+ * all the data that needs to be interpreter-local.
+ * 3. Use the START_MY_CXT macro after the declaration of my_cxt_t.
+ * 4. Use the MY_CXT_INIT macro such that it is called exactly once
+ * (typically put in the BOOT: section).
+ * 5. Use the members of the my_cxt_t structure everywhere as
+ * MY_CXT.member.
+ * 6. Use the dMY_CXT macro (a declaration) in all the functions that
+ * access MY_CXT.
+ */
+
+#if defined(MULTIPLICITY) || defined(PERL_OBJECT) || \
+ defined(PERL_CAPI) || defined(PERL_IMPLICIT_CONTEXT)
+
+/* This must appear in all extensions that define a my_cxt_t structure,
+ * right after the definition (i.e. at file scope). The non-threads
+ * case below uses it to declare the data as static. */
+#define START_MY_CXT
+
+#if (PERL_VERSION < 4 || (PERL_VERSION == 4 && PERL_SUBVERSION < 68 ))
+/* Fetches the SV that keeps the per-interpreter data. */
+#define dMY_CXT_SV \
+ SV *my_cxt_sv = perl_get_sv(MY_CXT_KEY, FALSE)
+#else /* >= perl5.004_68 */
+#define dMY_CXT_SV \
+ SV *my_cxt_sv = *hv_fetch(PL_modglobal, MY_CXT_KEY, \
+ sizeof(MY_CXT_KEY)-1, TRUE)
+#endif /* < perl5.004_68 */
+
+/* This declaration should be used within all functions that use the
+ * interpreter-local data. */
+#define dMY_CXT \
+ dMY_CXT_SV; \
+ my_cxt_t *my_cxtp = INT2PTR(my_cxt_t*,SvUV(my_cxt_sv))
+
+/* Creates and zeroes the per-interpreter data.
+ * (We allocate my_cxtp in a Perl SV so that it will be released when
+ * the interpreter goes away.) */
+#define MY_CXT_INIT \
+ dMY_CXT_SV; \
+ /* newSV() allocates one more than needed */ \
+ my_cxt_t *my_cxtp = (my_cxt_t*)SvPVX(newSV(sizeof(my_cxt_t)-1));\
+ Zero(my_cxtp, 1, my_cxt_t); \
+ sv_setuv(my_cxt_sv, PTR2UV(my_cxtp))
+
+/* This macro must be used to access members of the my_cxt_t structure.
+ * e.g. MYCXT.some_data */
+#define MY_CXT (*my_cxtp)
+
+/* Judicious use of these macros can reduce the number of times dMY_CXT
+ * is used. Use is similar to pTHX, aTHX etc. */
+#define pMY_CXT my_cxt_t *my_cxtp
+#define pMY_CXT_ pMY_CXT,
+#define _pMY_CXT ,pMY_CXT
+#define aMY_CXT my_cxtp
+#define aMY_CXT_ aMY_CXT,
+#define _aMY_CXT ,aMY_CXT
+
+#else /* single interpreter */
+
+#define START_MY_CXT static my_cxt_t my_cxt;
+#define dMY_CXT_SV dNOOP
+#define dMY_CXT dNOOP
+#define MY_CXT_INIT NOOP
+#define MY_CXT my_cxt
+
+#define pMY_CXT void
+#define pMY_CXT_
+#define _pMY_CXT
+#define aMY_CXT
+#define aMY_CXT_
+#define _aMY_CXT
+
+#endif
+
+#endif /* START_MY_CXT */
+
+#ifndef IVdf
+# if IVSIZE == LONGSIZE
+# define IVdf "ld"
+# define UVuf "lu"
+# define UVof "lo"
+# define UVxf "lx"
+# define UVXf "lX"
+# else
+# if IVSIZE == INTSIZE
+# define IVdf "d"
+# define UVuf "u"
+# define UVof "o"
+# define UVxf "x"
+# define UVXf "X"
+# endif
+# endif
+#endif
+
+#ifndef NVef
+# if defined(USE_LONG_DOUBLE) && defined(HAS_LONG_DOUBLE) && \
+ defined(PERL_PRIfldbl) /* Not very likely, but let's try anyway. */
+# define NVef PERL_PRIeldbl
+# define NVff PERL_PRIfldbl
+# define NVgf PERL_PRIgldbl
+# else
+# define NVef "e"
+# define NVff "f"
+# define NVgf "g"
+# endif
+#endif
+
+#ifndef AvFILLp /* Older perls (<=5.003) lack AvFILLp */
+# define AvFILLp AvFILL
+#endif
+
+#ifdef SvPVbyte
+# if PERL_REVISION == 5 && PERL_VERSION < 7
+ /* SvPVbyte does not work in perl-5.6.1, borrowed version for 5.7.3 */
+# undef SvPVbyte
+# define SvPVbyte(sv, lp) \
+ ((SvFLAGS(sv) & (SVf_POK|SVf_UTF8)) == (SVf_POK) \
+ ? ((lp = SvCUR(sv)), SvPVX(sv)) : my_sv_2pvbyte(aTHX_ sv, &lp))
+ static char *
+ my_sv_2pvbyte(pTHX_ register SV *sv, STRLEN *lp)
+ {
+ sv_utf8_downgrade(sv,0);
+ return SvPV(sv,*lp);
+ }
+# endif
+#else
+# define SvPVbyte SvPV
+#endif
+
+#ifndef SvPV_nolen
+# define SvPV_nolen(sv) \
+ ((SvFLAGS(sv) & (SVf_POK)) == SVf_POK \
+ ? SvPVX(sv) : sv_2pv_nolen(sv))
+ static char *
+ sv_2pv_nolen(pTHX_ register SV *sv)
+ {
+ STRLEN n_a;
+ return sv_2pv(sv, &n_a);
+ }
+#endif
+
+#ifndef get_cv
+# define get_cv(name,create) perl_get_cv(name,create)
+#endif
+
+#ifndef get_sv
+# define get_sv(name,create) perl_get_sv(name,create)
+#endif
+
+#ifndef get_av
+# define get_av(name,create) perl_get_av(name,create)
+#endif
+
+#ifndef get_hv
+# define get_hv(name,create) perl_get_hv(name,create)
+#endif
+
+#ifndef call_argv
+# define call_argv perl_call_argv
+#endif
+
+#ifndef call_method
+# define call_method perl_call_method
+#endif
+
+#ifndef call_pv
+# define call_pv perl_call_pv
+#endif
+
+#ifndef call_sv
+# define call_sv perl_call_sv
+#endif
+
+#ifndef eval_pv
+# define eval_pv perl_eval_pv
+#endif
+
+#ifndef eval_sv
+# define eval_sv perl_eval_sv
+#endif
+
+#ifndef PERL_SCAN_GREATER_THAN_UV_MAX
+# define PERL_SCAN_GREATER_THAN_UV_MAX 0x02
+#endif
+
+#ifndef PERL_SCAN_SILENT_ILLDIGIT
+# define PERL_SCAN_SILENT_ILLDIGIT 0x04
+#endif
+
+#ifndef PERL_SCAN_ALLOW_UNDERSCORES
+# define PERL_SCAN_ALLOW_UNDERSCORES 0x01
+#endif
+
+#ifndef PERL_SCAN_DISALLOW_PREFIX
+# define PERL_SCAN_DISALLOW_PREFIX 0x02
+#endif
+
+#if (PERL_VERSION > 6) || ((PERL_VERSION == 6) && (PERL_SUBVERSION >= 1))
+#define I32_CAST
+#else
+#define I32_CAST (I32*)
+#endif
+
+#ifndef grok_hex
+static UV _grok_hex (char *string, STRLEN *len, I32 *flags, NV *result) {
+ NV r = scan_hex(string, *len, I32_CAST len);
+ if (r > UV_MAX) {
+ *flags |= PERL_SCAN_GREATER_THAN_UV_MAX;
+ if (result) *result = r;
+ return UV_MAX;
+ }
+ return (UV)r;
+}
+
+# define grok_hex(string, len, flags, result) \
+ _grok_hex((string), (len), (flags), (result))
+#endif
+
+#ifndef grok_oct
+static UV _grok_oct (char *string, STRLEN *len, I32 *flags, NV *result) {
+ NV r = scan_oct(string, *len, I32_CAST len);
+ if (r > UV_MAX) {
+ *flags |= PERL_SCAN_GREATER_THAN_UV_MAX;
+ if (result) *result = r;
+ return UV_MAX;
+ }
+ return (UV)r;
+}
+
+# define grok_oct(string, len, flags, result) \
+ _grok_oct((string), (len), (flags), (result))
+#endif
+
+#if !defined(grok_bin) && defined(scan_bin)
+static UV _grok_bin (char *string, STRLEN *len, I32 *flags, NV *result) {
+ NV r = scan_bin(string, *len, I32_CAST len);
+ if (r > UV_MAX) {
+ *flags |= PERL_SCAN_GREATER_THAN_UV_MAX;
+ if (result) *result = r;
+ return UV_MAX;
+ }
+ return (UV)r;
+}
+
+# define grok_bin(string, len, flags, result) \
+ _grok_bin((string), (len), (flags), (result))
+#endif
+
+#ifndef IN_LOCALE
+# define IN_LOCALE \
+ (PL_curcop == &PL_compiling ? IN_LOCALE_COMPILETIME : IN_LOCALE_RUNTIME)
+#endif
+
+#ifndef IN_LOCALE_RUNTIME
+# define IN_LOCALE_RUNTIME (PL_curcop->op_private & HINT_LOCALE)
+#endif
+
+#ifndef IN_LOCALE_COMPILETIME
+# define IN_LOCALE_COMPILETIME (PL_hints & HINT_LOCALE)
+#endif
+
+
+#ifndef IS_NUMBER_IN_UV
+# define IS_NUMBER_IN_UV 0x01
+# define IS_NUMBER_GREATER_THAN_UV_MAX 0x02
+# define IS_NUMBER_NOT_INT 0x04
+# define IS_NUMBER_NEG 0x08
+# define IS_NUMBER_INFINITY 0x10
+# define IS_NUMBER_NAN 0x20
+#endif
+
+#ifndef grok_numeric_radix
+# define GROK_NUMERIC_RADIX(sp, send) grok_numeric_radix(aTHX_ sp, send)
+
+#define grok_numeric_radix Perl_grok_numeric_radix
+
+bool
+Perl_grok_numeric_radix(pTHX_ const char **sp, const char *send)
+{
+#ifdef USE_LOCALE_NUMERIC
+#if (PERL_VERSION > 6) || ((PERL_VERSION == 6) && (PERL_SUBVERSION >= 1))
+ if (PL_numeric_radix_sv && IN_LOCALE) {
+ STRLEN len;
+ char* radix = SvPV(PL_numeric_radix_sv, len);
+ if (*sp + len <= send && memEQ(*sp, radix, len)) {
+ *sp += len;
+ return TRUE;
+ }
+ }
+#else
+ /* pre5.6.0 perls don't have PL_numeric_radix_sv so the radix
+ * must manually be requested from locale.h */
+#include <locale.h>
+ struct lconv *lc = localeconv();
+ char *radix = lc->decimal_point;
+ if (radix && IN_LOCALE) {
+ STRLEN len = strlen(radix);
+ if (*sp + len <= send && memEQ(*sp, radix, len)) {
+ *sp += len;
+ return TRUE;
+ }
+ }
+#endif /* PERL_VERSION */
+#endif /* USE_LOCALE_NUMERIC */
+ /* always try "." if numeric radix didn't match because
+ * we may have data from different locales mixed */
+ if (*sp < send && **sp == '.') {
+ ++*sp;
+ return TRUE;
+ }
+ return FALSE;
+}
+#endif /* grok_numeric_radix */
+
+#ifndef grok_number
+
+#define grok_number Perl_grok_number
+
+int
+Perl_grok_number(pTHX_ const char *pv, STRLEN len, UV *valuep)
+{
+ const char *s = pv;
+ const char *send = pv + len;
+ const UV max_div_10 = UV_MAX / 10;
+ const char max_mod_10 = UV_MAX % 10;
+ int numtype = 0;
+ int sawinf = 0;
+ int sawnan = 0;
+
+ while (s < send && isSPACE(*s))
+ s++;
+ if (s == send) {
+ return 0;
+ } else if (*s == '-') {
+ s++;
+ numtype = IS_NUMBER_NEG;
+ }
+ else if (*s == '+')
+ s++;
+
+ if (s == send)
+ return 0;
+
+ /* next must be digit or the radix separator or beginning of infinity */
+ if (isDIGIT(*s)) {
+ /* UVs are at least 32 bits, so the first 9 decimal digits cannot
+ overflow. */
+ UV value = *s - '0';
+ /* This construction seems to be more optimiser friendly.
+ (without it gcc does the isDIGIT test and the *s - '0' separately)
+ With it gcc on arm is managing 6 instructions (6 cycles) per digit.
+ In theory the optimiser could deduce how far to unroll the loop
+ before checking for overflow. */
+ if (++s < send) {
+ int digit = *s - '0';
+ if (digit >= 0 && digit <= 9) {
+ value = value * 10 + digit;
+ if (++s < send) {
+ digit = *s - '0';
+ if (digit >= 0 && digit <= 9) {
+ value = value * 10 + digit;
+ if (++s < send) {
+ digit = *s - '0';
+ if (digit >= 0 && digit <= 9) {
+ value = value * 10 + digit;
+ if (++s < send) {
+ digit = *s - '0';
+ if (digit >= 0 && digit <= 9) {
+ value = value * 10 + digit;
+ if (++s < send) {
+ digit = *s - '0';
+ if (digit >= 0 && digit <= 9) {
+ value = value * 10 + digit;
+ if (++s < send) {
+ digit = *s - '0';
+ if (digit >= 0 && digit <= 9) {
+ value = value * 10 + digit;
+ if (++s < send) {
+ digit = *s - '0';
+ if (digit >= 0 && digit <= 9) {
+ value = value * 10 + digit;
+ if (++s < send) {
+ digit = *s - '0';
+ if (digit >= 0 && digit <= 9) {
+ value = value * 10 + digit;
+ if (++s < send) {
+ /* Now got 9 digits, so need to check
+ each time for overflow. */
+ digit = *s - '0';
+ while (digit >= 0 && digit <= 9
+ && (value < max_div_10
+ || (value == max_div_10
+ && digit <= max_mod_10))) {
+ value = value * 10 + digit;
+ if (++s < send)
+ digit = *s - '0';
+ else
+ break;
+ }
+ if (digit >= 0 && digit <= 9
+ && (s < send)) {
+ /* value overflowed.
+ skip the remaining digits, don't
+ worry about setting *valuep. */
+ do {
+ s++;
+ } while (s < send && isDIGIT(*s));
+ numtype |=
+ IS_NUMBER_GREATER_THAN_UV_MAX;
+ goto skip_value;
+ }
+ }
+ }
+ }
+ }
+ }
+ }
+ }
+ }
+ }
+ }
+ }
+ }
+ }
+ }
+ }
+ }
+ }
+ numtype |= IS_NUMBER_IN_UV;
+ if (valuep)
+ *valuep = value;
+
+ skip_value:
+ if (GROK_NUMERIC_RADIX(&s, send)) {
+ numtype |= IS_NUMBER_NOT_INT;
+ while (s < send && isDIGIT(*s)) /* optional digits after the radix */
+ s++;
+ }
+ }
+ else if (GROK_NUMERIC_RADIX(&s, send)) {
+ numtype |= IS_NUMBER_NOT_INT | IS_NUMBER_IN_UV; /* valuep assigned below */
+ /* no digits before the radix means we need digits after it */
+ if (s < send && isDIGIT(*s)) {
+ do {
+ s++;
+ } while (s < send && isDIGIT(*s));
+ if (valuep) {
+ /* integer approximation is valid - it's 0. */
+ *valuep = 0;
+ }
+ }
+ else
+ return 0;
+ } else if (*s == 'I' || *s == 'i') {
+ s++; if (s == send || (*s != 'N' && *s != 'n')) return 0;
+ s++; if (s == send || (*s != 'F' && *s != 'f')) return 0;
+ s++; if (s < send && (*s == 'I' || *s == 'i')) {
+ s++; if (s == send || (*s != 'N' && *s != 'n')) return 0;
+ s++; if (s == send || (*s != 'I' && *s != 'i')) return 0;
+ s++; if (s == send || (*s != 'T' && *s != 't')) return 0;
+ s++; if (s == send || (*s != 'Y' && *s != 'y')) return 0;
+ s++;
+ }
+ sawinf = 1;
+ } else if (*s == 'N' || *s == 'n') {
+ /* XXX TODO: There are signaling NaNs and quiet NaNs. */
+ s++; if (s == send || (*s != 'A' && *s != 'a')) return 0;
+ s++; if (s == send || (*s != 'N' && *s != 'n')) return 0;
+ s++;
+ sawnan = 1;
+ } else
+ return 0;
+
+ if (sawinf) {
+ numtype &= IS_NUMBER_NEG; /* Keep track of sign */
+ numtype |= IS_NUMBER_INFINITY | IS_NUMBER_NOT_INT;
+ } else if (sawnan) {
+ numtype &= IS_NUMBER_NEG; /* Keep track of sign */
+ numtype |= IS_NUMBER_NAN | IS_NUMBER_NOT_INT;
+ } else if (s < send) {
+ /* we can have an optional exponent part */
+ if (*s == 'e' || *s == 'E') {
+ /* The only flag we keep is sign. Blow away any "it's UV" */
+ numtype &= IS_NUMBER_NEG;
+ numtype |= IS_NUMBER_NOT_INT;
+ s++;
+ if (s < send && (*s == '-' || *s == '+'))
+ s++;
+ if (s < send && isDIGIT(*s)) {
+ do {
+ s++;
+ } while (s < send && isDIGIT(*s));
+ }
+ else
+ return 0;
+ }
+ }
+ while (s < send && isSPACE(*s))
+ s++;
+ if (s >= send)
+ return numtype;
+ if (len == 10 && memEQ(pv, "0 but true", 10)) {
+ if (valuep)
+ *valuep = 0;
+ return IS_NUMBER_IN_UV;
+ }
+ return 0;
+}
+#endif /* grok_number */
+
+#ifndef PERL_MAGIC_sv
+# define PERL_MAGIC_sv '\0'
+#endif
+
+#ifndef PERL_MAGIC_overload
+# define PERL_MAGIC_overload 'A'
+#endif
+
+#ifndef PERL_MAGIC_overload_elem
+# define PERL_MAGIC_overload_elem 'a'
+#endif
+
+#ifndef PERL_MAGIC_overload_table
+# define PERL_MAGIC_overload_table 'c'
+#endif
+
+#ifndef PERL_MAGIC_bm
+# define PERL_MAGIC_bm 'B'
+#endif
+
+#ifndef PERL_MAGIC_regdata
+# define PERL_MAGIC_regdata 'D'
+#endif
+
+#ifndef PERL_MAGIC_regdatum
+# define PERL_MAGIC_regdatum 'd'
+#endif
+
+#ifndef PERL_MAGIC_env
+# define PERL_MAGIC_env 'E'
+#endif
+
+#ifndef PERL_MAGIC_envelem
+# define PERL_MAGIC_envelem 'e'
+#endif
+
+#ifndef PERL_MAGIC_fm
+# define PERL_MAGIC_fm 'f'
+#endif
+
+#ifndef PERL_MAGIC_regex_global
+# define PERL_MAGIC_regex_global 'g'
+#endif
+
+#ifndef PERL_MAGIC_isa
+# define PERL_MAGIC_isa 'I'
+#endif
+
+#ifndef PERL_MAGIC_isaelem
+# define PERL_MAGIC_isaelem 'i'
+#endif
+
+#ifndef PERL_MAGIC_nkeys
+# define PERL_MAGIC_nkeys 'k'
+#endif
+
+#ifndef PERL_MAGIC_dbfile
+# define PERL_MAGIC_dbfile 'L'
+#endif
+
+#ifndef PERL_MAGIC_dbline
+# define PERL_MAGIC_dbline 'l'
+#endif
+
+#ifndef PERL_MAGIC_mutex
+# define PERL_MAGIC_mutex 'm'
+#endif
+
+#ifndef PERL_MAGIC_shared
+# define PERL_MAGIC_shared 'N'
+#endif
+
+#ifndef PERL_MAGIC_shared_scalar
+# define PERL_MAGIC_shared_scalar 'n'
+#endif
+
+#ifndef PERL_MAGIC_collxfrm
+# define PERL_MAGIC_collxfrm 'o'
+#endif
+
+#ifndef PERL_MAGIC_tied
+# define PERL_MAGIC_tied 'P'
+#endif
+
+#ifndef PERL_MAGIC_tiedelem
+# define PERL_MAGIC_tiedelem 'p'
+#endif
+
+#ifndef PERL_MAGIC_tiedscalar
+# define PERL_MAGIC_tiedscalar 'q'
+#endif
+
+#ifndef PERL_MAGIC_qr
+# define PERL_MAGIC_qr 'r'
+#endif
+
+#ifndef PERL_MAGIC_sig
+# define PERL_MAGIC_sig 'S'
+#endif
+
+#ifndef PERL_MAGIC_sigelem
+# define PERL_MAGIC_sigelem 's'
+#endif
+
+#ifndef PERL_MAGIC_taint
+# define PERL_MAGIC_taint 't'
+#endif
+
+#ifndef PERL_MAGIC_uvar
+# define PERL_MAGIC_uvar 'U'
+#endif
+
+#ifndef PERL_MAGIC_uvar_elem
+# define PERL_MAGIC_uvar_elem 'u'
+#endif
+
+#ifndef PERL_MAGIC_vstring
+# define PERL_MAGIC_vstring 'V'
+#endif
+
+#ifndef PERL_MAGIC_vec
+# define PERL_MAGIC_vec 'v'
+#endif
+
+#ifndef PERL_MAGIC_utf8
+# define PERL_MAGIC_utf8 'w'
+#endif
+
+#ifndef PERL_MAGIC_substr
+# define PERL_MAGIC_substr 'x'
+#endif
+
+#ifndef PERL_MAGIC_defelem
+# define PERL_MAGIC_defelem 'y'
+#endif
+
+#ifndef PERL_MAGIC_glob
+# define PERL_MAGIC_glob '*'
+#endif
+
+#ifndef PERL_MAGIC_arylen
+# define PERL_MAGIC_arylen '#'
+#endif
+
+#ifndef PERL_MAGIC_pos
+# define PERL_MAGIC_pos '.'
+#endif
+
+#ifndef PERL_MAGIC_backref
+# define PERL_MAGIC_backref '<'
+#endif
+
+#ifndef PERL_MAGIC_ext
+# define PERL_MAGIC_ext '~'
+#endif
+
+#endif /* _P_P_PORTABILITY_H_ */
+
+/* End of File ppport.h */
diff --git a/trunk/CUtils/t/ALTree-CUtils.t b/trunk/CUtils/t/ALTree-CUtils.t
new file mode 100644
index 0000000000000000000000000000000000000000..b6d73c1a880ede88faf8bf9f7cc631b4196346a8
--- /dev/null
+++ b/trunk/CUtils/t/ALTree-CUtils.t
@@ -0,0 +1,15 @@
+# Before `make install' is performed this script should be runnable with
+# `make test'. After `make install' it should work as `perl ALTree-CUtils.t'
+
+#########################
+
+# change 'tests => 1' to 'tests => last_test_to_print';
+
+use Test::More tests => 1;
+BEGIN { use_ok('ALTree::CUtils') };
+
+#########################
+
+# Insert your test code below, the Test::More module is use()ed here so read
+# its man page ( perldoc Test::More ) for help writing this test script.
+
diff --git a/trunk/CUtils/t/double_permutation.t b/trunk/CUtils/t/double_permutation.t
new file mode 100644
index 0000000000000000000000000000000000000000..7d0f4be137f4ba890d07c67fcdc3ddae3c74ebce
--- /dev/null
+++ b/trunk/CUtils/t/double_permutation.t
@@ -0,0 +1,26 @@
+# Before `make install' is performed this script should be runnable with
+# `make test'. After `make install' it should work as `perl CUtils.t'
+
+#########################
+
+# change 'tests => 1' to 'tests => last_test_to_print';
+
+use Test::More tests => 3;
+BEGIN { use_ok('ALTree::CUtils') };
+
+#########################
+
+# Insert your test code below, the Test::More module is use()ed here so read
+# its man page ( perldoc Test::More ) for help writing this test script.
+
+$res=ALTree::CUtils::double_permutation(2,3, [0, 0.1]);
+is($res, undef, "undef when bad args");
+
+$res=ALTree::CUtils::double_permutation(10, 2,
+[12.1, 432.2, 123.3, 15.4, 3453.5, 34253.6, 12.7, 23.8, 23.9, 10,
+11, 12, 13, 14, 15, 16, 17, 18, 19, 20]
+);
+
+is_deeply($res, { "pmin" => 0.2,
+ "chi2" => [ 0.8, 0.1] }, "double_permutation");
+
diff --git a/trunk/Changes b/trunk/Changes
new file mode 100644
index 0000000000000000000000000000000000000000..9047d2592691e12aa3c7b6db34de69d8168ff3ee
--- /dev/null
+++ b/trunk/Changes
@@ -0,0 +1,9 @@
+Revision history for Perl extension Alphy::Utils.
+
+0.9.2 Tue Aug 2 19:19:05 2005
+ - New name : ALTree instead of ALPhy
+
+0.01 Sun Jun 5 19:04:07 2005
+ - original version; created by h2xs 1.23 with options
+ -AX -n Alphy::Utils
+
diff --git a/trunk/Documentation/Makefile b/trunk/Documentation/Makefile
new file mode 100644
index 0000000000000000000000000000000000000000..29728637e11ad1dd7411f822523c30a40cf4c02f
--- /dev/null
+++ b/trunk/Documentation/Makefile
@@ -0,0 +1,2 @@
+include LaTeX.mk
+
diff --git a/trunk/Documentation/fig/anc_outg.fig b/trunk/Documentation/fig/anc_outg.fig
new file mode 100644
index 0000000000000000000000000000000000000000..934265c65d60e224b997838d7d4c8746916741b5
--- /dev/null
+++ b/trunk/Documentation/fig/anc_outg.fig
@@ -0,0 +1,36 @@
+#FIG 3.2 Produced by xfig version 3.2.5-alpha5
+Landscape
+Center
+Metric
+A4
+100.00
+Single
+-2
+1200 2
+1 1 0 2 4 7 50 -1 -1 0.000 1 0.0000 5844 5330 695 265 5844 5330 6539 5595
+1 1 0 2 1 7 50 -1 -1 0.000 1 0.0000 2545 4550 695 265 2545 4550 3240 4550
+2 1 0 1 1 7 50 -1 -1 0.000 0 0 -1 0 0 2
+ 2925 4725 3375 4725
+2 1 0 1 4 7 50 -1 -1 0.000 0 0 -1 0 0 3
+ 3375 4725 3375 5310 5175 5310
+2 1 0 1 0 7 50 -1 -1 0.000 0 0 -1 0 0 3
+ 3375 4725 3375 4500 3825 4500
+2 1 0 1 0 7 50 -1 -1 0.000 0 0 -1 0 0 3
+ 3825 4275 3825 4950 4500 4950
+2 1 0 1 0 7 50 -1 -1 0.000 0 0 -1 0 0 7
+ 3825 4275 4275 4275 4275 4500 4725 4500 4725 4410 5175 4410
+ 5175 4410
+2 1 0 1 0 7 50 -1 -1 0.000 0 0 -1 0 0 3
+ 4725 4500 4725 4635 5175 4635
+2 1 0 1 0 7 50 -1 -1 0.000 0 0 -1 0 0 3
+ 4275 4275 4275 4050 4725 4050
+2 1 0 1 0 7 50 -1 -1 0.000 0 0 -1 0 0 2
+ 4500 4950 5175 4950
+2 1 0 1 0 7 50 -1 -1 0.000 0 0 -1 0 0 3
+ 4725 3960 4725 4185 5175 4185
+2 1 0 1 0 7 50 -1 -1 0.000 0 0 -1 0 0 2
+ 4725 3960 5175 3960
+2 2 0 0 7 7 50 -1 -1 0.000 0 0 -1 0 0 5
+ 1800 3870 6660 3870 6660 5895 1800 5895 1800 3870
+4 0 0 50 -1 0 17 0.0000 2 270 1125 5310 5400 Outgroup\001
+4 0 0 50 -1 0 17 0.0000 2 195 1020 2070 4635 Ancestor\001
diff --git a/trunk/Documentation/fig/association_paml.fig b/trunk/Documentation/fig/association_paml.fig
new file mode 100644
index 0000000000000000000000000000000000000000..a84c781b1ce7d48723007db251e0750b5c6277fe
--- /dev/null
+++ b/trunk/Documentation/fig/association_paml.fig
@@ -0,0 +1,46 @@
+#FIG 3.2 Produced by xfig version 3.2.5-alpha5
+Landscape
+Center
+Metric
+A4
+100.00
+Single
+-2
+1200 2
+1 1 0 1 0 7 50 -1 -1 0.000 1 0.0000 5590 2477 865 358 5590 2477 4725 2835
+2 1 0 2 0 7 50 -1 -1 0.000 0 0 -1 1 0 2
+ 1 1 2.00 105.00 150.00
+ 2025 2475 3060 2475
+2 1 0 2 0 7 50 -1 -1 0.000 0 0 -1 1 0 2
+ 1 1 2.00 105.00 150.00
+ 2025 2475 2025 3150
+2 1 0 2 0 7 50 -1 -1 0.000 0 0 -1 1 0 2
+ 1 1 2.00 105.00 150.00
+ 6525 2475 6975 2475
+2 1 0 2 0 7 50 -1 -1 0.000 0 0 -1 1 0 2
+ 1 1 2.00 105.00 150.00
+ 3600 2475 4635 2475
+2 4 0 1 0 7 50 -1 -1 0.000 0 0 7 0 0 5
+ 1935 2655 1935 2250 1215 2250 1215 2655 1935 2655
+2 1 0 2 0 7 50 -1 -1 0.000 0 0 -1 1 0 2
+ 1 1 2.00 105.00 150.00
+ 3825 3150 4635 2565
+2 1 0 2 0 7 50 -1 -1 0.000 0 0 -1 1 0 2
+ 1 1 2.00 105.00 150.00
+ 316 1821 1126 2406
+2 1 0 2 0 7 50 -1 -1 0.000 0 0 -1 1 0 2
+ 1 1 2.00 105.00 150.00
+ 327 3121 1137 2536
+2 1 0 2 0 7 50 -1 -1 0.000 0 0 -1 1 0 2
+ 1 1 2.00 105.00 150.00
+ 270 2475 1125 2475
+4 1 0 50 -1 0 15 0.0000 2 225 570 1575 2520 \\paml\001
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diff --git a/trunk/Documentation/fig/association_paup.fig b/trunk/Documentation/fig/association_paup.fig
new file mode 100644
index 0000000000000000000000000000000000000000..1190f8c4c2cef44a5880029e12442f41c1d2c855
--- /dev/null
+++ b/trunk/Documentation/fig/association_paup.fig
@@ -0,0 +1,39 @@
+#FIG 3.2 Produced by xfig version 3.2.5-alpha5
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diff --git a/trunk/Documentation/fig/association_phylip.fig b/trunk/Documentation/fig/association_phylip.fig
new file mode 100644
index 0000000000000000000000000000000000000000..c318b1025a1708eb94ef158b1edd29db2b77c58b
--- /dev/null
+++ b/trunk/Documentation/fig/association_phylip.fig
@@ -0,0 +1,43 @@
+#FIG 3.2 Produced by xfig version 3.2.5-alpha5
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diff --git a/trunk/Documentation/fig/create_file_paup.fig b/trunk/Documentation/fig/create_file_paup.fig
new file mode 100644
index 0000000000000000000000000000000000000000..4b6c654e326aa6bd3d6238b0fa23114a2240eee4
--- /dev/null
+++ b/trunk/Documentation/fig/create_file_paup.fig
@@ -0,0 +1,39 @@
+#FIG 3.2 Produced by xfig version 3.2.5-alpha5
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diff --git a/trunk/Documentation/fig/create_file_phy.fig b/trunk/Documentation/fig/create_file_phy.fig
new file mode 100644
index 0000000000000000000000000000000000000000..888c4b71c6e5a6441962bf078f771d51e7e5697c
--- /dev/null
+++ b/trunk/Documentation/fig/create_file_phy.fig
@@ -0,0 +1,46 @@
+#FIG 3.2 Produced by xfig version 3.2.5-alpha5
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diff --git a/trunk/Documentation/fig/localisation_paml.fig b/trunk/Documentation/fig/localisation_paml.fig
new file mode 100644
index 0000000000000000000000000000000000000000..4b6e542fe507646607cb161ea0ad19aefe0167e8
--- /dev/null
+++ b/trunk/Documentation/fig/localisation_paml.fig
@@ -0,0 +1,65 @@
+#FIG 3.2 Produced by xfig version 3.2.5-alpha5
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diff --git a/trunk/Documentation/fig/localisation_paup.fig b/trunk/Documentation/fig/localisation_paup.fig
new file mode 100644
index 0000000000000000000000000000000000000000..664f70ca9cd70c23c63b99376a5cca6d727feb98
--- /dev/null
+++ b/trunk/Documentation/fig/localisation_paup.fig
@@ -0,0 +1,50 @@
+#FIG 3.2 Produced by xfig version 3.2.5-alpha5
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diff --git a/trunk/Documentation/fig/option_b.fig b/trunk/Documentation/fig/option_b.fig
new file mode 100644
index 0000000000000000000000000000000000000000..286e1b56499b86b4bf716505c2089c3846311cf8
--- /dev/null
+++ b/trunk/Documentation/fig/option_b.fig
@@ -0,0 +1,51 @@
+#FIG 3.2 Produced by xfig version 3.2.5-alpha5
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diff --git a/trunk/Documentation/fig/option_b.subfig b/trunk/Documentation/fig/option_b.subfig
new file mode 100644
index 0000000000000000000000000000000000000000..3fab7e5479a93d537305dd3205008956605e2180
--- /dev/null
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+50
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diff --git a/trunk/Documentation/fig/overview.fig b/trunk/Documentation/fig/overview.fig
new file mode 100644
index 0000000000000000000000000000000000000000..f67c0b5f9278cfb85db5e681869395f9368628b5
--- /dev/null
+++ b/trunk/Documentation/fig/overview.fig
@@ -0,0 +1,66 @@
+#FIG 3.2 Produced by xfig version 3.2.5-alpha5
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+#
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+-6
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+4 1 0 50 -1 0 18 0.0000 2 195 675 8910 4590 \\etHT\001
+4 0 1 50 -1 0 18 0.0000 2 195 1305 7785 3375 localisation\001
+4 0 4 50 -1 0 18 0.0000 2 195 1260 6210 3375 association\001
+4 1 0 50 -1 0 18 0.0000 2 195 1335 9045 7965 \\newchitree\001
+4 1 0 50 -1 0 18 0.0000 2 255 960 9090 8280 option -l\001
+4 1 0 50 -1 0 18 0.0000 2 255 1170 9135 6030 phylogeny\001
+#
+4 1 0 50 -1 0 18 0.0000 2 255 1620 9180 6660 (\\paup, \\paml)\001
+4 1 0 50 -1 0 18 0.0000 2 195 1650 9180 6345 reconstruction\001
diff --git a/trunk/Documentation/manual.tex b/trunk/Documentation/manual.tex
new file mode 100644
index 0000000000000000000000000000000000000000..a9931e5ba15fe4d879552cebd9f5992fcd6200f1
--- /dev/null
+++ b/trunk/Documentation/manual.tex
@@ -0,0 +1,1507 @@
+\documentclass[dvips, a4paper, 11pt,nocolor]{report}
+
+%%%%%%%%%%%%%%%%%%%%%%%% PACKAGES %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
+
+\usepackage{a4wide}
+\usepackage[nocolor]{pdfswitch}
+\usepackage{texgraphicx}% Pour inclure les pstex_t
+\graphicspath{{fig/}{eps/}}
+\usepackage[latin1]{inputenc}% pour pouvoir taper des accents directement
+\usepackage[T1]{fontenc}% jolie fontes
+\usepackage{color}% Pour la couleur (mais pourquoi je l'ai mis ! :
+ % pour xfig)
+%\usepackage{colortbl}% Pour faire des tableaux avec des cases colorees
+\usepackage{subfigure}% Pour faire des figures en plusieurs parties
+\usepackage{boxedminipage}% Pour faire des boxedminipage
+\usepackage{xspace}% Pour les espaces à la fin des macros
+\usepackage{amssymb} %
+\usepackage{times} % Pareil
+\usepackage{float} % Pour le positionnement H de figure
+\usepackage{vmargin} %
+\usepackage{url} %
+\usepackage{amsmath}
+\usepackage{threeparttable} % pour les notes dans les tables
+\usepackage[square]{natbib}
+\usepackage{lscape}
+\usepackage{placeins}
+\usepackage{fancyhdr}
+\usepackage{url}
+\usepackage{setspace}
+\usepackage{alltt}
+\usepackage{tabularx}
+
+\sloppy
+%\doublespacing
+
+%%%%%%%%%%%%%%%%% COMMANDES %%%%%%%%%%%%%%%%%%%%%%%%%%%%%
+\newcommand{\mysinglespace}{\def\baselinestretch{1.1}}
+\newcommand{\mydoublespace}{\def\baselinestretch{1.6}}
+\newcommand{\treevolve}{\texttt{TREEVOLVE}\xspace}
+\newcommand{\phase}{\texttt{phase}\xspace}
+\newcommand{\famhap}{\texttt{FamHap}\xspace}
+\newcommand{\paup}{\texttt{paup}\xspace}
+\newcommand{\phylip}{\texttt{phylip}\xspace}
+\newcommand{\paml}{\texttt{paml}\xspace}
+%TODO est-ce que phyml s'écrit comme ça ?
+\newcommand{\phyml}{\texttt{phyml}\xspace}
+\newcommand{\altree}{\texttt{ALTree}\xspace}
+\renewcommand{\thetable} {\rm\Roman{table}}
+\renewcommand{\thefigure} {\rm\Roman{figure}}
+\newcommand{\newchitree}{\texttt{ALTree}\xspace}
+\newcommand{\etHTname}{altree-add-S}
+\newcommand{\etHT}{\texttt{ALTree-add-S}\xspace}
+\newcommand{\rechaploname}{altree-convert}
+\newcommand{\rechaplo}{\texttt{ALTree-convert}\xspace}
+\newcommand{\acctran}{\texttt{acctran}\xspace}
+\newcommand{\deltran}{\texttt{deltran}\xspace}
+\newcommand{\chisquare}{chi-square\xspace}
+\newcommand{\chisquares}{chi-squares\xspace}
+\newcommand{\cmd}[1]{\textit{#1}}
+\newcommand{\fn}[1]{\textbf{#1}}
+\newcommand{\prog}[1]{\texttt{#1}}
+\newcommand{\code}[1]{\texttt{#1}}
+\newcommand{\ucode}[1]{\code{\textit{#1}}}
+\newcommand{\ccode}[1]{\code{\textbf{#1}}}
+
+\newcommand{\commande}[1]{\texttt{#1}}
+
+\newenvironment{source}{%
+\begin{alltt}%
+}{%
+\end{alltt}%
+}
+
+\newenvironment{options}[1][l]{%
+ \noindent%
+ \bgroup%
+ \newcommand{\option}[2]{%
+ \code{##1}& ##2 \\%
+ }
+ \tabularx{\linewidth}{@{}#1X@{}}
+}{%
+ \endtabularx
+ \egroup%
+}
+
+%%%%%%%%%%%%%%%%%
+\begin{document}
+\pagestyle{empty}
+\pagestyle{myheadings}
+\title{ALTree: Association and Localisation tests using haplotype
+ phylogenetic Trees }
+\author{Claire Bardel, Vincent Danjean, Pierre Darlu and Emmanuelle Génin}
+
+\maketitle
+
+\tableofcontents
+
+\chapter{Overview of the software}
+
+ This software is designed to perform phylogeny-based analysis: first,
+it allows the detection of an association between a candidate gene and
+a disease, and second, it enables to make hypothesis about the
+susceptibility loci.
+
+%\section{Copyright}
+
+
+It contains three programs: \newchitree, \rechaplo and
+\etHT. The connections between these programs are described in Figure~\ref{fig:altree}
+%\section{Short description of the programs available in \altree}
+\begin{figure}[htbp]
+ \includegraphics[width=\linewidth]{overview.fig}\centering
+ \caption{\altree programs}
+ \label{fig:altree}
+\end{figure}
+
+This program is copyright (c) by Claire Bardel and Vincent Danjean
+and is distributed under the GNU General Public License. You are
+free to re-distribute it under the same license.
+
+This software comes with no warranty whatsoever. If you encounter any
+problem, please, send a bug report to Claire Bardel at the foolowing
+e-mail: bardel@vjf.inserm.fr
+ %The complete text of the GNU General Public
+ %License can be found in the annexe~\ref{GPL} on page~\pageref{GPL}.
+
+
+\section{\newchitree}
+\subsection{Association test}
+The test consists in performing series of nested homogeneity tests
+(\chisquare) comparing the number of cases and controls in the
+different clades defined on the tree. A global p-value is calculated
+for the tree by using a permutation procedure such as the one
+described by \citet{Ge03} and \citet{Becker04}.
+
+\subsection{Localisation of the susceptibility loci}
+To perform the localisation analysis, for each haplotype $h$, the user
+must previously define a new character (called character $S$) whose
+state depends on the proportion of cases carrying haplotype $h$ and
+optimise it on the haplotype phylogeny. The program \newchitree then
+looks for sites that co-mutates with the character $S$ by calculating a
+co-mutation index called $V_{i}$ for each site $i$ and for each
+character state transition ($0 \rightarrow 1$ for example). The
+higher the $V_{i}$, the higher the probability of $i$ being the
+susceptibility site.
+
+\bigskip The method implemented in \newchitree has been fully
+described in~\citet{Bardel05}. Please refer to this article for a more
+complete description.
+
+\section{\rechaplo}
+Before running \newchitree, you will generally have to reconstruct
+haplotypes %(see section \ref{sec:require} for a description of usable
+%programs).
+The output of the haplotype reconstruction programs are
+totally different from the input files necessary for the phylogenetic
+reconstruction programs. \rechaplo was then written to convert the
+outputs of haplotype reconstruction programs to input files for
+phylogenetic reconstruction programs. It may be particularly useful if
+you want to use \paup because \paup has a very high number of options.
+If you use \rechaplo, an input file with all the options necessary to
+further run \newchitree is produced.
+
+Currently, \rechaplo can deal with two haplotype reconstruction
+programs: \phase~\citep{Stephens01, Stephens03} and
+\famhap~\citep{Becker04} and can produce files for three phylogeny
+reconstruction programs: \paup~\citep{Swofford02},
+\phylip~\citep{Felsenstein04} and \paml~\citep{YangPAML}.
+
+\section{\etHT}\label{description_etiquette}
+\enlargethispage{1cm}
+To perform the localisation analysis, a new character $S$ must be
+added to each haplotype $h$. The state of $S$ depends on the
+proportion of cases carrying the haplotype $h$. You can use your own
+criterion to determine the state of $S$ and add it manually to the
+input file of the phylogeny reconstruction program that will optimise
+the character states changes on the tree.
+
+If you do not want to add the character $S$ manually, you can use \etHT.
+The state of the character $S$ is allocated depending on the
+proportion ($p_h$) of cases carrying the haplotype $h$ compared to the
+proportion $p_0$ of cases in the whole sample.
+
+\begin{itemize}
+\item if $p_h < p_0-\epsilon\sqrt{\frac{p_h\times(1-p_h)}{n_h}}$, $S$
+ is coded ``C'' or ``0'' (high number of controls);
+\item if $p_h > p_0+\epsilon\sqrt{\frac{p_h\times(1-p_h)}{n_h}}$, $S$
+ is coded ``G'' or ``1'' (high number of cases);
+\item else, $S$ is coded ``?'' (unknown data).
+\end{itemize}
+with $n_h$ being the number of individuals carrying the haplotype $h$.
+
+
+
+
+
+
+\chapter{Installing the software}
+
+The software can run on various Linux/Unix platform. %and on MacOS X.
+
+\section{Requirements}
+\label{sec:require}
+
+\subsection{Phylogeny reconstruction programs}
+Before using \altree, you must build a phylogeny of the haplotypes.
+Three phylogeny software are compatible with our program:
+\begin{itemize}
+\item \paup~\cite{Swofford02}: available at
+ \url{http://paup.csit.fsu.edu/}. This software is not free software
+ and must be purchased (100\$ for the unix version).
+\item \phylip~\cite{Felsenstein04}: freely available at
+ \url{http://evolution.genetics.washington.edu/phylip.html} (only
+ usable for the association test)
+\item \paml~\cite{YangPAML}: freely available at
+ \url{http://abacus.gene.ucl.ac.uk/software/paml.html}. As stated by
+ its author, \paml is not good at tree making. So we advise you to
+ use another software to build the tree (for example,
+ \phyml~\cite{Guindon03} and then to use \paml to estimate the
+ character states at each node.
+\end{itemize}
+
+\paragraph{Note:}
+Currently, only the parsimony methods implemented in \paup (command
+\texttt{set}, option \texttt{criterion} set to ``parsimony'') and in
+\phylip (program \texttt{mix}) have been tested. If you want to use
+maximum likelihood (ML), we suggest you to use your favorite software
+to compute the ML tree and then, to use \paml to estimate the
+character states at each node.
+
+\subsection{Required tools}
+\prog{perl} is required to run \altree. \prog{perl} version 5.8.7 or
+higher should work. Lower versions can work, but they have not been
+tested.
+
+If you want to build the program from sources, you will also need a
+C compiler such as \prog{gcc} and the GNU \prog{make} program. They
+are available on most Unix plateforms. Otherwise, a debian package
+containing the binary files is available.%For MacOS X, \prog{gcc} and
+%\prog{make} are available with other tools on the development CD of
+%the OS.
+
+\section{Installation on a linux platform}
+To install this module type the following:\\
+
+\begin{source}
+perl Makefile.PL
+make
+make test
+make install
+\end{source}
+
+\noindent If you prefer to install it in your home directory, then
+type the following:
+\begin{source}
+perl Makefile.PL PREFIX=~
+make
+make test
+make install
+\end{source}
+
+\noindent In this case, do not forget to add \verb+~+\prog{/bin} in your
+\prog{PATH} and \verb+~+\prog{/lib/perl/\textit{perl\_version}/} in
+\prog{PERL5LIB} if they are not already present. For example:
+\begin{source}
+PATH=~/bin:$PATH
+export PATH
+PERL5LIB=~/lib/perl/5.8.7/:$PERL5LIB
+export PERL5LIB
+\end{source}
+
+\vspace{0.5cm}
+
+%Inclure les differentes platformes sur lesquelles ça tourne.\\
+%Voir avec Vince; installation des bibliothèques perl, installation de la bibliothèque C. Avec Linux, paquet debian dispo sur page Vince. Voir si on peut compiler le C pour windows et/ou macOSX.
+
+\chapter{\rechaplo }
+This program converts the output of the haplotype reconstruction
+programs to input for phylogeny reconstruction programs. Each option
+has a long name (which must be preceded by -{}-) and some of them also
+have a short name (which must be preceded by -).
+\section{Summary of the different options}
+
+\begin{options}
+ \option{-{}-version}{program version}
+ \option{-{}-short-help|-h}{brief help message}
+ \option{-{}-help}{help message with option descriptions}
+ \option{-{}-man}{full documentation}
+ \option{-{}-first-input-file|-i \ucode{file}}{Input file 1}
+ \option{-{}-second-input-file|-j \ucode{file}}{Input file 2 (not mandatory, see
+ explanations below)}
+ \option{-{}-output-file|-o \ucode{file}}{Output file 1}
+ \option{-{}-case-control-output|-c \ucode{file}}{Output containing the
+ number of cases/controls}
+ \option{-{}-reconstruct-prog|-r \ccode{phase|famhap}}{Name of the haplotype
+ reconstruction program}
+ \option{-{}-phylo-prog|-p \ccode{paup|phylip}}{Name of the phylogeny reconstruction program}
+ \option{-{}-data-type|-t \ccode{DNA|NUM}}{Type of data: DNA (ATGCU) or NUM (0-9)}
+\end{options}
+
+\section{How to get help?}\label{help}
+
+\subsection{option -{}-short-help or -h}
+This option displays a short help message which recapitulates all the
+options available.
+
+\subsection{option -{}-help}
+This option displays a message with a description of the different options.
+
+\subsection{option -{}-man}
+This option displays the man page for the program.
+
+\subsection{option -{}-version}
+This option gives the number of the version currently used.
+
+\section{Input files}
+This program takes as input files the output files of the haplotype
+recontruction programs. Currently, only \phase (for case/control data)
+and \famhap (for family data) output files are allowed, but we plan to
+extend the number of haplotype recontruction programs usable. The name
+of the haplotype reconstruction program used to generate the input files must be specified after the -r option.
+
+\subsection{Using \phase output file}
+Two different cases must be considered:
+\begin{itemize}
+\item The case-control status of each individual has been specified in the input file for phase and phase has been run with the -c-1 option. In this case only one input file is necessary for \rechaplo: the phase output file (let's call it out.phase). In this case, the program must be run like this: \\
+\begin{source}
+ \rechaploname -r \ccode{phase} -i \ucode{out.phase} -other\_options
+\end{source}
+\item The case-control status of each individual has not been specified in the input file for phase. In this case, two input files are necessary: the phase output file (out.phase) and another file which specifies the disease status for each individual (status.phase). This file consists in two rows: the first contains the individual's ID and the second, their disease status (0=control, 1=case). In this case, the program must be run like this: \\
+\begin{source}
+ \rechaploname -r \ccode{phase} -i \ucode{out.phase} -j
+ \ucode{status.phase} -other\_options
+\end{source}
+\end{itemize}
+
+\subsection{Using \famhap output files}
+The program \rechaplo is designed to use files generated with
+\famhap15 (and not with \famhap12!), \famhap16 has not been tested
+yet. Two options are necessary:
+\begin{description}
+\item [dp] : to take the disease status into account in the haplotype reconstruction
+\item [P] : to make sure that all the haplotypes are present in the output file
+\end{description}
+
+Two input files are necessary for \rechaplo: the \famhap output file whose name has been chosen by the user (let's call it out.famhap), and the output file called input\_name\_H1\_HAPLOTYPES. In this case, the program must be run like this: \\
+\begin{source}
+ \rechaploname -r \ccode{famhap} -i \ucode{out.famhap} -j
+ \ucode{H1\_HAPLOTYPES} -other\_options
+\end{source}
+
+\section{Output files}
+Two different output files are generated:
+\begin{description}
+\item [The main output file. ] Its name should follow the -o
+ option. This file is an input file for the phylogeny reconstruction
+ programs \paup, \paml or \phylip.
+ \item [The second output file. ] Its name should follow the -c
+ option. It contains the number of times a given haplotype is
+ carried by case and control individuals.
+\end{description}
+
+%wo kinds of output files can be generated depending on the phylogeny
+%econstruction program you want to use (\paml and \phylip use the same
+%ype of input files). The name of the phylogeny reconstruction program should follow the -p option.
+
+\subsection{Generating \paup input files (*.paup)}
+The file generated is a nexus file containing the options for \paup
+necessary to run \newchitree after \paup. This is only an example of a
+paup file: we choose to root the tree using an ancestral sequence, but
+this is not necessary and this file should be modified according to
+your data. Examples of \paup input files can be found in the test
+directory: they are labeled *.paup.
+
+%In the output file, the name of each haplotype is formed by the
+%concatenation of an haplotype number (Hxxx), and of the number of
+%cases (mxxx) and controls (cxxx) carrying this haplotype.
+%A character
+%is added to each haplotype: its state is 2 or C for all the haplotypes
+%and must be set to 1 or G for the ancestral sequence. This character
+%is set only to be sure that the phylogeny reconstruction program
+%correctly draw the tree. It does not change the results of the
+%analysis, and it can be removed from the file.
+
+The output file is not a valid \paup input file. Some options are
+indicated within square brackets and must be specified by the user before
+running \paup:
+\begin{itemize}
+\item the sequence of the ancestral haplotype
+\item the maximum number of trees \paup must find
+\item the method to optimise character state changes (\acctran/\deltran)
+\item the name of the different files generated
+\item the number of trees described by paup in the log file (we advise
+ you to keep all the trees, and to limit the number of trees that are
+ analysed later, when running \newchitree).
+\end{itemize}
+The chosen option must be put out of the square brackets because \paup
+ignores what is written within square brackets.
+
+
+
+\subsection{Generating \phylip or \paml input files (*.phy)}
+The file generated is the simplest phylip (also used by \paml) format.
+The first line contains the number of haplotypes and the number of
+sites and the following lines contains an identifier for the haplotype
+(Hxxx) and the haplotype sequence. %A character is added to each
+%haplotype: its state is 0 or C for all the haplotypes and must be set
+%to 1 or G for the ancestral sequence. This character is set only to be sure that the phylogeny reconstruction program correctly draw the tree. It does not change the results of the analysis, and it can be removed from the file.
+
+
+%In this file, you must either add the sequence of the ancestral haplotype in
+%the file out.phylip and prepare a file named ``ancestors'' containing this
+%sequence (don't forget to add the character 1 at the end of the
+%sequence), or eliminate this sequence and modify the number of
+%sequences accordingly if you want to use an outgroup to root the tree.
+
+\subsection{The second output file}\label{description_correspond}
+
+The name of the second output file must follow the -c option. This
+file contains the number of times a given haplotype is found in cases
+and controls. The file format is the following: the label of each
+haplotype and the number of cases and controls carrying it are
+specified, separated by spaces or tabulations. The number of cases
+carrying a given haplotype is preceded by the letter ``m'' and the
+number of controls is preceded by the letter ``c''.
+
+Example of such a file: \\
+\begin{tabular}{ccc}
+H002 & m015 & c001\\
+H003 & m000 & c001\\
+H001 & m000 & c002\\
+%H000\_anc & m000 & c000\\
+\end{tabular}
+
+Other examples may be found in the test directory. These files are
+always labeled ``nb\_cas\_control.txt''.
+
+\section{Other options}
+\subsection{The phylogeny reconstruction program}
+You must specify the name of the phylogeny reconstruction software
+that will be used after the option -p or -{}-phylo-prog option so that the
+corresponding output file can be generated.
+
+\subsection{The haplotype reconstruction program}
+The name of the haplotype reconstruction program (\famhap or \phase)
+must be specified after the option -r or -{}-recontruct-prog.
+
+\subsection{The type of data}
+The user must specify if the data are of type DNA (ATGC) or NUM
+(number from 0 to 9, for the current version of the program, numbers
+superior to 9 cannot be used). It must be specified after the -r option.
+
+%\subsection{Name of the main output file}
+%With the -o option, the user chooses the name of the output file. If -o is omitted, the standard output will be used.
+
+
+
+\chapter{\etHT}
+This program adds a new character (named $S$) to each haplotype
+corresponding to its disease status. Each option has a long name
+(which must be preceded by -{}-) and some of them also have a short
+name (which must be preceded by -).
+
+\section{Summary of the different options}
+
+\begin{options}
+ \option{-{}-version}{program version}
+ \option{-{}-short-help|-h}{brief help message}
+ \option{-{}-help}{help message with option descriptions}
+ \option{-{}-man}{full documentation}
+ \option{-{}-first-input-file|-i \ucode{file}}{Input file 1}
+ \option{-{}-second-input-file|-j \ucode{file}}{Input file 2: nb cases/controls per haplotype}
+ \option{-{}-output-file|-o \ucode{file}}{Output file}
+ %-r & Haplotype reconstruction program\\
+ \option{-{}-proportion|-p \ucode{number}}{proportion of cases in the sample}
+ \option{-{}-epsilon|-e \ucode{number}}{$\epsilon$ parameter}
+ \option{-{}-data-type|-t \ccode{DNA|SNP}}{data type: SNP or DNA}
+ \option{-{}-outgroup|-g \ucode{outgroup\_name}} {Name of the
+ outgroup (if necessary)}
+ \option{-{}-low|-l}{forces the state of character $S$ to be ``?'' for haplotypes carried by 1 individual}
+\end{options}
+
+%\section{Description}
+%This program use a paup input file (input.paup) as input file, and generate a new paup input file (input\_et.paup) after having added a new character S to each haplotype.
+%
+%S excluded from the reconstruction of the tree, but included for the apomorphy recontrsuction -> modif of the paup block
+
+%les 2 facon de coder le caractere S.
+
+%Pb pour 1 ind.
+
+\section{How to get help?}
+See the same section for the program \rechaplo (page \pageref{help}).
+\section{Input file (-i option)}
+The name of the input file must be specified after the -i option. The
+input file must be a valid \paup (nexus) or \phylip/\paml input
+file. If it is a \paup file, make sure that the line following the
+description of the last haplotype in the data block includes a semi colon only.
+
+
+\section{Output file (-o option)}
+The name of the output file can be specified after the -o option. If
+the -o option is not present, the standard output is used.
+
+The output file is a \paup or \paml input file. The character $S$ is
+coded ``G'' or ``1'' for cases and ``C'' or ``0'' for controls. In
+the \paup input file generated, a new command is added, which excludes
+the character $S$ from the tree reconstruction process, and includes it
+in the table of apomorphies. If you want to use \paml, no such command
+exists. We advise you to reconstruct the phylogeny on the data set
+without the character $S$ by using your favorite phylogeny
+reconstruction program. Then, you give that tree and the data-set with
+the S-character to \paml to obtain the apomorphie list.
+
+\section{Other options}
+
+
+\subsection{Proportion of cases in the sample}
+The proportion of cases in the sample must be specified after the -p option
+
+\subsection{The epsilon value}
+It corresponds to the parameter $\epsilon$ (see the description of the
+program in section \ref{description_etiquette}, page
+\pageref{description_etiquette}). If $\epsilon$ is high, haplotypes
+will more often have a character $S$ coded ``?''. To give an idea, in our article~\citep{Bardel05}, $\epsilon$ was set to 1.
+
+\subsection{Data type}
+The -t option must be followed either by \cmd{SNP} or by \cmd{DNA}. \cmd{SNP}
+should be used if you have numerical data (characters coded from 0 to 9).
+ \cmd{DNA} must be used if you have DNA data (A, T, G, C).
+
+
+ \subsection{Haplotypes carried by only 1 individual}
+ The -l option is not mandatory: if it is present, $S$ is coded ``?''
+ for all the haplotypes present only once in the sample, whatever the
+ disease status of the individual carrying it. If -l is not specified,
+ the state of $S$ will be chosen according to the formula (see section
+ \ref{description_etiquette}, page \pageref{description_etiquette}).
+
+\subsection{Name of the outgroup}
+If the outgroup is not specified in the file containing the number of cases an
+controls but is in the file containing the sequences, the name of the
+outgroup must be provided to \etHT so that the program can identify
+the outgroup sequence. For this sequence, the state of the character
+$S$ will be ``?''.
+
+\chapter{\newchitree}
+This program can perform either an association test or a localisation
+test. Each option has a long name (which must be preceded by -{}-) and
+some of them also have a short name (which must be preceded by -).
+
+\section{Summary of the different options}
+\begin{options}[p{.54\linewidth}]
+\option{-{}-version}{program version}
+\option{-{}-short-help|-h}{brief help message}
+\option{-{}-help}{help message with option descriptions}
+\option{-{}-man}{full documentation}
+\option{-{}-association|-a}{perform the association test}
+\option{-{}-s-localisation|-l}{perform the localisation test}
+\option{-{}-first-input-file|-i \ucode{file}}{output file from phylogeny program}
+\option{-{}-second-input-file|-j \ucode{file}}{nb cases/controls per haplotype}
+\option{-{}-output-file|-o \ucode{file}}{output file}
+\option{-{}-data-type|-t \ccode{DNA}|\ccode{SNP}}{type of data}
+
+\option{-{}-remove-outgroup }{remove the outgroup
+ sequence for the analysis}
+\option{-{}-outgroup \ucode{outgroup\_name}}{specify the name of the
+ outgroup sequence}
+
+\option{-{}-anc-seq \ucode{ancestral\_sequence}}{ancestral sequence (only
+ useful with \phylip)}
+\option{-{}-tree-building-program|-p \hspace*{\fill}\ccode{PHYLIP}|\ccode{PAUP}|\ccode{PAML}}{phylip or paup or paml}
+%\option{-{}-splitmode|-s \ccode{nosplit}|\ccode{chi2split}}{}
+\option{-{}-no-prolongation}{no prolongation of branches}
+\option{-{}-chi2-threshold|-n \ucode{value}}{threshold value}
+\option{-{}-permutations|-r \ucode{number}}{number of permutations to perform}
+\option{-{}-number-of-trees-to-analyse \ucode{number}}{total number of trees to analyse}
+\option{-{}-tree-to-analyse \ucode{number}}{number of the tree to analyse}
+\option{-{}-s-site-number \ucode{number}}{position of the $S$ character in the sequence}
+\option{-{}-s-site-characters
+ \hspace*{\fill}\ucode{anc\_state}\ccode{->}\ucode{der\_state}}{ancestral state -> derived state for $S$}
+\option{-{}-co-evo|-e \ccode{simple}|\ccode{double}}{simple or double}
+\option{-{}-print-tree}{print the tree with the character state changes in the output file}
+
+\end{options}
+
+
+\section{How to get help?}
+See the same section for the program \rechaplo (page \pageref{help}).
+
+\section{General options}
+These options are used both for association and for localisation test.
+
+\subsection{First input file (option -{}-first-input-file or -i)}
+ This file is the output file of the phylogeny reconstruction
+ program.
+
+\subsubsection{If \paup is used}
+To run \newchitree, some informations must be present in the input
+file for \newchitree (=output file of \paup). In particular, the
+apomorphy list and a table contining branch lengths must be present.
+For these information to be present, in the \cmd{describetrees}
+command you must use the following options: \cmd{brlens=yes} and
+\cmd{apolist=yes};
+
+
+Examples of \paup input files containing the options necessary to
+run \newchitree are provided in the \code{test/paup} directory. These
+files are labeled \fn{*.paup}.
+
+\subsubsection{If \phylip is used}
+The input file for \newchitree is the output file named ``outfile'' by
+\phylip. Currently, \newchitree only works with output data from the program
+\texttt{MIX} (0/1 data). We plan to adapt it to other reconstruction
+program.
+
+To generate a correct input file for \newchitree, you must use different
+options for \phylip depending on your rooting method:
+\begin{itemize}
+\item If you want to root the tree using an outgroup: you must root the tree on the chosen outgroup by using the option \cmd{o}.
+\item If you want to root the tree using the ancestral character states: you have to prepare a file named \fn{ancestors} containing the ancestral sequence. Then, when running \phylip, you must use the option \cmd{a} (see the \phylip manual for more information).\\
+ %To run \newchitree, the ancestral sequence must be present in the sample, so we advise you to root the tree using this ancestral sequence as outgroup by using the option \cmd{o}. \\
+ % In this case, you will have to use the option ``-{}-anc-seq'' when running \newchitree.
+\end{itemize}
+
+Moreover, the states at all nodes of the tree must appear in the output file, so you must set the option \cmd{5} to \cmd{yes}.
+
+\subsubsection{If \paml is used}
+The input file for \newchitree is the output file named ``rst'' by
+\paml.
+
+\subsection{Second input file (option -{}-second-input-file or -j)}
+This input file consists in lines containing the label of each
+haplotype followed by the number of cases and controls carrying it
+separated by spaces or tabulations. The number of cases should be
+preceded by a ``m``(or the word ``case'', possibly followed by a
+``\_''), the number of controls should be preceded by the letter ``c''
+(or the word ``control'', possibly followed by a ``\_'').
+
+Example of such files are given in the test directory. These files are
+always labeled \fn{nb\_cas\_control.txt}.
+
+\subsection{Output file (option -{}-output-file or -o)}
+You can choose the name of the output file by using the -{}-output-file or -o option. If this option is not specified, the standard output is used.
+
+\subsection{Name of the phylogeny program used (option -{}-tree-building-program or -p )}
+After the option -p, you must specify which phylogeny reconstruction
+program (\paup, \phylip or \paml) was used to generate the first input file.
+
+\subsection{Data type (option -{}-data-type or -t)}
+The option -t must be followed either by \cmd{SNP} or by \cmd{DNA}. \cmd{SNP}
+should be used if you have numerical data (from 0 to 9).
+ \cmd{DNA} must be used if you have DNA data (A, T, G, C).
+Warning: the DNA option currently does not work if you have
+reconstructed the phylogeny with phylip.
+
+\subsection{Print tree (option -{}-print-tree)}
+If this option is specified, the tree with the character state changes
+along the branches will be written in the output file. It may
+especially be useful when you are performing the localisation
+analysis, because in this case, the tree is not written in the output
+file by default.
+
+\textit{Warning: if several trees are analysed, with the -{}-print-tree option,
+they will \emph{all} be printed in the output file.}
+
+
+
+\section{Association test (option -{}-association or -a)}
+When the -a option is used, the program will perform the phylogeny-based association test.
+
+\subsection{Options specific to the association test}
+
+%\subsubsection{Root method (-{}-root-method)}
+%To perform the association test, the tree must be rooted. Depending on your data, you may want to root either on an ancetral sequence (-{}-root-method ancestor) or on an outgroup (-{}-root-method outgroup).
+
+%\begin{center}
+%%\begin{boxedminipage}[width=0.5\linewidth]
+%\includegraphics[width=0.45\linewidth]{anc_outg.fig}
+%%\end{boxedminipage}
+%\end{center}
+
+%\subsubsection{Name of the root (-{}-root)}
+%This option must be followed by the name of the sequence you choose to root the tree (either the outgroup or the ancestor).
+\subsubsection{Removing the outgroup (option -{}-remove-outgroup)}
+The outgroup may either be a sequence of the sample for which the
+number of cases and controls carrying it is defined or a sequence for
+which we don't have any cases or controls (for example, an ape
+sequence). In this last case, the outgroup must be removed from the
+sample before the analysis. It is possible by specifying the option
+-{}-remove outgroup.
+
+\subsubsection{Name of the outgroup (option -{}-outgroup)}
+This option will be useful in two cases:
+\begin{itemize}
+\item If you work on an unrooted tree (with \paml or \paup): for the
+ association test, the tree \emph{must be rooted} because the
+ analysis starts from the root. You must then specify the name of the
+ sequence you choose as outgroup after the option -{}-outgroup and
+ \newchitree will perform the rooting.
+\item If you want to remove an outgroup from the analysis: if you work
+ with \phylip, you will have to specify the name of the outgroup
+ which should be removed after the option -{}-outgroup. This is not necessary
+ with \paup because the outgroup is identified by a star in the paup
+ output file, so \newchitree can find it.
+\end{itemize}
+
+\subsubsection{Number of permutations (option -{}-permutations or -r)}
+The program can compute a type I error corrected for multiple testing
+associated with the test by using a permutation procedure such as the
+one described in~\citet{Ge03} and in~\citet{Becker04}. In this case,
+the user must define the number of permutations to perform to evaluate
+the type I error by using the -{}-permutation (or -r) option. This
+number should be high, but the higher it is, the longer the
+computation time will be. Depending on the studied data sets, we
+suggest this number to be chosen between 10000 and 100000.
+
+\subsubsection{Threshold for chi-square significance (option chi2-threshold or -n)}
+If you do not want to compute the exact type I error by permutation, a
+significance threshold for the \chisquares can be chosen by the user
+using the -{}-chi2-threshold (or -n) option. In this case, you must
+put the -{}-permutation option to zero.
+
+\subsubsection{Branch prolongation (option -{}-no-prolongation)}
+If the -{}-no-prolongation option is specified in the command line, the different
+branches of the tree will not be prolonged. (see
+figure~\ref{fig:option_b}).
+
+
+\begin{figure}[htb]
+\begin{tabular}{|l|c|c|}
+ \cline{2-3}
+\multicolumn{1}{c|}{}& \includegraphics[width=0.4\linewidth, subfig=1]{option_b.fig} &
+\includegraphics[width=0.4\linewidth, subfig=2]{option_b.fig} \\
+\cline{2-3}
+\multicolumn{1}{c|}{}& With the -{}-no-prolongation option & Without the -{}-no-prolongation option \\
+\cline{2-3}
+\multicolumn{1}{c|}{}&\multicolumn{2}{|c|}{The \chisquares are calculated between\footnote{The
+ nosplit pattern of \chisquare is used}:} \\
+\hline
+ Level 1:& 1 - 2 and 3 & 1 2 and 3 \\
+ Level 2:& 2.1 - 2.2 - 3.1 - 3.2 & 1 - 2.1 - 2.2 - 3.1 and 3.2 \\
+ Level 3:& 3.2.1 and 3.2.2 & 1 - 2.1 - 2.2 - 3.1 - 3.2.1 and 3.2.2\\
+ \hline
+\end{tabular}
+
+\caption{Effect of the -b option}
+\label{fig:option_b}
+\end{figure}
+
+\textit{Warning: This option is currently under development. At present, the
+ program has only been tested \emph{without} the
+ \fn{-{}-no-prolongation} option specified.
+If you choose not to, you may encounter some problems.}
+
+
+\subsubsection{Ancestral sequence (option -{}-anc-seq)}
+This option is only necessary when the tree is rooted using an
+ancestral sequencce with \phylip. In this case, the ancestral sequence
+not being in the output file of \phylip, \newchitree cannot read it
+directly. So, you have to enter it manually after the -{}-anc-seq
+option.
+
+\subsubsection{Choice of the tree that will be analysed (option
+ -{}-tree-to-analyse)}
+This option enables the user to specify the number of the tree that
+will be analysed among all the equiparsimonious trees present in the
+input file (the -{}-tree-to-analyse must be followed by the number of
+the chosen tree in the input file). If this option is not specified,
+the tree will be randomly drawn among all the equiparsimonious trees.
+
+\subsection{Description of the output file}
+Examples of output files are displayed in the test directory. They are
+labelled *.asso.
+
+The output file shows the tree, with the number of cases an controls at each nodes. At the root of the tree, there is a list of the different tests performed on the tree: the level of the test is indicated within square brackets, followed by the number of degrees of freedom (df=), the value of the \chisquare test and the corresponding p-value. In a second part of the file, a list of the p-values estimated by permutations (but non corrected for multiple testing) for each level of the tree is provided. Then, the last line gives the corrected p-value for the test.
+
+
+\section{Localisation test (option -{}-s-localisation or -l)}
+
+\subsection{Options specific to the localisation}
+\subsubsection{Number of trees (option -{}-number-of-trees-to-analyse)}
+With this option, you choose the number of trees to
+use in the localisation test. These trees are randomly sampled without
+replacement among all the equiparsimonious trees in the first input file.
+
+\subsubsection{-{}-s-site-number }
+With this option, you specify the position of the character $S$ in the haplotypes. The first site is numbered 1.
+
+\subsubsection{ -{}-s-site-characters ancestral state -> derived state}
+With this option, you specify which state is the ancestral state and
+which state is the derived state for the character $S$. The two states
+must be separated by the symbol ``->''. For example, if the character $S$ has two states 1 and 2, 1 being the ancestral state, you will use the option as follows: \\
+\newchitree [other options ] -{}-s-site-characters ``1->2''\\
+Be careful: this option is \emph{case sensitive} and the \emph{quotes
+ are mandatory}.
+
+\subsubsection{ -{}-co-evo|e simple|double}
+This option enables to choose how the $V_{i}$ are calculated.
+
+\paragraph{option ''simple''}
+This option corresponds to the calculation of $V_{i}$ described in \citet{Bardel05}. Please refer to this publication for more information.
+
+
+\paragraph{option ''double''}
+This option corresponds to a new method to calculate $V_{i}$. This method seems to be more appropriate because it takes into account the two senses of character state changes. \\
+Here is a short description of this new calculation method (one studied tree):
+\begin{itemize}
+\item Let $E^{0 \rightarrow 1}_{i}$ be the number of expected co-mutations of $S$ (2 character states: T [control] and M [case]) and $i$ (2 character states 0 and 1)
+ $$E^{0 \rightarrow 1}_{i}=\frac{(m^{0 \rightarrow 1}_{i}\times
+ s^{T \rightarrow M})+(m^{1 \rightarrow 0}_{i}\times
+ s^{M \rightarrow T})}{b}$$ \\
+ where:
+ \begin{description}
+ \item[$m^{0 \rightarrow 1}_{i}$ (resp. $m^{1 \rightarrow 0}_{i}$)~:]
+ nb transitions $0 \rightarrow 1$ (resp. $1 \rightarrow 0$) of $i$
+ \item[$s^{T \rightarrow M}$ (resp.$ s^{M \rightarrow T}$)~:] nb
+ transitions $T \rightarrow M$ (resp. $M \rightarrow T$) of $S$
+ \item[$b$~:] nb branches of tree $t$
+ \end{description}
+\item Let $R^{0 \rightarrow 1}_{i}$ be the number of observed co-mutations of $S$ and $i$ on tree $t$
+\item $V^{0 \rightarrow 1}_{i}$ is calculated as defined in \cite{Bardel05}:
+\end{itemize}
+
+$$\boxed{
+ \left\{\begin{array}{ll}
+ V^{0 \rightarrow 1}_{i}=0 & if\ E^{0 \rightarrow 1}_{i}=0 \\
+ V^{0 \rightarrow 1}_{i}=\frac{\displaystyle{R^{0 \rightarrow 1}_{i}-E^{0 \rightarrow 1}_{i}}}%
+ {\displaystyle{\sqrt{E^{0 \rightarrow 1}_{i}}}}
+ & if \ E^{0 \rightarrow 1}_{i} \ne 0
+ \end{array}
+ \right.
+}$$
+
+If more than one tree is studied, the $V^{0 \rightarrow 1}_{i}$ must be summed for all the trees.
+
+\subsection{Description of the output file}
+The output file contains only a list of the different $V_i$ (in
+ascending order) for the different sites and the different character
+state transitions. The sites with the highest $V_i$ are putative
+susceptibility sites.
+
+
+\chapter{Example files}
+
+The \fn{test} directory contains example files for the three phylogeny
+reconstruction programs. The files are grouped in four directories:
+\begin{itemize}
+\item \fn{create\_file} which contains files and instructions necessary to
+ obtain \paup or \paml/\phylip file formats from output files of the
+haplotype reconstruction program.
+\item \fn{\paup}, \fn{\phylip} and \fn{\paml} which contain files and
+ instructions necessary to perfom association and localisation tests
+\end{itemize}
+
+In each directory, all the input and output files for all the programs
+and a bash script containing the different command lines are provided.
+ % TODO Ajouter le changement des chemins!!
+
+\section{Obtention of input files for phylogeny reconstruction
+ programs}
+
+The \fn{create\_file} directory is divided into 2 sub-directories:
+\fn{paup\_file} and \fn{phy-paml\_file}. In these directories, we
+present how to obtain input files for \paup and \phylip (or \paml)
+from output files of the haplotype reconstruction programs \phase
+and \famhap.
+
+\subsection{Creating \paup input files from \phase output file}
+The \fn{paup\_file} directory contains case/control data (12 SNPs
+genotyped for 100 case and 100 control individuals). The haplotypes
+are reconstructed using \phase and the \paup input file is generated
+using \rechaplo. The different files available in this directory are
+the following:
+\begin{description}
+\item [caco.phase~:] an input file for \phase containing the disease
+ status for each individual
+\item [caco.phase.out~:] the main \phase output file. It is used
+ as the input file for \rechaplo
+\item [caco.phase.out\_*~:] other \phase output files. They are not
+ useful to run \altree
+\item [caco.prepaup~:] the main \rechaplo output file. It must be
+ completed to become a valid \paup input file
+\item [nb\_cas\_control.txt~:] the \rechaplo output file containing the
+ number of cases and controls carrying each haplotype
+\item [create\_file~:] a bash script containing the two command lines to
+ run respectively \phase and \rechaplo
+\end{description}
+\begin{figure}[htb]
+ \includegraphics[width=\linewidth]{create_file_paup.fig}\centering
+ \caption{Summary of the files and programs used to obtain input
+ files for \paup}
+ \label{fig:create_paup}
+\end{figure}
+
+
+\subsection{Creating \phylip/\paml input files from \famhap output files}
+The \fn{phy-paml\_file} directory contains family data (10 SNPs
+genotyped for 100 trios: 2 parents + 1 affected child). The haplotypes
+are reconstructed using \famhap and the \phylip/\paml input file is
+generated using \rechaplo. The different files available in this
+directory are the following:
+\begin{description}
+\item [fam19\_0~:] an input file for \famhap (linkage format without headers)
+\item [trio.fmh and fam19\_0\_H1\_HAPLOTYPES~:] the two \famhap output
+ files used by \rechaplo
+\item [fam19\_0\_*~:] all other \famhap output files. They are not
+ useful to run \altree
+\item [trio.phy~:] the main \rechaplo output file. It is an input file
+ for \phylip
+\item [nb\_cas\_control.txt~:] the \rechaplo output file containing the
+ number of cases and controls carrying each haplotype
+\item [create\_file~:] a bash script containing the two command lines to
+ run respectively \famhap and \rechaplo
+\end{description}
+% These example files correspond to two
+%situations:
+%\begin{itemize}
+%\item case/control data (100 case and 100 control individuals): they are analysed using \paup
+%\item family data (100 trios: 2 parents + 1 affected child): they are analysed using \phylip or \paml
+%\end{itemize}
+
+\begin{figure}[htb]
+ \includegraphics[width=0.9\linewidth]{create_file_phy.fig}\centering
+ \caption{Summary of the files and programs used to obtain input
+ files for \phylip or \paml}
+ \label{fig:create_phy}
+\end{figure}
+
+
+\section{Analysing \paup files}
+In the \fn{``test/paup/''} directory, six sub-directories can be found,
+each corresponding to a different way to root (or not) the tree using
+\paup:
+\begin{itemize}
+\item \fn{ancestor\_absent}: In this directory, the tree is
+ rooted using an ancestral sequence which is not in the data set (it can be
+ a consensus sequence for example)
+\item \fn{ancestor\_present}: In this directory, the tree is
+ rooted using an ancestral sequence which is in the data set (it can
+ be the most frequent haplotype in the sample for example)
+\item \fn{outgr\_absent}: In this directory, the tree is
+ rooted using an outgroup which is not carried by case or control
+ individuals (it can be an ape sequence for example)
+\item \fn{outgr\_present}: In this directory, the tree is
+ rooted using an outgroup which is in the data set
+\item \fn{unrooted\_absent}: In this directory, the tree is
+ not rooted with \paup. For the analysis, \newchitree roots the tree
+ using an outgroup (we choose the sequence H000), but \emph{do not} take the
+ outgroup into account for the association test
+\item \fn{unrooted\_present}: In this directory, the tree is
+ not rooted with \paup. For the analysis, \newchitree roots the tree
+ using an outgroup (we choose the sequence H000), and this haplotype
+ \emph{is} taken into account for the association test
+\end{itemize}
+
+All these directories are split in two sub-directories containing the
+files used to perform the association test (directory
+\fn{association}) or the localisation test (directory \fn{localisation})
+
+\emph{Warning: For the localisation test, as the rooting is not necessary,
+the question of the presence or not of an outgroup is irrelevant
+put the -{}-permutation to zero(directories unrooted\_absent and unrooted\_present). The
+two localisation sub-directories thus only correspond to two different data
+sets analysed with \altree.}
+
+\subsection{Association test}
+All the association directories contain the same files:
+\begin{description}
+\item [caco.paup~:] the valid \paup file
+\item [nb\_cas\_control.txt~:] the file containing the number of time
+ each haplotype is carried by case and control individuals
+\item [test.res.log~:] the \paup output file which is used as an
+ \newchitree input file
+\item [test.tree:~] the other \paup output file, which is not useful
+ for \newchitree
+\item [1\_caco.asso:~] the \newchitree output file. The number of
+ permutation being limited to 1, the corrected p-value doesn't mean
+ anything!
+\item [run\_altree:~] a bash script containing the two command lines to
+ run respectively \paup and \newchitree (association test)
+\end{description}
+
+\begin{figure}[htb]
+ \includegraphics[width=0.95\linewidth]{association_paup.fig}\centering
+ \caption{Summary of the different files and programs used for the
+ association test (using \paup)}
+ \label{fig:paup_asso}
+\end{figure}
+
+
+\subsection{Localisation test}
+All the localisation directories contain the same files:
+\begin{description}
+\item [caco.paup:~] the valid \paup file
+\item [nb\_cas\_control.txt~:] the file containing the number of time
+ each haplotype is carried by case and control individuals
+\item [et\_caco.paup:~] the output file of \etHT. It is a valid \paup
+ input file in which the character $S$ has been added
+ \item [test.res.log~:] the \paup output file which is used as an
+ \newchitree input file
+\item [test.tree:~] the other \paup output file, which is not useful
+ for \newchitree
+\item [caco.loc:~] the \newchitree output file, result of the
+ localisation test
+\item [run-prog:~] a bash script containing the three command lines to
+ run respectively \etHT, \paup and then \newchitree (localisation test)
+\end{description}
+
+\begin{figure}[htb]
+ \includegraphics[width=\linewidth]{localisation_paup.fig}\centering
+ \caption{Summary of the different files and programs used for the
+ localisation test (using \paup)}
+ \label{fig:paup_loc}
+\end{figure}
+
+\section{Analysing \phylip files}
+In the \fn{\phylip} directory, four sub-directories can be found,
+corresponding to various rooting methods. These directories are
+similar to the ones described for \paup. They contains only one
+sub-directory named \fn{association}. For the moment, \altree cannot
+deal with \phylip files as input files for the localisation test
+because when there are ambiguities in the apomorphie reconstructions,
+\phylip keeps them in the output file and the state ``?'' is assigned
+to the ambiguous character. At present, \altree cannot deal with
+these ambiguities.
+
+
+\subsection{Association test}
+All the association directories contain almost the same files:
+\begin{description}
+\item [trio.phy:~] the \phylip input file
+\item [nb\_cas\_controls.txt:~] it contains the number of time
+ each haplotype is carried by case and control individuals
+\item [outfile:~] the \phylip output file which is used as an
+ \newchitree input file
+ \item [outtre:~] the other \phylip output file, which is not useful
+ for \newchitree
+ \item [1\_trio\_phy.asso:~] the \newchitree output file, result of the
+ localisation test
+\item [run-altree:~] a bash script containing the two command lines to
+ run respectively \phylip and \newchitree (association test)
+\item [ancestors:~] it contains the ancestral sequence. This file is
+ needed only if the tree is rooted using an ancestral sequence (\fn{ancestor\_absent} and \fn{ancestor\_present} directories)
+\end{description}
+
+\begin{figure}[htb]
+ \centering
+ \includegraphics[width=0.9\linewidth]{association_phylip.fig}
+ \caption{Summary of the different files and programs used for the
+ association test (using \phylip)}
+ \label{fig:phylip_asso}
+\end{figure}
+
+
+\section{Analysing \paml files}
+
+In the directory \fn{\paml}, three sub-directories can be found:
+\begin{description}
+\item [tree\_building\_using\_phyML:~] as stated by its author, \paml is not a very good tool for tree
+ reconstruction. In this example, we choose to reconstruct the
+ phylogenetic tree using the software \phyml~\citep{Guindon03}. The
+ phylogenetic reconstruction step has been performed in this directory
+\item[\fn{unrooted\_absent} and \fn{unrooted\_present}:~] which are
+ similar to ones described for \paup.
+\end{description}
+
+\subsection{Phylogenetic tree reconstruction using \phyml}
+The files necessary for the phylogenetic reconstruction can be found
+in the directory \fn{tree\_building\_using\_phyML}. The input file for
+\phyml is the phylip format file named \fn{trio2.phy}. The options
+used to run \phyml are specified in the file \fn{run\_phyml}. The
+other files in the directory are \phyml output files. In the
+following, we will only use the file \fn{trio2.phy\_phyml\_tree.txt}
+which contains the reconstructed phylogenetic tree.
+
+\subsection{Association test}
+The two \fn{association} directories contain the same files:
+\begin{description}
+\item [trio2.phy:~] the \phylip format file containing the
+ sequences. It is used as an input file for \paml
+\item [nb\_cas\_controls.txt:~] it contains the number of time
+ each haplotype is carried by case and control individuals
+\item [trio2.phy\_phyml\_tree.txt:~] the output file of \phyml. It
+ is also used as an input file for \paml
+\item [baseml.ctl:~] the parameter file used by \paml
+\item [rst:~] the \paml output file which will be used by
+ \newchitree. It contains the apomorphy list and the tree structure
+\item[2base.t, lnf, mlb, rst1 and rub:~] all the other \paml
+ output files. They are not useful for \newchitree
+\item [1\_trio\_ML.asso:~] the \newchitree output file, result of the
+ association test
+\item [run\_altree:~] a bash script containing the two command lines to
+ run respectively \paml and \newchitree (association test)
+\end{description}
+
+\begin{figure}[htb]
+ \includegraphics[width=0.9\linewidth]{association_paml.fig}\centering
+ \caption{Summary of the different files and programs used for the
+ association test (using \paml)}
+ \label{fig:paml_asso}
+\end{figure}
+
+
+\subsection{Localisation test}
+With \paml, only unrooted trees are obtained. These unrooted trees can
+be directly analysed with \newchitree, so the question of the presence
+or absence of an outgroup is irrelevant. Only one localisation
+directory exists, it is located in the directory \fn{unrooted\_present}.
+
+The \fn{localisation} directory contains the following files:
+\begin{description}
+\item[trio2.phy:~] the \phylip format file without the character $S$
+\item [et\_trio2.phy:~] the \phylip format file including the character
+ $S$. It is one of the input file for \paml
+\item [nb\_cas\_controls.txt:~] contains the number of time
+ each haplotype is carried by case and control individuals
+\item [trio2.phy\_phyml\_tree.txt:~] the output file of \phyml (tree
+ reconstructed without taking the character $S$ into account). It
+ is also an input file for \paml
+\item [baseml.ctl:~] the parameter file used by \paml
+\item [rst:~] the \paml output file which will be used by
+ \newchitree. It contains the apomorphy list and the tree structure
+\item[2base.t, lnf, mlb, rst1 and rub:~] all the other \paml
+ output files. They are not useful for \newchitree
+\item [trio2.loc:~] the \newchitree output file, result of the
+ localisation test
+\item [run-prog:~] a bash script containing the three command lines to
+ run respectively \etHT, \paml and \newchitree (localisation test)
+\end{description}
+
+\begin{figure}[htb]
+ \includegraphics[width=\linewidth]{localisation_paml.fig}\centering
+ \caption{Summary of the different files and programs used for the
+ localisation test (using \paml)}
+ \label{fig:paml_loc}
+\end{figure}
+
+\chapter{URLs where programs can be downloaded}
+\section{Haplotype reconstruction programs}
+\famhap \url{http://www.uni-bonn.de/%7Eumt70e/becker.html}
+
+\phase \url{http://www.stat.washington.edu/stephens/software.html}
+
+\section{Phylogeny reconstruction programs}
+\paup \url{http://paup.csit.fsu.edu/}
+
+\phylip \url{http://evolution.genetics.washington.edu/phylip.html}
+
+\paml \url{http://abacus.gene.ucl.ac.uk/software/paml.html}
+
+\phyml \url{http://atgc.lirmm.fr/phyml/}
+
+\bibliographystyle{plainnat}
+\bibliography{stage}
+
+\end{document}
+\annexe
+\chapter{GNU GENERAL PUBLIC LICENSE}
+\label{GPL}
+\begin{center}
+ {\Large GNU GENERAL PUBLIC LICENSE} \\
+ Version 2, June 1991
+\end{center}
+Copyright (C) 1989, 1991 Free Software Foundation, Inc. \\
+59 Temple Place, Suite 330, Boston, MA 02111-1307 USA \\
+Everyone is permitted to copy and distribute verbatim copies
+of this license document, but changing it is not allowed.
+
+\section{Preamble}
+
+ The licenses for most software are designed to take away your
+freedom to share and change it. By contrast, the GNU General Public
+License is intended to guarantee your freedom to share and change free
+software--to make sure the software is free for all its users. This
+General Public License applies to most of the Free Software
+Foundation's software and to any other program whose authors commit to
+using it. (Some other Free Software Foundation software is covered by
+the GNU Library General Public License instead.) You can apply it to
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+
+ When we speak of free software, we are referring to freedom, not
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+
+ For example, if you distribute copies of such a program, whether
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+ We protect your rights with two steps: (1) copyright the software, and
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+ The precise terms and conditions for copying, distribution and
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+\section{GNU GENERAL PUBLIC LICENSE}
+\subsection{TERMS AND CONDITIONS FOR COPYING, DISTRIBUTION AND MODIFICATION}
+
+ 0. This License applies to any program or other work which contains
+a notice placed by the copyright holder saying it may be distributed
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+ 10. If you wish to incorporate parts of the Program into other free
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+
+\section{NO WARRANTY}
+
+ 11. BECAUSE THE PROGRAM IS LICENSED FREE OF CHARGE, THERE IS NO WARRANTY
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+POSSIBILITY OF SUCH DAMAGES.
+
+ END OF TERMS AND CONDITIONS
+
+ How to Apply These Terms to Your New Programs
+
+ If you develop a new program, and you want it to be of the greatest
+possible use to the public, the best way to achieve this is to make it
+free software which everyone can redistribute and change under these terms.
+
+ To do so, attach the following notices to the program. It is safest
+to attach them to the start of each source file to most effectively
+convey the exclusion of warranty; and each file should have at least
+the "copyright" line and a pointer to where the full notice is found.
+
+ <one line to give the program's name and a brief idea of what it does.>
+ Copyright (C) <year> <name of author>
+
+ This program is free software; you can redistribute it and/or modify
+ it under the terms of the GNU General Public License as published by
+ the Free Software Foundation; either version 2 of the License, or
+ (at your option) any later version.
+
+ This program is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ GNU General Public License for more details.
+
+ You should have received a copy of the GNU General Public License
+ along with this program; if not, write to the Free Software
+ Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+
+
+Also add information on how to contact you by electronic and paper mail.
+
+If the program is interactive, make it output a short notice like this
+when it starts in an interactive mode:
+
+ Gnomovision version 69, Copyright (C) year name of author
+ Gnomovision comes with ABSOLUTELY NO WARRANTY; for details type `show w'.
+ This is free software, and you are welcome to redistribute it
+ under certain conditions; type `show c' for details.
+
+The hypothetical commands `show w' and `show c' should show the appropriate
+parts of the General Public License. Of course, the commands you use may
+be called something other than `show w' and `show c'; they could even be
+mouse-clicks or menu items--whatever suits your program.
+
+You should also get your employer (if you work as a programmer) or your
+school, if any, to sign a "copyright disclaimer" for the program, if
+necessary. Here is a sample; alter the names:
+
+ Yoyodyne, Inc., hereby disclaims all copyright interest in the program
+ `Gnomovision' (which makes passes at compilers) written by James Hacker.
+
+ <signature of Ty Coon>, 1 April 1989
+ Ty Coon, President of Vice
+
+This General Public License does not permit incorporating your program into
+proprietary programs. If your program is a subroutine library, you may
+consider it more useful to permit linking proprietary applications with the
+library. If this is what you want to do, use the GNU Library General
+Public License instead of this License.
+
+\end{document}
+
+% LocalWords: outgroup paup
diff --git a/trunk/Documentation/stage.bib b/trunk/Documentation/stage.bib
new file mode 100644
index 0000000000000000000000000000000000000000..7f855bcb2d4355f24005f3bd1dccb58b925d0d7c
--- /dev/null
+++ b/trunk/Documentation/stage.bib
@@ -0,0 +1,1108 @@
+%Pour month: mettre les trois premièeres lettres du nom du mois en anglais, sans accolades ex: month=APR, %
+
+% Mettre and others au lieu de et al. %
+
+
+
+
+@Article{Abecasis00,
+ author = {G R Abecasis and W O Cookson},
+ title = {G{O}{L}{D}--graphical overview of linkage disequilibrium},
+ journal = {Bioinformatics},
+ year = {2000},
+ OPTkey = {},
+ volume = {16},
+ number = {2},
+ pages = {182-183},
+ month = {Mar},
+ OPTnote = {},
+ OPTannote = {}
+}
+
+@Article{Almasy01,
+ author = {L Almasy and J D Terwilliger and D Nielsen and T D Dyer and D Zaykin and J Blangero},
+ title = {{G}{A}{W}12: {S}imulated genome scan , sequence, and family data for a common disease},
+ journal = {Genet epidemiol},
+ year = {2001},
+ OPTkey = {},
+ volume = {21 (Suppl 1)},
+ OPTnumber = {},
+ pages = {S332--S338},
+ OPTmonth = {},
+ OPTnote = {},
+ OPTannote = {}
+}
+
+
+
+@Article{Akey01,
+ author = {J Akey and L Jin and M Xiong},
+ title = {Haplotypes \textit{vs} single marker linkage disequilibrium tests: what do we gain?},
+ journal = {European J of Hum Genet},
+ year = {2001},
+ OPTkey = {},
+ volume = {9},
+ OPTnumber = {},
+ pages = {291--300},
+ OPTmonth = {},
+ OPTnote = {},
+ OPTannote = {}
+}
+
+
+
+@Article{Bader01,
+ author = {J S Bader},
+ title = {The relalative power of {S}{N}{P}S and haplotype as genetic markers for association tests},
+ journal = {Pharmacogenomics},
+ year = {2001},
+ OPTkey = {},
+ volume = {2},
+ number = {1},
+ pages = {11--24},
+ OPTmonth = {},
+ OPTnote = {},
+ OPTannote = {}
+}
+
+
+@Article{Bardel05,
+ author = {C Bardel and V Danjean and J P Hugot and P Darlu and E G\'enin
+},
+ title = {On the use of haplotype phylogeny to detect disease susceptibi
+lity loci},
+ journal = {BMC Genetics},
+ year = {2005},
+ OPTkey = {},
+ volume = {6},
+ number = {24},
+ OPTpages = {},
+ OPTmonth = {},
+ OPTnote = {},
+ OPTannote = {}
+}
+
+
+% 0370475 (JID)
+@Article{Becker04,
+ Author= {Tim Becker and Michael Knapp},
+ Title= {A powerful strategy to account for multiple testing in the context of haplotype analysis},
+ Journal= {Am J Hum Genet},
+ Year= {2004},
+ Volume= {75},
+ Number= {4},
+ Pages= {561-570},
+ Month= {Oct}
+}
+
+@PhdThesis{these:Bourgain,
+ author = {Bourgain C},
+ title = {Intérêt des populations à effet fondateur pour la recherche de facteurs de risques génétiques des maladies multifactorielles},
+ school = {Université {P}aris {XI}},
+ year = {2001},
+ OPTkey = {},
+ OPTtype = {},
+ OPTaddress = {},
+ OPTmonth = {},
+ OPTnote = {},
+ OPTannote = {}
+}
+
+
+@Article{Bourgain00,
+ author = {C Bourgain and E Génin and H Quesneville and F Clerget-Darpoux },
+ title = {Search for multifactorial disease susceptibility genes in founder populations},
+ journal = {Ann Hum Genet},
+ year = {2000},
+ OPTkey = {},
+ volume = {64},
+ OPTnumber = {},
+ pages = {255--265},
+ OPTmonth = {},
+ OPTnote = {},
+ OPTannote = {}
+}
+
+% 0370475 (JID)
+@Article{Clayton99,
+ Author={D Clayton},
+ Title={A generalization of the transmission/disequilibrium test for uncertain-haplotype transmission},
+ Journal={Am J Hum Genet},
+ Year={1999},
+ Volume={65},
+ Number={4},
+ Pages={1170-1177},
+ Month={Oct}
+}
+
+
+@Article{Collins97,
+ author = {F S Collins},
+ title = {Preparing health professionals for the genetic revolution},
+ journal = {Jama},
+ year = {1997},
+ OPTkey = {},
+ volume = {278},
+ OPTnumber = {},
+ pages = {1285--1286},
+ OPTmonth = {},
+ OPTnote = {},
+ OPTannote = {}
+}
+
+
+@Article{Collins98,
+ author = {F S Collins and L D Brooks and A Chakravarti},
+ title = {{A} {DNA} polymorphism discovery resource for research on human genetic variation},
+ journal = {Genome Res},
+ year = {1998},
+ OPTkey = {},
+ volume = {8},
+ OPTnumber = {},
+ pages = {1229--1231},
+ OPTmonth = {},
+ OPTnote = {},
+ OPTannote = {}
+}
+
+
+
+
+@Article{Cordell02,
+ author = {H J Cordell and D G Clayton},
+ title = {A unified stpwise regression procedure for evaluating the relative effects of polymorphisms within a gene using case/control or family data: application to HLA in type {I} diabetes},
+ journal = {Am J Hum Genet},
+ year = {2002},
+ OPTkey = {},
+ volume = {70},
+ OPTnumber = {},
+ pages = {124--141},
+ OPTmonth = {},
+ OPTnote = {},
+ OPTannote = {}
+}
+
+@Article{Culverhouse02,
+ author = {R Culverhouse and B K Suarez and J Lin and T Reich},
+ title = {A perspective on epistasis: limits of models displaying no main effect},
+ journal = {Am J Hum Genet},
+ year = {2002},
+ OPTkey = {},
+ volume = {70},
+ OPTnumber = {},
+ pages = {461--471},
+ OPTmonth = {},
+ OPTnote = {},
+ OPTannote = {}
+}
+
+@Misc{genehunter,
+ OPTkey = {},
+ author = {M J Daly and L Kruglyak and S Pratt and N Houstis and M P Reeve and A Kirby and E S Lander},
+ title = {Genehunter, version 2.1},
+ OPThowpublished = {},
+ OPTmonth = {},
+ year = {2001},
+ OPTnote = {available at \url{http://www.fhcrc.org/labs/kruglyak/Downloads/index.html}},
+ OPTannote = {}
+}
+
+@Article{darlugenin,
+ author = {P Darlu and E Génin},
+ title = {Cladistic analysis of haplotypes as an attempt to detect disease susceptibility.},
+ journal = {Genet Epidemiol},
+ year = {2001},
+ OPTkey = {},
+ volume = {21 (Suppl.1)},
+ OPTnumber = {},
+ pages = {S602--S607},
+ OPTmonth = {},
+ OPTnote = {},
+ OPTannote = {}
+}
+
+
+
+@Article{Douglas01,
+ author = {J A Douglas and M Boehnke and E Guillanders and J M Trent and S B Gruber},
+ title = {Experimentally-derived haplotyes substantially increase the efficiency of linkage disequilibrium studies},
+ journal = {Nat Genet},
+ year = {2001},
+ OPTkey = {},
+ volume = {28},
+ OPTnumber = {},
+ pages = {361--364},
+ OPTmonth = {},
+ OPTnote = {},
+ OPTannote = {}
+}
+
+
+
+
+
+@Article{Dubertret04,
+ author = {C Dubertret and L Gouya and N Hanoun and J-C Deybach and J Hadès and M Hamon and P Gorwood},
+ title = {The 3' region of the DRD2 gene is involved in genetic susceptibility to schizophrenia},
+ journal = {Schizophr Res},
+ year = {2004},
+ OPTkey = {},
+ volume = {67},
+ OPTnumber = {},
+ pages = {75-85},
+ OPTmonth = {},
+ OPTnote = {},
+ OPTannote = {}
+}
+
+@Article{Durrant04,
+ author = {C Durrant and K T Zondervan and L R Cardon and S Hunt and P Deloukas and A P Morris},
+ title = {Linkage disequilibrium mapping via cladistic analysis of single-nucleotique polymorphism haplotypes},
+ journal = {Am J Hum Genet},
+ year = {2004},
+ OPTkey = {},
+ volume = {75},
+ OPTnumber = {},
+ pages = {35-43},
+ OPTmonth = {},
+ OPTnote = {},
+ OPTannote = {}
+}
+
+@Article{Fallin01,
+ author = {D Fallin and A Cohen and L Essioux and I Chumakov and M Blumenfeld and D Cohen and N J Schork},
+ title = {Genetic analysis of case/control data using estimated haplotype frequencies: application to {A}{P}{O}{E} locus variation and Alzheimer's {D}isease},
+ journal = {Genome Res},
+ year = {2001},
+ OPTkey = {},
+ volume = {11},
+ OPTnumber = {},
+ pages = {143--151},
+ OPTmonth = {},
+ OPTnote = {},
+ OPTannote = {}
+}
+
+
+
+
+@InBook{Felsenstein,
+ author = {J Felsenstein},
+ ALTeditor = {},
+ title = {Inferring phylogenies},
+ chapter = {Chapter one: Parsimony methods},
+ publisher = {Sinauer Associates, Inc.},
+ year = {2004},
+ OPTkey = {},
+ OPTvolume = {},
+ OPTnumber = {},
+ OPTseries = {},
+ OPTtype = {},
+ OPTaddress = {},
+ OPTedition = {},
+ OPTmonth = {},
+ pages = {1--18},
+ note = {ISBN:0878931775},
+ OPTannote = {}
+}
+
+@Misc{Felsenstein04,
+ OPTkey = {},
+ author = {J Felsenstein},
+ title = {PHYLIP (Phylogeny Inference Package) version 3.6},
+ howpublished = {\url{http://evolution.genetics.washington.edu/phylip.html}},
+ OPTmonth = {},
+ year = {2004},
+ note = {Distributed by the author. Department of Genome Sciences, University of Washington, Seattle},
+ OPTannote = {}
+}
+
+
+@Article{Gabriel02,
+ author = {S B Gabriel and S F Scaffner and H Nguyen and J M Moore and J Roy and B Blumenstiel and J Higgins and M De{F}elice and A Lochner and M Faggart and S N Liu-{C}ordero and C Rotimi and A Adeyamo and R Cooper and R Ward and E S Lander and M J Daly and D Altshuler},
+ title = {The structure of haplotype blocks in the human genome},
+ journal = {Science},
+ year = {2002},
+ OPTkey = {},
+ volume = {296},
+ OPTnumber = {},
+ pages = {2225--2229},
+ OPTmonth = {},
+ OPTnote = {},
+ OPTannote = {}
+}
+
+@Article{Ge03,
+ author = {Y Ge and S Dudoit and T P Speed},
+ title = {Resampling-based multiple testing for microarray data analysis},
+ journal = {Test},
+ year = {2003},
+ OPTkey = {},
+ volume = {12},
+ OPTnumber = {},
+ pages = {1-77},
+ OPTmonth = {},
+ OPTnote = {},
+ OPTannote = {}
+}
+
+
+
+@Article{Guindon03,
+ author = {S Guindon and O Gascuel},
+ title = {A simple, fast and accurate algorithm to estimate large phylogenies by maximum likelihood},
+ journal = {Syst biol},
+ year = {2003},
+ OPTkey = {},
+ volume = {52},
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+ pages = {696-704},
+ OPTmonth = {},
+ OPTnote = {},
+ OPTannote = {}
+}
+
+@Misc{treevolve,
+ OPTkey = {},
+ author = {N C Grassly and A Rambaut},
+ title = {Treevolve, version 1.32},
+ OPThowpublished = {},
+ OPTmonth = {},
+ year = {2000},
+ OPTnote = {available at \url{http://evolve.zoo.ox.ac.uk/software/Treevolve/main.html} },
+ OPTannote = {}
+}
+
+@Article{haviland,
+ author = {M B Haviland and A M Kessling and J Davignon and C F Sing},
+ title = {Cladistic analysis of the {A}polipoprotein \texttt{AI-CIII-AIV} gene cluster using a healthy {F}rench {C}anadian sample. {I}. {H}aploid analysis.},
+ journal = {Ann Hum Genet},
+ year = {1995},
+ OPTkey = {},
+ volume = {59},
+ OPTnumber = {},
+ pages = {211--231},
+ OPTmonth = {},
+ OPTnote = {},
+ OPTannote = {}
+}
+
+
+
+@Article{Heng00,
+ author = {C K Heng and P S Low},
+ title = {Cladistic analysis: its application in association studies of complex diseases},
+ journal = {Ann Acad Med Singapore},
+ year = {2000},
+ OPTkey = {},
+ volume = {29},
+ OPTnumber = {},
+ pages = {313--321},
+ OPTmonth = {},
+ OPTnote = {},
+ OPTannote = {}
+}
+
+
+
+@Article{Hugot01,
+ author = {J P Hugot and M Chamaillard and H Zouali and S Lesage and J P C\'ezard and J Belaiche and S Almer and C Tysk and C A O'Morain and M Gassull and V Binder and Y Finkel and A Cortot and R Modigliani and P Laurent-Puig and C Gower-Rousseau and J Macry and J F Colombel and M Sahbatou and G Thomas},
+ title = {Association of {N}{O}{D}2 leucin-rich repeat variants with susceptibility to {C}rohn's disease},
+ journal = {Nature},
+ year = {2001},
+ OPTkey = {},
+ volume = {411},
+ OPTnumber = {},
+ pages = {599--603},
+ OPTmonth = {},
+ OPTnote = {},
+ OPTannote = {}
+}
+
+
+
+@Article{Jannot03,
+ author = {A S Jannot and L Essioux and MG Reese and F Clerget-Darpoux},
+ title = {Improved use of {S}{N}{P} information to detect the role of genes},
+ journal = {Genet Epidemiol},
+ year = {2003},
+ OPTkey = {},
+ volume = {25},
+ OPTnumber = {},
+ pages = {158--67.},
+ OPTmonth = {},
+ OPTnote = {},
+ OPTannote = {}
+}
+
+% 100897350 (JID)
+@Article{Judson01,
+ Author={R Judson and J C Stephens},
+ Title={Notes from the SNP vs. haplotype front},
+ Journal={Pharmacogenomics},
+ Year={2001},
+ Volume={2},
+ Number={1},
+ Pages={7-10},
+ Month={Feb}
+}
+
+
+@Book{livre:Kaplan,
+ author = {J C Kaplan and M Delpech},
+ ALTeditor = {},
+ title = {Biologie moléculaire et médecine},
+ publisher = {Médecines-{S}ciences, {F}lammarion},
+ year = {1993},
+ OPTkey = {},
+ OPTvolume = {},
+ OPTnumber = {},
+ OPTseries = {},
+ OPTaddress = {},
+ edition = {2ème},
+ OPTmonth = {},
+ OPTnote = {},
+ OPTannote = {}
+}
+
+% 8411723 (JID)
+@Article{Kaplan01,
+ Author={N Kaplan and R Morris},
+ Title={Issues concerning association studies for fine mapping a susceptibility gene for a complex disease},
+ Journal={Genet Epidemiol},
+ Year={2001},
+ Volume={20},
+ Number={4},
+ Pages={432-457},
+ Month={May}
+}
+
+
+
+
+@Article{Keavney98,
+ author = {B Keavney and C A McKenzie and J M C Connell and C Julier and P J Ratcliffe and E Sobel and M Lathrop and M Farrall},
+ title = {Measured haplotype analysis of the angiotensin-{I} converting enzyme gene},
+ journal = {Hum Mol Genet},
+ year = {1998},
+ OPTkey = {},
+ volume = {7},
+ number = {11},
+ pages = {1745--1751},
+ OPTmonth = {},
+ OPTnote = {},
+ OPTannote = {}
+}
+
+@Article{kittles,
+ author = {R A Kittles and J C Long and A W Bergen and M Eggert and M Virkkunen and M Linnoila and D Goldman},
+ title = {Cladistic association analysis of {Y} chromosome effects on alcohol dependence and related personality traits},
+ journal = {Proc Natl Acad Sci},
+ year = {1999},
+ OPTkey = {},
+ volume = {96},
+ OPTnumber = {},
+ pages = {4204--4209},
+ OPTmonth = {},
+ OPTnote = {},
+ OPTannote = {}
+}
+
+
+
+
+@Article{Lazzeroni98,
+ author = {L C Lazzeroni},
+ title = {Linkage disequilibrium and gene mapping: an empirical least-square approach},
+ journal = {Am J Hum Genet},
+ year = {1998},
+ OPTkey = {},
+ volume = {62},
+ OPTnumber = {},
+ pages = {159-170},
+ OPTmonth = {},
+ OPTnote = {},
+ OPTannote = {}
+}
+
+@Article{crohn,
+ author = {S Lesage and H Zouali and J P Cezard and the EPWG-IBD group and J F Colombel and the EPIMAD group and J Belaiche and the GETAID group and S Almer and C Tysk and C O'Morain and M Gassull and V Binder and Y Finkek and R Modigliani and C Gower-Rousseau and J Macry and F Merlin and M Chamaillard and A S Jeannot and G Thomas and JP Hugot},
+ title = {{C}{A}{R}{D}15/{N}{O}{D}2 Mutational analysis and genotype-phenotype correlation in 612 patients with inflammatory bowel disease},
+ journal = {Am J Hum Genet},
+ year = {2002},
+ OPTkey = {},
+ volume = {70},
+ OPTnumber = {},
+ pages = {000--000},
+ OPTmonth = {},
+ OPTnote = {},
+ OPTannote = {}
+}
+
+@Article{LobosetTodd,
+ author = {E A Lobos and R D Todd},
+ title = {Cladistic analysis of disease association with tyroxine hydroxylase : {A}pplication to manic-depressive disease and alcoholism.},
+ journal = {Am J Med Genet},
+ year = {1997},
+ OPTkey = {},
+ volume = {74},
+ OPTnumber = {},
+ pages = {289--295},
+ OPTmonth = {},
+ OPTnote = {},
+ OPTannote = {}
+}
+
+
+
+
+@Article{Lobos98,
+ author = {EA Lobos and R D Todd},
+ title = {Association analysis in an evolutionary context: cladistic analysis of the {D}{R}{D}2 locus to test for association with alcoholism},
+ journal = {Am J Med Genet},
+ year = {1998},
+ OPTkey = {},
+ volume = {81},
+ OPTnumber = {},
+ pages = {411--419},
+ OPTmonth = {},
+ OPTnote = {},
+ OPTannote = {}
+}
+
+% 9518021 (JID)
+@Article{Long99,
+ Author={A D Long and C H Langley},
+ Title={The power of association studies to detect the contribution of candidate genetic loci to variation in complex traits},
+ Journal={Genome Res},
+ Year={1999},
+ Volume={9},
+ Number={8},
+ Pages={720-731},
+ Month={Aug}
+}
+
+@Article{McPeek99,
+ author = {M S McPeek and A Strahs},
+ title = {Assessment of linkage disequilibrium by the decay of haplotype sharing with application to fine-scale genetic mapping},
+ journal = {Am J Hum Genet},
+ year = {1999},
+ OPTkey = {},
+ volume = {65},
+ OPTnumber = {},
+ pages = {858-875},
+ OPTmonth = {},
+ OPTnote = {},
+ OPTannote = {}
+}
+
+@Book{livrestathiguet,
+ author = {A E Maxwell},
+ ALTeditor = {},
+ title = {Analysing Qualitative Data, Methuen's monographs on applied probability and statistics},
+ publisher = {General Editor Maurice Bartlett},
+ year = {1961},
+ OPTkey = {},
+ OPTvolume = {},
+ OPTnumber = {},
+ OPTseries = {},
+ OPTaddress = {},
+ OPTedition = {},
+ OPTmonth = {},
+ OPTnote = {},
+ OPTannote = {}
+}
+
+
+
+@Article{Nielsen99,
+ author = {D M Nielsen and M G Ehm and B S Weir},
+ title = {Detecting marker-disease association by testing for {H}ardy-{W}einberg disequilibrium at a marker locus},
+ journal = {Am J Hum Genet},
+ year = {1999},
+ OPTkey = {},
+ volume = {63},
+ OPTnumber = {},
+ pages = {1531--1540},
+ OPTmonth = {},
+ OPTnote = {},
+ OPTannote = {}
+}
+
+@Article{Nielsen04,
+ author = {D M Nielsen and M G Ehm and D V Zaykin and B S Weir},
+ title = {Effect of two- and three-locus linkage disequilibrium on the power to detect marker/phenotype association},
+ journal = {Genetics},
+ year = {2004},
+ OPTkey = {},
+ volume = {168},
+ OPTnumber = {},
+ pages = {1029--1040},
+ OPTmonth = {October},
+ OPTnote = {},
+ OPTannote = {}
+}
+
+
+@Article{Niu04,
+ author = {T Niu},
+ title = {Algorithms for inferring haplotypes},
+ journal = {Genet Epidemiol},
+ year = {2004},
+ OPTkey = {},
+ volume = {27},
+ OPTnumber = {},
+ OPTpages = {334--347},
+ OPTmonth = {},
+ OPTnote = {special issue: genetic epudemiology and haplotypes},
+ OPTannote = {}
+}
+
+@Article{Payami89,
+ author = {H Payami and S Joe and N R Farid and V Stenszky and S H Chan and P P B Yeo and J S Cheah and G Thomson},
+ title = {Relative predispositional effects ({R}{P}{E}s) of marker alleles with disease: {H}{L}{A}-{D}{R} alleles and {G}raves disease},
+ journal = {Am J Hum Genet},
+ year = {1989},
+ OPTkey = {},
+ volume = {45},
+ OPTnumber = {},
+ pages = {541--546},
+ OPTmonth = {},
+ OPTnote = {},
+ OPTannote = {}
+}
+
+@Article{Posada,
+ author = {D Posada and K A Crandall},
+ title = {Evaluation of methods for detecting recombination from {D}{N}{A} sequences: computer simulations},
+ journal = {P{N}{A}{S}},
+ year = {2001},
+ OPTkey = {},
+ volume = {98},
+ number = {24},
+ pages = {13757--13762},
+ OPTmonth = {},
+ OPTnote = {},
+ OPTannote = {}
+}
+
+
+
+@Article{Rannala01,
+ author = {B Rannala and J P Reeve},
+ title = {High-resolution multipoint linkage-disequilibrium mapping in the context of a human genome sequence},
+ journal = {Am J Hum Genet},
+ year = {2001},
+ OPTkey = {},
+ volume = {69},
+ OPTnumber = {},
+ pages = {159-178},
+ OPTmonth = {},
+ OPTnote = {},
+ OPTannote = {}
+}
+
+@Article{Roeder05,
+ author = {K Roeder and S-A Bacanu and V Sonpar and X Zhang and B
+Devlin},
+ title = {Analysis of single-locus tests to detect gene/disease
+associations},
+ journal = {Genet Epidemiol},
+ year = {2005},
+ OPTkey = {},
+ volume = {28},
+ OPTnumber = {},
+ pages = {207-219},
+ OPTmonth = {},
+ OPTnote = {},
+ OPTannote = {}
+}
+
+
+@Article{Roff89,
+ author = {D A Roff and P Bentzen},
+ title = {The statistical analysis of mitochondrial {D}{N}{A} polymorphisms: $\chi^2$ and the problem of small samples},
+ journal = {Mol. Biol. Evol.},
+ year = {1989},
+ OPTkey = {},
+ volume = {6},
+ OPTnumber = {},
+ pages = {539--545},
+ OPTmonth = {},
+ OPTnote = {},
+ OPTannote = {}
+}
+
+% 0374636 (JID)
+@Article{Schierup00,
+ Author={M H Schierup and J Hein},
+ Title={Consequences of recombination on traditional phylogenetic analysis},
+ Journal={Genetics},
+ Year={2000},
+ Volume={156},
+ OPTNumber={2},
+ Pages={879--891},
+ OPTMonth={Oct}
+}
+
+@Article{Schork00,
+ author = {N J Schork and D Fallin and S Lanchbury},
+ title = {Single nucleotide polymorphisms and the future of genetic epidemiology},
+ journal = {Clin Genet},
+ year = {2000},
+ OPTkey = {},
+ volume = {58},
+ OPTnumber = {},
+ pages = {250--264},
+ OPTmonth = {},
+ OPTnote = {},
+ OPTannote = {}
+}
+
+@Misc{SeattleSNPs,
+ OPTkey = {},
+ author = {SeattleSNPs},
+ title = {NHLBI Program for Genomic Applications, UW-FHCRC, Seattle, WA},
+ OPThowpublished = {},
+ OPTmonth = {},
+ OPTyear = {},
+ note = {(URL: http://pga.gs.washington.edu) [accessed october 2004]},
+ OPTannote = {}
+}
+
+@Article{Seltman01,
+ author = {H Seltman and K Roeder and B Devlin},
+ title = {Transmission/Disequilibrium test meets measured haplotype analysis: family-based association analysis guided by evolution of haplotypes},
+ journal = {Am J Hum Genet},
+ year = {2001},
+ OPTkey = {},
+ volume = {68},
+ OPTnumber = {},
+ pages = {1250--1263},
+ OPTmonth = {},
+ OPTnote = {},
+ OPTannote = {}
+}
+
+
+
+@Article{Seltman03,
+ author = {H Seltman and K Roeder and B Devlin},
+ title = {Evolutionary-based association using haplotype data},
+ journal = {Genet Epidemiol},
+ year = {2003},
+ OPTkey = {},
+ volume = {25},
+ OPTnumber = {},
+ pages = {48--58},
+ OPTmonth = {},
+ OPTnote = {},
+ OPTannote = {}
+}
+
+% 0370475 (JID)
+@Article{Stephens03,
+ Author={M Stephens and P Donnelly},
+ Title={A comparison of bayesian methods for haplotype reconstruction from population genotype data},
+ Journal={Am J Hum Genet},
+ Year={2003},
+ Volume={73},
+ Number={5},
+ Pages={1162-1169},
+ Month={Nov}
+}
+
+
+% 0370475 (JID)
+@Article{Stephens01,
+ author={M Stephens and N J Smith and P Donnelly},
+ title={A new statistical method for haplotype reconstruction from population data},
+ Journal={Am J Hum Genet},
+ Year={2001},
+ Volume={68},
+ Number={4},
+ Pages={978-989},
+ Month={Apr}
+}
+
+@Misc{Swofford02,
+ OPTkey = {},
+ author = {D L Swofford},
+ title = {\paup Phylogenetic Analysis Using Parcimony. Version 4.0b10.},
+ howpublished = {Sunderland, Massachusetts: Sinauer Associates},
+ OPTmonth = {},
+ year = {2002},
+ OPTnote = {Available at \url{http://paup.csit.fsu.edu/}},
+ OPTannote = {}
+}
+
+
+@Misc{Arlequin,
+ OPTkey = {},
+ author = {Schneider S, Roessli D, and Excoffier L},
+ title = {Arlequin: A software for population genetics data analysis. Ver 2.000},
+ OPThowpublished = {},
+ OPTmonth = {},
+ year = {2000},
+ note = {Available at \url{http://lgb.unige.ch/arlequin/software/}},
+ OPTannote = {}
+}
+
+
+
+@Article{Tahri03,
+ author = {N Tahri-Daizadeh and D A Tregouet and V Nicaud and N Manuel and F Cambien and L Tiret},
+ title = {Automated detection of informative combined effects in genetic association studies of complex traits},
+ journal = {Genome res},
+ year = {2003},
+ OPTkey = {},
+ volume = {13},
+ OPTnumber = {},
+ pages = {1952--1960},
+ OPTmonth = {},
+ OPTnote = {},
+ OPTannote = {}
+}
+
+@Article{Templeton1,
+ author = {A R Templeton and E Boerwinkle and C F Sing},
+ title = {A cladistic analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping. {I}. {B}asic theory and an analysis of alcohol dehydrogenase activity in {D}rosophila},
+ journal = {Genetics},
+ year = {1987},
+ OPTkey = {},
+ volume = {117},
+ OPTnumber = {},
+ pages = {343--351},
+ OPTmonth = {},
+ OPTnote = {},
+ OPTannote = {}
+}
+
+@Article{Templeton2,
+ author = {A R Templeton and C F Sing and A Kessling and S Humphries},
+ title = {A cladistic analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping. {II}. {T}he analysis of natural populations},
+ journal = {Genetics},
+ year = {1988},
+ OPTkey = {},
+ volume = {120},
+ OPTnumber = {},
+ pages = {1145--1154},
+ OPTmonth = {},
+ OPTnote = {},
+ OPTannote = {}
+}
+
+@Article{Templeton3,
+ author = {A R Templeton and K A Crandall and C F Sing},
+ title = {A cladistic analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping and {DNA} sequence data. {III}. {C}ladogram estimation},
+ journal = {Genetics},
+ year = {1992},
+ OPTkey = {},
+ volume = {132},
+ OPTnumber = {},
+ pages = {619--633},
+ OPTmonth = {},
+ OPTnote = {},
+ OPTannote = {}
+}
+@Article{Templeton4,
+ author = {A R Templeton and C F Sing},
+ title = {A cladistic analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping. {IV}. {N}ested analysis with cladogram uncertainty and recombination},
+ journal = {Genetics},
+ year = {1993},
+ OPTkey = {},
+ volume = {134},
+ OPTnumber = {},
+ pages = {659--669},
+ OPTmonth = {},
+ OPTnote = {},
+ OPTannote = {}
+}
+
+@Article{Templeton5,
+ author = {A R Templeton},
+ title = {A cladistic analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping or {DNA} sequencing. {V}. analysis of case/control sampling designs: {A}lzheimer's disease and the {A}polipoprotein {E} locus},
+ journal = {Genetics},
+ year = {1995},
+ OPTkey = {},
+ volume = {140},
+ OPTnumber = {},
+ pages = {403--409},
+ OPTmonth = {},
+ OPTnote = {},
+ OPTannote = {}
+}
+
+
+
+@Article{ApoEconsortium97,
+ author = {The APOE and {A}lzheimer {D}isease meta analysis consortium},
+ title = {Effects of age, gender and ethnicity on the association between apolipoprotein E genotype and Alzheimer disease},
+ journal = {J Am Med Assoc},
+ year = {1997},
+ OPTkey = {},
+ volume = {278},
+ OPTnumber = {},
+ pages = {1349--1356},
+ OPTmonth = {},
+ OPTnote = {},
+ OPTannote = {}
+}
+
+@Article{Thomas01,
+ author = {D C Thomas and I B Borecki and G Thomson and K Weiss and L Almasy and J Blangero and D Nielsen and J Terwilliger and D Zaykin and J MacCluer},
+ title = {Evolution of the simulated data problem},
+ journal = {Genet Epidemiol},
+ year = {2001},
+ OPTkey = {},
+ volume = {21 (Suppl.1},
+ OPTnumber = {},
+ pages = {S325--S331},
+ OPTmonth = {},
+ OPTnote = {},
+ OPTannote = {}
+}
+
+
+
+@Article{Tiret91,
+ author = {L Tiret and P Amouyel and R Rakotovao and F Cambien and P Ducimetière},
+ title = {Testing for association between disease and linked marker loci: a log-linear-mode analysis},
+ journal = {Am J Hum Genet},
+ year = {1991},
+ OPTkey = {},
+ volume = {48},
+ OPTnumber = {},
+ pages = {926--934},
+ OPTmonth = {},
+ OPTnote = {},
+ OPTannote = {}
+}
+
+
+
+@Article{Valdes97,
+ author = {A M Valdes and G Thomson},
+ title = {Detecting Disease-Predisposing Variants: The Haplotype Method.},
+ journal = {Am J Hum Genet},
+ year = {1997},
+ OPTkey = {},
+ volume = {60},
+ OPTnumber = {},
+ pages = {703-716},
+ OPTmonth = {},
+ OPTnote = {},
+ OPTannote = {}
+}
+
+@Article{Vermeire02,
+ author = {S Vermeire and G Wild and K Kocher and J Cousineau and L Dufresne and A Bitton and D Langelier and P Pare and G Lapointe and A Cohen and M J Daly and J Rioux },
+ title = {{CARD}15 genetic variation in a {Q}uebec population: prevalence, genotype-phenotype relationship, and haplotype structure},
+ journal = {Am J Hum Genet},
+ year = {2002},
+ OPTkey = {},
+ volume = {71},
+ OPTnumber = {},
+ pages = {74--83},
+ OPTmonth = {},
+ OPTnote = {},
+ OPTannote = {}
+}
+
+
+
+@Article{Wang03,
+ author = {G Q Wang and M Di Pietro and K Roeder and C K Heng and C H Bunker and R F Hamman and M I Kamboh },
+ title = {Cladistic analysis of human {A}polipoprotein {A}4 polymorphisms in relation to quantitative plasma lipid risk factors of coronary heart disease},
+ journal = {Ann of Hum Genet},
+ year = {2003},
+ OPTkey = {},
+ volume = {67},
+ OPTnumber = {},
+ pages = {107--124},
+ OPTmonth = {},
+ OPTnote = {},
+ OPTannote = {}
+}
+
+
+
+@Unpublished{YangPAML,
+ author = {Z Yang},
+ title = {Phylogenetic Analysis by Maximum Likelihood},
+ note = {http://abacus.gene.ucl.ac.uk/software/paml.html},
+ OPTkey = {},
+ OPTmonth = {},
+ OPTyear = {},
+ OPTannote = {}
+}
+
+@Article{Zaykin02,
+ author = {D V Zaykin and P H Westfall and S S Young and M A Karnoub and M J Wagner and M G Ehm},
+ title = {Testing association of statistically inferred haplotypes with discrete and continuous traits in samples of unrelated individuals},
+ journal = {Hum Hered},
+ year = {2002},
+ OPTkey = {},
+ volume = {53},
+ OPTnumber = {},
+ pages = {79--91},
+ OPTmonth = {},
+ OPTnote = {},
+ OPTannote = {}
+}
+
+% 0370475 (JID)
+@Article{Zhang02,
+ Author="K Zhang and P Calabrese and M Nordborg and F Sun",
+ Title="{Haplotype block structure and its applications to association studies: power and study designs}",
+ Journal="Am J Hum Genet",
+ Year="2002",
+ Volume="71",
+ Number="6",
+ Pages="1386-1394",
+ Month="Dec"
+}
+
+@Article{Zhao00,
+ author = {J H Zhao and D Curtis and P C Sham},
+ title = {Model-free analysis and permutation tests for allelic associations},
+ journal = {Hum Hered},
+ year = {2000},
+ OPTkey = {},
+ volume = {50},
+ OPTnumber = {},
+ pages = {133--139},
+ OPTmonth = {},
+ OPTnote = {},
+ OPTannote = {}
+}
+
+
+@Article{Zhao03,
+ author = {H Zhao and R Pfeiffer and M H Gail},
+ title = {Haplotype analysis in population genetics and association studies},
+ journal = {Pharmacogenomics},
+ year = {2003},
+ OPTkey = {},
+ volume = {4},
+ number = {2},
+ pages = {171--178},
+ OPTmonth = {},
+ OPTnote = {},
+ OPTannote = {}
+}
+
+@Article{Zhu01,
+ author = {X Zhu and R S Cooper and G Chen and A Luke and R Eltson},
+ title = {Localization of the {Q}1 mutation by cladistic analysis},
+ journal = {Genet Epidemiol},
+ year = {2001},
+ OPTkey = {},
+ volume = {21 (Suppl.1)},
+ OPTnumber = {},
+ pages = {S594--S599},
+ OPTmonth = {},
+ OPTnote = {},
+ OPTannote = {}
+}
+
diff --git a/trunk/MANIFEST b/trunk/MANIFEST
new file mode 100644
index 0000000000000000000000000000000000000000..1a2789e42a9a74a7af78de1e8ceb02973e903f59
--- /dev/null
+++ b/trunk/MANIFEST
@@ -0,0 +1,213 @@
+altree
+altree-add-S
+altree-convert
+ALTree/Base.pm
+ALTree/Chi2.pm
+ALTree/Foret.pm
+ALTree/Import.pm
+ALTree/Input.pm
+ALTree/Node.pm
+ALTree/Sens.pm
+ALTree/Site.pm
+ALTree/SiteCollection.pm
+ALTree/SitePerForet.pm
+ALTree/SitePerTree.pm
+ALTree/SiteSens.pm
+ALTree/SiteSensPerForet.pm
+ALTree/SiteSensPerTree.pm
+ALTree/Tree.pm
+ALTree/Utils.pm
+Changes
+CUtils/c_sources/chisq.c
+CUtils/c_sources/chisq.h
+CUtils/c_sources/double_permutation.c
+CUtils/c_sources/double_permutation.h
+CUtils/c_sources/fisher.c
+CUtils/c_sources/fisher.h
+CUtils/c_sources/Makefile.PL
+CUtils/c_sources/z.c
+CUtils/c_sources/z.h
+CUtils/const-c.inc
+CUtils/const-xs.inc
+CUtils/CUtils.xs
+CUtils/fallback/const-c.inc
+CUtils/fallback/const-xs.inc
+CUtils/lib/ALTree/CUtils.pm
+CUtils/Makefile.PL
+CUtils/ppport.h
+CUtils/t/ALTree-CUtils.t
+CUtils/t/double_permutation.t
+Documentation/fig/anc_outg.fig
+Documentation/fig/association_paml.fig
+Documentation/fig/association_paup.fig
+Documentation/fig/association_phylip.fig
+Documentation/fig/create_file_paup.fig
+Documentation/fig/create_file_phy.fig
+Documentation/fig/localisation_paml.fig
+Documentation/fig/localisation_paup.fig
+Documentation/fig/option_b.fig
+Documentation/fig/option_b.subfig
+Documentation/fig/overview.fig
+Documentation/Makefile
+Documentation/manual.tex
+Documentation/stage.bib
+Makefile.PL
+MANIFEST This list of files
+META.yml
+README
+t/ALTree.t
+test/create_file/paup_file/caco.phase
+test/create_file/paup_file/caco.phase.out
+test/create_file/paup_file/caco.phase.out_freqs
+test/create_file/paup_file/caco.phase.out_monitor
+test/create_file/paup_file/caco.phase.out_pairs
+test/create_file/paup_file/caco.phase.out_recom
+test/create_file/paup_file/caco.prepaup
+test/create_file/paup_file/create_file
+test/create_file/paup_file/nb_cas_control.txt
+test/create_file/phy-paml_file/create_file
+test/create_file/phy-paml_file/fam19_0
+test/create_file/phy-paml_file/fam19_0.gm
+test/create_file/phy-paml_file/fam19_0_H1_HAPLOTYPES
+test/create_file/phy-paml_file/fam19_0_LDmeasuresCASES.xt
+test/create_file/phy-paml_file/fam19_0_LDmeasuresCONTROLS.xt
+test/create_file/phy-paml_file/nb_cas_control.txt
+test/create_file/phy-paml_file/NUM
+test/create_file/phy-paml_file/trio.fmh
+test/create_file/phy-paml_file/trio.prephy
+test/paml/unrooted_absent/association/1_trio_ML.asso
+test/paml/unrooted_absent/association/2base.t
+test/paml/unrooted_absent/association/baseml.ctl
+test/paml/unrooted_absent/association/lnf
+test/paml/unrooted_absent/association/mlb
+test/paml/unrooted_absent/association/nb_cas_control.txt
+test/paml/unrooted_absent/association/rst
+test/paml/unrooted_absent/association/rst1
+test/paml/unrooted_absent/association/rub
+test/paml/unrooted_absent/association/run_altree
+test/paml/unrooted_absent/association/trio2.phy
+test/paml/unrooted_absent/association/trio2.phy_phyml_tree.txt
+test/paml/unrooted_present/association/1_trio_ML.asso
+test/paml/unrooted_present/association/2base.t
+test/paml/unrooted_present/association/baseml.ctl
+test/paml/unrooted_present/association/lnf
+test/paml/unrooted_present/association/mlb
+test/paml/unrooted_present/association/nb_cas_control.txt
+test/paml/unrooted_present/association/rst
+test/paml/unrooted_present/association/rst1
+test/paml/unrooted_present/association/rub
+test/paml/unrooted_present/association/run_altree
+test/paml/unrooted_present/association/trio2.phy
+test/paml/unrooted_present/association/trio2.phy_phyml_tree.txt
+test/paml/unrooted_present/localisation/2base.t
+test/paml/unrooted_present/localisation/baseml.ctl
+test/paml/unrooted_present/localisation/et_trio2.phy
+test/paml/unrooted_present/localisation/lnf
+test/paml/unrooted_present/localisation/mlb
+test/paml/unrooted_present/localisation/nb_cas_controls.txt
+test/paml/unrooted_present/localisation/rst
+test/paml/unrooted_present/localisation/rst1
+test/paml/unrooted_present/localisation/rub
+test/paml/unrooted_present/localisation/run-prog
+test/paml/unrooted_present/localisation/trio2.loc
+test/paml/unrooted_present/localisation/trio2.phy
+test/paml/unrooted_present/localisation/trio2.phy_phyml_tree.txt
+test/paup/ancestor_absent/association/1_caco.asso
+test/paup/ancestor_absent/association/caco.paup
+test/paup/ancestor_absent/association/nb_cas_control.txt
+test/paup/ancestor_absent/association/run_altree
+test/paup/ancestor_absent/association/test.res.log
+test/paup/ancestor_absent/association/test.tree
+test/paup/ancestor_absent/localisation/caco.loc
+test/paup/ancestor_absent/localisation/caco.paup
+test/paup/ancestor_absent/localisation/et_caco.paup
+test/paup/ancestor_absent/localisation/nb_cas_control.txt
+test/paup/ancestor_absent/localisation/run-prog
+test/paup/ancestor_absent/localisation/test.res.log
+test/paup/ancestor_absent/localisation/test.tree
+test/paup/ancestor_present/association/1_caco.asso
+test/paup/ancestor_present/association/caco.paup
+test/paup/ancestor_present/association/nb_cas_control.txt
+test/paup/ancestor_present/association/run_altree
+test/paup/ancestor_present/association/test.res.log
+test/paup/ancestor_present/association/test.tree
+test/paup/ancestor_present/localisation/caco.loc
+test/paup/ancestor_present/localisation/caco.paup
+test/paup/ancestor_present/localisation/et_caco.paup
+test/paup/ancestor_present/localisation/nb_cas_control.txt
+test/paup/ancestor_present/localisation/run-prog
+test/paup/ancestor_present/localisation/test.res.log
+test/paup/ancestor_present/localisation/test.tree
+test/paup/outgr_absent/association/1_caco.asso
+test/paup/outgr_absent/association/caco.paup
+test/paup/outgr_absent/association/nb_cas_control.txt
+test/paup/outgr_absent/association/run_altree
+test/paup/outgr_absent/association/test.res.log
+test/paup/outgr_absent/association/test.tree
+test/paup/outgr_absent/localisation/caco.paup
+test/paup/outgr_absent/localisation/nb_cas_control.txt
+test/paup/outgr_absent/localisation/run-prog
+test/paup/outgr_present/association/1_caco.asso
+test/paup/outgr_present/association/caco.paup
+test/paup/outgr_present/association/nb_cas_control.txt
+test/paup/outgr_present/association/run_altree
+test/paup/outgr_present/association/test.res.log
+test/paup/outgr_present/association/test.tree
+test/paup/outgr_present/localisation/caco.loc
+test/paup/outgr_present/localisation/caco.paup
+test/paup/outgr_present/localisation/et_caco.paup
+test/paup/outgr_present/localisation/nb_cas_control.txt
+test/paup/outgr_present/localisation/run-prog
+test/paup/outgr_present/localisation/test.res.log
+test/paup/outgr_present/localisation/test.tree
+test/paup/unrooted_absent/association/1_caco.asso
+test/paup/unrooted_absent/association/caco.paup
+test/paup/unrooted_absent/association/nb_cas_control.txt
+test/paup/unrooted_absent/association/run_altree
+test/paup/unrooted_absent/association/test.res.log
+test/paup/unrooted_absent/association/test.tree
+test/paup/unrooted_absent/localisation/caco.loc
+test/paup/unrooted_absent/localisation/caco.paup
+test/paup/unrooted_absent/localisation/et_caco.paup
+test/paup/unrooted_absent/localisation/nb_cas_control.txt
+test/paup/unrooted_absent/localisation/run-prog
+test/paup/unrooted_absent/localisation/test.res.log
+test/paup/unrooted_absent/localisation/test.tree
+test/paup/unrooted_present/association/1_caco.asso
+test/paup/unrooted_present/association/caco.paup
+test/paup/unrooted_present/association/nb_cas_control.txt
+test/paup/unrooted_present/association/run_altree
+test/paup/unrooted_present/association/test.res.log
+test/paup/unrooted_present/association/test.tree
+test/paup/unrooted_present/localisation/caco.loc
+test/paup/unrooted_present/localisation/caco.paup
+test/paup/unrooted_present/localisation/et_caco.paup
+test/paup/unrooted_present/localisation/nb_cas_control.txt
+test/paup/unrooted_present/localisation/run-prog
+test/paup/unrooted_present/localisation/test.res.log
+test/paup/unrooted_present/localisation/test.tree
+test/phylip/ancestor_absent/association/1_trio_phy.asso
+test/phylip/ancestor_absent/association/ancestors
+test/phylip/ancestor_absent/association/nb_cas_controls.txt
+test/phylip/ancestor_absent/association/outfile
+test/phylip/ancestor_absent/association/outtree
+test/phylip/ancestor_absent/association/run_altree
+test/phylip/ancestor_absent/association/trio.phy
+test/phylip/ancestor_present/association/1_trio_phy.asso
+test/phylip/ancestor_present/association/ancestors
+test/phylip/ancestor_present/association/nb_cas_controls.txt
+test/phylip/ancestor_present/association/outfile
+test/phylip/ancestor_present/association/outtree
+test/phylip/ancestor_present/association/run_altree
+test/phylip/ancestor_present/association/trio.phy
+test/phylip/outgroup_absent/association/1_trio_phy.asso
+test/phylip/outgroup_absent/association/nb_cas_controls.txt
+test/phylip/outgroup_absent/association/outfile
+test/phylip/outgroup_absent/association/outtree
+test/phylip/outgroup_absent/association/run_altree
+test/phylip/outgroup_absent/association/trio.phy
+test/phylip/outgroup_present/association/nb_cas_controls.txt
+test/phylip/outgroup_present/association/outfile
+test/phylip/outgroup_present/association/outtree
+test/phylip/outgroup_present/association/run_altree
+test/phylip/outgroup_present/association/trio.phy
diff --git a/trunk/MANIFEST.SKIP b/trunk/MANIFEST.SKIP
new file mode 100644
index 0000000000000000000000000000000000000000..81bff9f61026ddc616148212e5fa381525d2434b
--- /dev/null
+++ b/trunk/MANIFEST.SKIP
@@ -0,0 +1,32 @@
+# Version control files and dirs.
+\bRCS\b
+\bCVS\b
+,v$
+.cvsignore$
+^\.svn\b
+/\.svn\b
+
+# Makemaker generated files and dirs.
+^MANIFEST\.
+^Makefile$
+^CUtils.*/Makefile$
+^blib/
+^MakeMaker-\d
+
+# Temp, old and emacs backup files.
+~$
+\.old$
+^#.*#$
+^\.#
+
+# Distributions
+^altree-.*\.tar\.gz$
+
+# Documentation
+^Documentation/fig/.*\.pdftex(_t)?$
+^Documentation/fig/.*\.pstex(_t)?$
+^Documentation/fig/.*\.subfig\.mk$
+^Documentation/fig/.*_[0-9]+\.fig$
+
+# Other
+.*\.o$
diff --git a/trunk/Makefile.PL b/trunk/Makefile.PL
new file mode 100644
index 0000000000000000000000000000000000000000..7b5d5925537f94f9dcc61b9dc60cfa7e1ed3fc81
--- /dev/null
+++ b/trunk/Makefile.PL
@@ -0,0 +1,15 @@
+use 5.008004;
+use ExtUtils::MakeMaker;
+# See lib/ExtUtils/MakeMaker.pm for details of how to influence
+# the contents of the Makefile that is written.
+WriteMakefile(
+ NAME => 'altree',
+ PMLIBDIRS => [ 'ALTree' ],
+ DIR => [ 'CUtils' ],
+ VERSION => '1.0.0',
+ PREREQ_PM => {}, # e.g., Module::Name => 1.1
+ ($] >= 5.005 ? ## Add these new keywords supported since 5.005
+ (ABSTRACT_FROM => 'altree', # retrieve abstract from module
+ AUTHOR => 'Claire Bardel <bardel@vjf.inserm.fr>') : ()),
+ EXE_FILES => [qw (altree altree-add-S altree-convert)],
+);
diff --git a/trunk/README b/trunk/README
new file mode 100644
index 0000000000000000000000000000000000000000..54ec5a60da8e0704db93cef8ce3c1a3da1f8dfce
--- /dev/null
+++ b/trunk/README
@@ -0,0 +1,49 @@
+ALTree version 0.92
+===================
+
+The README is used to introduce the module and provide instructions on
+how to install the module, any machine dependencies it may have (for
+example C compilers and installed libraries) and any other information
+that should be provided before the module is installed.
+
+A README file is required for CPAN modules since CPAN extracts the
+README file from a module distribution so that people browsing the
+archive can use it get an idea of the modules uses. It is usually a
+good idea to provide version information here so that people can
+decide whether fixes for the module are worth downloading.
+
+INSTALLATION
+
+To install this module type the following:
+
+ perl Makefile.PL
+ make
+ make test
+ make install
+
+If you prefer to install it in your home directory,
+then type the following:
+ perl Makefile.PL PREFIX=~
+ make
+ make test
+ make install
+In this case, do not forget to add ~/bin in your PATH and
+~/lib/perl/"perl_version"/ in PERL5LIB if they are not already present.
+
+DEPENDENCIES
+
+This module requires these other modules and libraries:
+
+ blah blah blah
+
+COPYRIGHT AND LICENCE
+
+Put the correct copyright and licence information here.
+
+Copyright (C) 2005 by Claire Bardel
+
+This library is free software; you can redistribute it and/or modify
+it under the same terms as Perl itself, either Perl version 5.8.4 or,
+at your option, any later version of Perl 5 you may have available.
+
+
diff --git a/trunk/altree b/trunk/altree
new file mode 100755
index 0000000000000000000000000000000000000000..b081b5f8df2056101cb6e94bfc8823a9ab70de58
--- /dev/null
+++ b/trunk/altree
@@ -0,0 +1,1742 @@
+#! /usr/bin/perl
+
+use strict;
+use diagnostics;
+use warnings;
+use Getopt::Long qw(:config permute);
+use Pod::Usage;
+
+use Data::Dumper;
+
+srand(654321);
+
+our $VERSION;
+$VERSION = sprintf "0.%03d", q$Revision$ =~ /(\d+)/g;
+
+# Positionner la variable PERL5LIB si besoin
+
+# PERL5LIB est une variable comme PATH, sauf qu'elle ne sert pas à
+# trouver les programmes, mais plutôt les modules de perl
+# En bash :
+# export PERL5LIB=/chemin/vers/modules/perl:/chemin/vers/autres/modules
+# En tcsh :
+# setenv PERL5LIB /chemin/vers/modules/perl:/chemin/vers/autres/modules
+
+# Si les modules sont installés dans les emplacements standard de
+# perl, c'est inutile
+
+use ALTree::Chi2 ();
+use ALTree::Import;
+use ALTree::Utils qw(erreur);
+use ALTree::Input qw(PrepareTree);
+#use Newchi2treeUtils;
+
+###########################################
+######## GLOBAL VARIABLES #########
+###########################################
+
+# Variable $nodes
+# Ref on Hash of ('id' => Node)
+# my $nodes;
+
+# Variable $sites
+# Ref on Hash of ('site_nb' -> Site)
+# my $sites;
+
+###########################################
+######## CONSTANTES #########
+###########################################
+
+package SplitMode;
+use constant NOSPLIT => 0;
+use constant CHI2SPLIT => 1;
+
+package CoEvo;
+use constant SIMPLE => 0;
+use constant DOUBLE => 1;
+
+package RootMeth;
+use constant OUTG => 0;
+use constant ANC => 1;
+
+package SignUtil;
+use constant NO => 0;
+use constant YES => 1;
+
+package Seuil;
+use constant SAMPLESIZE => 5;
+use constant P_VAL_CHI2 => 0.01;
+use constant P_VAL_TESTPROP => 0.01;
+use constant ONLY_CASE => 3;
+
+package main;
+
+###########################################
+######### BUILDING OF THE TREE ##########
+###########################################
+
+
+# Outgroup is not removed from the hash nodes.
+# It is only removed from the list of children of it's father
+sub RemoveOutgroup
+{
+ my $tree=shift;
+ my $outgroup=shift;
+
+ my($father_outgr)=$outgroup->GetFather();
+ $father_outgr->DeleteChild($outgroup);
+}
+
+# Outgroup is put again in the list of children of it's father
+sub AddOutgroup
+{
+ my($outgroup)=shift;
+ my($father_outgr)=$outgroup->GetFather();
+ $father_outgr->AddChild($outgroup);
+}
+
+sub NbFils
+{
+ my($node)=shift;
+ return $node->NbChildren();
+}
+
+sub Name
+{
+ my($node)=shift;
+ return $node->Name();
+}
+
+###########################################################
+####### CHECK FUNCTIONS ###################################
+###########################################################
+
+# Do some check on the tree
+# Return true (1) if the outgroup need to be removed
+sub CheckCorrespondance
+{
+ my($tree)=shift;
+ my($correspondance)=shift;
+ my($name_corres)=shift;
+ my($outgroup)=shift;
+ my($ret)=0;
+
+#Check if all the leaf are defined in $correspondance
+ foreach my $node ($tree->GetNodesList()) {
+ my($nb_fils)=$node->NbChildren();
+ if ($nb_fils == 0) { # We are on a leaf
+ if (not defined $correspondance->{$node->GetId()}) {
+ if (defined($outgroup) && ($node->GetId() eq $outgroup)) {
+ $ret=1;
+ } else {
+ #$node->SetCase(0);
+ #$node->SetControl(0);
+ if (not defined($outgroup)) {
+ erreur("The leaf '". $node->Name().
+ "' is not in the input file ".
+ "'$name_corres'.\nPerhaps this is the".
+ " outgroup and you need to remove it (option".
+ " --remove-outgroup).\n".
+ "Please, check you data\n", 0);
+ } else {
+ erreur("The leaf '". $node->Name().
+ "' is not in the input file ".
+ "'$name_corres'.\nPlease, check you data\n", 0);
+ }
+ }
+ }
+ }
+
+ }
+
+ # Check if all the entries for correspondance whose name begin by
+ # H are leafs in the tree
+
+ foreach my $clef (keys %{$correspondance}) {
+ if (not $tree->HasNodeIndex($clef)) {
+ erreur("Node '$clef' found in '$name_corres' does".
+ " not exist in the tree. You have probably".
+ " forgot to remove the haplotype corresponding".
+ " to the ancestor.\nPlease, check the input file".
+ " '$name_corres'.\n", 0);
+ }
+ if ($tree->GetRoot()->Name() eq $clef) {
+ next;
+ } else {
+ my($nb_fils)=$tree->GetNode($clef)->NbChildren();
+
+ if ($nb_fils!=0) {
+ erreur("'$clef' present in $name_corres is a".
+ " internal node (not a leaf) in the tree\n".
+ "Please, check your data");
+ }
+ }
+ }
+ return $ret;
+}
+
+##################################################
+######## PARCOURS ET REMPLISSAGE ARBRE #########
+##################################################
+
+sub ClassicalChi2
+{
+ my($tabnodes_a_traiter)=shift;
+ my($sum_case, $sum_control, $node, $sum_total);
+ my($chi2)=0;
+ my($chi2invalid)=0;
+ foreach $node (@{$tabnodes_a_traiter}) {
+ if (not defined($node->{"control"})) {
+ die "arg for ".$node->Name();
+ }
+ $sum_control+=$node->{"control"};
+ $sum_case+=$node->{"case"};
+ }
+ $sum_total=$sum_control+$sum_case;
+ my($ddl)=scalar(@{$tabnodes_a_traiter})-1; # Nb branches -1
+
+ my($error)=0;
+ if ($ddl==0) { # 1 seul clade
+ $error=4;
+ #Faire un warning si on n'est pas à la racine?
+ } else {
+ if ($sum_case==0) {
+ $error=1;
+ } elsif ($sum_control==0) {
+ $error=2;
+ } else { # Calcul du chi2
+ my($m, $c, $t_m, $t_c);
+ foreach $node (@{$tabnodes_a_traiter}) {
+ $m=$node->{"case"};
+ $c=$node->{"control"};
+ if ($m==0 && $c==0) {
+ my($name)=$node->Name();
+ erreur("no case and no control for node $name\n", 1);
+ }
+ $t_m=(($m+$c)*$sum_case)/$sum_total;
+ #print STDERR $node->Name() ," m=$m, t_m=$t_m, c=$c\n";
+ $chi2 += (($m-$t_m)*($m-$t_m))/$t_m;
+
+ $t_c=(($m+$c)*$sum_control)/$sum_total;
+ $chi2 += (($c-$t_c)*($c-$t_c))/$t_c;
+ if (($t_m <= Seuil::SAMPLESIZE) ||
+ ($t_c <= Seuil::SAMPLESIZE)) {
+ $chi2invalid++;
+ }
+ }
+ }
+ }
+ return ($chi2, $chi2invalid, $error, $sum_control, $sum_case);
+}
+
+sub CalculChi2
+{
+ my($tabnodes_a_traiter)=shift;
+ my($ddl)=shift;
+ my($test_results)=shift;
+ my($sign_util)=shift;
+ my($chi2, $chi2invalid, $error, $sum_control, $sum_case);
+ my($significatif);
+ my($p_value);
+
+ ($chi2, $chi2invalid, $error, $sum_control, $sum_case)=
+ ClassicalChi2($tabnodes_a_traiter);
+ if ($error != 0) {
+ # TODO: A vérifier : est-ce OK de mettre $significatif à 0
+ # la valeur est utilisée au retour de cette fonction
+# $significatif=0;
+ if ($error == 1) {
+ $test_results->{"texte"}=
+ "No cases, ($sum_control controls)";
+ if ($sign_util==SignUtil::YES) {
+ $significatif=ALTree::Chi2::NON_SIGNIFICATIF;
+ }
+ } elsif ($error == 2) {
+ $test_results->{"texte"}="No controls: only $sum_case cases";
+ if ($sum_case>=Seuil::ONLY_CASE) {
+ if ($sign_util==SignUtil::YES) {
+ $significatif=1;
+ $test_results->{"sign"}=ALTree::Chi2::SIGNIFICATIF;
+ }
+ } else {
+ if ($sign_util==SignUtil::YES) {
+ $significatif=0;
+ $test_results->{"sign"}=ALTree::Chi2::NON_SIGNIFICATIF;
+ }
+ }
+ #$test_results->{"sign"}=ALTree::Chi2::NON_SIGNIFICATIF;
+ } elsif ($error == 4) {
+ $test_results->{"texte"}="Only one clade";
+ if ($sign_util==SignUtil::YES) {
+ $significatif=0;
+ $test_results->{"sign"}=ALTree::Chi2::NON_SIGNIFICATIF;
+ }
+ # Manque plein de trucs par rapport à la fonction dans chi2tree...
+ } else {
+ die "invalid error $error\n";
+ }
+ } else {
+ if ($chi2invalid !=0) {
+ $test_results->{"warning"}="Small sample size correction used";
+ # J'ai pas compté dans combien de branches...
+ if ($ddl == 1) {
+ $p_value=ALTree::CUtils::bilateral($tabnodes_a_traiter->[0]->{"case"},
+ $tabnodes_a_traiter->[0]->{"control"},
+ $tabnodes_a_traiter->[1]->{"case"},
+ $tabnodes_a_traiter->[1]->{"control"});
+ if ($sign_util==SignUtil::YES) {
+ $significatif=ALTree::Chi2::chi2_fisher_significatif($p_value);
+ }
+ } else {
+ my(@clades, $node);
+ foreach $node (@{$tabnodes_a_traiter}) {
+ push @clades, ($node->{"case"} + $node->{"control"});
+ # remplit un tableau contenant les effectifs
+ # totaux des différents clades à utiliser dans le
+ # réechantillonnage
+ }
+ ($p_value)= ALTree::Chi2::reech_chi2($sum_case, $sum_control,
+ $ddl+1, $chi2, \@clades);
+ $test_results->{"warning"}.=" ($p_value)";
+ if ($sign_util==SignUtil::YES) {
+ $significatif= ALTree::Chi2::reech_significatif ($p_value);
+ if ($significatif !=
+ ALTree::Chi2::chi2_significatif($ddl, $chi2)) {
+ $test_results->{"warning"}.=" Result has changed !";
+ }
+ }
+ }
+ } else {
+ if ($sign_util==SignUtil::YES) {
+ $significatif=ALTree::Chi2::chi2_significatif($ddl, $chi2);
+ }
+ #my $p=`pochisq $chi2 $ddl`+0; # Verif que les 2 appellent
+ #bien la même chose!
+ $p_value=ALTree::CUtils::pochisq($chi2,$ddl);
+ #if ($p != $p_value) {
+ #print STDERR "pochisq: $p != $p_value !\n";
+ #}
+ }
+ if ($sign_util==SignUtil::YES) {
+ if ($significatif) {
+ $test_results->{"sign"}=ALTree::Chi2::SIGNIFICATIF;
+ #$test_results->{"texte"}.="significatif";
+ } else {
+ $test_results->{"sign"}=ALTree::Chi2::NON_SIGNIFICATIF;
+ # $test_results->{"texte"}.="non significatif";
+ }
+ }
+ $test_results->{"chi2"}=$chi2;
+ $test_results->{"p_val"}=$p_value;
+ #$test_results->{"texte"}.=" [p_value_chi2=$p_value]";
+ }
+ if ($sign_util==SignUtil::YES) {
+ return ($significatif, $p_value);
+ } else {
+ return ($p_value);
+ }
+}
+
+sub parcours_nosplit_chi2split
+{
+ my($tabnodes_a_traiter)=shift;
+ my($prolonge)=shift;
+ my($splitmode)=shift;
+ my($node_ecriture)=shift;
+ my($sign_util)=shift; # vaut 1 si on a besoin de la significativité, 0 sinon
+ my($node, $child, @tab_noeuds_suivants);
+ my($val)=0;
+ my($test, $p_val);
+ my($test_results);
+
+ $test_results->{"ddl"}=scalar(@{$tabnodes_a_traiter})-1; # Nb branches -1
+ if ($sign_util==SignUtil::YES) {
+ ($test, $p_val)=CalculChi2($tabnodes_a_traiter, $test_results->{"ddl"}, $test_results, SignUtil::YES );
+ } elsif ($sign_util==SignUtil::NO) {
+ ($p_val)=CalculChi2($tabnodes_a_traiter, $test_results->{"ddl"}, $test_results, SignUtil::NO);
+ }
+ $test_results->{"node_teste"}=$node_ecriture;
+ push (@{$node_ecriture->{"res_test"}}, $test_results);
+ $test_results->{"level"}=scalar(@{$node_ecriture->{"res_test"}})-1;
+
+ if ($sign_util== SignUtil::YES && $test==1 && $splitmode == SplitMode::CHI2SPLIT) { # sign et que on on est en chi2split
+ foreach $node (@{$tabnodes_a_traiter}) {
+ if (NbFils($node) != 0) {
+ my @children=$node->GetChildrenList();
+ parcours_nosplit_chi2split(\@children,
+ $prolonge, $splitmode, $node);
+ }
+ }
+ } elsif ($sign_util== SignUtil::NO || $test==0 || $splitmode == SplitMode::NOSPLIT) { # ou alors on est en nosplit
+ foreach $node (@{$tabnodes_a_traiter}) {
+ if (NbFils($node) != 0) {
+ $val=1;
+ foreach $child ($node->GetChildrenList()) {
+ push (@tab_noeuds_suivants, $child);
+ }
+ } else {
+ if ($prolonge == 1) {
+ push (@tab_noeuds_suivants, $node);
+ }
+ }
+ }
+ if ($val==1) {
+ parcours_nosplit_chi2split(\@tab_noeuds_suivants,
+ $prolonge, $splitmode, $node_ecriture, $sign_util);
+ } else {
+ return;
+ }
+ }
+}
+
+sub FillCaseControl
+{
+ my($present_node)=shift;
+ my($correspondance)=shift;
+ if ($present_node->NbChildren()==0) {
+ my($id);
+ $id=$present_node->{"id"};
+ if (not defined $present_node->{"case"}) {# car sinon, pb pour H000
+ $present_node->{"case"} = $correspondance->{$id}->{"case"};
+ }
+ if (not defined $present_node->{"control"}) {
+ $present_node->{"control"} = $correspondance->{$id}->{"control"};
+ }
+ #print $present_node->{"id"}, " m:", $present_node->{"case"}, " c:", $present_node->{"control"}, " ";
+ } else {
+ my($child);
+ # print $present_node->{"id"}, " "; #123456
+ for $child ($present_node->GetChildrenList()) {
+ FillCaseControl($child, $correspondance);
+ $present_node->{"case"}+=$child->{"case"};
+ $present_node->{"control"}+=$child->{"control"};
+ }
+ #print $present_node->{"id"}, " m:", $present_node->{"case"}," c:", $present_node->{"control"}," ";
+ }
+
+}
+
+
+sub FillLevel
+{
+ my($present_node)=shift;
+ my($level)=shift;
+ my($child);
+
+ $present_node->{"level"}=$level;
+ $level+=1;
+ foreach $child (@{$present_node->{"children"}}) {
+ FillLevel($child, $level);
+ }
+}
+
+sub FillHeight
+{
+ my($present_node)=shift;
+ my($height)=shift;
+ my($child);
+ $height+=1;
+ foreach $child (@{$present_node->{"children"}}) {
+ FillHeight($child, $height);
+ }
+ $present_node->{"height"}=$height;
+}
+
+
+##################################################
+######## AFFICHAGE DE L' ARBRE ##################
+##################################################
+sub LongueurTrait
+{
+ my($node)=shift;
+ my($level)=shift;
+ return(" "x$level."------");
+}
+
+sub AffichageParLevel # Ne prend pas une fonction pour l'affichage
+{
+ my ($racine)=shift;
+ my ($len)=6;
+ my $AffichageInterne;
+
+ $AffichageInterne= sub
+ {
+ my ($node) = shift;
+ my ($start) = shift; # début commun à tout ce noeud (et descendants)
+ my ($up) = shift; # quand on est au dessus de ce noeud
+ my ($here) =shift; # quand on affiche ce noeud
+ my ($down) =shift; # quand on est au dessous de ce noeud
+
+ my($nb_fils)=NbFils($node);
+ my($i);
+
+ if ($nb_fils >= 1) {
+ $AffichageInterne->($node->GetChild(0),
+ $start.$up.(" "x$len), " ", "/", "|");
+ }
+ for ($i=1; $i<$nb_fils/2; $i++) {
+ $AffichageInterne->($node->GetChild($i),
+ $start.$up.(" "x$len), "|", "|", "|");
+ }
+ print $start.$here.("-"x$len)."* ", Name($node), "\n";
+ for ( ;$i < $nb_fils-1; $i++) {
+ $AffichageInterne->($node->GetChild($i),
+ $start.$down.(" "x$len), "|", "|", " ");
+ }
+ if ($nb_fils > 1) {
+ $AffichageInterne->($node->GetChild($nb_fils-1),
+ $start.$down.(" "x$len), "|", "\\", " ");
+ }
+ };
+ $AffichageInterne->($racine, "", " ", "-", " ");
+}
+
+sub AffichageArbre # Prend une fonction pour l'affichage
+{
+ my ($racine)=shift;
+ my ($function)=shift;
+ my ($len)=4;
+ my $AffichageInterne;
+
+
+ $AffichageInterne= sub
+ {
+ my ($node) = shift;
+ my ($start) = shift; # début commun à tout ce noeud (et descendants)
+ my ($up) = shift; # quand on est au dessus de ce noeud
+ my ($here) =shift; # quand on affiche ce noeud
+ my ($down) =shift; # quand on est au dessous de ce noeud
+ my ($at) =shift; # quand on les autres lignes de ce noeud
+
+ my($nb_fils)=NbFils($node);
+ my($i, $j, $sep);
+ my (@tableau)=split (/\n/, $function->($node));
+ if ($nb_fils >= 1) {
+ $AffichageInterne->($node->{"children"}->[0],
+ $start.$up.(" "x$len), " ", "/", "|", "|");
+ }
+ for ($i=1; $i<$nb_fils/2; $i++) {
+ $AffichageInterne->($node->{"children"}->[$i],
+ $start.$up.(" "x$len), "|", "|", "|", "|");
+ }
+ print $start.$here.("-"x$len)."* ", $tableau[0], "\n";
+ if ($nb_fils > 1) {
+ $sep="|";
+ } else {
+ $sep=" ";
+ }
+ for ($j=1; $j<=$#tableau; $j++) {
+ print $start.$at.(" "x$len).$sep." ", $tableau[$j], "\n";
+ }
+ # print $start.$here.("-"x$len)."* ", $function->($node), "\n";
+ for ( ;$i < $nb_fils-1; $i++) {
+ $AffichageInterne->($node->{"children"}->[$i],
+ $start.$down.(" "x$len), "|", "|", "|", "|");
+ }
+ if ($nb_fils > 1) {
+ $AffichageInterne->($node->{"children"}->[$nb_fils-1],
+ $start.$down.(" "x$len), "|", "\\", " ", " ");
+ }
+ };
+ $AffichageInterne->($racine, "", " ", "-", " ", " ");
+}
+
+###############################################################
+## FONCTION DEFINISSANT LES INFOS QUI VONT ETRE AFFICHEES #####
+###############################################################
+
+# Return results of the test: ddl, p_value, significatif or not, texte and warning
+sub TestInfos
+{
+ my($node)=shift;
+ return InfosAffichees($node, 2);
+
+# my($chaine)=Name($node)."\n";
+# my($lbl_test)=0;
+# my $test;
+# if (defined $node->{"res_test"}) {
+# for $test (@{$node->{"res_test"}}) {
+# $chaine.="[".$test->{"level"}."]"." ddl= ".$test->{"ddl"}.
+# " chi2= ".$test->{"chi2"}.
+# " p_value_chi2= ".$test->{"p_val"}.
+# }
+# }
+# return($chaine);
+
+}
+sub AssociationInfos
+{
+ my($node)=shift;
+ return InfosAffichees($node, 1);
+}
+
+sub TreeInfos
+{
+ my($node)=shift;
+ return InfosAffichees($node, 0);
+}
+
+#Return ddl, level, pvalues and chi2
+sub InfosAffichees
+{
+ my($node)=shift;
+ my($mode)=shift;
+ my($chaine)=Name($node);
+ my($lbl_test)=0;
+ my $test;
+ if ($mode==1 || $mode == 2) { # Affiche ou pas les case/control
+ $chaine.=" case/control:".$node->{"case"}."/".$node->{"control"};
+ }
+ if (1) { # affiche les apomorphies
+ $chaine.="\n";
+ foreach my $apo ($node->GetApoList()) {
+ $chaine.= (" Site: ".$apo->GetSiteNb." Sens: ".$apo->GetSensLabel()."\n");
+ }
+ }
+ $chaine.="\n";
+ if (1) { # affiche ou pas les ddl
+ if (defined $node->{"res_test"}) {
+ for $test (@{$node->{"res_test"}}) {
+ $chaine.= sprintf "[%d] ddl=%d",
+ $test->{"level"}, $test->{"ddl"};
+ if ($test->{"ddl"} > 0) {
+ $chaine.= sprintf " chi2=%.2f p_value_chi2=%.3g",
+ $test->{"chi2"}, $test->{"p_val"};
+ # TODO : ça arrive quand on a que des malades ou témoins
+ # dans les clades...
+ if (not defined($test->{"chi2"})) {
+ print "chi2 for ", Name($node),
+ "(", $test->{"ddl"}, ")", "\n";
+ }
+ if (not defined($test->{"p_val"})) {
+ print "p_val for ", Name($node),
+ "(", $test->{"ddl"}, ")", "\n";
+ }
+ if ($mode ==2) {
+ if (defined($test->{"sign"})) {
+ if ($test->{"sign"} == ALTree::Chi2::NON_SIGNIFICATIF) {
+ $chaine .= " (non significatif)";
+ } elsif ($test->{"sign"} == ALTree::Chi2::SIGNIFICATIF) {
+ $chaine .= " (significatif)";
+ } else {
+ ALTree::Utils::internal_error("unknown value ".
+ $test->{"sign"});
+ }
+ }
+ if (defined($test->{"texte"})) {
+ $chaine .= "\n".$test->{"texte"};
+ }
+ if (defined($test->{"warning"})) {
+ $chaine .= "\n".$test->{"warning"};
+ }
+ }
+ }
+ $chaine.="\n";
+ }
+ }
+ }
+ return($chaine);
+
+}
+##########################################################
+######## MODIFICATIONS/CALCULS SUR L'ARBRE ###############
+##########################################################
+
+sub FusionBrNulles
+{
+ my($present_node)=shift;
+ my($child);
+ my($nb_fils)=NbFils($present_node);
+
+ $present_node->{"label"}=$present_node->{"id"};
+ $present_node->RecordOrigFather();
+ if ($nb_fils != 0) { # on n'est pas dans une feuille
+ $present_node->AddOldChild($present_node->GetChildrenList());
+ $present_node->ForgetChildren();
+ foreach $child ($present_node->GetOldChildrenList()) {
+ if (! FusionBrNulles($child)) {
+ $present_node->AddChild($child);
+ }
+ }
+ if (not $present_node->HasFather()) {
+ return 0;
+ }
+ if (not defined $present_node->{"br_len"}) {
+ print STDERR "Branch lenght not defined for ", $present_node->{"id"}, "\n";
+ exit 1;
+ } elsif ($present_node->GetBrLen() == 0) { # branche nulle
+ #print "brnulle ", $present_node->{"id"}, " ";
+ foreach $child (@{$present_node->{"children"}}) {
+ $child->{"father"}=$present_node->{"father"}; #remplace father
+ #print "father's name ", $present_node->GetFather()->Name(),"\n";
+ $present_node->GetFather()->AddChild($child);
+ }
+ $present_node->{"father"}->{"label"}.="+(".$present_node->{"label"}.")";
+ return 1;
+ }
+ }
+ return 0;
+}
+
+
+##########################################################
+################### CLEAN FUNCTION ######################
+##########################################################
+
+sub CleanCaseControl
+{
+ my($tree)=shift;
+
+ foreach my $node ($tree->GetNodesList()) {
+ $node->EraseCase();
+ $node->EraseControl();
+ }
+}
+
+sub CleanChi2
+{
+ my($tree)=shift;
+
+ foreach my $node ($tree->GetNodesList()) {
+ delete $node->{"res_test"};
+ }
+}
+
+##########################################################
+########### FUNCTIONS FOR ASSOCIATION TEST ###############
+##########################################################
+
+# From the hash correspondance, fill the variables necessary for Resampling
+sub Correspond2Resampling
+{
+ my($correspondance)=shift;
+ my($haploID, $ref_effectif, $total_mal, $total_tem);
+ foreach $haploID (keys %{$correspondance}) {
+ $ref_effectif->{$haploID}=$correspondance->{$haploID}->{"case"}+
+ $correspondance->{$haploID}->{"control"};
+ $total_mal+=$correspondance->{$haploID}->{"case"};
+ $total_tem+=$correspondance->{$haploID}->{"control"};
+ }
+ # DEBUG print "total_mal=$total_mal total_tem=$total_tem\n";
+ return ($total_mal, $total_tem, $ref_effectif);
+}
+
+
+sub Resampling # repompée intégralement de tree_resampling puis modifiée....
+{
+ my($total_mal) = shift;
+ my($total_tem) = shift;
+ my($ref_effectif) = shift; # ref on a hash: keys=H002 value= nbmal+nb_tem
+ my($clefs, $alea, $i);
+ my($new_correspondance);
+ foreach $clefs (keys %{$ref_effectif}) {
+ $new_correspondance->{$clefs}->{"case"}=0;
+ $new_correspondance->{$clefs}->{"control"}=0;
+ for ($i=0; $i<$ref_effectif->{$clefs}; $i++) {
+ $alea=rand($total_mal+$total_tem);
+ # print "alea=$alea";
+ if ($alea < $total_mal) {
+ # print "inf\n";
+ $total_mal--;
+ $new_correspondance->{$clefs}->{"case"}++;
+ $new_correspondance->{$clefs}->{"control"}+=0;
+ } else {
+ # print "sup\n";
+ $total_tem--;
+ $new_correspondance->{$clefs}->{"control"}++;
+ $new_correspondance->{$clefs}->{"case"}+=0;
+ }
+ }
+# print "clefs:$clefs nb_mal=$nb_mal{$clefs}, nb_tem=$nb_tem{$clefs}\n";
+ }
+ return ($new_correspondance);
+}
+
+sub StockeChi2
+
+{
+ my($ligne_chi2)=shift;
+ my $racine=shift;
+ my $test_res;
+ foreach $test_res (@{$racine->{"res_test"}}) {
+ # Si on n'a qu'une seule branche, la p-value n'est pas définie
+ if ($test_res->{"ddl"} > 0) {
+ push @{$ligne_chi2}, $test_res->{"chi2"};
+ }
+ }
+ # Fill a 2*n table: each line containig chi2 and each columns
+ # corresponding to one repetition
+ #push (@{$table_of_line}, \@ligne_chi2);
+}
+
+
+sub Association
+{
+ my($racine)=shift;
+ my($correspondance)=shift;
+ my($prolonge)=shift;
+ my($sign_util)=shift;
+ my($total_mal, $total_tem, $effectif, $new_correspondance);
+ ($total_mal, $total_tem, $effectif)=Correspond2Resampling($correspondance);
+ ($new_correspondance)=Resampling($total_mal, $total_tem, $effectif);
+
+ # DEBUG my($haploID);
+ #foreach $haploID (keys %{$new_correspondance}) {
+ # print "Haplo: $haploID mal= ",$new_correspondance->{$haploID}->{"case"}, " tem=", $new_correspondance->{$haploID}->{"control"},"\n";
+ #}
+ #print "\n";
+
+ FillCaseControl($racine,$new_correspondance);
+ parcours_nosplit_chi2split($racine->{"children"}, $prolonge,
+ SplitMode::NOSPLIT, $racine, $sign_util);
+}
+
+sub RepeatAssociation
+{
+ my($tree)=shift;
+ my($correspondance)=shift;
+ my($prolonge)=shift;
+ my($nb_permutation)= shift;
+ my($sign_util)=shift;
+
+ my($racine)=$tree->GetRoot();
+
+ my($ligne_chi2)=[];
+ print "\n Number of permutation: $nb_permutation\n";
+
+ my($value_per_line, $test_res);
+ foreach $test_res (@{$racine->{"res_test"}}) {
+ # Si on n'a qu'une seule branche, la p-value n'est pas définie
+ if ($test_res->{"ddl"} > 0) {
+ $value_per_line++;
+ }
+ }
+
+ # !!! Est_ce que ça serait bien de passer value_per_mine en parametre de stocke_chi2 et de vérifier qu'on a bien le bon nb de valeur par ligne? !!!
+
+
+ StockeChi2($ligne_chi2, $racine); # Chi2 values corresponding to the real data are put to @{$ligne_chi2}
+ my($i, $j);
+ for ($i=0; $i<$nb_permutation; $i++) {
+ CleanCaseControl($tree);
+ CleanChi2($tree);
+ Association($racine, $correspondance, $prolonge, $sign_util);
+ StockeChi2($ligne_chi2, $racine);
+ }
+
+ #for (my($i)=0; $i<scalar @{$ligne_chi2}; $i++) {
+# print $ligne_chi2->[$i], " ";
+# }
+
+ return($value_per_line, $ligne_chi2);
+}
+
+##########################################################
+################# LOCALISATION ###########################
+##########################################################
+
+sub CalculateRit
+{
+ my($tree)=shift;
+ my($s_site_nb)=shift;
+ my($s_state)=shift;
+ my($co_evo)=shift;
+ my($clef);
+ my($info_mutation);
+ my($s_t, $s_t_rev)=(0,0);
+
+ my($s_sitesens_per_tree)=$tree->GetSite($s_site_nb)
+ ->GetSens($s_state);
+
+ if (not defined($s_sitesens_per_tree)) {
+ warn("No S site (number $s_site_nb)".
+ " with sens '".$s_state->GetLabel()."' found\n");
+ }
+ # Calcul du Rit
+ # Notation des commentaires: le s_site mute de T->M
+ foreach my $node ($s_sitesens_per_tree->GetNodesList()) {
+ foreach my $sitesens_per_tree ($node->GetApoList()) {
+ if ($sitesens_per_tree == $s_sitesens_per_tree) {
+ # on profite du fait pour incrémenter le nombre de
+ # mutation de s_site
+ # (On aurait aussi pu globalement incrémenter s_t
+ # de la taille du tableau du premier foreach :
+ # en effet, on passe ici une fois pour chaque
+ # foreach du second niveau)
+ $s_t++;
+ } else {
+ # le sitesens co-mute par ex de 1->2
+ $sitesens_per_tree->IncRit();
+ }
+ }
+ }
+
+ if ($co_evo == CoEvo::DOUBLE){
+ # On 'retourne' le sens s_state
+ $s_state->Switch();
+ my $s_sitesens_per_tree_rev=$tree->GetSite($s_site_nb)
+ ->GetSens($s_state);
+ # On le remet dans le bon sens après l'avoir tout tourneboulé
+ $s_state->Switch();
+
+ if (defined($s_sitesens_per_tree_rev)) {
+ # Calcul du Rit
+ foreach my $node ($s_sitesens_per_tree_rev->GetNodesList()) {
+ foreach my $sitesens_per_tree ($node->GetApoList()) {
+ if ($sitesens_per_tree == $s_sitesens_per_tree_rev) {
+ # nombre de mutation inverse du s_site (M->T)
+ # (même remarque que précédemment)
+ $s_t_rev++;
+ } else {
+ # le sitesens co-mute de 2->1 avec s_site M->T
+ # donc on incrémente Rit pour sitesens 1->2
+ $sitesens_per_tree->GetSensRev()->IncRit();
+ }
+ }
+ }
+ }
+ } elsif ($co_evo == CoEvo::SIMPLE){
+ } else {
+ die "Invalid value for co_evo: $co_evo - should be 0 or 1\n";
+ }
+ return($s_t, $s_t_rev);
+}
+
+sub CalculateEit
+{
+ my($tree)=shift; # Comme d'hab
+ my($s_site_nb)=shift; # Pas utile ici !
+ my($s_t)=shift; # nombre de fois où S mute T->M
+ my($s_t_rev)=shift; # nombre de fois où S mute M->T
+ my($b_t)=shift; # nombre de branches au total dans l'arbre
+ # (après fusion des branches nulles)
+
+ # Calcul du Eit (et implicitement le Mit)
+ foreach my $site_per_tree ($tree->GetSitesList()) {
+ foreach my $sitesens_per_tree ($site_per_tree->GetSensList()) {
+ $sitesens_per_tree->
+ SetEit(($sitesens_per_tree->GetMit()*$s_t+
+ $sitesens_per_tree->GetSensRev()->GetMit()*$s_t_rev)
+ /$b_t);
+ # print " m_it= ", $sitesens_per_tree->GetMit(),"\n";
+ # print $site_per_tree->GetSiteNb()," ", $sitesens_per_tree->GetEit(), "\n";
+ }
+ }
+}
+
+sub PrintAllVit
+{
+ my($tree)=shift;
+ my($s_site_nb)=shift;
+ my($mutation , $sens);
+ foreach my $site_per_tree ($tree->GetSitesList()) {
+ if ($site_per_tree->GetSiteNb() == $s_site_nb) {
+ next;
+ }
+ foreach my $sitesens_per_tree ($site_per_tree->GetSensList()) {
+ print "mutation= ",$site_per_tree->GetSiteNb(), "\t";
+ print "sens= ", $sitesens_per_tree->GetSensLabel(),"\n";
+ print " m_it= ", $sitesens_per_tree->GetMit(),
+ " R_it= ", $sitesens_per_tree->GetRit(),
+ " E_it= ", $sitesens_per_tree->GetEit(),
+ " V_it= ", $sitesens_per_tree->GetVit(),"\n";
+ }
+ }
+
+}
+
+sub PrintAllVi
+{
+ my($foret)=shift;
+ my($s_site_nb)=shift;
+ my($mutation , $sens);
+ foreach my $site_per_foret ($foret->GetSitesList()) {
+ if ($site_per_foret->GetSiteNb() == $s_site_nb) {
+ next;
+ }
+ foreach my $sitesens_per_foret ($site_per_foret->GetSensList()) {
+ print "mutation= ",$site_per_foret->GetSiteNb(), "\t";
+ print "sens= ", $sitesens_per_foret->GetSensLabel(),"\t";
+ print " V_i= ", $sitesens_per_foret->GetVi(),"\n";
+ }
+ }
+
+}
+
+# Pour chaque site, on a choisi un sens en fonction du Vi (max) et on
+# affiche le tableau des Vi pour tous les sites et pour le sens choisi
+sub PrintViMax
+{
+ my($foret)=shift;
+ my($s_site_nb)=shift;
+ foreach my $site ($foret->GetViMaxSiteList()) {
+ if ($site->GetSiteNb() == $s_site_nb) {
+ next;
+ }
+ print "site number ", $site->GetSiteNb(), "\n";
+ foreach my $sens ($site->GetViMaxSensList()) {
+ print "\tsens ", $sens->GetSensLabel(), "\t";
+ print "V_i = ", $sens->GetVi(), "\n";
+ }
+ }
+}
+
+# Affiche le tableau de tous les Vi, pour tes les sites et pour tous
+# les sens (triés par ordre décroissant)
+sub PrintViMaxSens
+{
+ my($foret)=shift;
+ my($s_site_nb)=shift;
+ foreach my $sens ($foret->GetViMaxSensList()) {
+ if ($sens->GetSiteNb() == $s_site_nb) {
+ next;
+ }
+ print "site number ", $sens->GetSiteNb(), "\t";
+ print "\tsens ", $sens->GetSensLabel(), "\t";
+ print "V_i = ", $sens->GetVi(), "\n";
+ }
+}
+
+###########################################################
+# Fonctions du prog principal #############################
+###########################################################
+sub check_tree_numbers
+{
+ my $num_tree_in_file=shift;
+ my $user_tree_numbers=shift;
+ my @tree_numbers;
+ my %selected_trees;
+
+ for my $tree_num (@{$user_tree_numbers}) {
+ if ($tree_num < 1) {
+ erreur("Invalid tree-to-analyse $tree_num\n", 0);
+ } elsif ($tree_num > $num_tree_in_file) {
+ erreur("Invalid tree-to-analyse $tree_num (only $num_tree_in_file in file)\n", 0);
+ }
+ if (defined($selected_trees{$tree_num})) {
+ erreur("Invalid tree-to-analyse $tree_num (already selected)\n", 0);
+ }
+ $selected_trees{$tree_num}=1;
+ # Correspondance entre les numéros de l'utilisateur et les
+ # indices dans le tableau (ie commence à 1 ou à 0)
+ push @tree_numbers, $tree_num-1;
+ }
+ return \@tree_numbers;
+}
+
+sub select_trees
+{
+ my $max=shift;
+ my $nb=shift;
+
+ my @tab;
+ for (my $i=0; $i<$max; $i++) {
+ $tab[$i]=$i;
+ }
+ my @selected;
+ for (my $i=0; $i<$nb; $i++) {
+ my $alea=int(rand($max--));
+ push @selected, $tab[$alea];
+ splice(@tab, $alea, 1);
+ }
+ return \@selected;
+}
+
+sub PrintTree {
+ my $tree=shift;
+
+ my ($racine)=$tree->GetRoot();
+ AffichageArbre($racine, \&TreeInfos);
+ print "\n\n";
+}
+
+sub SwitchRoot {
+ my $tree= shift;
+ my $outgroup=shift;
+
+ my $root=$outgroup->GetFather();
+ $tree->ChangeRoot($root);
+ my $newracine=$tree->GetRoot();
+}
+
+###########################################################
+
+sub manage_options
+{
+ my %options;
+ my $result;
+
+ my $choix={ "data-type" =>
+ { "snp" => DataType::SNP,
+ "dna" => DataType::DNA,
+ },
+ "rootmeth" =>
+ { "outgroup" => RootMeth::OUTG,
+ "ancestor" => RootMeth::ANC,
+ },
+ "tree-building-program" =>
+ { "phylip" => PhylProg::PHYLIP,
+ "paup" => PhylProg::PAUP,
+ "paml" => PhylProg::PAML,
+ },
+ "splitmode" =>
+ { "chi2split" => SplitMode::CHI2SPLIT,
+ "nosplit" => SplitMode::NOSPLIT,
+ },
+ "co-evo" =>
+ { "simple" => CoEvo::SIMPLE,
+ "double" => CoEvo::DOUBLE,
+ },
+ };
+
+ my $handle_choix = sub {
+ my $option=shift;
+ my $value=shift;
+
+ foreach my $key (keys %{$choix->{$option}}) {
+ if ($key=~/^$value/i) {
+ $options{$option."-value"}=$choix->{$option}->{$key};
+ return;
+ }
+ }
+ die "Option '$option': unauthorized value '$value'\n";
+ };
+ my $handle_args = sub {
+ my $name=shift;
+ die "What about '$name' ?\n";
+ };
+ my $handle_progname = sub {
+ my $name=shift;
+ die "What about '$name' ?\n";
+ };
+
+
+ %options=("<>" => $handle_args);
+
+ foreach my $option (keys %{$choix}) {
+ $options{$option}=$handle_choix;
+ }
+
+ GetOptions (\%options,
+ "version",
+ "short-help|h",
+ "help",
+ "man",
+ "association|a!", # !!! demander pour le ! à Vince
+ "s-localisation|l!",
+ "first-input-file|i=s",
+ "second-input-file|j=s",
+ "output-file|o=s",
+ "data-type|t=s",
+ "remove-outgroup!",
+ "outgroup=s",
+ "tree-building-program|p=s",
+ "splitmode|s=s",
+ "prolongation|b!",
+ "chi2-threshold|n=f",
+ "permutations|r=i",
+ "number-of-trees-to-analyse=i",
+ "tree-to-analyse=i@",
+ "s-site-number=i",
+ "s-site-characters=s",
+ "co-evo|e=s",
+ "print-tree!",
+ "anc-seq=s",
+ "<>",
+ ) or pod2usage(2);
+ if (defined($options{"version"})) {
+ print $0, " version ", $VERSION, "\n";
+ print "(CUtils version ", $ALTree::CUtils::VERSION,
+ "; chi2.pm version ", $ALTree::Chi2::VERSION,
+ "; Perl version ", $], ")\n";
+ exit 0;
+ }
+ if (defined($options{"short-help"})) {
+ pod2usage(-exitstatus => 0, -verbose => 0);
+ }
+ if (defined($options{"help"})) {
+ pod2usage(-exitstatus => 0, -verbose => 1);
+ }
+ if (defined($options{"man"})) {
+ pod2usage(-exitstatus => 0, -verbose => 2);
+ }
+
+ delete($options{"<>"});
+ foreach my $option (keys %{$choix}) {
+ delete($options{$option});
+ if (exists($options{$option."-value"})) {
+ $options{$option}=$options{$option."-value"};
+ delete($options{$option."-value"});
+ }
+ }
+
+ return \%options;
+}
+
+sub main
+{
+ my($rec_program);
+ my $result;
+ my $options;
+
+ my $option_require = sub {
+ my $option=shift;
+ my $texte=shift;
+ if (not exists($options->{$option})) {
+ my $msg="Error: option '$option' needed";
+ if (defined($texte)) {
+ $msg.="\n".$texte;
+ }
+ pod2usage("Error: option '$option' required");
+ }
+ };
+ my $option_value = sub {
+ my $option=shift;
+ my $default=shift;
+ my $msg=shift;
+ if (not exists($options->{$option})) {
+ if (defined $msg) {
+ print STDERR $msg, "\n";
+ }
+ return $default;
+ }
+ return $options->{$option};
+ };
+ my $option_selected = sub {
+ my $option=shift;
+ my $texte=shift;
+ if (not exists($options->{$option})) {
+ my $msg="option '$option' not selected";
+ if (defined($texte)) {
+ $msg.="\n".$texte;
+ }
+ return 0;
+ } else {
+ return 1;
+ }
+ };
+
+ $options=manage_options();
+
+ my($prolonge)=$option_value->("prolongation", 1);
+ my($print_tree)=$option_value->("print-tree", 0);
+
+ $option_require->("tree-building-program");
+ my($phylo_program)=$option_value->("tree-building-program");
+
+ $option_require->("first-input-file");
+ my $input_file=$option_value->("first-input-file");
+
+ my($association)=$option_value->("association", 0);
+ my($s_loc)=$option_value->("s-localisation", 0);
+ if (!$association && !$s_loc) {
+ erreur("Should I perform the association test or the".
+ " localisation test ?\n(use option '--association'".
+ " or '--s-localisation'.)\n", 1);
+ }
+ if ($option_selected->("output-file")) {
+ my $out=$option_value->("output-file");
+ open(STDOUT, '>', $out)
+ or erreur("Unable to write in '$out': $!\n", 0);
+ }
+
+ my $datatype;
+ my $ancetre="";
+ if ($phylo_program == PhylProg::PHYLIP) {
+ $option_require->("data-type");
+ $datatype=$option_value->("data-type");
+ if ($option_selected->("anc-seq")) {
+ $ancetre=$option_value->("anc-seq");
+ }
+ }
+
+ ###########################################################
+ # Récupération et précalcul des arbres qu'on va utiliser
+ ###########################################################
+
+ my @trees;
+ {
+ my($input_file)=ALTree::Input::ReadInputFile1($input_file, $phylo_program,
+ $datatype, $ancetre);
+ my $num_trees_in_file=$input_file->{"nb_trees"};
+
+ my(@no_tree);
+ my($user_tree_numbers)=$option_value->("tree-to-analyse", \@no_tree);
+ my $tree_numbers=check_tree_numbers($num_trees_in_file, $user_tree_numbers);
+
+ my $nb_tree_selected=scalar(@{$tree_numbers});
+ if ($association) {
+ if ($nb_tree_selected == 0) {
+ $tree_numbers=select_trees($num_trees_in_file, 1);
+ } elsif ($nb_tree_selected > 1) {
+ erreur("Only one tree can be selected for association\n");
+ }
+ }
+ if ($s_loc) {
+ if ($nb_tree_selected == 0) {
+ my($trees_to_analyse)=$option_value->("number-of-trees-to-analyse",
+ undef);
+ if (not defined($trees_to_analyse)) {
+ print STDERR "Warning: no option number-of-trees-to-analyse".
+ " or tree-to-analyse: using all ($num_trees_in_file)".
+ " trees";
+ $trees_to_analyse=$num_trees_in_file;
+ }
+ if ($trees_to_analyse>$num_trees_in_file) {
+ erreur("Invalid number of trees to analyse :".
+ " your file contains only".
+ " $num_trees_in_file trees\n", 0);
+ }
+ if ($trees_to_analyse<1) {
+ erreur("Not enought trees to analyse".
+ " ($trees_to_analyse)\n", 0);
+ }
+ $tree_numbers=select_trees($num_trees_in_file, $trees_to_analyse);
+ } elsif ($nb_tree_selected > $num_trees_in_file) {
+ erreur("Invalid number of trees to analyse :".
+ " your file contains only".
+ " $num_trees_in_file trees\n", 0);
+ }
+ }
+
+ my $anctype=$input_file->{"anctype"};
+ if ($anctype == ANC::Rooted &&
+ ($option_selected->("outgroup")
+ || $option_selected->("remove-outgroup"))) {
+ erreur("You cannot use the options '--outgroup' or".
+ " '--remove-outgroup' because your input file '"
+ .$input_file->{"filename"}."' contains trees rooted".
+ " with an ancestral sequence.\n", 1);
+ }
+ if ($anctype == ANC::OutGroup) {
+ my $outgroup=$input_file->{"outgroup"};
+ if (defined($outgroup)) {
+ if ($option_value->("outgroup", $outgroup) ne $outgroup) {
+ erreur("The option '--outgroup' tell me to use '".
+ $option_value->("outgroup")."' as an outgroup ".
+ "whereas the file '".$input_file->{"filename"}.
+ "' contains trees rooted with the outgroup '".
+ $outgroup."'.\n", 1);
+ }
+ } else {
+ $input_file->{"outgroup"}=$option_value->("outgroup", undef);
+ }
+ }
+ my ($switchroot)="";
+ if ($anctype == ANC::Unrooted) {
+ $input_file->{"outgroup"}=$option_value->("outgroup", undef);
+ $switchroot=$option_value->("outgroup", 0);
+ }
+ if ($option_selected->("remove-outgroup")
+ && not defined($input_file->{"outgroup"})) {
+ if ($anctype == ANC::OutGroup) {
+ erreur("You tell me to remove the outgroup for the".
+ " analyses. ".
+ "The input file '".$input_file->{"filename"}.
+ "' contains trees rooted using ".
+ "an outgroup but I cannot automaticaly find which one".
+ " has been used.\nPlease, provide me the outgroup".
+ " (option '--outgroup')\n", 0);
+ } else {
+ erreur("You tell me to remove the outgroup for the".
+ " analyses, ".
+ "however, I do not know what is the outgroup\n".
+ "Please, use the '--outgroup' option\n", 0);
+ }
+ }
+ if ($association
+ && $anctype == ANC::Unrooted
+ && not defined($input_file->{"outgroup"})) {
+ erreur("I need a rooted tree to perform the association".
+ " test. However, the input file '".
+ $input_file->{"filename"}."' contains unrooted trees\n".
+ "Please, provide me an outgroup (option '--outgroup')\n"
+ , 1);
+ #erreur("I need a rooted tree to perform the association".
+ # " test.\nThe input file '".$input_file->{"filename"}.
+ # "' contains trees rooted using ".
+ # "an outgroup\nbut I cannot automaticaly find which one".
+ # " has been used.\nPlease, provide me the outgroup".
+ # " (option '--outgroup')\n"
+ # , 1);
+ }
+
+ my $remove_outgroup=$option_value->("remove-outgroup", 0);
+ for my $num_tree (@{$tree_numbers}) {
+ my $file_tree=PrepareTree($phylo_program, $input_file,
+ $datatype, $ancetre, $num_tree);
+ push @trees, $file_tree;
+
+ my ($tree)=$file_tree->{"tree"};
+ my $outgroup;
+ if (defined($input_file->{"outgroup"})) {
+ $outgroup=$tree->GetNode($input_file->{"outgroup"});
+ if (not defined($outgroup)) {
+ erreur ("I cannot find the outgroup '".
+ $input_file->{"outgroup"}."' in the".
+ " tree number ".($file_tree->{"index"}+1).
+ " in file '".$input_file->{"filename"}.
+ "'. It does not correspond to any node!\n", 0);
+ }
+ if (!$switchroot) {
+ if ($outgroup->GetFather() != $tree->GetRoot()) {
+ erreur("The outgroup '".$outgroup->Name().
+ "' is not just under the root ".
+ "for the tree number ".
+ ($file_tree->{"index"}+1).
+ " in file '".$input_file->{"filename"}.
+ "'.\nDo you choose the rigth outgroup ?\n", 0);
+ }
+ }
+ }
+ if ($switchroot) {
+ SwitchRoot($tree, $outgroup);
+ }
+ if ($remove_outgroup) {
+ RemoveOutgroup($tree, $outgroup);
+ }
+
+ if ($print_tree) {
+ PrintTree($tree);
+ }
+ if ($s_loc && defined($file_tree->{"has_ambiguity"})) {
+ erreur("Some apomorphies are ambiguous in the".
+ " tree number ".($file_tree->{"index"}+1).
+ " in file '".$input_file->{"filename"}.
+ "' (I find the character state '?').".
+ " It cannot be used for the localisation test.\n", 0);
+ }
+ }
+ }
+ print STDERR "read done\n";
+ ###########################################################
+ # Let's go. D'abord pour l'association
+ ###########################################################
+
+ if ($association == 1) {
+ my($splitmode)=SplitMode::NOSPLIT; # nosplit est imposé
+
+ # name of the file containing haploID, nb case and nb control
+ my($name_corres)=$option_value->("second-input-file", "correspond.txt");
+ my($correspondance); # ref on a hash containing haploID refferring to
+ # a hash containing nb case and nb control
+ $correspondance=ALTree::Input::ReadCorrespond($name_corres);
+
+ my($file_tree)=$trees[0];
+ my($tree)=$file_tree->{"tree"};
+
+ my($outgroup)=$file_tree->{"file"}->{"outgroup"};
+ if (CheckCorrespondance($tree, $correspondance, $name_corres,
+ $outgroup)) {
+ if (!$option_selected->("remove-outgroup")) {
+ print STDERR "Warning: assuming option '--remove-outgroup' as".
+ " the outgroup '".$outgroup.
+ "' is not in the file '".$name_corres."'\n";
+
+ RemoveOutgroup($tree, $tree->GetNode($outgroup));
+ }
+ } else {
+ if ($option_selected->("remove-outgroup")) {
+ erreur("You tell me to remove the outgroup '$outgroup',".
+ " however it is present in the file '".
+ $name_corres.". Please, check your data.'\n", 0);
+ }
+ }
+ #print "\n";
+ FusionBrNulles($tree->GetRoot());
+ # Structure changée, on recalcul...
+ FillHeight($tree->GetRoot(), 0);
+ FillLevel($tree->GetRoot(), 0);
+ FillCaseControl($tree->GetRoot(),$correspondance);
+
+ print "\n";
+
+ my $racine=$tree->GetRoot();
+ my @children=$racine->GetChildrenList();
+
+ $option_require->("permutations",
+ "The number of permutations used to calculate".
+ " exact p-values must be specified or set to 0\n");
+
+ my $permutation=$option_value->("permutations");
+ my($sign_util);
+ if ($permutation==0) {
+ my($seuil_chi2)=$option_value->("chi2-threshold", 0.01,
+ "Using default chi2 threshold 0.01");
+ ALTree::Chi2::definition_p_chi2($seuil_chi2, 0.01); # mettre une option
+ # pour seuil test_prop
+ $sign_util = SignUtil::YES # on a besoin de la significativité
+ } elsif ($permutation>0) {
+ $sign_util = SignUtil::NO; # on n'a pas besoin de la sign
+ } else {
+ die "invalid value for the number of permutation: $permutation\n";
+ }
+ parcours_nosplit_chi2split(\@children, $prolonge, $splitmode, $racine, $sign_util );
+
+ {
+ if ($permutation==0) {
+ AffichageArbre($racine, \&TestInfos);
+ } elsif ($permutation>0) {
+ AffichageArbre($racine, \&AssociationInfos);
+ my($value_per_line, $ligne_chi2);
+ ($value_per_line, $ligne_chi2)=RepeatAssociation
+ ($tree, $correspondance, $prolonge,$permutation, $sign_util);
+ my($corrected_values);
+ $corrected_values=ALTree::CUtils::double_permutation
+ ($permutation+1, $value_per_line, $ligne_chi2);
+
+ print "\n";
+ print "p_val for each level:\n";
+ my($i);
+ for ($i=0; $i<$value_per_line; $i++) {
+ print "level ", $i+1, " p-value (non corrected) ",
+ $corrected_values->{"chi2"}->[$i], "\n";
+ }
+ print "corrected minimal p_value in the tree: ",
+ $corrected_values->{"pmin"}, "\n";# at level TODO\n";
+ } else {
+ die "invalid value for the number of permutation: $permutation\n";
+ }
+ }
+ }
+
+ ###########################################################
+ # Let's go. Et pour la localisation
+ ###########################################################
+
+ if ($s_loc==1) {
+ #$option_require->("splitmode");
+ #my($splitmode)=$option_value->("splitmode");
+ print "Localisation method using S-character\n";
+ $option_require->("s-site-number");
+ my($s_site_nb)=$option_value->("s-site-number");
+ $option_require->("s-site-characters");
+ my($s_char_state)=$option_value->("s-site-characters");
+ $option_require->("co-evo");
+ my($co_evo_type)=$option_value->("co-evo");
+# print "co_evo_type=$co_evo_type\n";
+
+#DEBUG print "s_char_state=$s_char_state\n";
+ if (not ($s_char_state =~
+ m/([A-Za-z0-9]+)\s*[-=_]*[>]\s*([A-Za-z0-9]+)/)) {
+ erreur("Invalid character change for character".
+ " S. It should be Anc -> Der\n", 0);
+ }
+ my($s_anc)=$1;
+ my($s_der)=$2;
+ my($s_state)= ALTree::Sens->New($s_anc." --> ".$s_der);
+ my($foret)=ALTree::Foret->New();
+
+
+ #$Data::Dumper::Indent = 0;
+ for my $file_tree (@trees) {
+ my $tree=$file_tree->{"tree"};
+
+ my ($b_t)=$tree->GetNbBrNonNulle();
+
+ my $site=$tree->GetSite($s_site_nb);
+ if (not defined($site)) {
+ erreur("Invalid value ($s_site_nb) for".
+ " --s-site-number\n", 0);
+ }
+
+ my($s_t, $s_t_rev)=CalculateRit($tree, $s_site_nb, $s_state,
+ $co_evo_type);
+ CalculateEit($tree, $s_site_nb, $s_t, $s_t_rev, $b_t);
+ $foret->AddTree($tree);
+ }
+ $foret->CalculVi();
+ #PrintAllVi($foret, $s_site_nb);# Non trié
+ #PrintViMax($foret, $s_site_nb); # Affiche la liste en choisissant
+ #pour chaque sit, juste le meilleur sens
+ print "\n";
+ print "Results:\n";
+ PrintViMaxSens($foret, $s_site_nb);
+
+ }
+}
+
+
+sub PleinInfos {
+ my $node=shift;
+
+ my $suite=""; #"\nligne suivante\net encore après\n ";
+ if (defined ($node->{"father"})) {
+ return Name($node). "\nFrom: ". Name($node->{"father"}).$suite;
+ } else {
+ return Name($node).$suite;
+ }
+}
+
+use FileHandle;
+use IPC::Open2;
+sub my_test {
+ my $pid;
+
+ $pid = open2(*Reader, *Writer, "phylip mix" );
+ print Writer "r\no\n6\nw\na\n5\ny\nweight\nr\n";
+ while (<Reader>) {
+ print "PHYL: ", $_;
+ }
+
+}
+
+#my_test;
+#exit 0;
+
+main;
+
+#man perlpod
+
+__END__
+
+=head1 NAME
+
+altree - Analysing phylogeny trees
+
+=head1 SYNOPSIS
+
+altree [options]
+
+ Options:
+ --version program version
+ --short-help|h brief help message
+ --help help message with options descriptions
+ --man full documentation
+ --association|a perform the association test
+ --s-localisation|l perform the localisation using the S character
+ --first-input-file|i result_file from phylogeny reconstruction programs
+ --second-input-file|j file containing the nb of cases/controls carrying an haplotype
+ --output-file|o output_file
+ --data-type|t DNA|SNP
+ --outgroup outgroup_name
+ --remove-outgroup
+ --tree-building-program|p phylip|paup|paml
+ --splitmode|s nosplit|chi2split
+ --prolongation|b
+ --chi2-threshold|n value
+ --permutations|r number
+ --number-of-trees-to-analyse number
+ --tree-to-analyse number
+ --s-site-number number
+ --s-site-characters ancestral state -> derived state
+ --co-evo|e simple|double
+ --print-tree
+ --anc-seq ancestral sequence (only with phylip)
+
+=head1 OPTIONS
+
+=over 8
+
+=item B<--version>
+
+Print the program version and exits.
+
+=item B<--short-help>
+
+Print a brief help message and exits.
+
+=item B<--help>
+
+Print a help message with options descriptions and exits.
+
+=item B<--man>
+
+Prints the manual page and exits.
+
+=item B<--association|a>
+
+Perform the association test
+
+=item B<--s-localisation|l>
+
+Localise the susceptibility locus using the "S-character method"
+
+=item B<--first-input-file|i> F<result_file>
+
+Input file 1 (paup, phylip or paml results file)
+
+=item B<--second-input-file|j> F<correspond_file>
+
+Input file 2, default F<correspond.txt>
+
+=item B<--output-file|o> outfile
+
+Output file
+
+=item B<--data-type|t> C<DNA>|C<SNP>
+
+Type of data: DNA (ATGCU) or SNP (0-1)
+
+=item B<--outgroup> C<outgroup>
+
+Root the tree with this outgroup
+
+=item B<--remove-outgroup>
+
+Remove the outgroup of the tree before performing the tests
+
+=item B<--tree-building-program|p> C<phylip>|C<paup>|C<paml>
+
+Phylogeny reconstruction program
+
+=item B<--splitmode|s> C<nosplit>|C<chi2split>
+
+how tests are performed from a level to another
+
+=item B<--prolongation|b>
+
+Prolongation of branches in the tree
+
+=item B<--chi2-threshold|n> value
+
+Significance threshold for chi2 (default value 0.01)
+
+=item B<--permutations|r> number
+
+Number of permutations used to calculate exact p_values
+(Only for association test)
+
+=item B<--number-of-trees-to-analyse> number
+
+Number of trees to analyse in the localisation analysis
+(only for localisation method using S-character)
+
+=item B<--tree-to-analyse number>
+
+With this option, you can specify the tree to use (instead of
+random). Can be used several times to specify multiple trees.
+
+=item B<--s-site-number number>
+
+Number of the S character site in the sequence
+(only for localisation method using S-character)
+
+=item B<s-site-characters>
+
+Character states for the S character: ancestral state -> derived state
+ex: G->C or 0->1 (only for localisation method using S-character)
+
+=item B<co-evo|e>
+
+Type of co-evolution indice
+ simple: only the anc -> der transition of S is used
+ double: the two possible transitions are used
+
+=item B<print-tree>
+
+If this option is selected, the tree will be printed to the output
+
+=item B<anc-seq>
+
+With this option, you can specify the ancestral sequence.
+This option is only useful when the tree is reconstructed using the mix program of phylip with the ancestral states specified in the file "ancestors"
+
+=back
+
+=head1 DESCRIPTION
+
+B<This program> will read the given input file(s) and do someting
+useful with the contents thereof.
+
+=cut
diff --git a/trunk/altree-add-S b/trunk/altree-add-S
new file mode 100755
index 0000000000000000000000000000000000000000..fe733753d4644208d55275fac75d41c6c1a40c9c
--- /dev/null
+++ b/trunk/altree-add-S
@@ -0,0 +1,451 @@
+#!/usr/bin/perl
+
+#Ce programme etiquette les haplotypes malades (ajout d'un G) ou témoins (ajout d'un C), en fonction d'un seuil de malade et témoins qui le porte.
+#Le programme prend en entrée un fichier .paup, et redonne un autre .paup
+
+use strict;
+use diagnostics;
+use warnings;
+use Getopt::Long; # qw(:config permute);
+use Pod::Usage;
+#use Getopt::Std;
+
+our($opt_h,$opt_i, $opt_o, $opt_e, $opt_p, $opt_t, $opt_l, $opt_j, $opt_g);
+
+our $VERSION;
+$VERSION = sprintf "0.%03d", q$Revision$ =~ /(\d+)/g;
+
+sub DefineAncDer {
+ my $data_type=shift;
+ if ($data_type == 0) {
+ my $tem=0;
+ my $mal=1;
+ return ($tem, $mal);
+ } elsif ($data_type == 1) {
+ my $tem="C";
+ my $mal="G";
+ return ($tem, $mal);
+ }
+}
+
+sub ReadCorrespond
+{
+ my($name_correspond) =shift;
+ my($ligne, @tableau);
+ my(%correspondance);
+ open (CORRESP, '<', $name_correspond) || die "Unable to open file $name_correspond: $!\n";
+ while ($ligne=<CORRESP>) {
+ chomp($ligne);
+ if ($ligne =~ /^$/) {
+ next;
+ }
+ @tableau=split(/\s+/, $ligne);
+ if ($#tableau != 2) {
+ die "error in $name_correspond: not 3 columns at line '$ligne'\n";
+ } else {
+ $tableau[2]=~ s/c//;
+ $tableau[1]=~ s/m//;
+ if ($tableau[1] =~ /c/ || $tableau[2] =~ /m/) {
+ die "You have probably exchanged the order of cases and controls in file $name_correspond. It should be: haplo_name m_case_number c_control_number\n";
+ }
+ $correspondance{$tableau[0]}->{"case"}=$tableau[1]+0;
+ $correspondance{$tableau[0]}->{"control"}=$tableau[2]+0;
+ }
+ }
+ my($clefs);
+ #DEBUG
+ # foreach $clefs (keys %correspondance) {
+ # print "$clefs case: ", $correspondance{$clefs}->{"case"}, "\n";
+ # print "$clefs, control: ",$correspondance{$clefs}->{"control"}, "\n";
+ # }
+ return(\%correspondance);
+}
+
+sub travail
+{
+
+ my($seuil)=shift;
+ my($data_type)=shift;
+ my($proportion_malades)=shift;
+ my $low =shift;
+ my $name_correspond=shift;
+ my $outgroup = shift;
+ my($ligne);
+ my($temoin, $malade, $sequence, $nom, $debut, $ancetre);
+ my($anc, $num_car, $prop_mal, $prop_tem);
+ my(@tableau, @tab2);
+ my($tem, $mal)=DefineAncDer($data_type);
+ my($correspondance)=ReadCorrespond($name_correspond);
+
+ #foreach my $clefs (keys %{$correspondance}) {
+# print "$clefs case ", $correspondance->{$clefs}->{"case"}, "\n";
+# print "$clefs, control ",$correspondance->{$clefs}->{"control"}, "\n";
+# }
+ my $found_outgroup=0;
+ my $ici = 0;
+ my $phylo_prog= "Phylip";
+ my $compteur=0;
+ while ($ligne=<STDIN>){
+ chomp($ligne);
+ $compteur++;
+ my $diese='#';
+ if ($ligne =~ /^\s*$diese[N|n]exus\s*$/) {
+ $phylo_prog="PAUP";
+ }
+ if ($phylo_prog eq "PAUP") {
+ if ($ligne =~ /^\s*matrix\s*$/) {
+ print $ligne, "\n";
+ $ici=1;
+ next
+ }
+ if ($ligne =~ /^\s*;\s*$/) {
+
+ $ici=0;
+ }
+ } else {
+ if ($compteur>1) {
+ $ici=1;
+ }
+ }
+
+ if ($ici==0 && $phylo_prog eq "PAUP") {
+ if ($ligne =~ /dimension ntax=([0-9]+) nchar=([0-9]+);/) {
+ $num_car=$2+1;
+ print "dimension ntax=$1 nchar=", $num_car, ";\n";
+ }elsif ($ligne =~ /format symbols=\"([0-9ATGCU]+)\"/) {
+ my($format)=$1;
+ my($format_old)=$1;
+ $format =~ tr/GC//d;
+ $ligne =~ s/$format_old/${format}CG/;
+ print $ligne, "\n";
+ } elsif ($ligne =~ /ancstates\s+\*anc\s+vector\s*=\s*([0-9ATCG]+)\s*;/) {
+ $anc=$1;
+ $anc=$anc."?";
+ $ligne =~ s/$1/$anc/;
+ print $ligne,"\n";
+ } elsif ($ligne=~ /begin paup;/) {
+ print $ligne,"\n";
+ print "exclude $num_car; \n";
+ } elsif ($ligne=~ /\s*describetrees/) {
+ print "include $num_car;\n";
+ print $ligne,"\n";
+ } elsif ($ligne =~ /^\s*([0-9]+)\s+([0-9]+)$/) {
+ $num_car=$2+1;
+ print "$1\t$num_car\n";
+ } else {
+ print $ligne, "\n";
+ }
+ } elsif ($ici==0 && $phylo_prog eq "Phylip") {
+ if ($ligne =~ /^\s*([0-9]+)\s+([0-9]+)\s*$/) {
+ print $1, "\t", $2+1, "\n";
+ } else {
+ die "Strange line $ligne in Phylip file\n";
+ }
+ } elsif ($ici==1) {
+ if ($ligne =~ /^\s+$/) {
+ next;
+ } elsif ($ligne =~ /^\s*\[.+\]$/) {
+ # print STDERR "TTTTT\n";
+ next;
+ } else {
+ @tableau=split(/\s+/, $ligne);
+ $sequence=$tableau[1];
+ $nom=$tableau[0];
+ if ($nom eq $outgroup){
+ # $ancetre=$sequence."?";
+ print "$nom $sequence?\n";
+ $found_outgroup++;
+ next;
+ }
+ # } else {
+ #if ($debut =~ /^\s*H[0-9]{3}_m[0-9]{3}_c[0-9]{3}/) {
+ # @tab2=split(/_/,$debut);
+ # print $tab2[0],"\n";
+ # $temoin=$tab2[2];
+ # $temoin =~ s/c//;
+ # print STDERR "temoin=$temoin\n";
+ # $malade=$tab2[1];
+ # $malade =~ s/m//;
+ # if ($malade =~ /c/ || $temoin =~ /m/) {
+ # die "You have probably interverti cases and controls in file correspond.txt. It should be: haplo_name m_case_number c_control_number\n";
+ # }
+# if ($debut eq $anc_name){
+# $found_anc++;
+# }
+ #$nom=$tableau[0];
+ # print "$nom\n";
+ if (not exists ($correspondance->{$nom})){
+ print STDERR "$nom is not found in the file $name_correspond. Assuming it is the outgroup.\nThe number of cases and controls affected to this sequence is set to 0\n";
+ $correspondance->{$nom}->{"case"}=0;
+ $correspondance->{$nom}->{"control"}=0;
+ }
+ $malade=$correspondance->{$nom}->{"case"};
+ $temoin=$correspondance->{$nom}->{"control"};
+
+ if ($malade == 0 && $temoin == 0) {
+ print STDERR "$nom is carried by 0 cases and 0 controls. The state ? has been attributed to the S character\n";
+ $sequence.="?";
+ print "$nom ", $sequence, "\n";
+ next;
+ }
+
+ # print " $nom mal=$malade\n";
+ $prop_mal=$malade/($malade+$temoin);
+ $prop_tem=$temoin/($malade+$temoin);
+ # print "M=$malade T=$temoin\n";
+ #print "test=$test\n";
+ # if ($test==0) { # test: difference |mal-tem| >=seuil
+ # if ($malade > $temoin && $malade-$temoin>=$seuil) {
+ #$sequence.="G";
+ # } elsif ($malade < $temoin && $temoin-$malade>=$seuil) {
+ # $sequence.="C";
+ # } else {
+ # $sequence.="?";
+ # }
+ #} elsif ($test==1) {
+ # if ($malade+$temoin==1) {
+ #$sequence.="?";
+ if ($low !=0 && $malade+$temoin==1) {
+ $sequence.="?";
+ } else {
+ if ($prop_mal>$proportion_malades+
+ $seuil*sqrt($prop_mal*$prop_tem/($malade+$temoin))) {
+ $sequence.=$mal;
+ } elsif ($prop_mal<$proportion_malades-
+ $seuil*sqrt($prop_mal*$prop_tem/($malade+$temoin))) {
+ $sequence.=$tem;
+ } else {
+ $sequence.="?";
+ }
+ #}
+ }
+
+ print "$nom ", $sequence, "\n";
+ #"_m$malade", "_c$temoin\t", $sequence, "\n";
+ }
+
+ }
+ }
+ #print "anc? $found_anc\n";
+ if ($found_outgroup==0 && $outgroup ne "nooutgroup") {
+ die "outgroup not found in the file\n";
+ } elsif ($found_outgroup ==1 && $outgroup eq "noanc") {
+ die " false outgroup found\n";
+ } elsif ($found_outgroup > 1) {
+ die "Too many outgroups found ($found_outgroup outgroup)";
+ }
+}
+
+sub usage {
+ my $msg =shift;
+ my($progname) =shift;
+ print STDERR "Error! ".$msg;
+ print STDERR "usage :$progname [options]\n";
+ print STDERR " Options :\n";
+ print STDERR " [-h] this help\n";
+ print STDERR " -i input file\n";
+ print STDERR " -j input2 file (correspond.txt)\n";
+ print STDERR " -o output file\n";
+ print STDERR " -t data type: SNP or DNA\n";
+# ancienne option -t test: 0= mal-tem>seuil 1= seuil proportion0+/-sqr(pq/n)]
+ print STDERR " -p proportion of cases in the whole data set\n";
+ print STDERR " -e epsilon parameter\n";
+ print STDERR " [-g] name of the outgroup\n";
+ print STDERR " [-l] if -l is present, it forces the state of S to be ? for haplotypes carried by only one individual\n";
+}
+
+sub main
+{
+ my($progname);
+ my($seuil, $test, $proportion);
+
+ my %options= (
+ "first-input-file" => \$opt_i,
+ "second-input-file" => \$opt_j,
+ "output-file" => \$opt_o,
+ "epsilon" => \$opt_e,
+ "data-type" => \$opt_t,
+ "proportion" => \$opt_p,
+ "outgroup" => \$opt_g,
+ "low" => \$opt_l,
+ );
+
+ #getopts('ho:i:j:e:t:p:l');
+ GetOptions (\%options,
+ "version",
+ "short-help|h",
+ "help",
+ "man",
+ "first-input-file|i=s",
+ "second-input-file|j=s",
+ "output-file|o=s",
+ "epsilon|e=s",
+ "data-type|t=s",
+ "proportion|p=s",
+ "outgroup|g=s",
+ "low|l!",
+ ) or pod2usage(2);
+ if (defined($options{"version"})) {
+ print $0, " version ", $VERSION, "\n";
+ print "(Perl version ", $], ")\n";
+ exit 0;
+ }
+ if (defined($options{"short-help"})) {
+ pod2usage(-exitstatus => 0, -verbose => 0);
+ }
+ if (defined($options{"help"})) {
+ pod2usage(-exitstatus => 0, -verbose => 1);
+ }
+ if (defined($options{"man"})) {
+ pod2usage(-exitstatus => 0, -verbose => 2);
+ }
+
+ if ($opt_i) {
+ open(STDIN, '<', $opt_i) or die "Impossible to open $opt_i : $!" ;
+ }
+
+ my $correspond_name;
+ if ($opt_j) {
+ $correspond_name=$opt_j;
+ } else {
+ $correspond_name="correspond.txt"
+ }
+ if ($opt_o) {
+ open(STDOUT, '>', $opt_o) or die "Impossible to open $opt_o : $!" ;
+ }
+ if ($opt_e) {
+ $seuil=$opt_e;
+ } else {
+ usage("The epsilon parameter is not defined!!\n", $progname);
+ }
+ my($data_type);
+ if (defined($opt_t)) {
+ if ($opt_t =~ /[Dd][Nn][Aa]/) {
+ $data_type=1;
+ } elsif ($opt_t =~ /[Ss][Nn][Ps]/) {
+ $data_type=0;
+ } else {
+ usage("The data type (SNP or DNA) is missing\n", $progname);
+ }
+ # if (defined($opt_t)) {
+ # if ($opt_t==0) {
+ # $test=0;
+ # } elsif ($opt_t==1) {
+ # $test=1;
+ # } else {
+ # $test=-999;
+ # print STDERR "illegal value of opt_t\n";
+ # }
+ # } else {
+ # die "manque le numero du test: 0: mal-tem=seuil 1: seuil=P0+/-sqr(pq/n)!!\n";
+ # }
+ if ($opt_p) {
+ $proportion=$opt_p;
+ } else {
+ usage("The proportion of cases in the sample is missing!\n", $progname);
+ }
+ my($low);
+ # Si $low !=0, if only one case or one control, then the state of S is ?
+ if ($opt_l) {
+ $low=1;
+ } else {
+ $low=0;
+ }
+
+ my $outgroup="nooutgroup";
+ if ($opt_g) {
+ $outgroup = $opt_g;
+ }
+ travail($seuil, $data_type, $proportion, $low, $correspond_name, $outgroup);
+
+ }
+}
+
+
+main;
+
+__END__
+
+=head1 NAME
+
+altree-add-S - Title...
+
+=head1 SYNOPSIS
+
+altree-add-S [options]
+
+ Options:
+ --version program version
+ --short-help|h brief help message
+ --help help message with options descriptions
+ --man full documentation
+ --first-input-file|i input file 1
+ --second-input-file|j input file 2 nb cases/controls per haplotypes
+ --output-file|o output file
+ --epsilon|e epsilon value
+ --data-type|t data type: SNP or DNA
+ --proportion|p proportion of cases in the sample
+ --ancestor|a name of ancestral haplotype
+ [--outgroup|g] name of the outgroup
+ [--low|l] disease statut for haplotype carried by one individual
+
+
+=head1 OPTIONS
+
+=over 8
+
+=item B<--version>
+
+Print the program version and exits.
+
+=item B<--short-help>
+
+Print a brief help message and exits.
+
+=item B<--help>
+
+Print a help message with options descriptions and exits.
+
+=item B<--man>
+
+Prints the manual page and exits.
+
+=item B<--first-input-file|i>
+
+Input file 1 (paup or phylip file)
+
+=item B<--second-input-file|j>
+
+Input file 2, contains the number of times a given haplotypes is carried by case and control individuals
+
+=item B<--output-file|o>
+
+Output file
+
+=item B<--epsilon|e>
+
+espilon parameter (see formula in the documentation)
+
+=item B<--data-type|t>
+
+Type of data: DNA (ATGCU) or SNP (0-1)
+
+=item B<--proportion|p>
+
+Proportion of case individuals in the sample
+
+=item B<--outgroup|g>
+
+Name of the outgroup (if it is not in the file containing the number of cases and controls per haplotype)
+
+=item B<--low|l>
+
+If this option is present, it forces the state of the character S to be "?" for haplotypes carried by only one individual
+
+=back
+
+=head1 DESCRIPTION
+
+B<This program> adds a new character (called "character S") to each haplotype in the input file according to the number of cases and controls carrying it.
+
+=cut
diff --git a/trunk/altree-convert b/trunk/altree-convert
new file mode 100755
index 0000000000000000000000000000000000000000..6ffc693eacf4feb62359379d94431619050bc7fb
--- /dev/null
+++ b/trunk/altree-convert
@@ -0,0 +1,646 @@
+#! /usr/bin/perl
+# This program trasforms output files from different haplotype reconstructions programs (Phase, FAMHAP, ...) into input files for phylogeny reconstruction programs (PAUP or Phylip)
+
+use strict;
+use diagnostics;
+use warnings;
+use Getopt::Long; # qw(:config permute);
+use Pod::Usage;
+#use Getopt::Std;
+
+our($opt_h, $opt_r, $opt_i, $opt_j, $opt_o, $opt_t, $opt_p, $opt_c);
+
+our $VERSION;
+$VERSION = sprintf "0.%03d", q$Revision$ =~ /(\d+)/g;
+
+
+##### FONCTIONS ANNEXES GLOBALES POUR TOUS LES INPUTS ####
+
+sub print_hash_ind
+{
+ my($hash_ind)=shift;
+ my($clef);
+ print "AFFICHAGE\n";
+ foreach $clef (keys %{$hash_ind}) {
+ print $clef ," ", $hash_ind->{$clef}->{"statut"}, " ", $hash_ind->{$clef}->{"haplo1"}, " ", $hash_ind->{$clef}->{"haplo2"}, "\n";
+ }
+}
+
+#Verification that
+# - the hash contains 2 haplo per individual
+# - the statut is defined
+sub VerifyHashInd
+{
+ my($hash_ind)=shift;
+ my($nb_loci)=shift;
+ my($ind);
+
+ foreach $ind (keys %{$hash_ind}) {
+ if ((!exists $hash_ind->{$ind}->{"statut"}) && (!$opt_j)) {
+ die "Statut are not available in the input file: You should either provide a second input file (option -j ) or add it in the input file of phase and use the -c-1 option of phase";
+ } elsif ((!exists $hash_ind->{$ind}->{"haplo1"})
+ || (!exists $hash_ind->{$ind}->{"haplo2"})) {
+ die "Undefined haplotypes for individual $ind\n";
+ } elsif ((length($hash_ind->{$ind}->{"haplo1"}) != $nb_loci)
+ || (length($hash_ind->{$ind}->{"haplo2"}) != $nb_loci)) {
+ my($long)=length($hash_ind->{$ind}->{"haplo1"});
+ die "$nb_loci, $long, Bad haplotype sequence length for individual: $ind\n";
+ }
+ }
+}
+
+############################
+
+##### READ PHASE OUTPUT #####
+
+#Read information in the phase outfile (option -c)
+#The info are stored in a hash{num_ind}->{"info"}
+# (info=statut[if available], haplo1, haplo2)
+
+sub ReadPhase
+{
+ my($file)=shift;
+ # Do we have to read statut in INPUT1 or not (use INPUT2)?
+ my($read_statut)=shift;
+
+ my($mark)=0;
+ my(%hash_ind);
+ my($passe_par_la)=0; #indicates if a section is read in the input file
+ my($ligne, $nb_loci);
+ my($file_has_statut)=0; #=1 when we are sure that info about statut are in the file
+
+ open(INPUT1, '<', $file) || die "Unable to open '$file': $!\n";
+
+ while ($ligne=<INPUT1>) {
+ chomp($ligne);
+ if ($ligne =~ /^BEGIN (OUTFILE_LIST|BESTPAIRS1|INPUT_SUMMARY)$/) {
+ if ($mark != 0) {
+ die "Nested sections ! \n";
+ }
+ if ($1 eq "OUTFILE_LIST") {
+ $mark=2;
+ } elsif ($1 eq "INPUT_SUMMARY") {
+ $mark=3;
+ } else {
+ $mark=1;
+ }
+ if ($passe_par_la & (1<<($mark-1)) ) {
+ die "Double section 'BEGIN $1' !\n";
+ }
+ $passe_par_la |= (1<<($mark-1));
+ next;
+ }
+ if ($ligne =~ /^END (OUTFILE_LIST|BESTPAIRS1|INPUT_SUMMARY)$/) {
+ if ($mark == 0) {
+ die "Section $1 ends before start ! \n";
+ }
+ $mark=0;
+ next;
+ }
+ if ($mark==1) {
+ my ($ligne2, $ligne3, $statut, $ind);
+ if ($ligne !~ /^([01])\s+([0-9A-Za-z\#_-]+)$/) {
+ print STDERR "Skipping strange line : $ligne\n";
+ } else {
+ $statut=$1;
+ $ind=$2;
+ my $i;
+ for ($i=1; $i<=2; $i++) {
+ $ligne2=<INPUT1>;
+ chomp($ligne2);
+ $ligne2 =~ tr/()[] //d; # faire aussi un s/(-1)/?/;
+ $ligne2 =~ s/-1/?/g;
+ $hash_ind{$ind}->{"haplo".$i}=$ligne2;
+ }
+ if ($read_statut) {
+ $hash_ind{$ind}->{"statut"}=$statut;
+ }
+ }
+ }
+ if ($mark==2) {
+ if ($ligne =~ / : p-value for testing cases vs controls$/) {
+ $file_has_statut=1;
+ }
+ }
+ if ($mark==3){
+ if ($ligne =~ /^Number of Loci: ([0-9]+)$/) {
+ $nb_loci=$1;
+ }
+ }
+ }
+ close(INPUT1);
+
+ if ($passe_par_la != 7) {
+ print "PASSE PAR LA=$passe_par_la \n";
+ die "The program has either read too many sections or not enough!\n";
+ }
+ if ($file_has_statut == 0 && $read_statut == 1) {
+ die "Statut are not available in the input file: You should either provide a second input file (option -j ) or add it in the input file of phase and use the -c-1 option of phase"
+ }
+ if (%hash_ind) { #not empty
+ return \%hash_ind, $nb_loci;
+ } else {
+ die "Error in reading Input 1: info have not been stored correctly in the hash. Check your input file?\n";
+ }
+}
+
+#To add statut info in the hash when it's not available in INPUT1
+sub ReadStatut
+{
+ my ($file)=shift;
+ my ($hash_ind)=shift;
+ my(@tableau, $ligne);
+
+ open(INPUT2, '<', $file) || die "Unable to open '$file': $!\n";
+
+ while ($ligne=<INPUT2>) {
+ chomp($ligne);
+ @tableau=split(/\s+/, $ligne);
+ if (!exists($hash_ind->{$tableau[0]})) {
+ die "This individual doesn't exist in $opt_i: $tableau[0] !\n";
+ }
+ $hash_ind->{$tableau[0]}->{"statut"}=$tableau[1];
+ }
+
+ close(INPUT2);
+
+ my($ind);
+ foreach $ind (keys %{$hash_ind}) {
+ if (!exists($hash_ind->{$tableau[0]}->{"statut"})) {
+ die "No statut was found for individual $ind !\n";
+ }
+ }
+}
+
+##########################################
+
+#### READ FAMHAP OUTPUT ##################
+#Read information in the FAMHAP outfile ( outfile=file1)
+#The info are stored in a hash{haploID}=haplotype_sequence
+sub ReadFAMHAPOutfile
+{
+ my($file1)=shift;
+ my($ligne, , $ligne2, @tableau, %hashHaploID);
+ my($haplo, $HaploID);
+ my($nb_loci, $nb_haplo);
+
+ open(FAMHAPOUT, '<', $file1) || die "Unable to open '$file1': $!\n";
+
+ while ($ligne=<FAMHAPOUT>) {
+ chomp($ligne);
+ if ($ligne =~ /^Selected loci:/) {
+ chomp($ligne);
+ @tableau=split(/\s+/, $ligne);
+ $nb_loci=$#tableau-1;
+ }
+ if ($ligne =~ /HaploiD: ([0-9]+)/) {
+ $HaploID=$1;
+ @tableau=split(/\s+/, $ligne);
+ $haplo="";
+ my($i);
+ if (not defined $nb_loci) {
+ die "Problem in the input file: nb_loci could not be read: $nb_loci\n";
+ } else {
+ for ($i=0; $i<$nb_loci; $i++) {
+ $haplo.=$tableau[$i];
+ # Je ne vérifie pas que les alleles font bien un seul
+ # caractère (une seuk chiffre ou une seule lettre...
+ }
+ }
+ #hash dont clef=HaploID, et valeur = la seq de l'haplotype
+ if ($HaploID ne "") {
+ $hashHaploID{$HaploID}=$haplo;
+ #DEBUG print "haplo=$haplo, hashHaploID=$HaploID hashHaploID{haplo}= $hashHaploID{$HaploID}\n";
+ } else {
+ die "Problem in the input file, HaploID could not be correctly read: $HaploID\n";
+ }
+ }
+ }
+ close(FAMHAPOUT);
+ return (\%hashHaploID, $nb_loci);
+}
+
+#Read information in the FAMHAP Hx_MOSTLIKELI (file2)
+#uses the hashHaploID
+sub ReadFAMHAPMostLikeli
+{
+ my($file2)=shift;
+ my($hashHaploID)=shift;
+ my($ligne, $FT, $FID, $FNT, $MT, $MNT);
+ my(%hash_ind);
+
+ open(OUTHAPLO, '<', $file2) || die "Unable to open '$file2': $!\n";
+ my($index)=0;
+ while ($ligne=<OUTHAPLO>) {
+ chomp($ligne);
+ if ($ligne =~ /^\s*FID\s+PID\s+HAPLO1\s+HAPLO2\s+HAPLO3\s+HAPLO4\s+LIKELIHOOD_WEIGHT/) {
+ $index=1;
+ next;
+ }
+ if ($index==1) {
+ if ($ligne =~ /^\s*(\d+)\s+(.+)\s+(\d+)\s+(\d+)\s+(\d+)\s+(\d+)\s+(.+)/) {
+ $FID=$1;
+ $FT=$3;
+ $FNT=$4;
+ $MT=$5;
+ $MNT=$6;
+ # print "hashHaploID3= $hashHaploID->{$3}\n";
+ $hash_ind{$FID."0"}->{"haplo1"}=$hashHaploID->{$FNT};
+ $hash_ind{$FID."0"}->{"haplo2"}=$hashHaploID->{$MNT};
+ $hash_ind{$FID."0"}->{"statut"}=0;
+ $hash_ind{$FID."1"}->{"haplo1"}=$hashHaploID->{$FT};
+ $hash_ind{$FID."1"}->{"haplo2"}=$hashHaploID->{$MT};
+ $hash_ind{$FID."1"}->{"statut"}=1;
+ } elsif ($ligne =~ /^$/) {
+ next;
+ } else {
+ print "strange line $ligne\n";
+ }
+ }
+ }
+ close(OUTHAPLO);
+ return(\%hash_ind);
+}
+
+
+
+
+# call the different function involved in the reading of FAMHAP input file and storage of the infoin a hash{num_ind}->{"info"} (info=statut[if available], haplo1, haplo2)
+sub ReadFAMHAP
+{
+ my($file1)=shift;
+ my($file2)=shift;
+ my($hashHaploID, $hash_ind);
+ my($haplo);
+ my($nb_loci);
+ ($hashHaploID, $nb_loci)=ReadFAMHAPOutfile($file1);
+ ($hash_ind)= ReadFAMHAPMostLikeli($file2, $hashHaploID);
+#print "nb_haplo= $nb_haplo, nb_loci=$nb_loci\n";
+ # foreach $haplo (keys %{$hashHaploID}) {
+ # print "haplo: $haplo hash=$hashHaploID->{$haplo}\n";
+ # }
+ # print_hash_ind($hash_ind);
+ return($hash_ind, $nb_loci);
+}
+
+##########################################
+
+#### DATA TRANSFO ########################
+sub TransfoData
+{
+ my($hash_ind)=shift;
+ my($j)=1;
+ my($ind, %hash_haplo);
+
+
+ foreach $ind (keys %{$hash_ind}) {
+ if (($hash_ind->{$ind}->{"statut"} != 0) && ($hash_ind->{$ind}->{"statut"} !=1)) {
+ die "Invalid disease statut for individual $ind: ", $hash_ind->{$ind}->{"statut"}, "\n";
+ } else {
+ my($i);
+ for ($i=1; $i<=2; $i++) {
+ $hash_haplo{$hash_ind->{$ind}->{"haplo".$i}}->[$hash_ind->{$ind}->{"statut"}]++;
+ $hash_haplo{$hash_ind->{$ind}->{"haplo".$i}}->[0]+=0; # moche mais pour eviter les non défini dans affichage
+ $hash_haplo{$hash_ind->{$ind}->{"haplo".$i}}->[1]+=0;
+
+ if (!exists $hash_haplo{$hash_ind->{$ind}->{"haplo".$i}}->[2]) {
+ $hash_haplo{$hash_ind->{$ind}->{"haplo".$i}}->[2]=$j;
+ $j++;
+ }
+ }
+ }
+
+ }
+ my($nb_haplo);
+ $nb_haplo=keys %hash_haplo;
+ # print "Nb_haplo= $nb_haplo\n";
+ return \%hash_haplo, $nb_haplo;
+}
+###########################################
+
+#### BUILDING OF DIFFERENT OUTPUT FILE ####
+
+#Affiche juste les haplo. Surtout pour debug
+sub AfficheHashHaplo
+{
+ my($hash_haplo)=shift;
+ my($haplo);
+ foreach $haplo (keys %{$hash_haplo}) {
+ printf "H%.3i_c%.3i_m%.3i\t%s\n", $hash_haplo->{$haplo}->[2],$hash_haplo->{$haplo}->[0], $hash_haplo->{$haplo}->[1], $haplo;
+# print "hash_haplo->{$haplo}->[1]", $hash_haplo->{$haplo}->[1], "\n";
+ }
+}
+
+
+# Prepare a file (correspond.txt) in which the number of cases and the number of controls are specified for each haplotype.
+sub MakeCorrespondanceFile
+{
+ my($hash_haplo)=shift;
+ my($file_corres)=shift;
+ my($haplo);
+ open (CORRESP, '>', $file_corres) || die "Unable to open correspond.txt: $!\n";
+ foreach $haplo (keys %{$hash_haplo}) {
+ printf CORRESP "H%.3i\tm%.3i\tc%.3i\n", $hash_haplo->{$haplo}->[2],$hash_haplo->{$haplo}->[1], $hash_haplo->{$haplo}->[0];
+ }
+ close(CORRESP);
+}
+
+
+
+# Read the opt_t and define the character to add to the ancestral sequence ($anc) and to the other haplotypes ($der). Also define the "format symbol for paup.
+sub ReadDataType
+{
+ my($data_type)=shift;
+# my ($der, $anc);
+ my($write_data_type);
+ if ($data_type eq "DNA") {
+ $write_data_type="ATGCU";
+# $anc="G";
+# $der="C";
+ } elsif ($data_type eq "NUM") {
+ $write_data_type="0123456789";
+# $anc="1";
+# $der="0";
+ } else {
+ die "Invalid data type specified in opt_t: $opt_t. You should use DNA or NUM\n";
+ }
+ return ($write_data_type);
+# return ($anc, $der, $write_data_type);
+}
+
+
+
+#Build a PAUP OUTFILE
+sub BuildPAUP
+{
+ my($file)=shift;
+ my($hash_haplo)=shift;
+ my($nb_haplo)=shift;
+ my($nb_loci)=shift;
+ my($data_type)=shift;
+ my($file_corres)= shift;
+ # my($der, $anc);
+ my($write_data_type);
+
+ MakeCorrespondanceFile($hash_haplo, $file_corres);
+ #($anc, $der, $write_data_type)=ReadDataType($data_type);
+ ($write_data_type)=ReadDataType($data_type);
+ open(OUTPAUP, '>', $file) || die "Unable to open '$file': $!\n";
+ print OUTPAUP "#Nexus\n";
+ print OUTPAUP "Begin data;\n";
+ print OUTPAUP "dimension ntax=",$nb_haplo+1," nchar=", $nb_loci,";\n";
+ print OUTPAUP "format symbols=\"$write_data_type\" missing=?;\n";
+ print OUTPAUP "matrix\n";
+ my($haplo);
+ foreach $haplo (keys %{$hash_haplo}) {
+# printf OUTPAUP "H%.3i_m%.3i_c%.3i\t%s%s\n", $hash_haplo->{$haplo}->[2],$hash_haplo->{$haplo}->[1], $hash_haplo->{$haplo}->[0], $haplo, $der; # a modifier si je fais un deuxième fichier de sortie...
+ printf OUTPAUP "H%.3i\t%s\n", $hash_haplo->{$haplo}->[2], $haplo;#, $der;
+ }
+ print OUTPAUP "H000_ancetre [add ancestral haplotype]\n";#$anc\n";
+ print OUTPAUP ";\n";
+ print OUTPAUP "end;\n";
+ print OUTPAUP "begin assumptions;\n";
+ print OUTPAUP "ancstates *anc vector = [add ancestral haplotype];\n";
+ print OUTPAUP "end;\n";
+ print OUTPAUP "begin paup;\n";
+ print OUTPAUP "set nowarnreset autoclose maxtrees = [2000] increase=[no - Auto AutoInc = 100] monitor = no taxlabels = full\n";
+ print OUTPAUP "root=lundberg warnroot=no opt=[deltran - acctran] ancstates=anc;\n";
+ print OUTPAUP "hsearch;\n";
+ print OUTPAUP "savetrees [from=1 to=1] file=[test.tree] root=yes format=altnexus;\n";
+ print OUTPAUP "cleartrees nowarn=yes;\n";
+ print OUTPAUP "gettrees rooted=yes file=[test.tree];\n";
+ print OUTPAUP "log file = [test.res.log] replace=[yes - no];\n";
+ print OUTPAUP "describetrees [all] /plot=[cladogram - phylogram] brlens=yes rootmethod=lundberg apolist=yes;\n";
+ print OUTPAUP "log stop;\n";
+ print OUTPAUP "end;\n";
+ print OUTPAUP "quit;\n";
+ print OUTPAUP "[WARNING, this file is designed for bi-allelic data. If it is not the case, you may have to modify this input file, for example by specifying the ordered option in the typeset command in the assumption block]\n";
+ close(OUTPAUP);
+
+}
+
+#Build a PHYLIP OUTFILE
+sub BuildPHYLIP
+{
+ my ($file)=shift;
+ my($hash_haplo)=shift;
+ my($nb_haplo)=shift;
+ my($nb_loci)=shift;
+ my($data_type)=shift;
+ my($file_corres)=shift;
+ # my ($der, $anc);
+ my($write_data_type);
+
+#### SI ON UTILISE PHYLIP? FAIRE UN TEST: on doit avoir du 0/1 ou du ATGCU... SInon, marche pas!
+
+
+ MakeCorrespondanceFile($hash_haplo, $file_corres);
+# ($anc, $der, $write_data_type)=ReadDataType($data_type);
+ ($write_data_type)=ReadDataType($data_type);
+ open(OUTPHYLIP, '>', $file) || die "Unable to open '$file': $!\n";
+ print OUTPHYLIP "\t", $nb_haplo+1, "\t", $nb_loci+1, "\n";
+ my($haplo);
+ foreach $haplo (keys %{$hash_haplo}) {#### SI ON UTILISE PHYLIP? FAIRE UN TEST: on doit avoir du 0/1 ou du ATGCU... SInon, marche pas!
+ printf OUTPHYLIP "H%.3i%s\t%s\n", $hash_haplo->{$haplo}->[2]," ", $haplo;#, $der;
+ }
+ # print OUTPHYLIP "H000_anc ", "\t", "[ancestral sequence]\n";#$anc\n";
+ close(OUTPHYLIP);
+ # print STDERR "Don't forget to prepare the ancestor file containing the ancestor sequence followed by the character $anc\n";
+}
+############################################
+
+
+sub main
+{
+ my($progname, $rec_program);
+ my %options= (
+ "first-input-file" => \$opt_i,
+ "second-input-file" => \$opt_j,
+ "output-file" => \$opt_o,
+ "case-control-output" => \$opt_c,
+ "data-type" => \$opt_t,
+ "phylo-prog" => \$opt_p,
+ "reconstruct-prog" => \$opt_r,
+ );
+
+ #getopts('hr:i:j:o:t:p:');
+ GetOptions (\%options,
+ "version",
+ "short-help|h",
+ "help",
+ "man",
+ "first-input-file|i=s",
+ "second-input-file|j=s",
+ "output-file|o=s",
+ "case-control-output|c=s",
+ "data-type|t=s",
+ "phylo-prog|p=s",
+ "reconstruct-prog|r=s",
+ ) or pod2usage(2);
+ if (defined($options{"version"})) {
+ print $0, " version ", $VERSION, "\n";
+ print "(Perl version ", $], ")\n";
+ exit 0;
+ }
+ if (defined($options{"short-help"})) {
+ pod2usage(-exitstatus => 0, -verbose => 0);
+ }
+ if (defined($options{"help"})) {
+ pod2usage(-exitstatus => 0, -verbose => 1);
+ }
+ if (defined($options{"man"})) {
+ pod2usage(-exitstatus => 0, -verbose => 2);
+ }
+
+
+# if ($opt_h) {
+# ($progname = $0) =~ s|^.*/([^/]*)$|$1|;
+# print STDERR "usage : $progname \n";
+# print STDERR "\t-r Haplotype reconstruction program\n";
+# print STDERR "\t-i Input file 1\n";
+# print STDERR "\t[-j Input file 2]\n";
+# print STDERR "\t-o Output file \n";
+# print STDERR "\t-t Type of data: DNA (ATGCU) or NUM (0-9)\n";
+# print STDERR "\t-p Phylogeny reconstruction program\n";
+# print STDERR "\t-h: this help\n";
+# exit (1);
+# }
+ if ($opt_r){
+ $rec_program = $opt_r;
+ } else {
+ die "Name of the haplotype reconstruction program used missing: opt_r\n";
+ }
+ if (!$opt_i) { # Principal outfile of haplotypic reconstruction program
+ die "No input file\n";
+ }
+ if (!$opt_o) { # Output file for a phylogeny reconstruction program
+ die "No output file\n";
+ }
+ if (!$opt_c) { # Output file for a phylogeny reconstruction program
+ die "No case-control statut output file\n";
+ }
+ my($phylo_program);
+ if ($opt_p){
+ $phylo_program = $opt_p;
+ } else {
+ die "Name of the phylogeny reconstruction program used missing: opt_p\n";
+ }
+ if (!$opt_t){
+ die "Type of data: opt_t (DNA or NUM) not specified!\n"; #il faudra peut-etre vérifier que les données sont bien du bon type???
+ }
+
+ my($hash_ind, $hash_statut, $hash_haplo);
+ my($nb_haplo, $nb_loci);
+
+ if ($rec_program =~ /^[Pp][Hh][Aa][Ss][Ee]$/) {
+ ($hash_ind, $nb_loci)=ReadPhase($opt_i, !$opt_j);
+ VerifyHashInd($hash_ind, $nb_loci);
+ if ($opt_j) {
+ ReadStatut($opt_j, $hash_ind);
+ }
+ } elsif ($rec_program =~ /^[Ff][Aa][Mm][Hh][Aa][Pp]$/) {
+ if (!$opt_j) {
+ die "No file H1_MOSTLIKELI or H0_MOSTLIKELI provided\n";
+ } else {
+ ($hash_ind, $nb_loci)=ReadFAMHAP($opt_i, $opt_j);
+ VerifyHashInd($hash_ind, $nb_loci);
+ }
+ } else {
+ die "Unknown software. Check the -r option! \n";
+ }
+
+ #print_hash_ind($hash_ind);
+
+ ($hash_haplo, $nb_haplo)=TransfoData($hash_ind);
+ # AfficheHashHaplo($hash_haplo); # pour verifier
+
+ if ($phylo_program =~ /^[Pp][Aa][Uu][Pp]$/) {
+ BuildPAUP($opt_o, $hash_haplo, $nb_haplo, $nb_loci, $opt_t, $opt_c)
+ } elsif ($phylo_program =~ /^[Pp][Hh][Yy][Ll][Ii][Pp]$/) {
+ BuildPHYLIP($opt_o, $hash_haplo, $nb_haplo, $nb_loci, $opt_t, $opt_c);
+ } else {
+ die "Unknown phylogeny software. Check the -p option! \n";
+ }
+
+}
+
+main;
+
+__END__
+
+=head1 NAME
+
+altree-convert - Title...
+
+=head1 SYNOPSIS
+
+altree-convert [options]
+
+ Options:
+ --version program version
+ --short-help|h brief help message
+ --help help message with options descriptions
+ --man full documentation
+ --first-input-file|i input file 1
+ --second-input-file|j input file 2 (not mandatory)
+ --output-file|o output file
+ --case-control-output|c output containing the nb cases/controls
+ --data-type|t DNA|SNP
+ --phylo-prog|p PAUP|PHYLIP
+ --reconstruct-prog|r PHASE|FAMHAP
+
+=head1 OPTIONS
+
+=over 8
+
+=item B<--version>
+
+Print the program version and exits.
+
+=item B<--short-help>
+
+Print a brief help message and exits.
+
+=item B<--help>
+
+Print a help message with options descriptions and exits.
+
+=item B<--man>
+
+Prints the manual page and exits.
+
+=item B<--first-input-file|i>
+
+Input file 1 (output of the haplotype reconstruction program)
+
+=item B<--second-input-file|j>
+
+Input file 2 (second output of famhap or file containig the disease status)
+
+=item B<--output-file|o>
+
+Output file
+
+=item B<--case-control-output|c>
+
+Output file containing the number of cases and controls carrying each haplotype
+
+=item B<--data-type|t> C<DNA>|C<SNP>
+
+Type of data: DNA (ATGCU) or SNP (0-1)
+
+=item B<--phylo-prog|p> C<phylip>|C<paup>
+
+Phylogeny reconstruction program
+
+=item B<reconstruct-prog|r> C<famhap|phase>
+
+Haplotype reconstruction program
+
+=back
+
+=head1 DESCRIPTION
+
+B<This program> will read the given input file(s) and generate an input file for the phylogenetic reconstruction software paup or phylip/paml
+
+=cut
diff --git a/trunk/t/ALTree.t b/trunk/t/ALTree.t
new file mode 100644
index 0000000000000000000000000000000000000000..6a96ae3702d942f083e05f750ce2a844c783f322
--- /dev/null
+++ b/trunk/t/ALTree.t
@@ -0,0 +1,15 @@
+# Before `make install' is performed this script should be runnable with
+# `make test'. After `make install' it should work as `perl ALTree.t'
+
+#########################
+
+# change 'tests => 1' to 'tests => last_test_to_print';
+
+use Test::More tests => 1;
+BEGIN { use_ok('ALTree::Import') };
+
+#########################
+
+# Insert your test code below, the Test::More module is use()ed here so read
+# its man page ( perldoc Test::More ) for help writing this test script.
+
diff --git a/trunk/test/create_file/paup_file/caco.phase b/trunk/test/create_file/paup_file/caco.phase
new file mode 100644
index 0000000000000000000000000000000000000000..3b9e4ecbe8e0757b7b598e2c245a8a6fc073f6f5
--- /dev/null
+++ b/trunk/test/create_file/paup_file/caco.phase
@@ -0,0 +1,604 @@
+200
+12
+P 293 693 2319 2346 3697 3727 3848 4329 4384 4553 6297 6760
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diff --git a/trunk/test/create_file/paup_file/caco.phase.out b/trunk/test/create_file/paup_file/caco.phase.out
new file mode 100644
index 0000000000000000000000000000000000000000..157206c6c0aa13ef5e3a9f532c20c12c28b8e798
--- /dev/null
+++ b/trunk/test/create_file/paup_file/caco.phase.out
@@ -0,0 +1,1674 @@
+*************************************************************
+**** ****
+**** Output from PHASE v2.0.2 ****
+**** Code by M Stephens, with contributions from N Li ****
+**** ****
+*************************************************************
+
+BEGIN COMMAND_LINE
+/home/cbardel/phase/phase.2.0.2.linux/PHASE -c-1 caco.phase caco.phase.out 100 1 100
+END COMMAND_LINE
+
+BEGIN OUTFILE_LIST
+caco.phase.out_freqs : haplotype frequency estimates
+caco.phase.out_pairs : most likely haplotype pairs for each individual
+caco.phase.out_recom : estimates of recombination parameters
+caco.phase.out_signif : p-value for testing cases vs controls
+caco.phase.out_monitor : file for monitoring convergence
+END OUTFILE_LIST
+
+BEGIN INPUT_SUMMARY
+Number of Individuals: 200
+Number of Loci: 12
+Positions of loci: 293 693 2319 2346 3697 3727 3848 4329 4384 4553 6297 6760
+END INPUT_SUMMARY
+
+List of haplotypes found in best reconstruction, with counts.
+(See file caco.phase.out_freqs for haplotype population frequency estimates)
+
+BEGIN LIST_SUMMARY
+ 1 222222222222 224.000000
+ 2 222221122222 6.000000
+ 3 222221111122 6.000000
+ 4 222221111121 20.000000
+ 5 222221111112 5.000000
+ 6 222212222222 12.000000
+ 7 221222222221 14.000000
+ 8 221122222222 11.000000
+ 9 112222222222 20.000000
+ 10 112221112222 6.000000
+ 11 112221112112 11.000000
+ 12 112221111122 14.000000
+ 13 112221111121 10.000000
+ 14 112221111112 41.000000
+END LIST_SUMMARY
+
+
+Summary of best reconstruction
+(numbers refer to the list of haplotypes given above)
+
+BEGIN BESTPAIRS_SUMMARY
+1: (1,1)
+2: (1,1)
+3: (1,13)
+4: (1,6)
+5: (3,14)
+6: (1,1)
+7: (1,11)
+8: (1,1)
+9: (1,14)
+10: (1,14)
+11: (11,14)
+12: (1,14)
+13: (1,9)
+14: (1,14)
+15: (1,2)
+16: (9,14)
+17: (1,9)
+18: (1,1)
+19: (1,9)
+20: (1,6)
+21: (9,10)
+22: (4,14)
+23: (1,4)
+24: (6,14)
+25: (1,14)
+26: (1,14)
+27: (1,11)
+28: (1,1)
+29: (1,12)
+30: (1,10)
+31: (1,3)
+32: (8,9)
+33: (1,14)
+34: (1,14)
+35: (11,12)
+36: (1,1)
+37: (1,13)
+38: (1,12)
+39: (1,3)
+40: (7,14)
+41: (1,1)
+42: (1,7)
+43: (4,11)
+44: (1,1)
+45: (1,11)
+46: (1,9)
+47: (13,13)
+48: (1,1)
+49: (1,14)
+50: (1,14)
+51: (1,8)
+52: (1,13)
+53: (1,1)
+54: (1,4)
+55: (1,14)
+56: (1,10)
+57: (7,14)
+58: (3,12)
+59: (2,10)
+60: (1,11)
+61: (1,1)
+62: (1,6)
+63: (1,1)
+64: (1,14)
+65: (1,1)
+66: (4,7)
+67: (1,9)
+68: (1,14)
+69: (1,1)
+70: (13,14)
+71: (1,7)
+72: (1,6)
+73: (1,1)
+74: (1,1)
+75: (6,6)
+76: (4,5)
+77: (1,1)
+78: (1,1)
+79: (11,14)
+80: (12,14)
+81: (1,7)
+82: (1,8)
+83: (1,14)
+84: (4,11)
+85: (1,9)
+86: (1,14)
+87: (1,7)
+88: (1,3)
+89: (1,8)
+90: (1,1)
+91: (9,12)
+92: (14,14)
+93: (8,13)
+94: (1,9)
+95: (1,13)
+96: (1,14)
+97: (1,1)
+98: (1,12)
+99: (1,12)
+100: (1,1)
+101: (1,1)
+102: (1,8)
+103: (1,1)
+104: (1,14)
+105: (1,1)
+106: (1,4)
+107: (1,12)
+108: (1,4)
+109: (1,1)
+110: (1,12)
+111: (1,4)
+112: (1,5)
+113: (1,8)
+114: (1,1)
+115: (1,9)
+116: (4,8)
+117: (1,1)
+118: (1,1)
+119: (1,10)
+120: (1,2)
+121: (1,1)
+122: (1,1)
+123: (4,4)
+124: (1,5)
+125: (1,9)
+126: (1,1)
+127: (9,12)
+128: (1,14)
+129: (1,2)
+130: (1,1)
+131: (1,6)
+132: (1,1)
+133: (1,1)
+134: (1,1)
+135: (4,4)
+136: (1,1)
+137: (1,8)
+138: (1,4)
+139: (1,13)
+140: (1,3)
+141: (1,1)
+142: (1,2)
+143: (1,1)
+144: (1,7)
+145: (1,7)
+146: (1,1)
+147: (1,6)
+148: (1,4)
+149: (1,10)
+150: (1,1)
+151: (1,6)
+152: (1,12)
+153: (5,7)
+154: (1,1)
+155: (1,1)
+156: (1,9)
+157: (1,1)
+158: (1,11)
+159: (1,5)
+160: (1,1)
+161: (1,14)
+162: (1,1)
+163: (1,7)
+164: (1,7)
+165: (1,9)
+166: (1,1)
+167: (1,8)
+168: (1,14)
+169: (1,4)
+170: (1,1)
+171: (9,12)
+172: (1,2)
+173: (1,1)
+174: (1,7)
+175: (1,1)
+176: (1,14)
+177: (1,1)
+178: (1,1)
+179: (1,1)
+180: (1,12)
+181: (1,6)
+182: (1,1)
+183: (1,4)
+184: (14,14)
+185: (1,7)
+186: (6,9)
+187: (1,1)
+188: (1,11)
+189: (4,14)
+190: (8,14)
+191: (1,14)
+192: (1,1)
+193: (1,1)
+194: (1,14)
+195: (1,14)
+196: (1,9)
+197: (1,9)
+198: (13,14)
+199: (1,1)
+200: (1,1)
+END BESTPAIRS_SUMMARY
+
+
+Haplotype estimates for each individual, with uncertain phases enclosed in ()
+and uncertain genotypes enclosed in []:
+
+BEGIN BESTPAIRS1
+1 1
+2 2 2 2 2 2 2 2 2 2 2 2
+2 2 2 2 2 2 2 2 2 2 2 2
+1 2
+2 2 2 2 2 2 2 2 2 2 2 2
+2 2 2 2 2 2 2 2 2 2 2 2
+1 3
+(2) (2) 2 2 2 2 2 2 2 2 2 2
+(1) (1) 2 2 2 1 1 1 1 1 2 1
+1 4
+2 2 2 2 2 2 2 2 2 2 2 2
+2 2 2 2 1 2 2 2 2 2 2 2
+1 5
+2 2 2 2 2 1 1 1 1 1 (2) 2
+1 1 2 2 2 1 1 1 1 1 (1) 2
+1 6
+2 2 2 2 2 2 2 2 2 2 2 2
+2 2 2 2 2 2 2 2 2 2 2 2
+1 7
+2 2 2 2 2 2 2 2 2 2 2 2
+1 1 2 2 2 1 1 1 2 1 1 2
+1 8
+2 2 2 2 2 2 2 2 2 2 2 2
+2 2 2 2 2 2 2 2 2 2 2 2
+1 9
+2 2 2 2 2 2 2 2 2 2 2 2
+1 1 2 2 2 1 1 1 1 1 1 2
+1 10
+2 2 2 2 2 2 2 2 2 2 2 2
+1 1 2 2 2 1 1 1 1 1 1 2
+1 11
+1 1 2 2 2 1 1 1 2 1 1 2
+1 1 2 2 2 1 1 1 1 1 1 2
+1 12
+2 2 2 2 2 2 2 2 2 2 2 2
+1 1 2 2 2 1 1 1 1 1 1 2
+1 13
+2 2 2 2 2 2 2 2 2 2 2 2
+1 1 2 2 2 2 2 2 2 2 2 2
+1 14
+2 2 2 2 2 2 2 2 2 2 2 2
+1 1 2 2 2 1 1 1 1 1 1 2
+1 15
+2 2 2 2 2 2 2 2 2 2 2 2
+2 2 2 2 2 1 1 2 2 2 2 2
+1 16
+1 1 2 2 2 2 2 2 2 2 2 2
+1 1 2 2 2 1 1 1 1 1 1 2
+1 17
+2 2 2 2 2 2 2 2 2 2 2 2
+1 1 2 2 2 2 2 2 2 2 2 2
+1 18
+2 2 2 2 2 2 2 2 2 2 2 2
+2 2 2 2 2 2 2 2 2 2 2 2
+1 19
+2 2 2 2 2 2 2 2 2 2 2 2
+1 1 2 2 2 2 2 2 2 2 2 2
+1 20
+2 2 2 2 2 2 2 2 2 2 2 2
+2 2 2 2 1 2 2 2 2 2 2 2
+1 21
+1 1 2 2 2 2 2 2 2 2 2 2
+1 1 2 2 2 1 1 1 2 2 2 2
+1 22
+2 2 2 2 2 1 1 1 1 1 2 1
+1 1 2 2 2 1 1 1 1 1 1 2
+1 23
+2 2 2 2 2 2 2 2 2 2 2 2
+2 2 2 2 2 1 1 1 1 1 2 1
+1 24
+2 2 2 2 1 2 2 2 2 2 2 2
+1 1 2 2 2 1 1 1 1 1 1 2
+1 25
+2 2 2 2 2 2 2 2 2 2 2 2
+1 1 2 2 2 1 1 1 1 1 1 2
+1 26
+2 2 2 2 2 2 2 2 2 2 2 2
+1 1 2 2 2 1 1 1 1 1 1 2
+1 27
+2 2 2 2 2 2 2 2 2 2 2 2
+1 1 2 2 2 1 1 1 2 1 1 2
+1 28
+2 2 2 2 2 2 2 2 2 2 2 2
+2 2 2 2 2 2 2 2 2 2 2 2
+1 29
+2 2 2 2 2 2 2 2 2 2 2 2
+1 1 2 2 2 1 1 1 1 1 2 2
+1 30
+2 2 2 2 2 2 2 2 2 2 2 2
+1 1 2 2 2 1 1 1 2 2 2 2
+1 31
+2 2 2 2 2 2 2 2 2 2 2 2
+2 2 2 2 2 1 1 1 1 1 2 2
+1 32
+2 2 1 1 2 2 2 2 2 2 2 2
+1 1 2 2 2 2 2 2 2 2 2 2
+1 33
+2 2 2 2 2 2 2 2 2 2 2 2
+1 1 2 2 2 1 1 1 1 1 1 2
+1 34
+2 2 2 2 2 2 2 2 2 2 2 2
+1 1 2 2 2 1 1 1 1 1 1 2
+1 35
+1 1 2 2 2 1 1 1 2 1 1 2
+1 1 2 2 2 1 1 1 1 1 2 2
+1 36
+2 2 2 2 2 2 2 2 2 2 2 2
+2 2 2 2 2 2 2 2 2 2 2 2
+1 37
+(2) (2) 2 2 2 2 2 2 2 2 2 2
+(1) (1) 2 2 2 1 1 1 1 1 2 1
+1 38
+2 2 2 2 2 2 2 2 2 2 2 2
+1 1 2 2 2 1 1 1 1 1 2 2
+1 39
+2 2 2 2 2 2 2 2 2 2 2 2
+2 2 2 2 2 1 1 1 1 1 2 2
+1 40
+2 2 1 2 2 2 2 2 2 2 2 1
+1 1 2 2 2 1 1 1 1 1 1 2
+1 41
+2 2 2 2 2 2 2 2 2 2 2 2
+2 2 2 2 2 2 2 2 2 2 2 2
+1 42
+2 2 2 2 2 2 2 2 2 2 2 2
+2 2 1 2 2 2 2 2 2 2 2 1
+1 43
+2 2 2 2 2 1 1 1 1 1 2 1
+1 1 2 2 2 1 1 1 2 1 1 2
+1 44
+2 2 2 2 2 2 2 2 2 2 2 2
+2 2 2 2 2 2 2 2 2 2 2 2
+1 45
+2 2 2 2 2 2 2 2 2 2 2 2
+1 1 2 2 2 1 1 1 2 1 1 2
+1 46
+2 2 2 2 2 2 2 2 2 2 2 2
+1 1 2 2 2 2 2 2 2 2 2 2
+1 47
+1 1 2 2 2 1 1 1 1 1 2 1
+1 1 2 2 2 1 1 1 1 1 2 1
+1 48
+2 2 2 2 2 2 2 2 2 2 2 2
+2 2 2 2 2 2 2 2 2 2 2 2
+1 49
+2 2 2 2 2 2 2 2 2 2 2 2
+1 1 2 2 2 1 1 1 1 1 1 2
+1 50
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+END BESTPAIRS1
+
+
+Haplotype estimates for each individual, with uncertain phases enclosed in ()
+and uncertain genotypes enclosed in []
+with phase known positions indicated by =
+
+BEGIN BESTPAIRS2
+1 1
+= = = = = = = = = = = =
+= = = = = = = = = = = =
+1 2
+= = = = = = = = = = = =
+= = = = = = = = = = = =
+1 3
+(2) (2) = = = 2 2 2 2 2 = 2
+(1) (1) = = = 1 1 1 1 1 = 1
+1 4
+= = = = 2 = = = = = = =
+= = = = 1 = = = = = = =
+1 5
+2 2 = = = = = = = = (2) =
+1 1 = = = = = = = = (1) =
+1 6
+= = = = = = = = = = = =
+= = = = = = = = = = = =
+1 7
+2 2 = = = 2 2 2 = 2 2 =
+1 1 = = = 1 1 1 = 1 1 =
+1 8
+= = = = = = = = = = = =
+= = = = = = = = = = = =
+1 9
+2 2 = = = 2 2 2 2 2 2 =
+1 1 = = = 1 1 1 1 1 1 =
+1 10
+2 2 = = = 2 2 2 2 2 2 =
+1 1 = = = 1 1 1 1 1 1 =
+1 11
+= = = = = = = = 2 = = =
+= = = = = = = = 1 = = =
+1 12
+2 2 = = = 2 2 2 2 2 2 =
+1 1 = = = 1 1 1 1 1 1 =
+1 13
+2 2 = = = = = = = = = =
+1 1 = = = = = = = = = =
+1 14
+2 2 = = = 2 2 2 2 2 2 =
+1 1 = = = 1 1 1 1 1 1 =
+1 15
+= = = = = 2 2 = = = = =
+= = = = = 1 1 = = = = =
+1 16
+= = = = = 2 2 2 2 2 2 =
+= = = = = 1 1 1 1 1 1 =
+1 17
+2 2 = = = = = = = = = =
+1 1 = = = = = = = = = =
+1 18
+= = = = = = = = = = = =
+= = = = = = = = = = = =
+1 19
+2 2 = = = = = = = = = =
+1 1 = = = = = = = = = =
+1 20
+= = = = 2 = = = = = = =
+= = = = 1 = = = = = = =
+1 21
+= = = = = 2 2 2 = = = =
+= = = = = 1 1 1 = = = =
+1 22
+2 2 = = = = = = = = 2 1
+1 1 = = = = = = = = 1 2
+1 23
+= = = = = 2 2 2 2 2 = 2
+= = = = = 1 1 1 1 1 = 1
+1 24
+2 2 = = 1 2 2 2 2 2 2 =
+1 1 = = 2 1 1 1 1 1 1 =
+1 25
+2 2 = = = 2 2 2 2 2 2 =
+1 1 = = = 1 1 1 1 1 1 =
+1 26
+2 2 = = = 2 2 2 2 2 2 =
+1 1 = = = 1 1 1 1 1 1 =
+1 27
+2 2 = = = 2 2 2 = 2 2 =
+1 1 = = = 1 1 1 = 1 1 =
+1 28
+= = = = = = = = = = = =
+= = = = = = = = = = = =
+1 29
+2 2 = = = 2 2 2 2 2 = =
+1 1 = = = 1 1 1 1 1 = =
+1 30
+2 2 = = = 2 2 2 = = = =
+1 1 = = = 1 1 1 = = = =
+1 31
+= = = = = 2 2 2 2 2 = =
+= = = = = 1 1 1 1 1 = =
+1 32
+2 2 1 1 = = = = = = = =
+1 1 2 2 = = = = = = = =
+1 33
+2 2 = = = 2 2 2 2 2 2 =
+1 1 = = = 1 1 1 1 1 1 =
+1 34
+2 2 = = = 2 2 2 2 2 2 =
+1 1 = = = 1 1 1 1 1 1 =
+1 35
+= = = = = = = = 2 = 1 =
+= = = = = = = = 1 = 2 =
+1 36
+= = = = = = = = = = = =
+= = = = = = = = = = = =
+1 37
+(2) (2) = = = 2 2 2 2 2 = 2
+(1) (1) = = = 1 1 1 1 1 = 1
+1 38
+2 2 = = = 2 2 2 2 2 = =
+1 1 = = = 1 1 1 1 1 = =
+1 39
+= = = = = 2 2 2 2 2 = =
+= = = = = 1 1 1 1 1 = =
+1 40
+2 2 1 = = 2 2 2 2 2 2 1
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+1 41
+= = = = = = = = = = = =
+= = = = = = = = = = = =
+1 42
+= = 2 = = = = = = = = 2
+= = 1 = = = = = = = = 1
+1 43
+2 2 = = = = = = 1 = 2 1
+1 1 = = = = = = 2 = 1 2
+1 44
+= = = = = = = = = = = =
+= = = = = = = = = = = =
+1 45
+2 2 = = = 2 2 2 = 2 2 =
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+2 2 = = = = = = = = = =
+1 1 = = = = = = = = = =
+1 47
+= = = = = = = = = = = =
+= = = = = = = = = = = =
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+= = = = = = = = = = = =
+= = = = = = = = = = = =
+1 49
+2 2 = = = 2 2 2 2 2 2 =
+1 1 = = = 1 1 1 1 1 1 =
+1 50
+2 2 = = = 2 2 2 2 2 2 =
+1 1 = = = 1 1 1 1 1 1 =
+1 51
+= = 2 2 = = = = = = = =
+= = 1 1 = = = = = = = =
+1 52
+(2) (2) = = = 2 2 2 2 2 = 2
+(1) (1) = = = 1 1 1 1 1 = 1
+1 53
+= = = = = = = = = = = =
+= = = = = = = = = = = =
+1 54
+= = = = = 2 2 2 2 2 = 2
+= = = = = 1 1 1 1 1 = 1
+1 55
+2 2 = = = 2 2 2 2 2 2 =
+1 1 = = = 1 1 1 1 1 1 =
+1 56
+2 2 = = = 2 2 2 = = = =
+1 1 = = = 1 1 1 = = = =
+1 57
+2 2 1 = = 2 2 2 2 2 2 1
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+1 58
+2 2 = = = = = = = = = =
+1 1 = = = = = = = = = =
+1 59
+2 2 = = = = = 2 = = = =
+1 1 = = = = = 1 = = = =
+1 60
+2 2 = = = 2 2 2 = 2 2 =
+1 1 = = = 1 1 1 = 1 1 =
+1 61
+= = = = = = = = = = = =
+= = = = = = = = = = = =
+1 62
+= = = = 2 = = = = = = =
+= = = = 1 = = = = = = =
+1 63
+= = = = = = = = = = = =
+= = = = = = = = = = = =
+1 64
+2 2 = = = 2 2 2 2 2 2 =
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+= = = = = = = = = = = =
+= = = = = = = = = = = =
+1 66
+= = 2 = = 1 1 1 1 1 = =
+= = 1 = = 2 2 2 2 2 = =
+1 67
+2 2 = = = = = = = = = =
+1 1 = = = = = = = = = =
+1 68
+2 2 = = = 2 2 2 2 2 2 =
+1 1 = = = 1 1 1 1 1 1 =
+1 69
+= = = = = = = = = = = =
+= = = = = = = = = = = =
+1 70
+= = = = = = = = = = 2 1
+= = = = = = = = = = 1 2
+1 71
+= = 2 = = = = = = = = 2
+= = 1 = = = = = = = = 1
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+= = = = 2 = = = = = = =
+= = = = 1 = = = = = = =
+1 73
+= = = = = = = = = = = =
+= = = = = = = = = = = =
+1 74
+= = = = = = = = = = = =
+= = = = = = = = = = = =
+1 75
+= = = = = = = = = = = =
+= = = = = = = = = = = =
+1 76
+= = = = = = = = = = 2 1
+= = = = = = = = = = 1 2
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+= = = = = = = = = = = =
+= = = = = = = = = = = =
+1 78
+= = = = = = = = = = = =
+= = = = = = = = = = = =
+1 79
+= = = = = = = = 2 = = =
+= = = = = = = = 1 = = =
+1 80
+= = = = = = = = = = 2 =
+= = = = = = = = = = 1 =
+1 81
+= = 2 = = = = = = = = 2
+= = 1 = = = = = = = = 1
+1 82
+= = 2 2 = = = = = = = =
+= = 1 1 = = = = = = = =
+1 83
+2 2 = = = 2 2 2 2 2 2 =
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+= = 2 = = = = = = = = 2
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+= = = = = 2 2 2 2 2 = =
+= = = = = 1 1 1 1 1 = =
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+= = = = = = = = = = = =
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+= = = = = = = = = = = =
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+= = = = = = = = = = = =
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+= = = = = = = = = = = =
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+= = = = = = = = = = = =
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+= = = = = 1 1 1 1 1 1 =
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+= = = = = = = = = = = =
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+= = = = = = = = = = = =
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+= = = = = = = = = = = =
+= = = = = = = = = = = =
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+= = = = = 2 2 2 2 2 = =
+= = = = = 1 1 1 1 1 = =
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+= = = = = 1 1 1 1 1 = =
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+= = = = 1 = = = = = = =
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+= = = = = 2 2 2 2 2 = 2
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+= = = = = = = = = = = =
+= = = = = = = = = = = =
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+= = = = 2 = = = = = = =
+= = = = 1 = = = = = = =
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+= = = = = = = = = = = =
+= = = = = = = = = = = =
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+= = = = = = = = = = = =
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+= = = = = 2 2 2 2 2 2 =
+= = = = = 1 1 1 1 1 1 =
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+= = = = = = = = = = = =
+= = = = = = = = = = = =
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+= = = = = = = = = = = =
+= = = = = = = = = = = =
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+= = 2 = = = = = = = = 2
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+= = 2 = = = = = = = = 2
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+= = = = = = = = = = = =
+= = = = = = = = = = = =
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+= = 2 2 = = = = = = = =
+= = 1 1 = = = = = = = =
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+= = = = = 2 2 2 2 2 = 2
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+= = = = = = = = = = = =
+= = = = = = = = = = = =
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+= = = = = 2 2 2 2 2 = =
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+= = = = = 1 1 = = = = =
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+= = = = = = = = = = = =
+= = = = = = = = = = = =
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+= = 2 = = = = = = = = 2
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+= = = = = = = = = = = =
+= = = = = = = = = = = =
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+= = = = = = = = = = = =
+= = = = = = = = = = = =
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+= = = = = = = = = = = =
+= = = = = = = = = = = =
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+= = = = = = = = = = = =
+= = = = = = = = = = = =
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+= = = = 2 = = = = = = =
+= = = = 1 = = = = = = =
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+= = = = = = = = = = = =
+= = = = = = = = = = = =
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+= = = = = 2 2 2 2 2 = 2
+= = = = = 1 1 1 1 1 = 1
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+= = = = = = = = = = = =
+= = = = = = = = = = = =
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+= = 2 = = = = = = = = 2
+= = 1 = = = = = = = = 1
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+= = = = = = = = = = = =
+= = = = = = = = = = = =
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+2 2 1 1 = 2 2 2 2 2 2 =
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+= = = = = = = = = = = =
+= = = = = = = = = = = =
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+= = = = = = = = = = = =
+= = = = = = = = = = = =
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+1 1 = = = 1 1 1 1 1 1 =
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+= = = = = = = = = = 2 1
+= = = = = = = = = = 1 2
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+= = = = = = = = = = = =
+= = = = = = = = = = = =
+0 200
+= = = = = = = = = = = =
+= = = = = = = = = = = =
+END BESTPAIRS2
+
+
+Phase probabilities at each site
+with phase known positions indicated by =
+and missing data positions indicated by ?
+
+BEGIN PHASEPROBS
+= = = = = = = = = = = =
+= = = = = = = = = = = =
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+= = = = = = = = = = = =
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+= = = = = = = = 1.00 = = =
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+= = = = = 1.00 1.00 = = = = =
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+= = = = = 1.00 1.00 1.00 1.00 1.00 = 1.00
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+= = = = = = = = = = = =
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+= = = = = = = = 1.00 = 1.00 =
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+= = 1.00 1.00 = = = = = = = =
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+= = = = = = = = = = = =
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+= = = = = = = = = = = =
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+= = 1.00 = = = = = = = = 1.00
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+= = = = = = = = = = = =
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+0.79 0.79 = = = 1.00 1.00 1.00 1.00 1.00 = 1.00
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+= = = = = = = = = = = =
+0.95 0.95 = = = 1.00 1.00 1.00 1.00 1.00 = =
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+= = = = = = = = = = = =
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+= = 1.00 1.00 = = = = = = = =
+= = = = = = = = = = = =
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+= = = = = = = = = = = =
+= = = = = 1.00 1.00 1.00 1.00 1.00 = 1.00
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+= = = = = 1.00 1.00 1.00 1.00 1.00 = 1.00
+= = = = = = = = = = = =
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+= = = = = 1.00 1.00 1.00 1.00 1.00 1.00 =
+= = 1.00 1.00 = = = = = = = =
+= = = = = = = = = = = =
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+= = = = = = = = = = = =
+= = = = = = = = = = = =
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+= = = = = = = = = = = =
+= = = = = = = = = = = =
+= = = = = 1.00 1.00 1.00 1.00 1.00 1.00 =
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+= = = = = = = = = = = =
+= = = = = 1.00 1.00 1.00 1.00 1.00 = =
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+= = = = = 1.00 1.00 = = = = =
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+= = 1.00 1.00 = = = = = = = =
+= = = = = 1.00 1.00 1.00 1.00 1.00 = 1.00
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+= = = = = 1.00 1.00 1.00 1.00 1.00 = =
+= = = = = = = = = = = =
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+= = = = = = = = = = = =
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+= = = = = = = = = = = =
+= = = = 1.00 = = = = = = =
+= = = = = 1.00 1.00 1.00 1.00 1.00 = 1.00
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+= = = = = = = = = = = =
+= = = = 1.00 = = = = = = =
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+= = 1.00 = = 1.00 1.00 1.00 1.00 1.00 1.00 1.00
+= = = = = = = = = = = =
+= = = = = = = = = = = =
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+= = = = = = = = = = = =
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+= = = = = 1.00 1.00 1.00 1.00 1.00 1.00 =
+= = = = = = = = = = = =
+0.98 0.98 = = = 1.00 1.00 1.00 1.00 1.00 1.00 =
+= = = = = = = = = = = =
+= = 1.00 = = = = = = = = 1.00
+= = 1.00 = = = = = = = = 1.00
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+= = = = = = = = = = = =
+= = 1.00 1.00 = = = = = = = =
+0.98 0.98 = = = 1.00 1.00 1.00 1.00 1.00 1.00 =
+= = = = = 1.00 1.00 1.00 1.00 1.00 = 1.00
+= = = = = = = = = = = =
+= = = = = 1.00 1.00 1.00 1.00 1.00 = =
+= = = = = 1.00 1.00 = = = = =
+= = = = = = = = = = = =
+= = 1.00 = = = = = = = = 1.00
+= = = = = = = = = = = =
+0.98 0.98 = = = 1.00 1.00 1.00 1.00 1.00 1.00 =
+= = = = = = = = = = = =
+= = = = = = = = = = = =
+= = = = = = = = = = = =
+0.95 0.95 = = = 1.00 1.00 1.00 1.00 1.00 = =
+= = = = 1.00 = = = = = = =
+= = = = = = = = = = = =
+= = = = = 1.00 1.00 1.00 1.00 1.00 = 1.00
+= = = = = = = = = = = =
+= = 1.00 = = = = = = = = 1.00
+1.00 1.00 = = 0.96 = = = = = = =
+= = = = = = = = = = = =
+1.00 1.00 = = = 1.00 1.00 1.00 = 1.00 1.00 =
+0.93 0.93 = = = = = = = = 1.00 1.00
+1.00 1.00 1.00 1.00 = 1.00 1.00 1.00 1.00 1.00 1.00 =
+0.98 0.98 = = = 1.00 1.00 1.00 1.00 1.00 1.00 =
+= = = = = = = = = = = =
+= = = = = = = = = = = =
+0.98 0.98 = = = 1.00 1.00 1.00 1.00 1.00 1.00 =
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+1.00 1.00 = = = = = = = = = =
+1.00 1.00 = = = = = = = = = =
+= = = = = = = = = = 1.00 1.00
+= = = = = = = = = = = =
+= = = = = = = = = = = =
+END PHASEPROBS
diff --git a/trunk/test/create_file/paup_file/caco.phase.out_freqs b/trunk/test/create_file/paup_file/caco.phase.out_freqs
new file mode 100644
index 0000000000000000000000000000000000000000..961932bcc9871980ce4ac1b7c792977112124540
--- /dev/null
+++ b/trunk/test/create_file/paup_file/caco.phase.out_freqs
@@ -0,0 +1,20 @@
+ index haplotype E(freq) S.E E[Freq(0)] S.E.(0) E[Freq(1)] S.E.(1)
+ 1 222222222222 0.555115 0.004229 0.627410 0.004332 0.482823 0.006273
+ 2 222222222212 0.000025 0.000249 0.000050 0.000499 0.000000 0.000035
+ 3 222221122222 0.015025 0.000248 0.020050 0.000495 0.010000 0.000016
+ 4 222221112112 0.000048 0.000342 0.000044 0.000468 0.000050 0.000500
+ 5 222221111122 0.015246 0.002172 0.006150 0.002782 0.024345 0.003072
+ 6 222221111121 0.052410 0.002982 0.065479 0.002162 0.039336 0.005284
+ 7 222221111112 0.014906 0.002744 0.021017 0.002393 0.008794 0.004801
+ 8 222212222222 0.029875 0.000545 0.024750 0.001089 0.035000 0.000022
+ 9 221222222221 0.035000 0.000009 0.035000 0.000021 0.035000 0.000017
+ 10 221122222222 0.027300 0.000712 0.030000 0.000043 0.024601 0.001445
+ 11 112222222222 0.054835 0.004194 0.047490 0.004155 0.062177 0.006272
+ 12 112221112222 0.015000 0.000014 0.010000 0.000027 0.020000 0.000029
+ 13 112221112112 0.027452 0.000342 0.009956 0.000468 0.044950 0.000500
+ 14 112221111122 0.034853 0.002226 0.028950 0.002820 0.040755 0.003133
+ 15 112221111121 0.022491 0.003126 0.009421 0.002138 0.035564 0.005464
+ 16 112221111112 0.100019 0.002729 0.063883 0.002348 0.136156 0.004803
+ 17 112221111111 0.000050 0.000477 0.000050 0.000496 0.000050 0.000496
+ 18 112212222222 0.000125 0.000545 0.000250 0.001089 0.000000 0.000020
+ 19 111122222222 0.000175 0.000673 0.000000 0.000021 0.000349 0.001370
diff --git a/trunk/test/create_file/paup_file/caco.phase.out_monitor b/trunk/test/create_file/paup_file/caco.phase.out_monitor
new file mode 100644
index 0000000000000000000000000000000000000000..0b9370b8bf559521e291d4043dcc880c145b7f00
--- /dev/null
+++ b/trunk/test/create_file/paup_file/caco.phase.out_monitor
@@ -0,0 +1,100 @@
+-613.766
+-613.357
+-613.393
+-613.016
+-613.967
+-613.729
+-613.375
+-614.267
+-613.225
+-614.541
+-613.865
+-615.541
+-613.931
+-612.346
+-614.596
+-614.393
+-614.534
+-613.869
+-613.663
+-613.636
+-613.661
+-614.697
+-614.782
+-613.689
+-613.687
+-613.223
+-614.346
+-613.48
+-613.441
+-613.017
+-613.231
+-613.324
+-614.747
+-614.169
+-614.61
+-613.456
+-613.649
+-613.52
+-614.671
+-615.592
+-615.045
+-614.39
+-614.256
+-613.451
+-614.576
+-613.898
+-613.09
+-613.859
+-613.1
+-612.794
+-614.097
+-614.181
+-615.393
+-613.269
+-613.612
+-613.473
+-613.996
+-613.887
+-614.126
+-615.226
+-616.669
+-613.957
+-613.176
+-613.049
+-613.82
+-613.907
+-613.262
+-613.53
+-613.178
+-614.283
+-616.27
+-614.025
+-613.885
+-613.431
+-614.968
+-614.325
+-613.745
+-614.61
+-613.915
+-613.513
+-613.473
+-614.055
+-613.018
+-613.077
+-613.283
+-613.654
+-613.29
+-613.179
+-613.47
+-612.917
+-615.48
+-612.41
+-614.563
+-613.713
+-613.457
+-614.041
+-616.037
+-613.439
+-614.21
+-614.558
diff --git a/trunk/test/create_file/paup_file/caco.phase.out_pairs b/trunk/test/create_file/paup_file/caco.phase.out_pairs
new file mode 100644
index 0000000000000000000000000000000000000000..3ed712c201f18b5370d61af905c11c558cded1c3
--- /dev/null
+++ b/trunk/test/create_file/paup_file/caco.phase.out_pairs
@@ -0,0 +1,443 @@
+IND: 1
+222222222222 , 222222222222 , 1.000
+IND: 2
+222222222222 , 222222222222 , 1.000
+IND: 3
+222222222222 , 112221111121 , 0.792
+222221111121 , 112222222222 , 0.206
+IND: 4
+222222222222 , 222212222222 , 1.000
+IND: 5
+222221111122 , 112221111112 , 0.725
+222221111112 , 112221111122 , 0.275
+IND: 6
+222222222222 , 222222222222 , 1.000
+IND: 7
+222222222222 , 112221112112 , 0.999
+IND: 8
+222222222222 , 222222222222 , 1.000
+IND: 9
+222222222222 , 112221111112 , 0.983
+222221111112 , 112222222222 , 0.017
+IND: 10
+222222222222 , 112221111112 , 0.983
+222221111112 , 112222222222 , 0.017
+IND: 11
+112221112112 , 112221111112 , 1.000
+IND: 12
+222222222222 , 112221111112 , 0.983
+222221111112 , 112222222222 , 0.017
+IND: 13
+222222222222 , 112222222222 , 1.000
+IND: 14
+222222222222 , 112221111112 , 0.983
+222221111112 , 112222222222 , 0.017
+IND: 15
+222222222222 , 222221122222 , 1.000
+IND: 16
+112222222222 , 112221111112 , 1.000
+IND: 17
+222222222222 , 112222222222 , 1.000
+IND: 18
+222222222222 , 222222222222 , 1.000
+IND: 19
+222222222222 , 112222222222 , 1.000
+IND: 20
+222222222222 , 222212222222 , 1.000
+IND: 21
+112222222222 , 112221112222 , 1.000
+IND: 22
+222221111121 , 112221111112 , 0.931
+222221111112 , 112221111121 , 0.068
+IND: 23
+222222222222 , 222221111121 , 1.000
+IND: 24
+222212222222 , 112221111112 , 0.998
+IND: 25
+222222222222 , 112221111112 , 0.983
+222221111112 , 112222222222 , 0.017
+IND: 26
+222222222222 , 112221111112 , 0.983
+222221111112 , 112222222222 , 0.017
+IND: 27
+222222222222 , 112221112112 , 0.999
+IND: 28
+222222222222 , 222222222222 , 1.000
+IND: 29
+222222222222 , 112221111122 , 0.952
+222221111122 , 112222222222 , 0.048
+IND: 30
+222222222222 , 112221112222 , 0.999
+IND: 31
+222222222222 , 222221111122 , 1.000
+IND: 32
+222222222222 , 111122222222 , 0.040
+221122222222 , 112222222222 , 0.960
+IND: 33
+222222222222 , 112221111112 , 0.983
+222221111112 , 112222222222 , 0.017
+IND: 34
+222222222222 , 112221111112 , 0.983
+222221111112 , 112222222222 , 0.017
+IND: 35
+112221112112 , 112221111122 , 1.000
+IND: 36
+222222222222 , 222222222222 , 1.000
+IND: 37
+222222222222 , 112221111121 , 0.791
+222221111121 , 112222222222 , 0.207
+IND: 38
+222222222222 , 112221111122 , 0.952
+222221111122 , 112222222222 , 0.048
+IND: 39
+222222222222 , 222221111122 , 1.000
+IND: 40
+221222222221 , 112221111112 , 0.999
+IND: 41
+222222222222 , 222222222222 , 1.000
+IND: 42
+222222222222 , 221222222221 , 1.000
+IND: 43
+222221111121 , 112221112112 , 0.995
+IND: 44
+222222222222 , 222222222222 , 1.000
+IND: 45
+222222222222 , 112221112112 , 0.999
+IND: 46
+222222222222 , 112222222222 , 1.000
+IND: 47
+112221111121 , 112221111121 , 1.000
+IND: 48
+222222222222 , 222222222222 , 1.000
+IND: 49
+222222222222 , 112221111112 , 0.983
+222221111112 , 112222222222 , 0.017
+IND: 50
+222222222222 , 112221111112 , 0.983
+222221111112 , 112222222222 , 0.017
+IND: 51
+222222222222 , 221122222222 , 1.000
+IND: 52
+222222222222 , 112221111121 , 0.793
+222221111121 , 112222222222 , 0.205
+IND: 53
+222222222222 , 222222222222 , 1.000
+IND: 54
+222222222222 , 222221111121 , 1.000
+IND: 55
+222222222222 , 112221111112 , 0.983
+222221111112 , 112222222222 , 0.017
+IND: 56
+222222222222 , 112221112222 , 0.999
+IND: 57
+221222222221 , 112221111112 , 0.999
+IND: 58
+222221111122 , 112221111122 , 1.000
+IND: 59
+222221122222 , 112221112222 , 1.000
+IND: 60
+222222222222 , 112221112112 , 0.999
+IND: 61
+222222222222 , 222222222222 , 1.000
+IND: 62
+222222222222 , 222212222222 , 1.000
+IND: 63
+222222222222 , 222222222222 , 1.000
+IND: 64
+222222222222 , 112221111112 , 0.983
+222221111112 , 112222222222 , 0.017
+IND: 65
+222222222222 , 222222222222 , 1.000
+IND: 66
+222221111121 , 221222222221 , 1.000
+IND: 67
+222222222222 , 112222222222 , 1.000
+IND: 68
+222222222222 , 112221111112 , 0.983
+222221111112 , 112222222222 , 0.017
+IND: 69
+222222222222 , 222222222222 , 1.000
+IND: 70
+112221111121 , 112221111112 , 0.998
+IND: 71
+222222222222 , 221222222221 , 1.000
+IND: 72
+222222222222 , 222212222222 , 1.000
+IND: 73
+222222222222 , 222222222222 , 1.000
+IND: 74
+222222222222 , 222222222222 , 1.000
+IND: 75
+222212222222 , 222212222222 , 1.000
+IND: 76
+222221111121 , 222221111112 , 0.999
+IND: 77
+222222222222 , 222222222222 , 1.000
+IND: 78
+222222222222 , 222222222222 , 1.000
+IND: 79
+112221112112 , 112221111112 , 1.000
+IND: 80
+112221111122 , 112221111112 , 1.000
+IND: 81
+222222222222 , 221222222221 , 1.000
+IND: 82
+222222222222 , 221122222222 , 1.000
+IND: 83
+222222222222 , 112221111112 , 0.983
+222221111112 , 112222222222 , 0.017
+IND: 84
+222221111121 , 112221112112 , 0.994
+IND: 85
+222222222222 , 112222222222 , 1.000
+IND: 86
+222222222222 , 112221111112 , 0.983
+222221111112 , 112222222222 , 0.017
+IND: 87
+222222222222 , 221222222221 , 1.000
+IND: 88
+222222222222 , 222221111122 , 1.000
+IND: 89
+222222222222 , 221122222222 , 1.000
+IND: 90
+222222222222 , 222222222222 , 1.000
+IND: 91
+112222222222 , 112221111122 , 1.000
+IND: 92
+112221111112 , 112221111112 , 1.000
+IND: 93
+222221111121 , 111122222222 , 0.016
+221122222222 , 112221111121 , 0.980
+IND: 94
+222222222222 , 112222222222 , 1.000
+IND: 95
+222222222222 , 112221111121 , 0.792
+222221111121 , 112222222222 , 0.206
+IND: 96
+222222222222 , 112221111112 , 0.983
+222221111112 , 112222222222 , 0.017
+IND: 97
+222222222222 , 222222222222 , 1.000
+IND: 98
+222222222222 , 112221111122 , 0.952
+222221111122 , 112222222222 , 0.048
+IND: 99
+222222222222 , 112221111122 , 0.953
+222221111122 , 112222222222 , 0.047
+IND: 100
+222222222222 , 222222222222 , 1.000
+IND: 101
+222222222222 , 222222222222 , 1.000
+IND: 102
+222222222222 , 221122222222 , 1.000
+IND: 103
+222222222222 , 222222222222 , 1.000
+IND: 104
+222222222222 , 112221111112 , 0.983
+222221111112 , 112222222222 , 0.017
+IND: 105
+222222222222 , 222222222222 , 1.000
+IND: 106
+222222222222 , 222221111121 , 1.000
+IND: 107
+222222222222 , 112221111122 , 0.953
+222221111122 , 112222222222 , 0.047
+IND: 108
+222222222222 , 222221111121 , 1.000
+IND: 109
+222222222222 , 222222222222 , 1.000
+IND: 110
+222222222222 , 112221111122 , 0.952
+222221111122 , 112222222222 , 0.048
+IND: 111
+222222222222 , 222221111121 , 1.000
+IND: 112
+222222222222 , 222221111112 , 0.999
+IND: 113
+222222222222 , 221122222222 , 1.000
+IND: 114
+222222222222 , 222222222222 , 1.000
+IND: 115
+222222222222 , 112222222222 , 1.000
+IND: 116
+222221111121 , 221122222222 , 0.995
+IND: 117
+222222222222 , 222222222222 , 1.000
+IND: 118
+222222222222 , 222222222222 , 1.000
+IND: 119
+222222222222 , 112221112222 , 0.999
+IND: 120
+222222222222 , 222221122222 , 1.000
+IND: 121
+222222222222 , 222222222222 , 1.000
+IND: 122
+222222222222 , 222222222222 , 1.000
+IND: 123
+222221111121 , 222221111121 , 1.000
+IND: 124
+222222222222 , 222221111112 , 0.999
+IND: 125
+222222222222 , 112222222222 , 1.000
+IND: 126
+222222222222 , 222222222222 , 1.000
+IND: 127
+112222222222 , 112221111122 , 1.000
+IND: 128
+222222222222 , 112221111112 , 0.983
+222221111112 , 112222222222 , 0.017
+IND: 129
+222222222222 , 222221122222 , 1.000
+IND: 130
+222222222222 , 222222222222 , 1.000
+IND: 131
+222222222222 , 222212222222 , 1.000
+IND: 132
+222222222222 , 222222222222 , 1.000
+IND: 133
+222222222222 , 222222222222 , 1.000
+IND: 134
+222222222222 , 222222222222 , 1.000
+IND: 135
+222221111121 , 222221111121 , 1.000
+IND: 136
+222222222222 , 222222222222 , 1.000
+IND: 137
+222222222222 , 221122222222 , 1.000
+IND: 138
+222222222222 , 222221111121 , 1.000
+IND: 139
+222222222222 , 112221111121 , 0.790
+222221111121 , 112222222222 , 0.209
+IND: 140
+222222222222 , 222221111122 , 1.000
+IND: 141
+222222222222 , 222222222222 , 1.000
+IND: 142
+222222222222 , 222221122222 , 1.000
+IND: 143
+222222222222 , 222222222222 , 1.000
+IND: 144
+222222222222 , 221222222221 , 1.000
+IND: 145
+222222222222 , 221222222221 , 1.000
+IND: 146
+222222222222 , 222222222222 , 1.000
+IND: 147
+222222222222 , 222212222222 , 1.000
+IND: 148
+222222222222 , 222221111121 , 1.000
+IND: 149
+222222222222 , 112221112222 , 0.999
+IND: 150
+222222222222 , 222222222222 , 1.000
+IND: 151
+222222222222 , 222212222222 , 1.000
+IND: 152
+222222222222 , 112221111122 , 0.953
+222221111122 , 112222222222 , 0.047
+IND: 153
+222221111112 , 221222222221 , 0.998
+IND: 154
+222222222222 , 222222222222 , 1.000
+IND: 155
+222222222222 , 222222222222 , 1.000
+IND: 156
+222222222222 , 112222222222 , 1.000
+IND: 157
+222222222222 , 222222222222 , 1.000
+IND: 158
+222222222222 , 112221112112 , 0.999
+IND: 159
+222222222222 , 222221111112 , 0.999
+IND: 160
+222222222222 , 222222222222 , 1.000
+IND: 161
+222222222222 , 112221111112 , 0.983
+222221111112 , 112222222222 , 0.017
+IND: 162
+222222222222 , 222222222222 , 1.000
+IND: 163
+222222222222 , 221222222221 , 1.000
+IND: 164
+222222222222 , 221222222221 , 1.000
+IND: 165
+222222222222 , 112222222222 , 1.000
+IND: 166
+222222222222 , 222222222222 , 1.000
+IND: 167
+222222222222 , 221122222222 , 1.000
+IND: 168
+222222222222 , 112221111112 , 0.983
+222221111112 , 112222222222 , 0.017
+IND: 169
+222222222222 , 222221111121 , 1.000
+IND: 170
+222222222222 , 222222222222 , 1.000
+IND: 171
+112222222222 , 112221111122 , 1.000
+IND: 172
+222222222222 , 222221122222 , 1.000
+IND: 173
+222222222222 , 222222222222 , 1.000
+IND: 174
+222222222222 , 221222222221 , 1.000
+IND: 175
+222222222222 , 222222222222 , 1.000
+IND: 176
+222222222222 , 112221111112 , 0.983
+222221111112 , 112222222222 , 0.017
+IND: 177
+222222222222 , 222222222222 , 1.000
+IND: 178
+222222222222 , 222222222222 , 1.000
+IND: 179
+222222222222 , 222222222222 , 1.000
+IND: 180
+222222222222 , 112221111122 , 0.952
+222221111122 , 112222222222 , 0.048
+IND: 181
+222222222222 , 222212222222 , 1.000
+IND: 182
+222222222222 , 222222222222 , 1.000
+IND: 183
+222222222222 , 222221111121 , 1.000
+IND: 184
+112221111112 , 112221111112 , 1.000
+IND: 185
+222222222222 , 221222222221 , 1.000
+IND: 186
+222222222222 , 112212222222 , 0.044
+222212222222 , 112222222222 , 0.956
+IND: 187
+222222222222 , 222222222222 , 1.000
+IND: 188
+222222222222 , 112221112112 , 0.999
+IND: 189
+222221111121 , 112221111112 , 0.930
+222221111112 , 112221111121 , 0.069
+IND: 190
+221122222222 , 112221111112 , 0.998
+IND: 191
+222222222222 , 112221111112 , 0.983
+222221111112 , 112222222222 , 0.017
+IND: 192
+222222222222 , 222222222222 , 1.000
+IND: 193
+222222222222 , 222222222222 , 1.000
+IND: 194
+222222222222 , 112221111112 , 0.983
+222221111112 , 112222222222 , 0.017
+IND: 195
+222222222222 , 112221111112 , 0.983
+222221111112 , 112222222222 , 0.017
+IND: 196
+222222222222 , 112222222222 , 1.000
+IND: 197
+222222222222 , 112222222222 , 1.000
+IND: 198
+112221111121 , 112221111112 , 0.998
+IND: 199
+222222222222 , 222222222222 , 1.000
+IND: 200
+222222222222 , 222222222222 , 1.000
diff --git a/trunk/test/create_file/paup_file/caco.phase.out_recom b/trunk/test/create_file/paup_file/caco.phase.out_recom
new file mode 100644
index 0000000000000000000000000000000000000000..e777fc2c7197ec4284f28150f66df378141b05cd
--- /dev/null
+++ b/trunk/test/create_file/paup_file/caco.phase.out_recom
@@ -0,0 +1,101 @@
+293 693 2319 2346 3697 3727 3848 4329 4384 4553 6297 6760
+0.000393544 5.9584 2.78669 0.478486 0.907596 0.158427 0.431209 0.788454 13.8816 2.06328 0.680348 0.251305
+0.000842323 1.08612 7.74698 0.474669 0.727604 0.239732 0.373648 1.38996 8.19752 1.53227 0.437247 0.481374
+0.000501811 0.63859 6.14959 0.776848 0.914494 0.212711 0.680679 1.28448 2.76135 2.25261 0.782005 0.762761
+0.000501811 0.35663 8.50227 0.647782 0.964044 1.12601 1.25164 1.10936 1.90244 3.6517 0.504571 0.774254
+0.000501811 0.686356 2.59719 0.821315 4.54061 0.927993 1.3787 1.88739 2.37621 6.69966 3.14301 0.712516
+0.000396019 0.609389 1.12981 0.793391 3.92241 0.667248 0.404491 5.32804 4.75679 5.29492 3.00877 0.714
+0.000396019 1.01892 0.354522 1.20873 3.53214 0.741759 1.35392 1.87064 2.36135 2.87143 1.26124 1.71964
+0.000913344 1.01892 0.354522 1.20873 3.53214 0.741759 1.35392 1.87064 2.36135 2.87143 1.26124 1.71964
+0.000913344 0.55879 0.285401 1.87581 2.01506 0.50696 2.63465 0.548832 1.36601 1.09042 0.443662 1.04189
+0.0015277 0.212784 0.383514 2.17963 2.02966 0.602139 1.74228 1.00479 0.793666 0.670155 0.674405 1.10535
+0.00172172 0.159812 0.776429 0.724332 2.37289 1.69288 2.05219 0.620925 1.12593 0.89822 0.126828 0.93602
+0.00172172 0.255633 2.52472 0.323786 0.670771 1.01491 0.93974 0.785882 1.29485 0.444514 0.294244 0.796798
+0.000827408 0.255633 2.52472 0.323786 0.670771 1.01491 0.93974 0.785882 1.29485 0.444514 0.294244 0.796798
+0.000893151 0.255633 2.52472 0.323786 0.670771 1.01491 0.93974 0.785882 1.29485 0.444514 0.294244 0.796798
+0.000893151 0.263042 3.60246 0.707909 1.6794 0.399298 0.487905 2.46552 1.63285 0.481498 0.573436 0.894465
+0.000893151 0.628483 2.22971 0.419829 4.70987 0.339169 0.164367 2.11849 2.84196 0.337126 1.20103 1.52597
+0.000619779 1.96986 3.78823 0.381201 1.3402 0.901981 0.110315 10.7129 0.970935 0.167448 1.17331 2.17489
+0.000619779 1.02913 2.60199 0.470211 2.17014 0.757432 0.0819351 3.31205 1.57794 0.653834 1.95803 3.05827
+0.000579136 0.437032 4.74419 0.318081 2.40608 1.79029 0.125117 2.40972 1.40938 1.53931 1.70629 8.114
+0.000493112 0.437032 4.74419 0.318081 2.40608 1.79029 0.125117 2.40972 1.40938 1.53931 1.70629 8.114
+0.000493112 0.437032 4.74419 0.318081 2.40608 1.79029 0.125117 2.40972 1.40938 1.53931 1.70629 8.114
+0.000556703 0.205758 3.26153 0.166431 2.7438 1.83267 0.0717762 4.11834 2.23163 1.59649 1.55087 23.4534
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+0.0011018 0.843377 1.06037 1.33429 0.328627 0.172458 0.298123 1.97036 6.32333 0.0840604 0.867668 1.71433
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+0.000859738 0.577999 7.16535 0.385263 1.60087 0.482222 0.171995 2.59068 12.0276 0.377708 0.100748 0.244712
+0.000267063 0.697694 8.0023 0.902351 1.74028 0.475204 0.209502 7.75016 9.11962 1.88054 0.294206 0.522119
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+0.000103749 1.35947 12.3759 1.36378 1.00808 1.14485 0.538304 2.19587 36.5218 3.07189 1.174 4.49054
+0.000628479 0.688601 3.54671 2.85515 1.04413 0.689995 0.520923 2.09665 15.7393 1.97669 0.465015 2.77933
+0.000409634 0.384245 2.15014 1.4627 0.894328 0.385081 0.6711 1.34657 12.7344 1.7203 0.506701 0.444575
+0.000763361 0.616874 3.07039 0.918025 0.361446 0.913791 0.492172 1.59125 7.35629 1.13232 0.125114 1.07445
+0.000644813 1.64041 5.75504 0.992744 0.578422 1.04756 0.508682 2.31144 6.63557 0.723735 0.369314 0.539037
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+0.000408163 1.51914 6.31296 0.311119 0.533448 6.49628 3.79084 3.06401 5.98743 3.71607 1.43767 0.298164
+0.000408163 0.546431 4.15327 0.169109 1.8052 1.61026 1.30777 9.01325 3.01198 0.624283 0.695788 0.343475
+0.000482584 0.546431 4.15327 0.169109 1.8052 1.61026 1.30777 9.01325 3.01198 0.624283 0.695788 0.343475
+0.000492712 0.150016 4.20697 0.154941 2.03509 2.48652 2.9537 4.17654 3.9858 0.313526 0.3567 0.448938
+0.00104376 0.164929 4.44581 0.16806 1.90766 2.80991 2.71451 0.779617 9.90555 0.185808 1.29391 0.774224
+0.000921771 0.173033 1.67379 0.406793 1.12893 2.4188 2.66242 3.21667 5.15603 0.490716 0.502179 8.68997
+0.000744675 0.113874 3.72866 0.965066 2.82437 1.88532 3.47211 6.23989 2.13207 0.667858 0.16731 3.10385
+0.000708798 0.459591 2.41596 1.1741 2.63217 3.77093 14.2416 4.4189 2.41986 0.752112 0.223213 0.710983
+0.000370101 1.14965 8.47595 0.429888 6.59756 1.32764 5.23542 3.51894 2.42752 0.988876 1.38453 1.44539
+0.000202928 0.810258 22.0796 0.222888 10.5268 0.408837 2.69115 1.18015 0.292964 1.13989 0.61598 0.822454
+0.000202928 1.27261 2.3716 1.00372 6.09695 1.19042 2.06562 2.23196 0.774424 1.3878 0.528261 4.49754
+0.000623611 1.20713 3.18335 1.45189 6.42081 0.304712 0.463984 2.14754 1.73793 0.547199 0.779745 2.52063
+0.000623611 1.20713 3.18335 1.45189 6.42081 0.304712 0.463984 2.14754 1.73793 0.547199 0.779745 2.52063
+0.000623611 0.441788 3.69336 2.71974 2.5619 0.338974 0.445481 2.17073 0.447888 0.350851 0.426347 2.40122
+0.000398511 1.2016 2.61458 5.25041 4.52563 2.80915 0.175812 4.28717 0.896315 0.691304 0.965578 2.40004
+0.000398511 0.850091 5.75161 3.07562 1.39333 2.34886 0.283995 7.81433 0.706485 0.521203 0.805188 1.95562
+0.000574314 0.850091 5.75161 3.07562 1.39333 2.34886 0.283995 7.81433 0.706485 0.521203 0.805188 1.95562
+0.000574314 0.949821 12.2918 2.10568 1.2036 1.46687 0.181435 1.93669 0.996414 0.286215 0.373217 1.10946
+0.000574314 0.59557 6.57884 5.46132 1.06696 0.856059 0.13611 1.1837 2.55758 0.238076 1.49261 0.803682
+0.000388315 0.813744 12.2097 3.37485 3.10051 1.63998 0.171107 2.36551 10.409 0.18225 1.42194 0.637549
+0.000388315 0.937362 2.07701 1.94727 5.32289 0.867615 0.302658 4.61473 21.5677 0.132355 1.71254 0.957763
+0.000443264 0.542432 1.52006 1.74095 11.7113 1.31718 0.510762 4.97927 13.5078 0.755393 1.88324 0.999278
+0.000443264 0.374565 1.18049 2.04795 6.1762 0.840161 0.531692 2.20385 37.304 0.774564 6.75428 0.958776
+0.000443264 0.329483 1.58026 2.24534 4.27244 0.410483 0.648674 2.28327 57.8324 0.800175 3.25358 1.10229
+0.000370709 0.704408 1.10358 1.74587 11.0683 0.150022 1.12998 4.41563 28.4381 0.874559 6.17282 1.37797
+0.000492933 0.983631 3.23438 5.13202 8.45855 0.484695 0.620607 3.12965 22.4364 1.03345 1.84397 0.881356
+0.000157606 1.22074 11.7435 2.61503 3.31152 0.225625 0.995412 4.935 6.79874 1.73535 2.10761 0.834729
+0.000406557 0.761067 6.99674 1.16149 4.03154 0.192392 0.539269 2.65324 4.02536 0.954411 0.929972 1.65554
+0.000406557 2.00378 7.24102 0.795962 12.4883 0.314985 0.703411 1.84454 7.84488 1.7019 0.518936 0.460079
+0.000170653 1.69248 4.78386 0.519634 6.24708 0.0812359 0.534058 1.97235 3.35377 0.831196 0.264399 0.228781
+0.000213689 1.69248 4.78386 0.519634 6.24708 0.0812359 0.534058 1.97235 3.35377 0.831196 0.264399 0.228781
+0.000447429 0.971073 1.84156 1.42048 6.82482 0.131073 0.9533 0.642353 2.01859 0.584758 0.379496 0.112628
+0.000720377 2.3193 2.03893 1.08889 9.09212 0.183816 0.666393 0.871415 1.18396 0.956273 0.162195 0.134702
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+0.000192591 2.10795 5.46576 2.78584 16.2581 0.630966 0.618288 1.65547 1.61205 5.85926 0.366595 0.149156
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+0.000354182 1.1666 1.32848 1.32603 2.53522 2.41363 0.261496 3.04003 4.00776 1.20925 0.341897 1.80799
+0.00125954 0.55311 1.27387 0.282124 1.08977 2.34851 0.291991 3.71516 3.41684 0.735741 0.882259 2.87549
+0.000416418 0.55311 1.27387 0.282124 1.08977 2.34851 0.291991 3.71516 3.41684 0.735741 0.882259 2.87549
+0.00079303 0.884978 1.21613 0.197333 0.945915 2.60808 1.07709 1.40486 2.35847 1.07769 0.738796 1.30497
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+0.00177964 0.347945 3.99902 0.0831539 0.198085 0.694899 1.21558 0.958362 1.89391 1.58313 0.567526 1.33721
+0.000614328 0.256175 2.84897 0.706956 0.114828 0.363835 2.90409 0.658347 2.37268 8.70424 2.36469 3.25852
+0.000905162 0.269834 0.897171 0.941207 0.0696426 0.417761 4.21433 0.924518 6.77901 3.48419 3.16389 0.951384
diff --git a/trunk/test/create_file/paup_file/caco.prepaup b/trunk/test/create_file/paup_file/caco.prepaup
new file mode 100644
index 0000000000000000000000000000000000000000..89857b69935019f039df195ea2e1b68a1c87da98
--- /dev/null
+++ b/trunk/test/create_file/paup_file/caco.prepaup
@@ -0,0 +1,38 @@
+#Nexus
+Begin data;
+dimension ntax=15 nchar=12;
+format symbols="0123456789" missing=?;
+matrix
+H002 112221111122
+H010 222212222222
+H007 222221111121
+H008 112221112112
+H014 112221112222
+H013 222221122222
+H001 112222222222
+H003 221122222222
+H004 222222222222
+H005 221222222221
+H012 222221111112
+H009 112221111121
+H006 112221111112
+H011 222221111122
+H000_ancetre [add ancestral haplotype]
+;
+end;
+begin assumptions;
+ancstates *anc vector = [add ancestral haplotype];
+end;
+begin paup;
+set nowarnreset autoclose maxtrees = [2000] increase=[no - Auto AutoInc = 100] monitor = no taxlabels = full
+root=lundberg warnroot=no opt=[deltran - acctran] ancstates=anc;
+hsearch;
+savetrees [from=1 to=1] file=[test.tree] root=yes format=altnexus;
+cleartrees nowarn=yes;
+gettrees rooted=yes file=[test.tree];
+log file = [test.res.log] replace=[yes - no];
+describetrees [all] /plot=[cladogram - phylogram] brlens=yes rootmethod=lundberg apolist=yes;
+log stop;
+end;
+quit;
+[WARNING, this file is designed for bi-allelic data. If it is not the case, you may have to modify this input file, for example by specifying the ordered option in the typeset command in the assumption block]
diff --git a/trunk/test/create_file/paup_file/create_file b/trunk/test/create_file/paup_file/create_file
new file mode 100755
index 0000000000000000000000000000000000000000..79677361f880871e746b95ee7f4a66a99cef0f9d
--- /dev/null
+++ b/trunk/test/create_file/paup_file/create_file
@@ -0,0 +1,12 @@
+#!/bin/sh -x
+
+
+# To run phase
+~/phase/phase.2.0.2.linux/PHASE -c-1 caco.phase caco.phase.out 100 1 100
+
+# To obtain a paup input file
+../../../altree-convert -i caco.phase.out -p paup \
+-t NUM -r phase -c nb_cas_control.txt -o caco.prepaup
+
+# Warning: the file caco.prepaup is not a valid paup input file.
+# You must select options, file names, etc before running paup
diff --git a/trunk/test/create_file/paup_file/nb_cas_control.txt b/trunk/test/create_file/paup_file/nb_cas_control.txt
new file mode 100644
index 0000000000000000000000000000000000000000..f95426676c925522d57c768d3ed26050ac333923
--- /dev/null
+++ b/trunk/test/create_file/paup_file/nb_cas_control.txt
@@ -0,0 +1,14 @@
+H002 m008 c006
+H010 m007 c005
+H007 m007 c013
+H008 m009 c002
+H014 m004 c002
+H013 m002 c004
+H001 m011 c009
+H003 m005 c006
+H004 m098 c126
+H005 m007 c007
+H012 m001 c004
+H009 m008 c002
+H006 m028 c013
+H011 m005 c001
diff --git a/trunk/test/create_file/phy-paml_file/NUM b/trunk/test/create_file/phy-paml_file/NUM
new file mode 100644
index 0000000000000000000000000000000000000000..0fcc5d715cf67c32674f580140c8b7edb315f08b
--- /dev/null
+++ b/trunk/test/create_file/phy-paml_file/NUM
@@ -0,0 +1,35 @@
+H019 m003 c003
+H026 m001 c000
+H004 m011 c002
+H020 m005 c009
+H034 m001 c000
+H027 m001 c002
+H023 m001 c005
+H016 m002 c002
+H002 m009 c003
+H015 m002 c006
+H006 m023 c019
+H001 m024 c039
+H010 m001 c003
+H028 m004 c000
+H024 m001 c000
+H017 m000 c008
+H009 m005 c010
+H007 m025 c036
+H033 m000 c001
+H008 m028 c019
+H029 m001 c003
+H003 m002 c000
+H035 m001 c000
+H013 m015 c005
+H032 m000 c001
+H025 m002 c003
+H021 m011 c002
+H030 m001 c001
+H031 m001 c000
+H012 m001 c002
+H005 m002 c002
+H011 m003 c008
+H022 m009 c001
+H014 m002 c003
+H018 m002 c002
diff --git a/trunk/test/create_file/phy-paml_file/create_file b/trunk/test/create_file/phy-paml_file/create_file
new file mode 100755
index 0000000000000000000000000000000000000000..d5fe92994c159a9c4f57859281873eab7057d1a0
--- /dev/null
+++ b/trunk/test/create_file/phy-paml_file/create_file
@@ -0,0 +1,9 @@
+#!/bin/sh -x
+
+# To run Famhap:
+~/FAMHAP/FAMHAP15/famhap15 fam19_0 trio.fmh dp P
+
+# To obtain phylip/paml input files using altree-convert
+../../../altree-convert -i trio.fmh \
+ -j fam19_0_H1_HAPLOTYPES -p phylip -r famhap -t NUM \
+ -c nb_cas_control.txt -o trio.phy
diff --git a/trunk/test/create_file/phy-paml_file/fam19_0 b/trunk/test/create_file/phy-paml_file/fam19_0
new file mode 100644
index 0000000000000000000000000000000000000000..8fe7d4871ed1aad02e0065b38dbeeb9c85bfc246
--- /dev/null
+++ b/trunk/test/create_file/phy-paml_file/fam19_0
@@ -0,0 +1,300 @@
+0 1 0 0 1 1 2 2 1 1 2 2 2 2 1 1 2 2 1 1 1 1 1 1 2 2
+0 2 0 0 2 1 1 1 1 1 2 2 1 2 2 2 1 1 2 1 2 1 2 1 1 1
+0 3 1 2 1 2 2 1 1 1 2 2 2 1 1 2 2 1 1 2 1 2 1 2 2 1
+1 1 0 0 1 1 2 1 1 1 2 2 2 1 1 2 2 1 2 2 2 2 2 2 1 1
+1 2 0 0 2 1 1 1 1 2 2 2 1 2 2 2 1 1 2 1 2 1 2 1 1 2
+1 3 1 2 1 2 2 1 1 2 2 2 2 2 1 2 2 1 2 1 2 1 2 1 1 2
+2 1 0 0 1 1 1 1 1 1 1 1 1 1 2 2 2 2 2 2 1 2 2 2 1 1
+2 2 0 0 2 1 1 2 1 1 1 2 1 2 2 2 1 1 1 2 1 2 1 2 1 1
+2 3 1 2 1 2 1 2 1 1 1 2 1 2 2 2 2 1 2 2 1 2 2 2 1 1
+3 1 0 0 1 1 1 1 2 2 2 2 2 2 2 2 1 1 2 1 2 1 2 1 1 1
+3 2 0 0 2 1 2 1 1 2 2 2 2 2 1 2 2 1 1 1 1 1 1 1 1 2
+3 3 1 2 1 2 1 2 2 1 2 2 2 2 2 1 1 2 1 1 1 1 1 1 1 1
+4 1 0 0 1 1 2 2 1 1 2 2 2 2 1 1 2 2 2 2 2 2 2 2 1 1
+4 2 0 0 2 1 1 1 2 1 2 1 2 1 2 1 1 2 1 2 1 2 1 2 1 1
+4 3 1 2 2 2 2 1 1 1 2 1 2 1 1 1 2 2 2 2 2 2 2 2 1 1
+5 1 0 0 1 1 1 1 2 2 2 2 2 2 2 2 1 1 1 2 1 2 1 2 1 1
+5 2 0 0 2 1 1 2 2 1 2 2 2 2 2 1 1 2 1 2 1 2 1 2 1 1
+5 3 1 2 1 2 1 2 2 1 2 2 2 2 2 1 1 2 2 2 2 2 2 2 1 1
+6 1 0 0 1 1 1 1 2 1 2 2 2 1 2 2 1 1 1 2 1 2 1 2 1 1
+6 2 0 0 2 1 1 1 1 2 2 2 2 2 2 2 1 1 2 1 2 1 1 1 1 1
+6 3 1 2 1 2 1 1 1 1 2 2 1 2 2 2 1 1 2 2 2 2 2 1 1 1
+7 1 0 0 1 1 1 2 1 1 2 2 1 2 1 1 1 1 1 2 1 2 1 2 1 1
+7 2 0 0 2 1 2 1 1 2 2 2 2 2 1 2 1 1 2 2 2 2 2 2 1 1
+7 3 1 2 2 2 1 2 1 1 2 2 1 2 1 1 1 1 1 2 1 2 1 2 1 1
+8 1 0 0 1 1 1 2 1 1 1 2 1 2 2 1 1 2 2 1 2 1 2 1 1 2
+8 2 0 0 2 1 1 1 2 1 2 2 2 2 2 2 1 1 1 2 1 2 1 1 1 1
+8 3 1 2 2 2 2 1 1 2 2 2 2 2 1 2 2 1 1 1 1 1 1 1 2 1
+9 1 0 0 1 1 1 1 1 2 2 2 1 2 2 2 1 1 2 1 2 1 2 1 1 1
+9 2 0 0 2 1 2 1 1 1 2 1 2 1 1 1 2 2 2 2 2 2 2 2 1 1
+9 3 1 2 2 2 1 2 1 1 2 2 1 2 2 1 1 2 2 2 2 2 2 2 1 1
+10 1 0 0 1 1 1 1 1 2 1 2 1 2 1 2 2 1 2 1 2 1 2 2 1 1
+10 2 0 0 2 1 1 2 2 1 2 2 2 2 2 2 1 1 1 1 1 1 1 1 1 1
+10 3 1 2 1 2 1 1 1 2 1 2 1 2 1 2 2 1 2 1 2 1 2 1 1 1
+11 1 0 0 1 1 2 1 1 1 2 2 2 1 1 2 2 1 2 2 2 2 2 2 1 1
+11 2 0 0 2 1 1 2 1 1 1 2 1 2 2 1 2 2 2 2 1 2 2 2 1 1
+11 3 1 2 1 2 2 1 1 1 2 1 2 1 1 2 2 2 2 2 2 1 2 2 1 1
+12 1 0 0 1 1 1 1 1 2 2 2 1 2 2 2 1 1 2 1 2 1 2 2 1 1
+12 2 0 0 2 1 1 1 2 2 2 2 2 2 2 2 1 1 1 1 1 1 2 1 1 1
+12 3 1 2 2 2 1 1 1 2 2 2 1 2 2 2 1 1 2 1 2 1 2 1 1 1
+13 1 0 0 1 1 1 1 2 1 2 2 2 1 2 2 1 1 1 2 1 2 1 2 1 1
+13 2 0 0 2 1 1 1 1 2 1 2 1 2 2 2 2 1 2 1 1 1 2 1 1 1
+13 3 1 2 1 2 1 1 1 2 2 2 1 2 2 2 1 1 2 1 2 1 2 1 1 1
+14 1 0 0 1 1 1 2 2 1 2 2 2 1 2 1 1 2 1 2 1 2 1 2 1 1
+14 2 0 0 2 1 2 1 1 2 2 2 2 2 1 2 2 1 1 1 1 1 1 1 2 1
+14 3 1 2 2 2 2 1 1 2 2 2 1 2 1 2 2 1 2 1 2 1 2 1 1 1
+15 1 0 0 1 1 1 1 1 2 1 2 1 2 2 2 1 1 2 1 2 1 2 1 1 1
+15 2 0 0 2 1 1 2 2 1 2 2 2 2 2 1 1 2 1 2 1 2 1 2 1 1
+15 3 1 2 1 2 1 1 2 2 2 2 2 2 2 2 1 1 1 1 1 1 1 1 1 1
+16 1 0 0 1 1 1 1 2 2 2 2 2 2 2 2 1 1 2 1 2 1 2 1 1 1
+16 2 0 0 2 1 1 1 2 2 2 2 2 2 2 2 1 1 2 2 2 2 2 2 1 1
+16 3 1 2 1 2 1 1 2 2 2 2 2 2 2 2 1 1 2 2 2 2 2 2 1 1
+17 1 0 0 1 1 1 2 1 1 2 1 1 1 2 1 1 2 2 2 2 1 2 2 1 1
+17 2 0 0 2 1 1 1 1 2 1 2 1 2 2 2 1 1 1 2 1 2 1 2 1 1
+17 3 1 2 1 2 2 1 1 2 1 2 1 2 1 2 2 1 2 2 1 2 2 2 1 1
+18 1 0 0 1 1 1 1 2 1 2 2 2 1 2 2 1 1 2 2 2 2 2 2 1 1
+18 2 0 0 2 1 1 1 1 2 2 2 1 2 2 2 1 1 1 1 1 1 1 1 1 2
+18 3 1 2 1 2 1 1 2 1 2 2 2 1 2 2 1 1 2 1 2 1 2 1 1 1
+19 1 0 0 1 1 1 1 1 2 1 2 1 2 2 2 2 1 1 1 1 1 1 1 2 1
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+98 3 1 2 1 2 2 2 1 1 2 2 2 2 1 1 2 2 2 2 2 2 2 2 1 1
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diff --git a/trunk/test/create_file/phy-paml_file/fam19_0.gm b/trunk/test/create_file/phy-paml_file/fam19_0.gm
new file mode 100644
index 0000000000000000000000000000000000000000..7be2f406547782778fa6abbc9a2365c62a173b33
--- /dev/null
+++ b/trunk/test/create_file/phy-paml_file/fam19_0.gm
@@ -0,0 +1,11 @@
+MARKERID NAME LOCATION
+1 L1 0
+2 L2 1
+3 L3 2
+4 L4 3
+5 L5 4
+6 L6 5
+7 L7 6
+8 L8 7
+9 L9 8
+10 L10 9
diff --git a/trunk/test/create_file/phy-paml_file/fam19_0_H1_HAPLOTYPES b/trunk/test/create_file/phy-paml_file/fam19_0_H1_HAPLOTYPES
new file mode 100644
index 0000000000000000000000000000000000000000..2088f4e0e8a92427c96ea1be91299ca5df9c0cda
--- /dev/null
+++ b/trunk/test/create_file/phy-paml_file/fam19_0_H1_HAPLOTYPES
@@ -0,0 +1,119 @@
+HAPLOTYPE EXPLANATIONS with weight >= 0.05 UNDER H1, i.e. depending on disease status.
+
+For nuclear families:
+HAPLO1=father's transmitted haplotype.
+HAPLO2=father's nontransmitted haplotype.
+HAPLO3=mother's transmitted haplotype.
+HAPLO4=mother's nontransmitted haplotype.
+Transmission is assigned with respect to first affected child of the family.
+Haplotpyes are coded as a single integer. See outputfile.
+
+Selected loci: 1 2 3 4 5 6 7 8 9 10
+
+FID PID HAPLO1 HAPLO2 HAPLO3 HAPLO4 LIKELIHOOD_WEIGHT
+0 parental_haplotypes 721 721 174 224 1.000000
+1 parental_haplotypes 734 174 481 174 1.000000
+2 parental_haplotypes 58 62 750 32 1.000000
+3 parental_haplotypes 480 494 720 481 1.000000
+4 parental_haplotypes 734 734 30 480 1.000000
+5 parental_haplotypes 494 480 734 480 1.000000
+6 parental_haplotypes 174 480 236 480 1.000000
+7 parental_haplotypes 128 718 718 494 1.000000
+8 parental_haplotypes 721 46 480 236 1.000000
+9 parental_haplotypes 174 480 734 30 1.000000
+10 parental_haplotypes 30 482 480 736 1.000000
+11 parental_haplotypes 734 174 58 734 1.000000
+12 parental_haplotypes 174 482 480 482 1.000000
+13 parental_haplotypes 174 480 480 58 1.000000
+14 parental_haplotypes 670 480 480 721 1.000000
+15 parental_haplotypes 480 46 480 734 1.000000
+16 parental_haplotypes 494 480 494 494 1.000000
+17 parental_haplotypes 538 174 494 32 1.000000
+18 parental_haplotypes 174 494 480 161 0.681434
+18 parental_haplotypes 494 174 160 481 0.318566
+19 parental_haplotypes 49 480 734 174 1.000000
+20 parental_haplotypes 734 174 735 480 1.000000
+21 parental_haplotypes 481 734 160 750 1.000000
+22 parental_haplotypes 30 482 670 670 1.000000
+23 parental_haplotypes 494 480 494 480 1.000000
+24 parental_haplotypes 538 494 721 480 1.000000
+25 parental_haplotypes 174 721 735 32 1.000000
+26 parental_haplotypes 174 494 734 720 1.000000
+27 parental_haplotypes 734 174 480 538 1.000000
+28 parental_haplotypes 174 480 174 494 1.000000
+29 parental_haplotypes 718 481 718 494 1.000000
+30 parental_haplotypes 484 480 721 174 1.000000
+31 parental_haplotypes 174 30 750 174 1.000000
+32 parental_haplotypes 721 174 494 58 1.000000
+33 parental_haplotypes 734 174 480 720 1.000000
+34 parental_haplotypes 734 721 705 721 1.000000
+35 parental_haplotypes 734 734 224 58 1.000000
+36 parental_haplotypes 174 538 174 734 1.000000
+37 parental_haplotypes 480 160 494 750 1.000000
+38 parental_haplotypes 720 480 484 480 1.000000
+39 parental_haplotypes 718 49 721 58 1.000000
+40 parental_haplotypes 174 480 481 544 1.000000
+41 parental_haplotypes 538 481 721 718 1.000000
+42 parental_haplotypes 480 174 481 174 1.000000
+43 parental_haplotypes 494 30 732 734 1.000000
+44 parental_haplotypes 30 32 705 480 1.000000
+45 parental_haplotypes 734 480 734 480 1.000000
+46 parental_haplotypes 480 49 482 174 1.000000
+47 parental_haplotypes 705 481 734 480 1.000000
+48 parental_haplotypes 734 480 494 46 1.000000
+49 parental_haplotypes 721 736 721 705 1.000000
+50 parental_haplotypes 494 174 30 174 1.000000
+51 parental_haplotypes 174 734 538 46 1.000000
+52 parental_haplotypes 730 494 734 174 1.000000
+53 parental_haplotypes 481 160 46 734 1.000000
+54 parental_haplotypes 721 494 58 494 1.000000
+55 parental_haplotypes 58 174 544 482 1.000000
+56 parental_haplotypes 538 58 705 58 1.000000
+57 parental_haplotypes 558 480 30 494 1.000000
+58 parental_haplotypes 737 160 480 174 1.000000
+59 parental_haplotypes 734 481 721 174 0.857527
+59 parental_haplotypes 721 494 734 161 0.142473
+60 parental_haplotypes 174 58 30 480 1.000000
+61 parental_haplotypes 721 481 734 58 1.000000
+62 parental_haplotypes 734 735 734 480 1.000000
+63 parental_haplotypes 161 734 734 174 0.074654
+63 parental_haplotypes 721 174 174 734 0.925346
+64 parental_haplotypes 224 673 174 224 1.000000
+65 parental_haplotypes 718 174 544 480 1.000000
+66 parental_haplotypes 494 734 62 174 1.000000
+67 parental_haplotypes 480 174 494 720 0.450625
+67 parental_haplotypes 494 160 480 734 0.549375
+68 parental_haplotypes 718 32 484 174 1.000000
+69 parental_haplotypes 705 734 480 160 1.000000
+70 parental_haplotypes 538 480 494 161 1.000000
+71 parental_haplotypes 538 480 174 480 1.000000
+72 parental_haplotypes 538 32 705 481 1.000000
+73 parental_haplotypes 721 62 480 735 1.000000
+74 parental_haplotypes 494 494 480 480 1.000000
+75 parental_haplotypes 482 734 160 174 1.000000
+76 parental_haplotypes 174 58 174 494 1.000000
+77 parental_haplotypes 480 161 538 544 1.000000
+78 parental_haplotypes 538 174 480 480 1.000000
+79 parental_haplotypes 175 481 58 494 1.000000
+80 parental_haplotypes 480 480 734 720 1.000000
+81 parental_haplotypes 705 174 494 174 1.000000
+82 parental_haplotypes 734 482 718 480 1.000000
+83 parental_haplotypes 734 734 734 494 1.000000
+84 parental_haplotypes 494 32 718 174 1.000000
+85 parental_haplotypes 174 174 174 174 1.000000
+86 parental_haplotypes 480 494 734 160 0.617218
+86 parental_haplotypes 494 480 720 174 0.382782
+87 parental_haplotypes 538 58 480 174 1.000000
+88 parental_haplotypes 705 734 480 494 1.000000
+89 parental_haplotypes 494 480 161 480 1.000000
+90 parental_haplotypes 30 734 494 174 1.000000
+91 parental_haplotypes 734 160 494 174 1.000000
+92 parental_haplotypes 718 670 721 734 1.000000
+93 parental_haplotypes 128 480 174 46 1.000000
+94 parental_haplotypes 718 160 718 736 1.000000
+95 parental_haplotypes 174 734 736 494 1.000000
+96 parental_haplotypes 705 32 484 750 1.000000
+97 parental_haplotypes 174 494 30 174 1.000000
+98 parental_haplotypes 734 160 734 662 1.000000
+99 parental_haplotypes 480 544 494 481 1.000000
+
diff --git a/trunk/test/create_file/phy-paml_file/fam19_0_LDmeasuresCASES.xt b/trunk/test/create_file/phy-paml_file/fam19_0_LDmeasuresCASES.xt
new file mode 100644
index 0000000000000000000000000000000000000000..c31577a7ae585179c656e52466f4b923444baf41
--- /dev/null
+++ b/trunk/test/create_file/phy-paml_file/fam19_0_LDmeasuresCASES.xt
@@ -0,0 +1,46 @@
+M1 M2 Alleles1 Alleles2 NHAPLOTYPES dprime delta2 DFchisq chisquare
+1 2 2 2 200 1.000000 0.334187 1 66.837
+1 3 2 2 200 0.002933 0.000002 1 0.000
+1 4 2 2 200 0.452991 0.080837 1 16.167
+1 5 2 2 200 0.853249 0.671707 1 134.341
+1 6 2 2 200 0.631761 0.318491 1 63.698
+1 7 2 2 200 0.101981 0.005106 1 1.021
+1 8 2 2 200 0.055953 0.003007 1 0.601
+1 9 2 2 200 0.072351 0.002570 1 0.514
+1 10 2 2 200 0.580537 0.087377 1 17.475
+2 3 2 2 200 1.000000 0.074923 1 14.985
+2 4 2 2 200 1.000000 0.196661 1 39.332
+2 5 2 2 200 1.000000 0.362211 1 72.442
+2 6 2 2 200 1.000000 0.266674 1 53.335
+2 7 2 2 200 0.401341 0.109652 1 21.930
+2 8 2 2 200 0.208701 0.022642 1 4.528
+2 9 2 2 200 0.346168 0.081576 1 16.315
+2 10 2 2 200 0.507389 0.022305 1 4.461
+3 4 2 2 200 1.000000 0.380974 1 76.195
+3 5 2 2 200 0.330493 0.022593 1 4.519
+3 6 2 2 200 0.786724 0.173891 1 34.778
+3 7 2 2 200 0.741935 0.060584 1 12.117
+3 8 2 2 200 0.308756 0.022256 1 4.451
+3 9 2 2 200 0.741935 0.060584 1 12.117
+3 10 2 2 200 0.815668 0.025887 1 5.177
+4 5 2 2 200 0.214403 0.019627 1 3.925
+4 6 2 2 200 0.084552 0.005272 1 1.054
+4 7 2 2 200 0.655661 0.124191 1 24.838
+4 8 2 2 200 0.147089 0.008185 1 1.637
+4 9 2 2 200 0.655661 0.124191 1 24.838
+4 10 2 2 200 0.729701 0.054382 1 10.876
+5 6 2 2 200 0.832816 0.510643 1 102.129
+5 7 2 2 200 0.196932 0.020635 1 4.127
+5 8 2 2 200 0.025432 0.000451 1 0.090
+5 9 2 2 200 0.168563 0.015118 1 3.024
+5 10 2 2 200 0.510800 0.062411 1 12.482
+6 7 2 2 200 0.382004 0.057165 1 11.433
+6 8 2 2 200 0.012390 0.000128 1 0.026
+6 9 2 2 200 0.348248 0.047508 1 9.502
+6 10 2 2 200 0.193641 0.012183 1 2.437
+7 8 2 2 200 0.904762 0.625108 1 125.022
+7 9 2 2 200 0.957333 0.916487 1 183.297
+7 10 2 2 200 0.862857 0.263215 1 52.643
+8 9 2 2 200 0.857143 0.561039 1 112.208
+8 10 2 2 200 0.846939 0.193653 1 38.731
+9 10 2 2 200 0.862857 0.263215 1 52.643
diff --git a/trunk/test/create_file/phy-paml_file/fam19_0_LDmeasuresCONTROLS.xt b/trunk/test/create_file/phy-paml_file/fam19_0_LDmeasuresCONTROLS.xt
new file mode 100644
index 0000000000000000000000000000000000000000..6a5d2328be1bdf705d364f2bc56c16c8a3e1dd3e
--- /dev/null
+++ b/trunk/test/create_file/phy-paml_file/fam19_0_LDmeasuresCONTROLS.xt
@@ -0,0 +1,46 @@
+M1 M2 Alleles1 Alleles2 NHAPLOTYPES dprime delta2 DFchisq chisquare
+1 2 2 2 200 1.000000 0.176574 1 35.315
+1 3 2 2 200 0.392097 0.010018 1 2.004
+1 4 2 2 200 0.554676 0.071298 1 14.260
+1 5 2 2 200 0.901961 0.662078 1 132.416
+1 6 2 2 200 0.628731 0.354774 1 70.955
+1 7 2 2 200 0.210021 0.012016 1 2.403
+1 8 2 2 200 0.252254 0.021605 1 4.321
+1 9 2 2 200 0.204515 0.010095 1 2.019
+1 10 2 2 200 0.204319 0.017659 1 3.532
+2 3 2 2 200 1.000000 0.121928 1 24.386
+2 4 2 2 200 1.000000 0.433623 1 86.725
+2 5 2 2 200 1.000000 0.143701 1 28.740
+2 6 2 2 200 1.000000 0.196745 1 39.349
+2 7 2 2 200 0.497517 0.160440 1 32.088
+2 8 2 2 200 0.439335 0.100379 1 20.076
+2 9 2 2 200 0.377665 0.104344 1 20.869
+2 10 2 2 200 0.053484 0.000647 1 0.129
+3 4 2 2 200 1.000000 0.281184 1 56.237
+3 5 2 2 200 0.285714 0.004329 1 0.866
+3 6 2 2 200 0.386385 0.092521 1 18.504
+3 7 2 2 200 0.209726 0.008274 1 1.655
+3 8 2 2 200 0.398496 0.030477 1 6.095
+3 9 2 2 200 0.155844 0.004048 1 0.810
+3 10 2 2 200 0.503106 0.006977 1 1.395
+4 5 2 2 200 0.534884 0.053958 1 10.792
+4 6 2 2 200 0.002408 0.000003 1 0.001
+4 7 2 2 200 0.356991 0.085257 1 17.051
+4 8 2 2 200 0.180721 0.027232 1 5.446
+4 9 2 2 200 0.339576 0.068349 1 13.670
+4 10 2 2 200 0.411136 0.016570 1 3.314
+5 6 2 2 200 0.899329 0.590736 1 118.147
+5 7 2 2 200 0.444115 0.043727 1 8.745
+5 8 2 2 200 0.454732 0.057137 1 11.427
+5 9 2 2 200 0.463032 0.042114 1 8.423
+5 10 2 2 200 0.184783 0.017747 1 3.549
+6 7 2 2 200 0.522293 0.082801 1 16.560
+6 8 2 2 200 0.161508 0.009868 1 1.974
+6 9 2 2 200 0.534286 0.076771 1 15.354
+6 10 2 2 200 0.182959 0.012708 1 2.542
+7 8 2 2 200 0.977604 0.766800 1 153.360
+7 9 2 2 200 0.978559 0.848432 1 169.686
+7 10 2 2 200 0.835931 0.102394 1 20.479
+8 9 2 2 200 0.976077 0.677278 1 135.456
+8 10 2 2 200 0.816934 0.078463 1 15.693
+9 10 2 2 200 0.844720 0.118009 1 23.602
diff --git a/trunk/test/create_file/phy-paml_file/nb_cas_control.txt b/trunk/test/create_file/phy-paml_file/nb_cas_control.txt
new file mode 100644
index 0000000000000000000000000000000000000000..0fcc5d715cf67c32674f580140c8b7edb315f08b
--- /dev/null
+++ b/trunk/test/create_file/phy-paml_file/nb_cas_control.txt
@@ -0,0 +1,35 @@
+H019 m003 c003
+H026 m001 c000
+H004 m011 c002
+H020 m005 c009
+H034 m001 c000
+H027 m001 c002
+H023 m001 c005
+H016 m002 c002
+H002 m009 c003
+H015 m002 c006
+H006 m023 c019
+H001 m024 c039
+H010 m001 c003
+H028 m004 c000
+H024 m001 c000
+H017 m000 c008
+H009 m005 c010
+H007 m025 c036
+H033 m000 c001
+H008 m028 c019
+H029 m001 c003
+H003 m002 c000
+H035 m001 c000
+H013 m015 c005
+H032 m000 c001
+H025 m002 c003
+H021 m011 c002
+H030 m001 c001
+H031 m001 c000
+H012 m001 c002
+H005 m002 c002
+H011 m003 c008
+H022 m009 c001
+H014 m002 c003
+H018 m002 c002
diff --git a/trunk/test/create_file/phy-paml_file/trio.fmh b/trunk/test/create_file/phy-paml_file/trio.fmh
new file mode 100644
index 0000000000000000000000000000000000000000..8f0265cbf81097de63138bccdf47b319d483223e
--- /dev/null
+++ b/trunk/test/create_file/phy-paml_file/trio.fmh
@@ -0,0 +1,136 @@
+File fam19_0 passed to main function.
+
+command: /home/cbardel/FAMHAP/FAMHAP15/famhap15 fam19_0 trio.fmh dp P
+
+Input seems to have no column headings. Program proceeds.
+Infile has 26 columns. It is assumed to have 10 marker(s).
+300 individuals were read.
+100 families were read.
+
+Mendel Check successful. No distortions encountered.
+
+The following loci were selected: 1 2 3 4 5 6 7 8 9 10
+Only families fully genotyped at these loci will be included into the frequency estimation.
+
+independent case chromosomes: 200 control chromosomes: 200
+Internal Recoding.
+
+CODING MARKER 1.
+Allele 0 Code 0
+Allele 1 Code 1
+Allele 2 Code 2
+
+CODING MARKER 2.
+Allele 0 Code 0
+Allele 1 Code 1
+Allele 2 Code 2
+
+CODING MARKER 3.
+Allele 0 Code 0
+Allele 1 Code 1
+Allele 2 Code 2
+
+CODING MARKER 4.
+Allele 0 Code 0
+Allele 1 Code 1
+Allele 2 Code 2
+
+CODING MARKER 5.
+Allele 0 Code 0
+Allele 1 Code 1
+Allele 2 Code 2
+
+CODING MARKER 6.
+Allele 0 Code 0
+Allele 1 Code 1
+Allele 2 Code 2
+
+CODING MARKER 7.
+Allele 0 Code 0
+Allele 1 Code 1
+Allele 2 Code 2
+
+CODING MARKER 8.
+Allele 0 Code 0
+Allele 1 Code 1
+Allele 2 Code 2
+
+CODING MARKER 9.
+Allele 0 Code 0
+Allele 1 Code 1
+Allele 2 Code 2
+
+CODING MARKER 10.
+Allele 0 Code 0
+Allele 1 Code 1
+Allele 2 Code 2
+
+HAPLOTYPE ESTIMATION WITH DOUBLED PARAMETER SET:
+
+Selected loci: 1 2 3 4 5 6 7 8 9 10
+Number of alleles at the loci: 2 2 2 2 2 2 2 2 2 2
+
+Haplotype parameters at beginning (not doubled): 1024
+
+Loglikelihood -1105.715154
+
+9 iterations were performed.
+
+1 1 1 1 1 2 2 2 2 1 HaploiD: 30 FreqAff 0.045000 FreqUnaff 0.015000
+1 1 1 1 2 1 1 1 1 1 HaploiD: 32 FreqAff 0.000000 FreqUnaff 0.040000
+1 1 1 1 2 1 2 2 2 1 HaploiD: 46 FreqAff 0.005000 FreqUnaff 0.025000
+1 1 1 1 2 2 1 1 1 2 HaploiD: 49 FreqAff 0.005000 FreqUnaff 0.010000
+1 1 1 1 2 2 2 1 2 1 HaploiD: 58 FreqAff 0.025000 FreqUnaff 0.050000
+1 1 1 1 2 2 2 2 2 1 HaploiD: 62 FreqAff 0.005000 FreqUnaff 0.010000
+1 1 2 1 1 1 1 1 1 1 HaploiD: 128 FreqAff 0.010000 FreqUnaff 0.000000
+1 1 2 1 2 1 1 1 1 1 HaploiD: 160 FreqAff 0.011593 FreqUnaff 0.040833
+1 1 2 1 2 1 1 1 1 2 HaploiD: 161 FreqAff 0.005373 FreqUnaff 0.014119
+1 1 2 1 2 1 2 2 2 1 HaploiD: 174 FreqAff 0.128034 FreqUnaff 0.180048
+1 1 2 1 2 1 2 2 2 2 HaploiD: 175 FreqAff 0.005000 FreqUnaff 0.000000
+1 1 2 2 2 1 1 1 1 1 HaploiD: 224 FreqAff 0.010000 FreqUnaff 0.010000
+1 1 2 2 2 1 2 2 1 1 HaploiD: 236 FreqAff 0.005000 FreqUnaff 0.005000
+1 2 2 2 2 1 1 1 1 1 HaploiD: 480 FreqAff 0.126493 FreqUnaff 0.191914
+1 2 2 2 2 1 1 1 1 2 HaploiD: 481 FreqAff 0.025000 FreqUnaff 0.045881
+1 2 2 2 2 1 1 1 2 1 HaploiD: 482 FreqAff 0.010000 FreqUnaff 0.030000
+1 2 2 2 2 1 1 2 1 1 HaploiD: 484 FreqAff 0.020000 FreqUnaff 0.000000
+1 2 2 2 2 1 2 2 2 1 HaploiD: 494 FreqAff 0.108507 FreqUnaff 0.097205
+2 1 1 1 1 2 2 1 2 1 HaploiD: 538 FreqAff 0.055000 FreqUnaff 0.010000
+2 1 1 1 2 1 1 1 1 1 HaploiD: 544 FreqAff 0.010000 FreqUnaff 0.015000
+2 1 1 1 2 1 2 2 2 1 HaploiD: 558 FreqAff 0.005000 FreqUnaff 0.000000
+2 1 2 1 1 2 1 2 2 1 HaploiD: 662 FreqAff 0.000000 FreqUnaff 0.005000
+2 1 2 1 1 2 2 2 2 1 HaploiD: 670 FreqAff 0.010000 FreqUnaff 0.010000
+2 1 2 1 2 1 1 1 1 2 HaploiD: 673 FreqAff 0.000000 FreqUnaff 0.005000
+2 1 2 2 1 1 1 1 1 2 HaploiD: 705 FreqAff 0.045000 FreqUnaff 0.005000
+2 1 2 2 1 1 2 2 2 1 HaploiD: 718 FreqAff 0.055000 FreqUnaff 0.010000
+2 1 2 2 1 2 1 1 1 1 HaploiD: 720 FreqAff 0.011914 FreqUnaff 0.017253
+2 1 2 2 1 2 1 1 1 2 HaploiD: 721 FreqAff 0.074627 FreqUnaff 0.025000
+2 1 2 2 1 2 2 1 2 1 HaploiD: 730 FreqAff 0.005000 FreqUnaff 0.000000
+2 1 2 2 1 2 2 2 1 1 HaploiD: 732 FreqAff 0.005000 FreqUnaff 0.000000
+2 1 2 2 1 2 2 2 2 1 HaploiD: 734 FreqAff 0.143459 FreqUnaff 0.092747
+2 1 2 2 1 2 2 2 2 2 HaploiD: 735 FreqAff 0.010000 FreqUnaff 0.010000
+2 1 2 2 2 1 1 1 1 1 HaploiD: 736 FreqAff 0.005000 FreqUnaff 0.015000
+2 1 2 2 2 1 1 1 1 2 HaploiD: 737 FreqAff 0.005000 FreqUnaff 0.000000
+2 1 2 2 2 1 2 2 2 1 HaploiD: 750 FreqAff 0.010000 FreqUnaff 0.015000
+
+200 independent case chromosomes could be incorporated into the analysis.
+200 independent control chromosomes could be incorporated into the analysis.
+
+
+
+The following families could be incorporated into the estimation:
+0 1 2 3 4 5 6 7 8 9 10 11 12
+13 14 15 16 17 18 19 20 21 22 23 24 25
+26 27 28 29 30 31 32 33 34 35 36 37 38
+39 40 41 42 43 44 45 46 47 48 49 50 51
+52 53 54 55 56 57 58 59 60 61 62 63 64
+65 66 67 68 69 70 71 72 73 74 75 76 77
+78 79 80 81 82 83 84 85 86 87 88 89 90
+91 92 93 94 95 96 97 98 99
+
+All families could be incorporated.
+
+
+NUMBER OF PARAMETERS DIFFERENT FROM ZERO-1 = 34.
+
+Total number of haplotype explanations:290
+
diff --git a/trunk/test/create_file/phy-paml_file/trio.prephy b/trunk/test/create_file/phy-paml_file/trio.prephy
new file mode 100644
index 0000000000000000000000000000000000000000..dc52120ff8eff551e11812f8b38f5ca4087d5869
--- /dev/null
+++ b/trunk/test/create_file/phy-paml_file/trio.prephy
@@ -0,0 +1,36 @@
+ 36 11
+H019 2122121111
+H026 2111212221
+H004 2122112221
+H020 1222211112
+H034 2122211112
+H027 1111221112
+H023 1111212221
+H016 2121122221
+H002 1111122221
+H015 1222211121
+H006 1222212221
+H001 1222211111
+H010 1121211112
+H028 1222211211
+H024 2122122211
+H017 1111211111
+H009 1111222121
+H007 1121212221
+H033 2121211112
+H008 2122122221
+H029 2122211111
+H003 1121111111
+H035 1121212222
+H013 2122121112
+H032 2121121221
+H025 2122212221
+H021 2111122121
+H030 1122212211
+H031 2122122121
+H012 1111222221
+H005 2122122222
+H011 1121211111
+H022 2122111112
+H014 2111211111
+H018 1122211111
diff --git a/trunk/test/paml/unrooted_absent/association/1_trio_ML.asso b/trunk/test/paml/unrooted_absent/association/1_trio_ML.asso
new file mode 100644
index 0000000000000000000000000000000000000000..077f5d6e37d7a458fbafe8a9a7c9b06b48dfadbd
--- /dev/null
+++ b/trunk/test/paml/unrooted_absent/association/1_trio_ML.asso
@@ -0,0 +1,118 @@
+
+ /----* H006 case/control:23/19
+ | Site: 2 Sens: C-->G
+ | /----* H031 case/control:1/0
+ | | Site: 8 Sens: G-->C
+ | |----* H005 case/control:2/2
+ | | Site: 10 Sens: C-->G
+ | | /----* H032 case/control:0/1
+ | | | Site: 7 Sens: G-->C
+ | |----* 68 case/control:2/3
+ | | | Site: 4 Sens: G-->C
+ | | \----* H016 case/control:2/2
+ | /----* 64+(65+(66+(67))) case/control:34/24
+ | | | Site: 6 Sens: C-->G
+ | | |----* H008 case/control:28/19
+ | | \----* H024 case/control:1/0
+ | | Site: 9 Sens: G-->C
+ | /----* 63 case/control:45/26
+ | | | Site: 5 Sens: G-->C
+ | | \----* H004 case/control:11/2
+ |----* 62 case/control:47/29
+ | | Site: 1 Sens: C-->G
+ | \----* H025 case/control:2/3
+-----* 60+(61)+(42) case/control:200/200
+ |
+ | [0] ddl=3 chi2=6.69 p_value_chi2=0.0824
+ | [1] ddl=7 chi2=11.30 p_value_chi2=0.102
+ | [2] ddl=11 chi2=24.02 p_value_chi2=0.007
+ | [3] ddl=20 chi2=39.11 p_value_chi2=0.001
+ | [4] ddl=24 chi2=54.71 p_value_chi2=0.001
+ | [5] ddl=28 chi2=63.21 p_value_chi2=0
+ | [6] ddl=32 chi2=65.94 p_value_chi2=0
+ | [7] ddl=33 chi2=67.18 p_value_chi2=0
+ | [8] ddl=34 chi2=68.34 p_value_chi2=0
+ | /----* H010 case/control:1/3
+ | /----* 53 case/control:1/4
+ | | | Site: 10 Sens: C-->G
+ | | \----* H033 case/control:0/1
+ | | Site: 1 Sens: C-->G
+ | | /----* H027 case/control:1/2
+ | | | Site: 6 Sens: C-->G
+ | | | Site: 10 Sens: C-->G
+ | | |----* H017 case/control:0/8
+ | |----* 54+(55) case/control:3/13
+ | | | Site: 3 Sens: G-->C
+ | | \----* H014 case/control:2/3
+ | | Site: 1 Sens: C-->G
+ | /----* 50+(51+(52)) case/control:9/25
+ | | | Site: 4 Sens: G-->C
+ | | |----* H011 case/control:3/8
+ | | \----* H003 case/control:2/0
+ | | Site: 5 Sens: G-->C
+ | |----* H018 case/control:2/2
+ | /----* 48+(49) case/control:40/39
+ | | | Site: 2 Sens: G-->C
+ | | | /----* H022 case/control:9/1
+ | | | /----* 58 case/control:27/9
+ | | | | | Site: 5 Sens: G-->C
+ | | | | | /----* H013 case/control:15/5
+ | | | | \----* 59 case/control:18/8
+ | | | | | Site: 6 Sens: C-->G
+ | | | | \----* H019 case/control:3/3
+ | | | | Site: 10 Sens: G-->C
+ | | | /----* 57 case/control:28/9
+ | | | | | Site: 10 Sens: C-->G
+ | | | | \----* H034 case/control:1/0
+ | | \----* 56 case/control:29/12
+ | | | Site: 1 Sens: C-->G
+ | | \----* H029 case/control:1/3
+ | |----* H020 case/control:5/9
+ | | Site: 10 Sens: C-->G
+ | /----* 45+(46+(47)) case/control:71/93
+ | | | Site: 8 Sens: G-->C
+ | | |----* H001 case/control:24/39
+ | | \----* H015 case/control:2/6
+ | | Site: 9 Sens: C-->G
+ | /----* 44 case/control:75/93
+ | | | Site: 7 Sens: G-->C
+ | | | Site: 2 Sens: C-->G
+ | | \----* H028 case/control:4/0
+ |----* 43 case/control:76/94
+ | | Site: 9 Sens: G-->C
+ | \----* H030 case/control:1/1
+ | /----* H035 case/control:1/0
+ | | Site: 10 Sens: C-->G
+ | |----* H007 case/control:25/36
+ \----* 41+(40) case/control:54/58
+ | Site: 4 Sens: G-->C
+ | /----* H026 case/control:1/0
+ | | Site: 1 Sens: C-->G
+ | |----* H023 case/control:1/5
+ \----* 39+(69) case/control:28/22
+ | Site: 3 Sens: G-->C
+ | /----* H012 case/control:1/2
+ | | /----* H021 case/control:11/2
+ | | | Site: 8 Sens: G-->C
+ | | | Site: 1 Sens: C-->G
+ | |----* 70 case/control:20/5
+ | | | Site: 5 Sens: G-->C
+ | | \----* H002 case/control:9/3
+ \----* 38+(37) case/control:26/17
+ | Site: 6 Sens: C-->G
+ \----* H009 case/control:5/10
+ Site: 8 Sens: G-->C
+
+ Number of permutation: 1
+
+p_val for each level:
+level 1 p-value (non corrected) 0
+level 2 p-value (non corrected) 0
+level 3 p-value (non corrected) 0
+level 4 p-value (non corrected) 0
+level 5 p-value (non corrected) 0
+level 6 p-value (non corrected) 0
+level 7 p-value (non corrected) 0
+level 8 p-value (non corrected) 0
+level 9 p-value (non corrected) 0
+corrected minimal p_value in the tree: 0
diff --git a/trunk/test/paml/unrooted_absent/association/2base.t b/trunk/test/paml/unrooted_absent/association/2base.t
new file mode 100644
index 0000000000000000000000000000000000000000..3c69e532ef866ce4c66f2a5be8a28ec7de0e004c
--- /dev/null
+++ b/trunk/test/paml/unrooted_absent/association/2base.t
@@ -0,0 +1,37 @@
+ 36
+H019
+H026 9.0000
+H004 nan nan
+H020 9.0000 9.0000 9.0000
+H034 nan 9.0000 9.0000 nan
+H027 9.0000 9.0000 9.0000 nan nan
+H023 9.0000 nan nan 9.0000 9.0000 9.0000
+H016 nan nan nan 9.0000 9.0000 9.0000 nan
+H002 9.0000 nan nan 9.0000 9.0000 9.0000 nan nan
+H015 9.0000 9.0000 9.0000 nan nan 9.0000 9.0000 9.0000 9.0000
+H006 9.0000 nan nan nan 9.0000 9.0000 nan 9.0000 9.0000 nan
+H001 nan 9.0000 9.0000 nan nan 9.0000 9.0000 9.0000 9.0000 nan nan
+H010 9.0000 9.0000 9.0000 nan nan nan 9.0000 9.0000 9.0000 nan 9.0000 nan
+H028 9.0000 9.0000 9.0000 nan nan 9.0000 9.0000 9.0000 9.0000 nan nan nan nan
+H024 nan 9.0000 nan 9.0000 9.0000 9.0000 9.0000 nan nan 9.0000 9.0000 9.0000 9.0000 9.0000
+H017 9.0000 nan 9.0000 nan nan nan nan 9.0000 9.0000 nan 9.0000 nan nan nan 9.0000
+H009 9.0000 nan 9.0000 9.0000 9.0000 nan nan nan nan 9.0000 9.0000 9.0000 9.0000 9.0000 9.0000 nan
+H007 9.0000 nan nan 9.0000 9.0000 9.0000 nan nan nan nan nan 9.0000 nan nan 9.0000 nan nan
+H033 nan 9.0000 9.0000 nan nan nan 9.0000 9.0000 9.0000 9.0000 9.0000 nan nan 9.0000 9.0000 nan 9.0000 9.0000
+H008 nan nan nan 9.0000 9.0000 9.0000 9.0000 nan nan 9.0000 nan 9.0000 9.0000 9.0000 nan 9.0000 9.0000 nan 9.0000
+H029 nan 9.0000 nan nan nan 9.0000 9.0000 9.0000 9.0000 nan 9.0000 nan nan nan nan nan 9.0000 9.0000 nan 9.0000
+H003 nan 9.0000 9.0000 nan nan 9.0000 9.0000 9.0000 9.0000 nan 9.0000 nan nan nan 9.0000 9.0000 9.0000 nan nan 9.0000 nan
+H035 9.0000 nan nan 9.0000 9.0000 9.0000 nan nan nan 9.0000 nan 9.0000 nan 9.0000 9.0000 9.0000 nan nan nan 9.0000 9.0000 9.0000
+H013 nan 9.0000 9.0000 nan nan nan 9.0000 9.0000 9.0000 9.0000 9.0000 9.0000 nan 9.0000 nan 9.0000 9.0000 9.0000 nan nan nan nan 9.0000
+H032 nan nan nan 9.0000 9.0000 9.0000 9.0000 nan nan 9.0000 9.0000 9.0000 9.0000 9.0000 nan 9.0000 9.0000 nan 9.0000 nan 9.0000 nan 9.0000 nan
+H025 9.0000 nan nan 9.0000 nan 9.0000 nan nan 9.0000 nan nan 9.0000 9.0000 nan nan 9.0000 9.0000 nan 9.0000 nan nan 9.0000 nan 9.0000 nan
+H021 nan nan nan 9.0000 9.0000 9.0000 nan nan nan 9.0000 9.0000 9.0000 9.0000 9.0000 nan 9.0000 nan 9.0000 9.0000 nan 9.0000 9.0000 9.0000 9.0000 nan 9.0000
+H030 9.0000 nan nan nan nan 9.0000 nan 9.0000 9.0000 nan nan nan nan nan nan nan 9.0000 nan 9.0000 nan nan nan nan 9.0000 9.0000 nan 9.0000
+H031 nan 9.0000 nan 9.0000 9.0000 9.0000 9.0000 nan nan 9.0000 9.0000 9.0000 9.0000 9.0000 nan 9.0000 nan 9.0000 9.0000 nan nan 9.0000 9.0000 nan nan nan nan 9.0000
+H012 9.0000 nan 9.0000 9.0000 9.0000 nan nan nan nan 9.0000 nan 9.0000 9.0000 9.0000 9.0000 nan nan nan 9.0000 nan 9.0000 9.0000 nan 9.0000 nan nan nan nan 9.0000
+H005 nan 9.0000 nan 9.0000 9.0000 9.0000 9.0000 nan nan 9.0000 9.0000 9.0000 9.0000 9.0000 nan 9.0000 9.0000 9.0000 9.0000 nan 9.0000 9.0000 nan nan nan nan nan 9.0000 nan 9.0000
+H011 nan 9.0000 9.0000 nan nan nan nan 9.0000 9.0000 nan 9.0000 nan nan nan 9.0000 nan nan nan nan 9.0000 nan nan nan 9.0000 9.0000 9.0000 9.0000 nan 9.0000 9.0000 9.0000
+H022 nan 9.0000 nan nan nan 9.0000 9.0000 9.0000 9.0000 9.0000 9.0000 nan nan 9.0000 nan 9.0000 9.0000 9.0000 nan 9.0000 nan nan 9.0000 nan 9.0000 9.0000 9.0000 9.0000 nan 9.0000 nan nan
+H014 nan nan 9.0000 9.0000 nan nan nan 9.0000 9.0000 9.0000 9.0000 nan nan 9.0000 9.0000 nan nan 9.0000 nan 9.0000 nan 9.0000 9.0000 9.0000 9.0000 9.0000 nan 9.0000 9.0000 9.0000 9.0000 nan nan
+H018 nan 9.0000 9.0000 nan nan nan 9.0000 9.0000 9.0000 nan nan nan nan nan 9.0000 nan 9.0000 nan nan 9.0000 nan nan 9.0000 nan 9.0000 nan 9.0000 nan 9.0000 9.0000 9.0000 nan nan nan
+OUTG 9.0000 nan nan 9.0000 9.0000 9.0000 nan nan nan nan nan nan 9.0000 nan nan 9.0000 nan nan 9.0000 nan nan 9.0000 nan 9.0000 9.0000 nan 9.0000 nan nan nan nan nan 9.0000 9.0000 nan
diff --git a/trunk/test/paml/unrooted_absent/association/baseml.ctl b/trunk/test/paml/unrooted_absent/association/baseml.ctl
new file mode 100644
index 0000000000000000000000000000000000000000..e0489c8d6735b0baf74dbdff84e9edcd71f40c83
--- /dev/null
+++ b/trunk/test/paml/unrooted_absent/association/baseml.ctl
@@ -0,0 +1,34 @@
+ seqfile = trio2.phy
+ treefile = trio2.phy_phyml_tree.txt
+
+ outfile = mlb * main result file
+ noisy = 9 * 0,1,2,3: how much rubbish on the screen
+ verbose = 1 * 1: detailed output, 0: concise output
+ runmode = 0 * 0: user tree; 1: semi-automatic; 2: automatic
+ * 3: StepwiseAddition; (4,5):PerturbationNNI
+
+ model = 7 * 0:JC69, 1:K80, 2:F81, 3:F84, 4:HKY85
+ * 5:T92, 6:TN93, 7:REV, 8:UNREST, 9:REVu; 10:UNRESTu
+
+ Mgene = 0 * 0:rates, 1:separate; 2:diff pi, 3:diff kapa, 4:all diff
+
+* ndata = 1
+ clock = 1 * 0:no clock, 1:clock; 2:local clock; 3:CombinedAnalysis
+ fix_kappa = 0 * 0: estimate kappa; 1: fix kappa at value below
+ kappa = 5 * initial or fixed kappa
+
+ fix_alpha = 1 * 0: estimate alpha; 1: fix alpha at value below
+ alpha = 0 * initial or fixed alpha, 0:infinity (constant rate)
+ Malpha = 0 * 1: different alpha's for genes, 0: one alpha
+ ncatG = 5 * # of categories in the dG, AdG, or nparK models of rates
+ nparK = 0 * rate-class models. 1:rK, 2:rK&fK, 3:rK&MK(1/K), 4:rK&MK
+
+ nhomo = 0 * 0 & 1: homogeneous, 2: kappa for branches, 3: N1, 4: N2
+ getSE = 0 * 0: don't want them, 1: want S.E.s of estimates
+ RateAncestor = 1 * (0,1,2): rates (alpha>0) or ancestral states
+
+ Small_Diff = 7e-6
+ cleandata = 0 * remove sites with ambiguity data (1:yes, 0:no)?
+* icode = 0 * (with RateAncestor=1. try "GC" in data,model=4,Mgene=4)
+* fix_blength = -1 * 0: ignore, -1: random, 1: initial, 2: fixed
+ method = 0 * 0: simultaneous; 1: one branch at a time
diff --git a/trunk/test/paml/unrooted_absent/association/lnf b/trunk/test/paml/unrooted_absent/association/lnf
new file mode 100644
index 0000000000000000000000000000000000000000..85a4532d42e3b7aa9a1d6dd89d6564cb0536ebd7
--- /dev/null
+++ b/trunk/test/paml/unrooted_absent/association/lnf
@@ -0,0 +1,15 @@
+ -1 10 10
+
+
+ 1
+
+ 1 1 -21.7701316508 0.0000 GGGCGCCGCCCCCCGCCCGGGCCGGGGCGCGCGGCC
+ 2 1 -13.4855220119 0.0000 CCCGCCCCCGGGCGCCCCCCCCCCCCCCCCCCCCCC
+ 3 1 -11.8101938263 0.0001 GCGGGCCGCGGGGGGCCGGGGGGGGGCGGCGGGCGG
+ 4 1 -15.5093284894 0.0000 GCGGGCCCCGGGCGGCCCCGGCCGCGCGGCGCGCGG
+ 5 1 -15.9586997510 0.0000 CGCGGGGCCGGGGGCGGGGCGCGCCGCGCGCGCGGG
+ 6 1 -18.0353689751 0.0000 GCCCCGCGGCCCCCGCGCCGCCCGGCGCGGGCCCCC
+ 7 1 -11.7888575463 0.0001 CGGCCCGGGCGCCCGCGGCGCCGCCGGGGGGCCCCG
+ 8 1 -14.6248990790 0.0000 CGGCCCGGGCGCCGGCCGCGCCGCGGCGCGGCCCCG
+ 9 1 -13.6573284377 0.0000 CGGCCCGGGGGCCCCCGGCGCCGCGGGCGGGCCCCG
+ 10 1 -24.9555331769 0.0000 CCCGGGCCCCCCGCCCCCGCCCGGCCCCCCGCGCCC
\ No newline at end of file
diff --git a/trunk/test/paml/unrooted_absent/association/mlb b/trunk/test/paml/unrooted_absent/association/mlb
new file mode 100644
index 0000000000000000000000000000000000000000..0dbb9e13324bf978cbbf65607724599ed79da940
--- /dev/null
+++ b/trunk/test/paml/unrooted_absent/association/mlb
@@ -0,0 +1,194 @@
+
+seed used = 30455833
+
+H019 GCGGCGCCCC
+H026 GCCCGCGGGC
+H004 GCGGCCGGGC
+H020 CGGGGCCCCG
+H034 GCGGGCCCCG
+H027 CCCCGGCCCG
+H023 CCCCGCGGGC
+H016 GCGCCGGGGC
+H002 CCCCCGGGGC
+H015 CGGGGCCCGC
+H006 CGGGGCGGGC
+H001 CGGGGCCCCC
+H010 CCGCGCCCCG
+H028 CGGGGCCGCC
+H024 GCGGCGGGCC
+H017 CCCCGCCCCC
+H009 CCCCGGGCGC
+H007 CCGCGCGGGC
+H033 GCGCGCCCCG
+H008 GCGGCGGGGC
+H029 GCGGGCCCCC
+H003 CCGCCCCCCC
+H035 CCGCGCGGGG
+H013 GCGGCGCCCG
+H032 GCGCCGCGGC
+H025 GCGGGCGGGC
+H021 GCCCCGGCGC
+H030 CCGGGCGGCC
+H031 GCGGCGGCGC
+H012 CCCCGGGGGC
+H005 GCGGCGGGGG
+H011 CCGCGCCCCC
+H022 GCGGCCCCCG
+H014 GCCCGCCCCC
+H018 CCGGGCCCCC
+OUTG CCGGGCGGGC
+
+
+BASEML (in paml 3.14, January 2004) trio2.phy REV Global clock
+ns = 36 ls = 10
+# site patterns = 10
+ 1 1 1 1 1 1 1 1 1 1
+
+H019 GCGGCGCCCC
+H026 ..CCGCGGG.
+H004 .....CGGG.
+H020 CG..GC...G
+H034 ....GC...G
+H027 C.CCG....G
+H023 C.CCGCGGG.
+H016 ...C..GGG.
+H002 C.CC..GGG.
+H015 CG..GC..G.
+H006 CG..GCGGG.
+H001 CG..GC....
+H010 C..CGC...G
+H028 CG..GC.G..
+H024 ......GG..
+H017 C.CCGC....
+H009 C.CCG.G.G.
+H007 C..CGCGGG.
+H033 ...CGC...G
+H008 ......GGG.
+H029 ....GC....
+H003 C..C.C....
+H035 C..CGCGGGG
+H013 .........G
+H032 ...C...GG.
+H025 ....GCGGG.
+H021 ..CC..G.G.
+H030 C...GCGG..
+H031 ......G.G.
+H012 C.CCG.GGG.
+H005 ......GGGG
+H011 C..CGC....
+H022 .....C...G
+H014 ..CCGC....
+H018 C...GC....
+OUTG C...GCGGG.
+
+
+
+
+Frequencies..
+ T C A G
+H019 0.0000 0.6000 0.0000 0.4000
+H026 0.0000 0.5000 0.0000 0.5000
+H004 0.0000 0.4000 0.0000 0.6000
+H020 0.0000 0.5000 0.0000 0.5000
+H034 0.0000 0.5000 0.0000 0.5000
+H027 0.0000 0.7000 0.0000 0.3000
+H023 0.0000 0.6000 0.0000 0.4000
+H016 0.0000 0.4000 0.0000 0.6000
+H002 0.0000 0.6000 0.0000 0.4000
+H015 0.0000 0.5000 0.0000 0.5000
+H006 0.0000 0.3000 0.0000 0.7000
+H001 0.0000 0.6000 0.0000 0.4000
+H010 0.0000 0.7000 0.0000 0.3000
+H028 0.0000 0.5000 0.0000 0.5000
+H024 0.0000 0.4000 0.0000 0.6000
+H017 0.0000 0.9000 0.0000 0.1000
+H009 0.0000 0.6000 0.0000 0.4000
+H007 0.0000 0.5000 0.0000 0.5000
+H033 0.0000 0.6000 0.0000 0.4000
+H008 0.0000 0.3000 0.0000 0.7000
+H029 0.0000 0.6000 0.0000 0.4000
+H003 0.0000 0.9000 0.0000 0.1000
+H035 0.0000 0.4000 0.0000 0.6000
+H013 0.0000 0.5000 0.0000 0.5000
+H032 0.0000 0.5000 0.0000 0.5000
+H025 0.0000 0.3000 0.0000 0.7000
+H021 0.0000 0.6000 0.0000 0.4000
+H030 0.0000 0.5000 0.0000 0.5000
+H031 0.0000 0.4000 0.0000 0.6000
+H012 0.0000 0.5000 0.0000 0.5000
+H005 0.0000 0.2000 0.0000 0.8000
+H011 0.0000 0.8000 0.0000 0.2000
+H022 0.0000 0.6000 0.0000 0.4000
+H014 0.0000 0.8000 0.0000 0.2000
+H018 0.0000 0.7000 0.0000 0.3000
+OUTG 0.0000 0.4000 0.0000 0.6000
+
+Average 0.0000 0.5389 0.0000 0.4611
+
+# constant sites: 0 (0.00%)
+ln Lmax (unconstrained) = -23.025851
+
+Distances: TN93 (kappa) (alpha set at 0.00)
+This matrix is not used in later m.l. analysis.
+
+H019
+H026 9.0000( 0.0000)
+H004 nan(999.0000) nan(999.0000)
+H020 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000)
+H034 nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000)
+H027 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000)
+H023 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000)
+H016 nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000)
+H002 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000)
+H015 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000)
+H006 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000)
+H001 nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000)
+H010 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000)
+H028 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000)
+H024 nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000)
+H017 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000)
+H009 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000)
+H007 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000)
+H033 nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000)
+H008 nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000)
+H029 nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000)
+H003 nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000)
+H035 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000)
+H013 nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000)
+H032 nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000)
+H025 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000)
+H021 nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000)
+H030 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000)
+H031 nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000)
+H012 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000)
+H005 nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000)
+H011 nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000)
+H022 nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000)
+H014 nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000)
+H018 nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000)
+OUTG 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000)
+
+TREE # 1: (((((((((((((((((13, 19), (6, (16, 34))), 32), 22), 35), (((33, (24, 1)), 5), 21)), 4), 12), 10), 14), 28), ((11, ((((((29, 31), (25, 8)), 20), 15), 3), 26)), 36)), 23), 18), (2, 7)), 30), (27, 9), 17); MP score: 38.00
+lnL(ntime: 34 np: 39): -161.595863 +0.000000
+ 37..38 38..39 39..40 40..41 41..42 42..43 43..44 44..45 45..46 46..47 47..48 48..49 49..50 50..51 51..52 52..53 53..13 53..19 52..54 54..6 54..55 55..16 55..34 51..32 50..22 49..35 48..56 56..57 57..58 58..33 58..59 59..24 59..1 57..5 56..21 47..4 46..12 45..10 44..14 43..28 42..60 60..61 61..11 61..62 62..63 63..64 64..65 65..66 66..67 67..29 67..31 66..68 68..25 68..8 65..20 64..15 63..3 62..26 60..36 41..23 40..18 39..69 69..2 69..7 38..30 37..70 70..27 70..9 37..17
+ 0.32909 0.32909 0.27647 0.23931 0.23931 0.21195 0.19110 0.14247 0.12649 0.12649 0.12649 0.11202 0.11202 0.08672 0.08672 0.08672 0.03516 0.05787 0.05787 0.07949 0.05674 0.03539 0.01646 0.21191 0.21191 0.14045 0.09884 0.06899 0.06899 0.06899 0.06899 0.02948 0.07806 0.13263 1.00000 0.21839 0.24112 0.21870 0.24735
+
+tree length = 4.99889
+
+(((((((((((((((((H010, H033), (H027, (H017, H014))), H011), H003), H018), (((H022, (H013, H019)), H034), H029)), H020), H001), H015), H028), H030), ((H006, ((((((H031, H005), (H032, H016)), H008), H024), H004), H025)), OUTG)), H035), H007), (H026, H023)), H012), (H021, H002), H009);
+
+(((((((((((((((((H010: 0.035163, H033: 0.035163): 0.051559, (H027: 0.057874, (H017: 0.057874, H014: 0.057874): 0.000000): 0.028848): 0.000000, H011: 0.086722): 0.000000, H003: 0.086722): 0.025300, H018: 0.112022): 0.000000, (((H022: 0.035387, (H013: 0.016460, H019: 0.016460): 0.018928): 0.021351, H034: 0.056739): 0.022749, H029: 0.079488): 0.032534): 0.014469, H020: 0.126491): 0.000000, H001: 0.126491): 0.000000, H015: 0.126491): 0.015976, H028: 0.142467): 0.048638, H030: 0.191105): 0.020845, ((H006: 0.211909, ((((((H031: 0.068986, H005: 0.068986): 0.000000, (H032: 0.029484, H016: 0.029484): 0.039502): 0.000000, H008: 0.068986): 0.000000, H024: 0.068986): 0.029849, H004: 0.098835): 0.041617, H025: 0.140453): 0.071456): 0.000000, OUTG: 0.211909): 0.000041): 0.027363, H035: 0.239313): 0.000000, H007: 0.239313): 0.037161, (H026: 0.078062, H023: 0.078062): 0.198413): 0.052620, H012: 0.329094): 0.000000, (H021: 0.132628, H002: 0.132628): 0.196467, H009: 0.329095);
+
+Detailed output identifying parameters
+
+Parameters in the rate matrix (REV) (Yang 1994 J Mol Evol 39:105-111):
+
+Rate parameters: 1.00000 0.21839 0.24112 0.21870 0.24735
+Base frequencies: 0.00000 0.53889 0.00000 0.46111
+Rate matrix Q, Average Ts/Tv = 0.0000
+ -5.288293 4.383835 0.000000 0.904458
+ 0.000000 -0.927835 0.000000 0.927835
+ 0.000000 0.958761 -4.709878 3.751117
+ 0.000000 1.084337 0.000000 -1.084337
+
+check convergence..
diff --git a/trunk/test/paml/unrooted_absent/association/nb_cas_control.txt b/trunk/test/paml/unrooted_absent/association/nb_cas_control.txt
new file mode 100644
index 0000000000000000000000000000000000000000..0fcc5d715cf67c32674f580140c8b7edb315f08b
--- /dev/null
+++ b/trunk/test/paml/unrooted_absent/association/nb_cas_control.txt
@@ -0,0 +1,35 @@
+H019 m003 c003
+H026 m001 c000
+H004 m011 c002
+H020 m005 c009
+H034 m001 c000
+H027 m001 c002
+H023 m001 c005
+H016 m002 c002
+H002 m009 c003
+H015 m002 c006
+H006 m023 c019
+H001 m024 c039
+H010 m001 c003
+H028 m004 c000
+H024 m001 c000
+H017 m000 c008
+H009 m005 c010
+H007 m025 c036
+H033 m000 c001
+H008 m028 c019
+H029 m001 c003
+H003 m002 c000
+H035 m001 c000
+H013 m015 c005
+H032 m000 c001
+H025 m002 c003
+H021 m011 c002
+H030 m001 c001
+H031 m001 c000
+H012 m001 c002
+H005 m002 c002
+H011 m003 c008
+H022 m009 c001
+H014 m002 c003
+H018 m002 c002
diff --git a/trunk/test/paml/unrooted_absent/association/rst b/trunk/test/paml/unrooted_absent/association/rst
new file mode 100644
index 0000000000000000000000000000000000000000..b01eb89167598019c30bbde099cd899a9b9994bc
--- /dev/null
+++ b/trunk/test/paml/unrooted_absent/association/rst
@@ -0,0 +1,454 @@
+Supplemental results for BASEML
+
+seqf: trio2.phy
+treef: trio2.phy_phyml_tree.txt
+
+
+TREE # 1
+
+Ancestral reconstruction by BASEML.
+
+(((((((((((((((((H010: 0.035163, H033: 0.035163): 0.051559, (H027: 0.057874, (H017: 0.057874, H014: 0.057874): 0.000000): 0.028848): 0.000000, H011: 0.086722): 0.000000, H003: 0.086722): 0.025300, H018: 0.112022): 0.000000, (((H022: 0.035387, (H013: 0.016460, H019: 0.016460): 0.018928): 0.021351, H034: 0.056739): 0.022749, H029: 0.079488): 0.032534): 0.014469, H020: 0.126491): 0.000000, H001: 0.126491): 0.000000, H015: 0.126491): 0.015976, H028: 0.142467): 0.048638, H030: 0.191105): 0.020845, ((H006: 0.211909, ((((((H031: 0.068986, H005: 0.068986): 0.000000, (H032: 0.029484, H016: 0.029484): 0.039502): 0.000000, H008: 0.068986): 0.000000, H024: 0.068986): 0.029849, H004: 0.098835): 0.041617, H025: 0.140453): 0.071456): 0.000000, OUTG: 0.211909): 0.000041): 0.027363, H035: 0.239313): 0.000000, H007: 0.239313): 0.037161, (H026: 0.078062, H023: 0.078062): 0.198413): 0.052620, H012: 0.329094): 0.000000, (H021: 0.132628, H002: 0.132628): 0.196467, H009: 0.329095);
+
+(((((((((((((((((13, 19), (6, (16, 34))), 32), 22), 35), (((33, (24, 1)), 5), 21)), 4), 12), 10), 14), 28), ((11, ((((((29, 31), (25, 8)), 20), 15), 3), 26)), 36)), 23), 18), (2, 7)), 30), (27, 9), 17);
+
+ 37..38 38..39 39..40 40..41 41..42 42..43 43..44 44..45 45..46 46..47 47..48 48..49 49..50 50..51 51..52 52..53 53..13 53..19 52..54 54..6 54..55 55..16 55..34 51..32 50..22 49..35 48..56 56..57 57..58 58..33 58..59 59..24 59..1 57..5 56..21 47..4 46..12 45..10 44..14 43..28 42..60 60..61 61..11 61..62 62..63 63..64 64..65 65..66 66..67 67..29 67..31 66..68 68..25 68..8 65..20 64..15 63..3 62..26 60..36 41..23 40..18 39..69 69..2 69..7 38..30 37..70 70..27 70..9 37..17
+
+tree with node labels for Rod Page's TreeView
+(((((((((((((((((13_H010: 0.035163, 19_H033: 0.035163) 53 : 0.051559, (6_H027: 0.057874, (16_H017: 0.057874, 34_H014: 0.057874) 55 : 0.000000) 54 : 0.028848) 52 : 0.000000, 32_H011: 0.086722) 51 : 0.000000, 22_H003: 0.086722) 50 : 0.025300, 35_H018: 0.112022) 49 : 0.000000, (((33_H022: 0.035387, (24_H013: 0.016460, 1_H019: 0.016460) 59 : 0.018928) 58 : 0.021351, 5_H034: 0.056739) 57 : 0.022749, 21_H029: 0.079488) 56 : 0.032534) 48 : 0.014469, 4_H020: 0.126491) 47 : 0.000000, 12_H001: 0.126491) 46 : 0.000000, 10_H015: 0.126491) 45 : 0.015976, 14_H028: 0.142467) 44 : 0.048638, 28_H030: 0.191105) 43 : 0.020845, ((11_H006: 0.211909, ((((((29_H031: 0.068986, 31_H005: 0.068986) 67 : 0.000000, (25_H032: 0.029484, 8_H016: 0.029484) 68 : 0.039502) 66 : 0.000000, 20_H008: 0.068986) 65 : 0.000000, 15_H024: 0.068986) 64 : 0.029849, 3_H004: 0.098835) 63 : 0.041617, 26_H025: 0.140453) 62 : 0.071456) 61 : 0.000000, 36_OUTG: 0.211909) 60 : 0.000041) 42 : 0.027363, 23_H035: 0.239313) 41 : 0.000000, 18_H007: 0.239313) 40 : 0.037161, (2_H026: 0.078062, 7_H023: 0.078062) 69 : 0.198413) 39 : 0.052620, 30_H012: 0.329094) 38 : 0.000000, (27_H021: 0.132628, 9_H002: 0.132628) 70 : 0.196467, 17_H009: 0.329095) 37 ;
+
+Nodes 37 to 70 are ancestral
+
+(1) Marginal reconstruction of ancestral sequences (eqn. 4 in Yang et al. 1995 Genetics 141:1641-1650).
+
+
+Prob of best character at each node, listed by site
+
+Site Freq Data:
+
+ 1 1 GGGCGCCGCCCCCCGCCCGGGCCGGGGCGCGCGGCC: C(0.989) C(0.989) C(0.993) C(0.999) C(0.999) C(0.999) C(0.999) C(1.000) C(1.000) C(1.000) C(1.000) C(0.999) C(0.999) C(1.000) C(1.000) C(1.000) C(0.948) C(0.998) C(0.998) G(0.948) G(0.997) G(1.000) G(1.000) C(0.999) C(0.999) G(0.924) G(0.995) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) C(0.824) C(0.824)
+ 2 1 CCCGCCCCCGGGCGCCCCCCCCCCCCCCCCCCCCCC: C(0.998) C(0.998) C(0.999) C(0.999) C(0.999) C(0.992) C(0.932) G(0.758) G(0.787) G(0.787) G(0.787) C(0.994) C(0.994) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(0.992) C(0.992) C(0.999) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(0.999) C(0.996)
+ 3 1 GCGGGCCGCGGGGGGCCGGGGGGGGGCGGCGGGCGG: C(0.908) C(0.908) C(0.703) G(0.975) G(0.975) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) C(0.992) C(0.992) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) C(0.990) C(0.989)
+ 4 1 GCGGGCCCCGGGCGGCCCCGGCCGCGCGGCGCGCGG: C(0.989) C(0.989) C(0.967) C(0.892) C(0.892) G(0.997) G(0.999) G(1.000) G(1.000) G(1.000) G(1.000) G(0.998) G(0.998) C(0.999) C(0.999) C(0.999) C(1.000) C(1.000) C(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(0.997) G(0.997) G(0.999) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) C(0.977) C(0.998) C(0.996)
+ 5 1 CGCGGGGCCGGGGGCGGGGCGCGCCGCGCGCGCGGG: G(0.974) G(0.974) G(0.996) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(0.994) G(0.943) C(0.969) C(1.000) G(1.000) G(1.000) G(0.826) C(0.942) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) G(0.999) C(0.916)
+ 6 1 GCCCCGCGGCCCCCGCGCCGCCCGGCGCGGGCCCCC: G(0.757) G(0.757) C(0.896) C(0.995) C(0.995) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(0.998) C(0.998) C(1.000) C(0.997) C(0.956) G(0.987) C(1.000) C(1.000) C(0.968) C(0.844) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) C(0.996) G(0.978)
+ 7 1 CGGCCCGGGCGCCCGCGGCGCCGCCGGGGGGCCCCG: G(0.999) G(0.999) G(0.999) G(1.000) G(1.000) G(1.000) G(0.932) C(0.956) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(0.964) G(0.999) G(0.997)
+ 8 1 CGGCCCGGGCGCCGGCCGCGCCGCGGCGCGGCCCCG: G(0.949) G(0.949) G(0.993) G(1.000) G(1.000) G(1.000) G(0.978) G(0.696) C(0.998) C(0.998) C(0.998) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(0.999) G(0.809)
+ 9 1 CGGCCCGGGGGCCCCCGGCGCCGCGGGCGGGCCCCG: G(0.999) G(0.999) G(0.999) G(1.000) G(1.000) G(0.997) C(0.670) C(0.982) C(0.998) C(0.998) C(0.998) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) G(0.997) G(0.997) G(0.999) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(0.999) G(0.997)
+ 10 1 CCCGGGCCCCCCGCCCCCGCCCGGCCCCCCGCGCCC: C(0.998) C(0.998) C(0.999) C(0.998) C(0.998) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(0.999) C(0.999) C(0.999) G(0.978) C(0.998) C(0.998) C(0.902) G(0.903) G(0.942) G(0.927) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(0.999) C(0.996)
+
+Summary of changes along branches.
+Check root for directions of change.
+
+Branch 1: 37..38
+
+
+
+Branch 2: 38..39
+
+ 6 G 0.757 -> C 0.896
+
+
+Branch 3: 39..40
+
+ 3 C 0.703 -> G 0.975
+
+
+Branch 4: 40..41
+
+
+
+Branch 5: 41..42
+
+ 4 C 0.892 -> G 0.997
+
+
+Branch 6: 42..43
+
+ 9 G 0.997 -> C 0.670
+
+
+Branch 7: 43..44
+
+ 2 C 0.932 -> G 0.758
+ 7 G 0.932 -> C 0.956
+
+
+Branch 8: 44..45
+
+ 8 G 0.696 -> C 0.998
+
+
+Branch 9: 45..46
+
+
+
+Branch 10: 46..47
+
+
+
+Branch 11: 47..48
+
+ 2 G 0.787 -> C 0.994
+
+
+Branch 12: 48..49
+
+
+
+Branch 13: 49..50
+
+ 4 G 0.998 -> C 0.999
+
+
+Branch 14: 50..51
+
+
+
+Branch 15: 51..52
+
+
+
+Branch 16: 52..53
+
+ 10 C 0.999 -> G 0.978
+
+
+Branch 17: 53..13 (H010)
+
+
+
+Branch 18: 53..19 (H033)
+
+ 1 C 0.948 -> G
+
+
+Branch 19: 52..54
+
+ 3 G 1.000 -> C 0.992
+
+
+Branch 20: 54..6 (H027)
+
+ 6 C 0.998 -> G
+ 10 C 0.998 -> G
+
+
+Branch 21: 54..55
+
+
+
+Branch 22: 55..16 (H017)
+
+
+
+Branch 23: 55..34 (H014)
+
+ 1 C 0.998 -> G
+
+
+Branch 24: 51..32 (H011)
+
+
+
+Branch 25: 50..22 (H003)
+
+ 5 G 1.000 -> C
+
+
+Branch 26: 49..35 (H018)
+
+
+
+Branch 27: 48..56
+
+ 1 C 0.999 -> G 0.948
+
+
+Branch 28: 56..57
+
+ 10 C 0.902 -> G 0.903
+
+
+Branch 29: 57..58
+
+ 5 G 0.943 -> C 0.969
+
+
+Branch 30: 58..33 (H022)
+
+
+
+Branch 31: 58..59
+
+ 6 C 0.956 -> G 0.987
+
+
+Branch 32: 59..24 (H013)
+
+
+
+Branch 33: 59..1 (H019)
+
+ 10 G 0.927 -> C
+
+
+Branch 34: 57..5 (H034)
+
+
+
+Branch 35: 56..21 (H029)
+
+
+
+Branch 36: 47..4 (H020)
+
+ 10 C 1.000 -> G
+
+
+Branch 37: 46..12 (H001)
+
+
+
+Branch 38: 45..10 (H015)
+
+ 9 C 0.998 -> G
+
+
+Branch 39: 44..14 (H028)
+
+
+
+Branch 40: 43..28 (H030)
+
+
+
+Branch 41: 42..60
+
+
+
+Branch 42: 60..61
+
+
+
+Branch 43: 61..11 (H006)
+
+ 2 C 0.992 -> G
+
+
+Branch 44: 61..62
+
+ 1 C 0.999 -> G 0.924
+
+
+Branch 45: 62..63
+
+ 5 G 0.826 -> C 0.942
+
+
+Branch 46: 63..64
+
+ 6 C 0.844 -> G 1.000
+
+
+Branch 47: 64..65
+
+
+
+Branch 48: 65..66
+
+
+
+Branch 49: 66..67
+
+
+
+Branch 50: 67..29 (H031)
+
+ 8 G 1.000 -> C
+
+
+Branch 51: 67..31 (H005)
+
+ 10 C 1.000 -> G
+
+
+Branch 52: 66..68
+
+ 4 G 1.000 -> C 0.977
+
+
+Branch 53: 68..25 (H032)
+
+ 7 G 0.964 -> C
+
+
+Branch 54: 68..8 (H016)
+
+
+
+Branch 55: 65..20 (H008)
+
+
+
+Branch 56: 64..15 (H024)
+
+ 9 G 1.000 -> C
+
+
+Branch 57: 63..3 (H004)
+
+
+
+Branch 58: 62..26 (H025)
+
+
+
+Branch 59: 60..36 (OUTG)
+
+
+
+Branch 60: 41..23 (H035)
+
+ 10 C 0.998 -> G
+
+
+Branch 61: 40..18 (H007)
+
+
+
+Branch 62: 39..69
+
+
+
+Branch 63: 69..2 (H026)
+
+ 1 C 0.824 -> G
+
+
+Branch 64: 69..7 (H023)
+
+
+
+Branch 65: 38..30 (H012)
+
+
+
+Branch 66: 37..70
+
+ 5 G 0.974 -> C 0.916
+
+
+Branch 67: 70..27 (H021)
+
+ 1 C 0.824 -> G
+ 8 G 0.809 -> C
+
+
+Branch 68: 70..9 (H002)
+
+
+
+Branch 69: 37..17 (H009)
+
+ 8 G 0.949 -> C
+
+
+
+
+List of extant and reconstructed sequences
+
+H019 GCGGCGCCCC
+H026 GCCCGCGGGC
+H004 GCGGCCGGGC
+H020 CGGGGCCCCG
+H034 GCGGGCCCCG
+H027 CCCCGGCCCG
+H023 CCCCGCGGGC
+H016 GCGCCGGGGC
+H002 CCCCCGGGGC
+H015 CGGGGCCCGC
+H006 CGGGGCGGGC
+H001 CGGGGCCCCC
+H010 CCGCGCCCCG
+H028 CGGGGCCGCC
+H024 GCGGCGGGCC
+H017 CCCCGCCCCC
+H009 CCCCGGGCGC
+H007 CCGCGCGGGC
+H033 GCGCGCCCCG
+H008 GCGGCGGGGC
+H029 GCGGGCCCCC
+H003 CCGCCCCCCC
+H035 CCGCGCGGGG
+H013 GCGGCGCCCG
+H032 GCGCCGCGGC
+H025 GCGGGCGGGC
+H021 GCCCCGGCGC
+H030 CCGGGCGGCC
+H031 GCGGCGGCGC
+H012 CCCCGGGGGC
+H005 GCGGCGGGGG
+H011 CCGCGCCCCC
+H022 GCGGCCCCCG
+H014 GCCCGCCCCC
+H018 CCGGGCCCCC
+OUTG CCGGGCGGGC
+node #37 CCCCGGGGGC
+node #38 CCCCGGGGGC
+node #39 CCCCGCGGGC
+node #40 CCGCGCGGGC
+node #41 CCGCGCGGGC
+node #42 CCGGGCGGGC
+node #43 CCGGGCGGCC
+node #44 CGGGGCCGCC
+node #45 CGGGGCCCCC
+node #46 CGGGGCCCCC
+node #47 CGGGGCCCCC
+node #48 CCGGGCCCCC
+node #49 CCGGGCCCCC
+node #50 CCGCGCCCCC
+node #51 CCGCGCCCCC
+node #52 CCGCGCCCCC
+node #53 CCGCGCCCCG
+node #54 CCCCGCCCCC
+node #55 CCCCGCCCCC
+node #56 GCGGGCCCCC
+node #57 GCGGGCCCCG
+node #58 GCGGCCCCCG
+node #59 GCGGCGCCCG
+node #60 CCGGGCGGGC
+node #61 CCGGGCGGGC
+node #62 GCGGGCGGGC
+node #63 GCGGCCGGGC
+node #64 GCGGCGGGGC
+node #65 GCGGCGGGGC
+node #66 GCGGCGGGGC
+node #67 GCGGCGGGGC
+node #68 GCGCCGGGGC
+node #69 CCCCGCGGGC
+node #70 CCCCCGGGGC
+
+
+Overall accuracy of the 34 ancestral sequences:
+ 0.95602 0.95602 0.95455 0.98584 0.98584 0.99846 0.95098 0.93915 0.97828 0.97828 0.97828 0.99902 0.99902 0.99985 0.99985 0.99985 0.99250 0.99861 0.99861 0.98433 0.98398 0.98669 0.99137 0.99846 0.99846 0.97139 0.97803 0.99999 0.99999 0.99999 0.99999 0.99410 0.97995 0.94975
+for a site.
+
+ 0.61783 0.61783 0.59678 0.86222 0.86222 0.98464 0.56794 0.49507 0.78363 0.78363 0.78363 0.99023 0.99023 0.99850 0.99850 0.99850 0.92619 0.98612 0.98612 0.84934 0.84626 0.87260 0.91468 0.98469 0.98469 0.73579 0.79053 0.99994 0.99994 0.99994 0.99994 0.94183 0.80398 0.57972
+for the sequence.
+
+
+Counts of changes at sites
+
+ 1 CG CG CG CG CG CG (6)
+ 2 CG CG GC (3)
+ 3 CG GC (2)
+ 4 CG GC GC (3)
+ 5 GC GC GC GC (4)
+ 6 CG GC CG CG (4)
+ 7 GC GC (2)
+ 8 GC GC GC GC (4)
+ 9 CG GC GC (3)
+ 10 GC CG CG CG CG CG CG (7)
+
+
diff --git a/trunk/test/paml/unrooted_absent/association/rst1 b/trunk/test/paml/unrooted_absent/association/rst1
new file mode 100644
index 0000000000000000000000000000000000000000..8b137891791fe96927ad78e64b0aad7bded08bdc
--- /dev/null
+++ b/trunk/test/paml/unrooted_absent/association/rst1
@@ -0,0 +1 @@
+
diff --git a/trunk/test/paml/unrooted_absent/association/rub b/trunk/test/paml/unrooted_absent/association/rub
new file mode 100644
index 0000000000000000000000000000000000000000..aa2293e450e68f403ce2bc1b4dd7652d9187b939
--- /dev/null
+++ b/trunk/test/paml/unrooted_absent/association/rub
@@ -0,0 +1,41 @@
+
+
+TREE # 1
+
+ 1 114.2217 182.744808 x: 0.81953 0.86726 1.00000 0.98855 0.88247 0.84891 0.70415 0.75247 0.74771 0.88939 0.84284 0.64718 0.57978 0.85414 0.86111 0.86635 0.77397 0.50917 0.42804 0.81501 0.71042 0.53319 0.76728 0.73392 0.74699 0.78910 0.82591 0.87496 0.51062 0.47103 0.87787 0.76916 0.53210 0.68156 1.00000 0.21839 0.24112 0.21870 0.24735
+ 2 33.3781 173.193043 x: 0.66645 0.76411 0.92536 0.95393 0.88891 0.86784 0.78325 0.81607 0.84675 1.00000 0.98183 0.79325 0.70171 0.87017 0.92921 0.91115 0.75191 0.55298 0.44804 0.79695 0.71136 0.54174 0.73542 0.70215 0.74897 0.76242 0.79645 0.85402 0.56155 0.55457 0.89908 0.73472 0.49428 0.66111 1.00000 0.21839 0.24112 0.21870 0.24735
+ 3 31.4100 171.781061 x: 0.62417 0.74965 0.91675 0.95149 0.90625 0.88001 0.78246 0.80286 0.84118 1.00000 1.00000 0.80201 0.71661 0.86325 0.94088 0.92065 0.74370 0.56121 0.45343 0.78782 0.70888 0.54213 0.72767 0.71813 0.77166 0.76839 0.79675 0.84956 0.58196 0.57880 0.90681 0.72558 0.48462 0.65359 1.00000 0.21839 0.24112 0.21870 0.24735
+ 4 17.6196 168.911436 x: 0.51067 0.81574 0.94821 0.90043 0.96369 0.82082 0.79862 0.80055 0.86659 1.00000 1.00000 0.79029 0.78033 0.84485 1.00000 0.97225 0.69896 0.58526 0.48375 0.78013 0.71246 0.55541 0.69888 0.75767 0.82635 0.74263 0.76582 0.82443 0.63155 0.64228 0.93986 0.69836 0.46232 0.61078 1.00000 0.21839 0.24112 0.21870 0.24735
+ 5 23.3706 167.934844 x: 0.46216 0.86110 0.93986 0.86826 0.98931 0.82164 0.80459 0.79420 0.85851 1.00000 1.00000 0.80621 0.80257 0.83859 1.00000 1.00000 0.67621 0.58703 0.50051 0.78624 0.71715 0.56273 0.69048 0.76097 0.83554 0.73319 0.76798 0.83004 0.64283 0.65618 0.95449 0.69272 0.45892 0.58833 1.00000 0.21839 0.24112 0.21870 0.24735
+ 6 14.7695 167.479522 x: 0.45580 0.88314 0.91969 0.86302 1.00000 0.82049 0.79826 0.79378 0.86299 1.00000 1.00000 0.81195 0.82104 0.83901 1.00000 1.00000 0.66109 0.59098 0.51385 0.78202 0.71682 0.56516 0.68461 0.76386 0.84417 0.73400 0.77019 0.83008 0.65352 0.67100 0.96526 0.68736 0.45689 0.57584 1.00000 0.21839 0.24112 0.21870 0.24735
+ 7 14.1126 166.380253 x: 0.40133 0.94902 0.85973 0.90176 1.00000 0.83703 0.81750 0.80356 0.85734 1.00000 1.00000 0.79473 0.86120 0.81071 1.00000 1.00000 0.62946 0.59618 0.55199 0.77017 0.71392 0.56886 0.66911 0.75636 0.85741 0.71901 0.74939 0.80044 0.67320 0.70913 1.00000 0.67154 0.44986 0.54148 1.00000 0.21839 0.24112 0.21870 0.24735
+ 8 7.1096 165.537735 x: 0.38824 1.00000 0.86939 0.92548 1.00000 0.85363 0.86585 0.77743 0.82165 1.00000 1.00000 0.81829 0.89663 0.78984 1.00000 1.00000 0.63241 0.60314 0.57203 0.77829 0.71670 0.57218 0.65330 0.76451 0.88938 0.70924 0.72837 0.77878 0.70522 0.75641 1.00000 0.65269 0.43569 0.52637 1.00000 0.21839 0.24112 0.21870 0.24735
+ 10 12.4933 164.710179 x: 0.31937 0.98963 0.83943 0.89445 1.00000 0.86785 0.86792 0.76947 0.83855 1.00000 1.00000 0.84780 0.93097 0.79148 1.00000 1.00000 0.61737 0.61686 0.58255 0.76430 0.71371 0.57418 0.64013 0.78513 0.92240 0.71892 0.73462 0.77881 0.73837 0.79583 1.00000 0.63825 0.42101 0.51363 1.00000 0.21839 0.24112 0.21870 0.24735
+ 11 28.6001 163.690231 x: 0.30849 1.00000 0.83132 0.88174 1.00000 0.90084 0.88079 0.76986 0.86593 1.00000 1.00000 0.88416 0.97608 0.79541 1.00000 1.00000 0.59945 0.63370 0.59583 0.74977 0.71119 0.57745 0.62429 0.81623 0.96647 0.73286 0.74365 0.77931 0.77958 0.84416 1.00000 0.62096 0.40596 0.50029 1.00000 0.21839 0.24112 0.21870 0.24735
+ 12 12.9759 163.302483 x: 0.31418 1.00000 0.82947 0.87634 1.00000 0.88488 0.87829 0.76253 0.86595 1.00000 1.00000 0.87994 1.00000 0.79028 1.00000 1.00000 0.58781 0.64116 0.60387 0.74294 0.71012 0.57951 0.61465 0.83005 0.98911 0.73099 0.74097 0.77380 0.80210 0.87281 1.00000 0.61011 0.39879 0.49410 1.00000 0.21839 0.24112 0.21870 0.24735
+ 13 9.4290 163.143128 x: 0.31029 1.00000 0.83219 0.88192 1.00000 0.88725 0.88253 0.76355 0.86452 1.00000 1.00000 0.87055 1.00000 0.78603 1.00000 1.00000 0.57974 0.64396 0.61006 0.74278 0.71084 0.58172 0.60836 0.83315 1.00000 0.72008 0.73234 0.76553 0.81491 0.89160 1.00000 0.60251 0.39389 0.49006 1.00000 0.21839 0.24112 0.21870 0.24735
+ 14 5.0572 162.590098 x: 0.33894 1.00000 0.82330 0.86997 1.00000 0.88838 0.88500 0.76507 0.85807 1.00000 1.00000 0.91539 1.00000 0.79293 1.00000 1.00000 0.53685 0.64435 0.65398 0.76372 0.72056 0.59689 0.57700 0.81436 1.00000 0.64263 0.68553 0.72524 0.88194 1.00000 1.00000 0.56131 0.36840 0.47302 1.00000 0.21839 0.24112 0.21870 0.24735
+ 15 2.9629 162.091317 x: 0.35890 1.00000 0.83330 0.87032 1.00000 0.91205 0.86078 0.75544 0.87189 1.00000 1.00000 0.89374 1.00000 0.79559 1.00000 1.00000 0.48309 0.64473 0.71567 0.75604 0.71892 0.60844 0.53786 0.84271 1.00000 0.65973 0.71959 0.73694 1.00000 1.00000 1.00000 0.51387 0.32888 0.44585 1.00000 0.21839 0.24112 0.21870 0.24735
+ 16 3.3956 161.872408 x: 0.34492 1.00000 0.84438 0.86389 1.00000 0.88023 0.89673 0.76456 0.91656 1.00000 1.00000 0.90863 1.00000 0.78793 1.00000 1.00000 0.42667 0.66187 0.78707 0.72343 0.71061 0.61791 0.49406 0.88799 1.00000 0.67913 0.73792 0.72304 1.00000 1.00000 1.00000 0.46053 0.28243 0.41056 1.00000 0.21839 0.24112 0.21870 0.24735
+ 17 3.9966 161.770070 x: 0.33851 1.00000 0.84337 0.85142 1.00000 0.89056 0.90211 0.74173 0.89353 1.00000 1.00000 0.92408 1.00000 0.78074 1.00000 1.00000 0.39483 0.67357 0.83450 0.70239 0.70601 0.62276 0.46838 0.92831 1.00000 0.68671 0.73893 0.70807 1.00000 1.00000 1.00000 0.42953 0.25884 0.39136 1.00000 0.21839 0.24112 0.21870 0.24735
+ 18 1.4952 161.734635 x: 0.34298 1.00000 0.82774 0.82765 1.00000 0.89872 0.90300 0.74562 0.89743 1.00000 1.00000 0.90847 1.00000 0.79032 1.00000 1.00000 0.39186 0.67804 0.86551 0.69967 0.70777 0.62375 0.46295 0.95674 1.00000 0.68308 0.72774 0.69970 1.00000 1.00000 1.00000 0.42233 0.26025 0.38958 1.00000 0.21839 0.24112 0.21870 0.24735
+ 19 1.4157 161.681430 x: 0.33721 1.00000 0.82956 0.83303 1.00000 0.89316 0.89742 0.74898 0.89724 1.00000 1.00000 0.90821 1.00000 0.79611 1.00000 1.00000 0.40046 0.67870 0.90635 0.70533 0.71307 0.62354 0.46450 1.00000 1.00000 0.67837 0.71305 0.69722 1.00000 1.00000 1.00000 0.42370 0.27168 0.39300 1.00000 0.21839 0.24112 0.21870 0.24735
+ 20 0.9514 161.624429 x: 0.33617 1.00000 0.83343 0.84359 1.00000 0.88771 0.90171 0.74736 0.88990 1.00000 1.00000 0.90042 1.00000 0.78287 1.00000 1.00000 0.40786 0.68270 1.00000 0.70168 0.71701 0.62281 0.46094 0.99348 1.00000 0.68210 0.70009 0.70005 1.00000 1.00000 1.00000 0.42018 0.28610 0.39681 1.00000 0.21839 0.24112 0.21870 0.24735
+ 21 0.4760 161.610936 x: 0.33629 1.00000 0.83037 0.85154 1.00000 0.88612 0.90251 0.74028 0.89306 1.00000 1.00000 0.89494 1.00000 0.76679 1.00000 1.00000 0.40415 0.65880 1.00000 0.70513 0.71324 0.62360 0.46084 0.99624 1.00000 0.66902 0.70329 0.70164 1.00000 1.00000 1.00000 0.42099 0.27893 0.40072 1.00000 0.21839 0.24112 0.21870 0.24735
+ 22 0.3483 161.605079 x: 0.33473 1.00000 0.83306 0.85747 1.00000 0.88272 0.90598 0.74121 0.88622 1.00000 1.00000 0.89070 1.00000 0.77790 1.00000 1.00000 0.40066 0.65497 1.00000 0.70599 0.70914 0.62374 0.46231 0.99700 1.00000 0.66154 0.70980 0.70015 1.00000 1.00000 1.00000 0.42349 0.27113 0.40129 1.00000 0.21839 0.24112 0.21870 0.24735
+ 23 0.2164 161.601734 x: 0.33263 1.00000 0.83778 0.86020 1.00000 0.88295 0.89778 0.74256 0.88806 1.00000 1.00000 0.88911 1.00000 0.77716 1.00000 1.00000 0.39894 0.66367 1.00000 0.70784 0.70826 0.62390 0.46498 0.99713 1.00000 0.65668 0.71212 0.69476 1.00000 1.00000 1.00000 0.42687 0.26937 0.40093 1.00000 0.21839 0.24112 0.21870 0.24735
+ 24 0.2547 161.599048 x: 0.33218 1.00000 0.83901 0.86028 1.00000 0.88274 0.90033 0.74474 0.88560 1.00000 1.00000 0.88820 1.00000 0.77240 1.00000 1.00000 0.39995 0.66884 1.00000 0.70958 0.70909 0.62370 0.46754 1.00000 1.00000 0.65626 0.71307 0.69319 1.00000 1.00000 1.00000 0.43006 0.27167 0.40137 1.00000 0.21839 0.24112 0.21870 0.24735
+ 26 0.7126 161.598561 x: 0.33268 1.00000 0.83978 0.86142 1.00000 0.88397 0.90086 0.74530 0.88624 1.00000 1.00000 0.88776 1.00000 0.77267 1.00000 1.00000 0.40013 0.66880 1.00000 0.70966 0.70929 0.62371 0.46749 0.99891 1.00000 0.65655 0.71289 0.69339 1.00000 1.00000 1.00000 0.43000 0.27200 0.40136 1.00000 0.21839 0.24112 0.21870 0.24735
+ 27 0.7472 161.597464 x: 0.33194 1.00000 0.84064 0.86304 1.00000 0.88568 0.90152 0.74600 0.88719 1.00000 1.00000 0.88680 1.00000 0.77307 1.00000 1.00000 0.40049 0.66868 1.00000 0.70978 0.70970 0.62373 0.46737 1.00000 1.00000 0.65704 0.71240 0.69375 1.00000 1.00000 1.00000 0.42986 0.27264 0.40130 1.00000 0.21839 0.24112 0.21870 0.24735
+ 28 0.8253 161.597007 x: 0.32978 1.00000 0.84094 0.86414 1.00000 0.88668 0.90184 0.74631 0.88785 1.00000 1.00000 0.88577 1.00000 0.77340 1.00000 1.00000 0.40089 0.66850 1.00000 0.70985 0.71015 0.62374 0.46722 0.99971 1.00000 0.65746 0.71172 0.69408 1.00000 1.00000 1.00000 0.42967 0.27340 0.40124 1.00000 0.21839 0.24112 0.21870 0.24735
+ 29 0.1950 161.596348 x: 0.32940 1.00000 0.84181 0.86664 1.00000 0.88469 0.90090 0.74495 0.88787 1.00000 1.00000 0.88460 1.00000 0.77453 1.00000 1.00000 0.40294 0.66763 1.00000 0.71009 0.71235 0.62373 0.46640 0.99971 1.00000 0.66005 0.70840 0.69599 1.00000 1.00000 1.00000 0.42875 0.27819 0.40192 1.00000 0.21839 0.24112 0.21870 0.24735
+ 30 0.2058 161.595960 x: 0.32936 1.00000 0.84031 0.86585 1.00000 0.88533 0.90205 0.74500 0.88838 1.00000 1.00000 0.88614 1.00000 0.77509 1.00000 1.00000 0.40486 0.66716 1.00000 0.71024 0.71414 0.62369 0.46563 0.99973 1.00000 0.66197 0.70495 0.69743 1.00000 1.00000 1.00000 0.42784 0.28225 0.40271 1.00000 0.21839 0.24112 0.21870 0.24735
+ 31 0.0738 161.595920 x: 0.32954 1.00000 0.83999 0.86551 1.00000 0.88584 0.90189 0.74501 0.88793 1.00000 1.00000 0.88563 1.00000 0.77457 1.00000 1.00000 0.40515 0.66720 1.00000 0.71003 0.71418 0.62362 0.46547 0.99973 1.00000 0.66245 0.70446 0.69773 1.00000 1.00000 1.00000 0.42769 0.28269 0.40292 1.00000 0.21839 0.24112 0.21870 0.24735
+ 32 0.0276 161.595905 x: 0.32949 1.00000 0.84007 0.86549 1.00000 0.88559 0.90190 0.74555 0.88800 1.00000 1.00000 0.88560 1.00000 0.77403 1.00000 1.00000 0.40538 0.66749 1.00000 0.70973 0.71391 0.62351 0.46530 0.99973 1.00000 0.66280 0.70403 0.69790 1.00000 1.00000 1.00000 0.42755 0.28262 0.40313 1.00000 0.21839 0.24112 0.21870 0.24735
+ 33 0.0218 161.595900 x: 0.32941 1.00000 0.84018 0.86558 1.00000 0.88567 0.90170 0.74561 0.88790 1.00000 1.00000 0.88583 1.00000 0.77397 1.00000 1.00000 0.40549 0.66765 1.00000 0.70961 0.71374 0.62347 0.46522 0.99974 1.00000 0.66298 0.70383 0.69798 1.00000 1.00000 1.00000 0.42748 0.28248 0.40324 1.00000 0.21839 0.24112 0.21870 0.24735
+ 34 0.0087 161.595894 x: 0.32940 1.00000 0.84019 0.86546 1.00000 0.88566 0.90166 0.74566 0.88785 1.00000 1.00000 0.88568 1.00000 0.77440 1.00000 1.00000 0.40564 0.66780 1.00000 0.70966 0.71353 0.62347 0.46510 0.99975 1.00000 0.66314 0.70348 0.69804 1.00000 1.00000 1.00000 0.42736 0.28211 0.40342 1.00000 0.21839 0.24112 0.21870 0.24735
+ 35 0.0045 161.595885 x: 0.32931 1.00000 0.84024 0.86546 1.00000 0.88564 0.90189 0.74525 0.88796 1.00000 1.00000 0.88564 1.00000 0.77416 1.00000 1.00000 0.40572 0.66758 1.00000 0.71013 0.71354 0.62364 0.46501 0.99976 1.00000 0.66336 0.70329 0.69822 1.00000 1.00000 1.00000 0.42725 0.28163 0.40352 1.00000 0.21839 0.24112 0.21870 0.24735
+ 36 0.0030 161.595868 x: 0.32920 1.00000 0.84011 0.86552 1.00000 0.88571 0.90146 0.74538 0.88817 1.00000 1.00000 0.88559 1.00000 0.77408 1.00000 1.00000 0.40554 0.66731 1.00000 0.70975 0.71374 0.62373 0.46508 0.99980 1.00000 0.66283 0.70342 0.69798 1.00000 1.00000 1.00000 0.42732 0.28210 0.40314 1.00000 0.21839 0.24112 0.21870 0.24735
+ 37 0.0092 161.595863 x: 0.32909 1.00000 0.84011 0.86559 1.00000 0.88566 0.90165 0.74549 0.88786 1.00000 1.00000 0.88561 1.00000 0.77415 1.00000 1.00000 0.40546 0.66735 1.00000 0.70958 0.71380 0.62369 0.46513 0.99981 1.00000 0.66280 0.70369 0.69799 1.00000 1.00000 1.00000 0.42739 0.28235 0.40301 1.00000 0.21839 0.24112 0.21870 0.24735
+ 38 0.0039 161.595863 x: 0.32909 1.00000 0.84011 0.86559 1.00000 0.88566 0.90165 0.74549 0.88786 1.00000 1.00000 0.88561 1.00000 0.77415 1.00000 1.00000 0.40546 0.66735 1.00000 0.70958 0.71380 0.62369 0.46513 0.99981 1.00000 0.66280 0.70369 0.69799 1.00000 1.00000 1.00000 0.42739 0.28235 0.40301 1.00000 0.21839 0.24112 0.21870 0.24735
+check convergence!
diff --git a/trunk/test/paml/unrooted_absent/association/run_altree b/trunk/test/paml/unrooted_absent/association/run_altree
new file mode 100755
index 0000000000000000000000000000000000000000..1ee1379451ceb39f0617fe3f3a94125ff175697b
--- /dev/null
+++ b/trunk/test/paml/unrooted_absent/association/run_altree
@@ -0,0 +1,16 @@
+#!/bin/sh -x
+
+# To obtain the apomorphy list corresponding to the tree whose topology
+# has been reconstructed by phyML
+# paml uses the baseml.ctl file as the parameter file
+baseml
+
+
+#To perform the association test
+# The tree is not rooted so we have to specify the name of the
+# outgroup sequence to perform the association analysis which needs a
+# rooted tree.
+# The outgroup sequence is removed before the analysis
+../../../../altree -i rst -j nb_cas_control.txt -a -t SNP \
+ --remove-outgroup --outgroup OUTG -p paml -r 1 -o 1_trio_ML.asso
+
diff --git a/trunk/test/paml/unrooted_absent/association/trio2.phy b/trunk/test/paml/unrooted_absent/association/trio2.phy
new file mode 100644
index 0000000000000000000000000000000000000000..f83ea2101250b0ca41d0886e3fb2f42d4d166d64
--- /dev/null
+++ b/trunk/test/paml/unrooted_absent/association/trio2.phy
@@ -0,0 +1,37 @@
+ 36 10
+H019 GCGGCGCCCC
+H026 GCCCGCGGGC
+H004 GCGGCCGGGC
+H020 CGGGGCCCCG
+H034 GCGGGCCCCG
+H027 CCCCGGCCCG
+H023 CCCCGCGGGC
+H016 GCGCCGGGGC
+H002 CCCCCGGGGC
+H015 CGGGGCCCGC
+H006 CGGGGCGGGC
+H001 CGGGGCCCCC
+H010 CCGCGCCCCG
+H028 CGGGGCCGCC
+H024 GCGGCGGGCC
+H017 CCCCGCCCCC
+H009 CCCCGGGCGC
+H007 CCGCGCGGGC
+H033 GCGCGCCCCG
+H008 GCGGCGGGGC
+H029 GCGGGCCCCC
+H003 CCGCCCCCCC
+H035 CCGCGCGGGG
+H013 GCGGCGCCCG
+H032 GCGCCGCGGC
+H025 GCGGGCGGGC
+H021 GCCCCGGCGC
+H030 CCGGGCGGCC
+H031 GCGGCGGCGC
+H012 CCCCGGGGGC
+H005 GCGGCGGGGG
+H011 CCGCGCCCCC
+H022 GCGGCCCCCG
+H014 GCCCGCCCCC
+H018 CCGGGCCCCC
+OUTG CCGGGCGGGC
diff --git a/trunk/test/paml/unrooted_absent/association/trio2.phy_phyml_tree.txt b/trunk/test/paml/unrooted_absent/association/trio2.phy_phyml_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..7a9e40ebe0c855c5801a1f9f89eaf97c7a331a69
--- /dev/null
+++ b/trunk/test/paml/unrooted_absent/association/trio2.phy_phyml_tree.txt
@@ -0,0 +1 @@
+(((((((((((((((((H010:0.000000,H033:0.114130):0.116459,(H027:0.274557,(H017:0.000004,H014:0.118913):0.000000):0.118933):0.000006,H011:0.000000):0.000000,H003:0.118921):0.116475,H018:0.000000):0.000000,(((H022:0.000000,(H013:0.000001,H019:0.111894):0.111900):0.111898,H034:0.000000):0.111896,H029:0.000000):0.114133):0.114148,H020:0.111888):0.000005,H001:0.000000):0.000002,H015:0.111898):0.111892,H028:0.000001):0.253376,H030:0.000000):0.109756,((H006:0.107699,((((((H031:0.107699,H005:0.105727):0.000000,(H032:0.109754,H016:0.000000):0.107699):0.000000,H008:0.000000):0.000000,H024:0.107699):0.107699,H004:0.000000):0.107700,H025:0.000000):0.107700):0.000000,OUTG:0.000000):0.000001):0.109752,H035:0.109755):0.000000,H007:0.000000):0.111901,(H026:0.111895,H023:0.000001):0.000000):0.111899,H012:0.000000):0.000000,(H021:0.260014,H002:0.000005):0.111874,H009:0.111896);
diff --git a/trunk/test/paml/unrooted_present/association/1_trio_ML.asso b/trunk/test/paml/unrooted_present/association/1_trio_ML.asso
new file mode 100644
index 0000000000000000000000000000000000000000..7bdeb5473a712ce8ab977313cc957d85c99e539f
--- /dev/null
+++ b/trunk/test/paml/unrooted_present/association/1_trio_ML.asso
@@ -0,0 +1,120 @@
+
+ /----* H006 case/control:23/19
+ | Site: 2 Sens: C-->G
+ | /----* H031 case/control:1/0
+ | | Site: 8 Sens: G-->C
+ | |----* H005 case/control:2/2
+ | | Site: 10 Sens: C-->G
+ | | /----* H032 case/control:0/1
+ | | | Site: 7 Sens: G-->C
+ | |----* 68 case/control:2/3
+ | | | Site: 4 Sens: G-->C
+ | | \----* H016 case/control:2/2
+ | /----* 64+(65+(66+(67))) case/control:34/24
+ | | | Site: 6 Sens: C-->G
+ | | |----* H008 case/control:28/19
+ | | \----* H024 case/control:1/0
+ | | Site: 9 Sens: G-->C
+ | /----* 63 case/control:45/26
+ | | | Site: 5 Sens: G-->C
+ | | \----* H004 case/control:11/2
+ |----* 62 case/control:47/29
+ | | Site: 1 Sens: C-->G
+ | \----* H025 case/control:2/3
+ |----* OUTG case/control:4/4
+ | Site: 11 Sens: G-->C
+-----* 60+(61)+(42) case/control:204/204
+ |
+ | [0] ddl=4 chi2=6.69 p_value_chi2=0.158
+ | [1] ddl=8 chi2=11.30 p_value_chi2=0.173
+ | [2] ddl=12 chi2=24.02 p_value_chi2=0.012
+ | [3] ddl=21 chi2=39.11 p_value_chi2=0.002
+ | [4] ddl=25 chi2=54.71 p_value_chi2=0
+ | [5] ddl=29 chi2=63.21 p_value_chi2=0
+ | [6] ddl=33 chi2=65.94 p_value_chi2=0
+ | [7] ddl=34 chi2=67.18 p_value_chi2=0
+ | [8] ddl=35 chi2=68.34 p_value_chi2=0
+ | /----* H010 case/control:1/3
+ | /----* 53 case/control:1/4
+ | | | Site: 10 Sens: C-->G
+ | | \----* H033 case/control:0/1
+ | | Site: 1 Sens: C-->G
+ | | /----* H027 case/control:1/2
+ | | | Site: 6 Sens: C-->G
+ | | | Site: 10 Sens: C-->G
+ | | |----* H017 case/control:0/8
+ | |----* 54+(55) case/control:3/13
+ | | | Site: 3 Sens: G-->C
+ | | \----* H014 case/control:2/3
+ | | Site: 1 Sens: C-->G
+ | /----* 50+(51+(52)) case/control:9/25
+ | | | Site: 4 Sens: G-->C
+ | | |----* H011 case/control:3/8
+ | | \----* H003 case/control:2/0
+ | | Site: 5 Sens: G-->C
+ | |----* H018 case/control:2/2
+ | /----* 48+(49) case/control:40/39
+ | | | Site: 2 Sens: G-->C
+ | | | /----* H022 case/control:9/1
+ | | | /----* 58 case/control:27/9
+ | | | | | Site: 5 Sens: G-->C
+ | | | | | /----* H013 case/control:15/5
+ | | | | \----* 59 case/control:18/8
+ | | | | | Site: 6 Sens: C-->G
+ | | | | \----* H019 case/control:3/3
+ | | | | Site: 10 Sens: G-->C
+ | | | /----* 57 case/control:28/9
+ | | | | | Site: 10 Sens: C-->G
+ | | | | \----* H034 case/control:1/0
+ | | \----* 56 case/control:29/12
+ | | | Site: 1 Sens: C-->G
+ | | \----* H029 case/control:1/3
+ | |----* H020 case/control:5/9
+ | | Site: 10 Sens: C-->G
+ | /----* 45+(46+(47)) case/control:71/93
+ | | | Site: 8 Sens: G-->C
+ | | |----* H001 case/control:24/39
+ | | \----* H015 case/control:2/6
+ | | Site: 9 Sens: C-->G
+ | /----* 44 case/control:75/93
+ | | | Site: 7 Sens: G-->C
+ | | | Site: 2 Sens: C-->G
+ | | \----* H028 case/control:4/0
+ |----* 43 case/control:76/94
+ | | Site: 9 Sens: G-->C
+ | \----* H030 case/control:1/1
+ | /----* H035 case/control:1/0
+ | | Site: 10 Sens: C-->G
+ | |----* H007 case/control:25/36
+ \----* 41+(40) case/control:54/58
+ | Site: 4 Sens: G-->C
+ | /----* H026 case/control:1/0
+ | | Site: 1 Sens: C-->G
+ | |----* H023 case/control:1/5
+ \----* 39+(69) case/control:28/22
+ | Site: 3 Sens: G-->C
+ | /----* H012 case/control:1/2
+ | | /----* H021 case/control:11/2
+ | | | Site: 8 Sens: G-->C
+ | | | Site: 1 Sens: C-->G
+ | |----* 70 case/control:20/5
+ | | | Site: 5 Sens: G-->C
+ | | \----* H002 case/control:9/3
+ \----* 38+(37) case/control:26/17
+ | Site: 6 Sens: C-->G
+ \----* H009 case/control:5/10
+ Site: 8 Sens: G-->C
+
+ Number of permutation: 1
+
+p_val for each level:
+level 1 p-value (non corrected) 0
+level 2 p-value (non corrected) 0
+level 3 p-value (non corrected) 0
+level 4 p-value (non corrected) 0
+level 5 p-value (non corrected) 0
+level 6 p-value (non corrected) 0
+level 7 p-value (non corrected) 0
+level 8 p-value (non corrected) 0
+level 9 p-value (non corrected) 0
+corrected minimal p_value in the tree: 0
diff --git a/trunk/test/paml/unrooted_present/association/2base.t b/trunk/test/paml/unrooted_present/association/2base.t
new file mode 100644
index 0000000000000000000000000000000000000000..440309570493f495d98b528146668ffaef391eb0
--- /dev/null
+++ b/trunk/test/paml/unrooted_present/association/2base.t
@@ -0,0 +1,37 @@
+ 36
+H019
+H026 9.0000
+H004 nan nan
+H020 nan 9.0000 9.0000
+H034 nan 9.0000 nan nan
+H027 nan 9.0000 9.0000 nan nan
+H023 9.0000 nan nan 9.0000 9.0000 nan
+H016 nan nan nan 9.0000 9.0000 9.0000 nan
+H002 9.0000 nan nan 9.0000 9.0000 nan nan nan
+H015 nan 9.0000 nan nan nan 9.0000 nan 9.0000 9.0000
+H006 9.0000 nan nan nan 9.0000 9.0000 nan 9.0000 nan nan
+H001 nan 9.0000 9.0000 nan nan nan 9.0000 9.0000 9.0000 nan nan
+H010 nan 9.0000 9.0000 nan nan nan nan 9.0000 9.0000 nan 9.0000 nan
+H028 nan 9.0000 nan nan nan 9.0000 nan 9.0000 9.0000 nan nan nan nan
+H024 nan nan nan 9.0000 nan 9.0000 9.0000 nan nan 9.0000 9.0000 9.0000 9.0000 nan
+H017 9.0000 nan 9.0000 nan nan nan nan 9.0000 9.0000 nan 9.0000 nan nan nan 9.0000
+H009 9.0000 nan 9.0000 9.0000 9.0000 nan nan nan nan nan nan 9.0000 nan 9.0000 9.0000 nan
+H007 9.0000 nan nan 9.0000 9.0000 9.0000 nan nan nan nan nan nan nan nan nan nan nan
+H033 nan nan 9.0000 nan nan nan 9.0000 9.0000 9.0000 nan 9.0000 nan nan nan 9.0000 nan 9.0000 nan
+H008 nan nan nan 9.0000 9.0000 9.0000 nan nan nan 9.0000 nan 9.0000 9.0000 9.0000 nan 9.0000 nan nan 9.0000
+H029 nan nan nan nan nan nan 9.0000 9.0000 9.0000 nan nan nan nan nan nan nan 9.0000 nan nan nan
+H003 nan 9.0000 nan nan nan nan 9.0000 nan 9.0000 nan 9.0000 nan nan nan nan nan 9.0000 nan nan 9.0000 nan
+H035 9.0000 nan nan nan nan nan nan nan nan nan nan 9.0000 nan nan 9.0000 nan nan nan nan 9.0000 9.0000 nan
+H013 nan 9.0000 nan nan nan nan 9.0000 nan 9.0000 9.0000 9.0000 nan nan 9.0000 nan 9.0000 9.0000 9.0000 nan nan nan nan 9.0000
+H032 nan nan nan 9.0000 9.0000 9.0000 nan nan nan 9.0000 9.0000 9.0000 9.0000 9.0000 nan 9.0000 nan nan nan nan nan nan nan nan
+H025 nan nan nan 9.0000 nan 9.0000 nan nan nan nan nan nan 9.0000 nan nan 9.0000 nan nan nan nan nan 9.0000 nan 9.0000 nan
+H021 nan nan nan 9.0000 9.0000 nan nan nan nan 9.0000 9.0000 9.0000 9.0000 9.0000 nan 9.0000 nan nan 9.0000 nan 9.0000 9.0000 9.0000 nan nan nan
+H030 nan nan nan nan nan 9.0000 nan nan nan nan nan nan nan nan nan nan nan nan nan nan nan nan nan 9.0000 9.0000 nan 9.0000
+H031 nan nan nan 9.0000 nan 9.0000 9.0000 nan nan nan 9.0000 9.0000 9.0000 9.0000 nan 9.0000 nan nan 9.0000 nan nan nan 9.0000 nan nan nan nan nan
+H012 9.0000 nan nan 9.0000 9.0000 nan nan nan nan 9.0000 nan 9.0000 9.0000 9.0000 nan nan nan nan 9.0000 nan 9.0000 9.0000 nan 9.0000 nan nan nan nan nan
+H005 nan 9.0000 nan 9.0000 9.0000 9.0000 9.0000 nan nan 9.0000 9.0000 9.0000 9.0000 9.0000 nan 9.0000 9.0000 9.0000 9.0000 nan 9.0000 9.0000 nan nan nan nan nan 9.0000 nan 9.0000
+H011 nan nan 9.0000 nan nan nan nan 9.0000 9.0000 nan nan nan nan nan 9.0000 nan nan nan nan 9.0000 nan nan nan nan nan nan 9.0000 nan 9.0000 nan 9.0000
+H022 nan 9.0000 nan nan nan nan 9.0000 9.0000 9.0000 nan 9.0000 nan nan nan nan 9.0000 9.0000 9.0000 nan nan nan nan 9.0000 nan nan nan 9.0000 nan nan 9.0000 nan nan
+H014 nan nan 9.0000 nan nan nan nan 9.0000 9.0000 nan 9.0000 nan nan nan 9.0000 nan nan nan nan 9.0000 nan nan 9.0000 nan nan nan nan nan 9.0000 nan 9.0000 nan nan
+H018 nan 9.0000 nan nan nan nan nan 9.0000 9.0000 nan nan nan nan nan nan nan nan nan nan 9.0000 nan nan nan nan 9.0000 nan 9.0000 nan nan 9.0000 9.0000 nan nan nan
+OUTG 9.0000 nan nan 9.0000 9.0000 9.0000 nan nan nan nan nan nan 9.0000 nan nan 9.0000 nan nan 9.0000 nan nan 9.0000 nan 9.0000 9.0000 nan 9.0000 nan nan nan 9.0000 nan 9.0000 9.0000 nan
diff --git a/trunk/test/paml/unrooted_present/association/baseml.ctl b/trunk/test/paml/unrooted_present/association/baseml.ctl
new file mode 100644
index 0000000000000000000000000000000000000000..e0489c8d6735b0baf74dbdff84e9edcd71f40c83
--- /dev/null
+++ b/trunk/test/paml/unrooted_present/association/baseml.ctl
@@ -0,0 +1,34 @@
+ seqfile = trio2.phy
+ treefile = trio2.phy_phyml_tree.txt
+
+ outfile = mlb * main result file
+ noisy = 9 * 0,1,2,3: how much rubbish on the screen
+ verbose = 1 * 1: detailed output, 0: concise output
+ runmode = 0 * 0: user tree; 1: semi-automatic; 2: automatic
+ * 3: StepwiseAddition; (4,5):PerturbationNNI
+
+ model = 7 * 0:JC69, 1:K80, 2:F81, 3:F84, 4:HKY85
+ * 5:T92, 6:TN93, 7:REV, 8:UNREST, 9:REVu; 10:UNRESTu
+
+ Mgene = 0 * 0:rates, 1:separate; 2:diff pi, 3:diff kapa, 4:all diff
+
+* ndata = 1
+ clock = 1 * 0:no clock, 1:clock; 2:local clock; 3:CombinedAnalysis
+ fix_kappa = 0 * 0: estimate kappa; 1: fix kappa at value below
+ kappa = 5 * initial or fixed kappa
+
+ fix_alpha = 1 * 0: estimate alpha; 1: fix alpha at value below
+ alpha = 0 * initial or fixed alpha, 0:infinity (constant rate)
+ Malpha = 0 * 1: different alpha's for genes, 0: one alpha
+ ncatG = 5 * # of categories in the dG, AdG, or nparK models of rates
+ nparK = 0 * rate-class models. 1:rK, 2:rK&fK, 3:rK&MK(1/K), 4:rK&MK
+
+ nhomo = 0 * 0 & 1: homogeneous, 2: kappa for branches, 3: N1, 4: N2
+ getSE = 0 * 0: don't want them, 1: want S.E.s of estimates
+ RateAncestor = 1 * (0,1,2): rates (alpha>0) or ancestral states
+
+ Small_Diff = 7e-6
+ cleandata = 0 * remove sites with ambiguity data (1:yes, 0:no)?
+* icode = 0 * (with RateAncestor=1. try "GC" in data,model=4,Mgene=4)
+* fix_blength = -1 * 0: ignore, -1: random, 1: initial, 2: fixed
+ method = 0 * 0: simultaneous; 1: one branch at a time
diff --git a/trunk/test/paml/unrooted_present/association/lnf b/trunk/test/paml/unrooted_present/association/lnf
new file mode 100644
index 0000000000000000000000000000000000000000..1677a53d22d2f74a066f020299de375c105fa2b1
--- /dev/null
+++ b/trunk/test/paml/unrooted_present/association/lnf
@@ -0,0 +1,16 @@
+ -1 11 11
+
+
+ 1
+
+ 1 1 -21.8448847646 0.0000 GGGCGCCGCCCCCCGCCCGGGCCGGGGCGCGCGGCC
+ 2 1 -13.6418393080 0.0000 CCCGCCCCCGGGCGCCCCCCCCCCCCCCCCCCCCCC
+ 3 1 -11.6756376430 0.0001 GCGGGCCGCGGGGGGCCGGGGGGGGGCGGCGGGCGG
+ 4 1 -15.6068374149 0.0000 GCGGGCCCCGGGCGGCCCCGGCCGCGCGGCGCGCGG
+ 5 1 -15.9985356580 0.0000 CGCGGGGCCGGGGGCGGGGCGCGCCGCGCGCGCGGG
+ 6 1 -18.0565869859 0.0000 GCCCCGCGGCCCCCGCGCCGCCCGGCGCGGGCCCCC
+ 7 1 -11.4529895174 0.0001 CGGCCCGGGCGCCCGCGGCGCCGCCGGGGGGCCCCG
+ 8 1 -14.7076669554 0.0000 CGGCCCGGGCGCCGGCCGCGCCGCGGCGCGGCCCCG
+ 9 1 -13.3076620282 0.0000 CGGCCCGGGGGCCCCCGGCGCCGCGGGCGGGCCCCG
+ 10 1 -25.2617214477 0.0000 CCCGGGCCCCCCGCCCCCGCCCGGCCCCCCGCGCCC
+ 11 1 -6.4871501505 0.0168 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGC
\ No newline at end of file
diff --git a/trunk/test/paml/unrooted_present/association/mlb b/trunk/test/paml/unrooted_present/association/mlb
new file mode 100644
index 0000000000000000000000000000000000000000..bf607ff79ab204450702ae146b7980a68e17c15a
--- /dev/null
+++ b/trunk/test/paml/unrooted_present/association/mlb
@@ -0,0 +1,193 @@
+
+seed used = 30455833
+
+H019 GCGGCGCCCC G
+H026 GCCCGCGGGC G
+H004 GCGGCCGGGC G
+H020 CGGGGCCCCG G
+H034 GCGGGCCCCG G
+H027 CCCCGGCCCG G
+H023 CCCCGCGGGC G
+H016 GCGCCGGGGC G
+H002 CCCCCGGGGC G
+H015 CGGGGCCCGC G
+H006 CGGGGCGGGC G
+H001 CGGGGCCCCC G
+H010 CCGCGCCCCG G
+H028 CGGGGCCGCC G
+H024 GCGGCGGGCC G
+H017 CCCCGCCCCC G
+H009 CCCCGGGCGC G
+H007 CCGCGCGGGC G
+H033 GCGCGCCCCG G
+H008 GCGGCGGGGC G
+H029 GCGGGCCCCC G
+H003 CCGCCCCCCC G
+H035 CCGCGCGGGG G
+H013 GCGGCGCCCG G
+H032 GCGCCGCGGC G
+H025 GCGGGCGGGC G
+H021 GCCCCGGCGC G
+H030 CCGGGCGGCC G
+H031 GCGGCGGCGC G
+H012 CCCCGGGGGC G
+H005 GCGGCGGGGG G
+H011 CCGCGCCCCC G
+H022 GCGGCCCCCG G
+H014 GCCCGCCCCC G
+H018 CCGGGCCCCC G
+OUTG CCGGGCGGGC C
+
+
+BASEML (in paml 3.14, January 2004) trio2.phy REV Global clock
+ns = 36 ls = 11
+# site patterns = 11
+ 1 1 1 1 1 1 1 1 1 1 1
+
+H019 GCGGCGCCCC G
+H026 ..CCGCGGG. .
+H004 .....CGGG. .
+H020 CG..GC...G .
+H034 ....GC...G .
+H027 C.CCG....G .
+H023 C.CCGCGGG. .
+H016 ...C..GGG. .
+H002 C.CC..GGG. .
+H015 CG..GC..G. .
+H006 CG..GCGGG. .
+H001 CG..GC.... .
+H010 C..CGC...G .
+H028 CG..GC.G.. .
+H024 ......GG.. .
+H017 C.CCGC.... .
+H009 C.CCG.G.G. .
+H007 C..CGCGGG. .
+H033 ...CGC...G .
+H008 ......GGG. .
+H029 ....GC.... .
+H003 C..C.C.... .
+H035 C..CGCGGGG .
+H013 .........G .
+H032 ...C...GG. .
+H025 ....GCGGG. .
+H021 ..CC..G.G. .
+H030 C...GCGG.. .
+H031 ......G.G. .
+H012 C.CCG.GGG. .
+H005 ......GGGG .
+H011 C..CGC.... .
+H022 .....C...G .
+H014 ..CCGC.... .
+H018 C...GC.... .
+OUTG C...GCGGG. C
+
+
+
+
+Frequencies..
+ T C A G
+H019 0.0000 0.5455 0.0000 0.4545
+H026 0.0000 0.4545 0.0000 0.5455
+H004 0.0000 0.3636 0.0000 0.6364
+H020 0.0000 0.4545 0.0000 0.5455
+H034 0.0000 0.4545 0.0000 0.5455
+H027 0.0000 0.6364 0.0000 0.3636
+H023 0.0000 0.5455 0.0000 0.4545
+H016 0.0000 0.3636 0.0000 0.6364
+H002 0.0000 0.5455 0.0000 0.4545
+H015 0.0000 0.4545 0.0000 0.5455
+H006 0.0000 0.2727 0.0000 0.7273
+H001 0.0000 0.5455 0.0000 0.4545
+H010 0.0000 0.6364 0.0000 0.3636
+H028 0.0000 0.4545 0.0000 0.5455
+H024 0.0000 0.3636 0.0000 0.6364
+H017 0.0000 0.8182 0.0000 0.1818
+H009 0.0000 0.5455 0.0000 0.4545
+H007 0.0000 0.4545 0.0000 0.5455
+H033 0.0000 0.5455 0.0000 0.4545
+H008 0.0000 0.2727 0.0000 0.7273
+H029 0.0000 0.5455 0.0000 0.4545
+H003 0.0000 0.8182 0.0000 0.1818
+H035 0.0000 0.3636 0.0000 0.6364
+H013 0.0000 0.4545 0.0000 0.5455
+H032 0.0000 0.4545 0.0000 0.5455
+H025 0.0000 0.2727 0.0000 0.7273
+H021 0.0000 0.5455 0.0000 0.4545
+H030 0.0000 0.4545 0.0000 0.5455
+H031 0.0000 0.3636 0.0000 0.6364
+H012 0.0000 0.4545 0.0000 0.5455
+H005 0.0000 0.1818 0.0000 0.8182
+H011 0.0000 0.7273 0.0000 0.2727
+H022 0.0000 0.5455 0.0000 0.4545
+H014 0.0000 0.7273 0.0000 0.2727
+H018 0.0000 0.6364 0.0000 0.3636
+OUTG 0.0000 0.4545 0.0000 0.5455
+
+Average 0.0000 0.4924 0.0000 0.5076
+
+# constant sites: 0 (0.00%)
+ln Lmax (unconstrained) = -26.376848
+
+Distances: TN93 (kappa) (alpha set at 0.00)
+This matrix is not used in later m.l. analysis.
+
+H019
+H026 9.0000( 0.0000)
+H004 nan(999.0000) nan(999.0000)
+H020 nan(999.0000) 9.0000(999.0000) 9.0000(999.0000)
+H034 nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000)
+H027 nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000)
+H023 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000)
+H016 nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000)
+H002 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000)
+H015 nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000)
+H006 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000)
+H001 nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000)
+H010 nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000)
+H028 nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000)
+H024 nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000)
+H017 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000)
+H009 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000)
+H007 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000)
+H033 nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000)
+H008 nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000)
+H029 nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000)
+H003 nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000)
+H035 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000)
+H013 nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000)
+H032 nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000)
+H025 nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000)
+H021 nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000)
+H030 nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000)
+H031 nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000)
+H012 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000)
+H005 nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000)
+H011 nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000)
+H022 nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000)
+H014 nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000)
+H018 nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000)
+OUTG 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000)
+
+TREE # 1: (((((((((((((((((13, 19), (6, (16, 34))), 32), 22), 35), (((33, (24, 1)), 5), 21)), 4), 12), 10), 14), 28), ((11, ((((((29, 31), (25, 8)), 20), 15), 3), 26)), 36)), 23), 18), (2, 7)), 30), (27, 9), 17); MP score: 39.00
+lnL(ntime: 34 np: 39): -168.041512 +0.000000
+ 37..38 38..39 39..40 40..41 41..42 42..43 43..44 44..45 45..46 46..47 47..48 48..49 49..50 50..51 51..52 52..53 53..13 53..19 52..54 54..6 54..55 55..16 55..34 51..32 50..22 49..35 48..56 56..57 57..58 58..33 58..59 59..24 59..1 57..5 56..21 47..4 46..12 45..10 44..14 43..28 42..60 60..61 61..11 61..62 62..63 63..64 64..65 65..66 66..67 67..29 67..31 66..68 68..25 68..8 65..20 64..15 63..3 62..26 60..36 41..23 40..18 39..69 69..2 69..7 38..30 37..70 70..27 70..9 37..17
+ 0.29506 0.29506 0.25204 0.21996 0.21996 0.19584 0.17361 0.12898 0.11393 0.11393 0.11393 0.10061 0.10061 0.07705 0.07705 0.07705 0.03142 0.05099 0.05099 0.07180 0.05119 0.03192 0.01484 0.19584 0.19584 0.13063 0.09238 0.06437 0.06437 0.06437 0.06437 0.02722 0.07328 0.11731 1.00000 0.21839 0.24112 0.21870 0.24735
+
+tree length = 4.53786
+
+(((((((((((((((((H010, H033), (H027, (H017, H014))), H011), H003), H018), (((H022, (H013, H019)), H034), H029)), H020), H001), H015), H028), H030), ((H006, ((((((H031, H005), (H032, H016)), H008), H024), H004), H025)), OUTG)), H035), H007), (H026, H023)), H012), (H021, H002), H009);
+
+(((((((((((((((((H010: 0.031418, H033: 0.031418): 0.045635, (H027: 0.050987, (H017: 0.050987, H014: 0.050987): 0.000000): 0.026065): 0.000000, H011: 0.077052): 0.000000, H003: 0.077053): 0.023554, H018: 0.100607): 0.000000, (((H022: 0.031920, (H013: 0.014845, H019: 0.014845): 0.017075): 0.019267, H034: 0.051187): 0.020614, H029: 0.071801): 0.028806): 0.013321, H020: 0.113928): 0.000000, H001: 0.113928): 0.000000, H015: 0.113928): 0.015048, H028: 0.128977): 0.044636, H030: 0.173613): 0.022224, ((H006: 0.195836, ((((((H031: 0.064366, H005: 0.064366): 0.000000, (H032: 0.027219, H016: 0.027219): 0.037147): 0.000000, H008: 0.064366): 0.000000, H024: 0.064366): 0.028012, H004: 0.092378): 0.038256, H025: 0.130634): 0.065201): 0.000000, OUTG: 0.195836): 0.000000): 0.024127, H035: 0.219963): 0.000000, H007: 0.219963): 0.032073, (H026: 0.073275, H023: 0.073275): 0.178761): 0.043019, H012: 0.295055): 0.000000, (H021: 0.117306, H002: 0.117306): 0.177750, H009: 0.295056);
+
+Detailed output identifying parameters
+
+Parameters in the rate matrix (REV) (Yang 1994 J Mol Evol 39:105-111):
+
+Rate parameters: 1.00000 0.21839 0.24112 0.21870 0.24735
+Base frequencies: 0.00000 0.49242 0.00000 0.50758
+Rate matrix Q, Average Ts/Tv = 0.0000
+ -4.972327 3.982525 0.000000 0.989801
+ 0.000000 -1.015385 0.000000 1.015385
+ 0.000000 0.870993 -4.976058 4.105065
+ 0.000000 0.985075 0.000000 -0.985075
+
diff --git a/trunk/test/paml/unrooted_present/association/nb_cas_control.txt b/trunk/test/paml/unrooted_present/association/nb_cas_control.txt
new file mode 100644
index 0000000000000000000000000000000000000000..e1584a30f50f647fc78f0643199ed6a4978ed99c
--- /dev/null
+++ b/trunk/test/paml/unrooted_present/association/nb_cas_control.txt
@@ -0,0 +1,36 @@
+H019 m003 c003
+H026 m001 c000
+H004 m011 c002
+H020 m005 c009
+H034 m001 c000
+H027 m001 c002
+H023 m001 c005
+H016 m002 c002
+H002 m009 c003
+H015 m002 c006
+H006 m023 c019
+H001 m024 c039
+H010 m001 c003
+H028 m004 c000
+H024 m001 c000
+H017 m000 c008
+H009 m005 c010
+H007 m025 c036
+H033 m000 c001
+H008 m028 c019
+H029 m001 c003
+H003 m002 c000
+H035 m001 c000
+H013 m015 c005
+H032 m000 c001
+H025 m002 c003
+H021 m011 c002
+H030 m001 c001
+H031 m001 c000
+H012 m001 c002
+H005 m002 c002
+H011 m003 c008
+H022 m009 c001
+H014 m002 c003
+H018 m002 c002
+OUTG m004 c004
diff --git a/trunk/test/paml/unrooted_present/association/rst b/trunk/test/paml/unrooted_present/association/rst
new file mode 100644
index 0000000000000000000000000000000000000000..59865dec96e71f92c85e8e25ac2d576d449ed223
--- /dev/null
+++ b/trunk/test/paml/unrooted_present/association/rst
@@ -0,0 +1,457 @@
+Supplemental results for BASEML
+
+seqf: trio2.phy
+treef: trio2.phy_phyml_tree.txt
+
+
+TREE # 1
+
+Ancestral reconstruction by BASEML.
+
+(((((((((((((((((H010: 0.031418, H033: 0.031418): 0.045635, (H027: 0.050987, (H017: 0.050987, H014: 0.050987): 0.000000): 0.026065): 0.000000, H011: 0.077052): 0.000000, H003: 0.077053): 0.023554, H018: 0.100607): 0.000000, (((H022: 0.031920, (H013: 0.014845, H019: 0.014845): 0.017075): 0.019267, H034: 0.051187): 0.020614, H029: 0.071801): 0.028806): 0.013321, H020: 0.113928): 0.000000, H001: 0.113928): 0.000000, H015: 0.113928): 0.015048, H028: 0.128977): 0.044636, H030: 0.173613): 0.022224, ((H006: 0.195836, ((((((H031: 0.064366, H005: 0.064366): 0.000000, (H032: 0.027219, H016: 0.027219): 0.037147): 0.000000, H008: 0.064366): 0.000000, H024: 0.064366): 0.028012, H004: 0.092378): 0.038256, H025: 0.130634): 0.065201): 0.000000, OUTG: 0.195836): 0.000000): 0.024127, H035: 0.219963): 0.000000, H007: 0.219963): 0.032073, (H026: 0.073275, H023: 0.073275): 0.178761): 0.043019, H012: 0.295055): 0.000000, (H021: 0.117306, H002: 0.117306): 0.177750, H009: 0.295056);
+
+(((((((((((((((((13, 19), (6, (16, 34))), 32), 22), 35), (((33, (24, 1)), 5), 21)), 4), 12), 10), 14), 28), ((11, ((((((29, 31), (25, 8)), 20), 15), 3), 26)), 36)), 23), 18), (2, 7)), 30), (27, 9), 17);
+
+ 37..38 38..39 39..40 40..41 41..42 42..43 43..44 44..45 45..46 46..47 47..48 48..49 49..50 50..51 51..52 52..53 53..13 53..19 52..54 54..6 54..55 55..16 55..34 51..32 50..22 49..35 48..56 56..57 57..58 58..33 58..59 59..24 59..1 57..5 56..21 47..4 46..12 45..10 44..14 43..28 42..60 60..61 61..11 61..62 62..63 63..64 64..65 65..66 66..67 67..29 67..31 66..68 68..25 68..8 65..20 64..15 63..3 62..26 60..36 41..23 40..18 39..69 69..2 69..7 38..30 37..70 70..27 70..9 37..17
+
+tree with node labels for Rod Page's TreeView
+(((((((((((((((((13_H010: 0.031418, 19_H033: 0.031418) 53 : 0.045635, (6_H027: 0.050987, (16_H017: 0.050987, 34_H014: 0.050987) 55 : 0.000000) 54 : 0.026065) 52 : 0.000000, 32_H011: 0.077052) 51 : 0.000000, 22_H003: 0.077053) 50 : 0.023554, 35_H018: 0.100607) 49 : 0.000000, (((33_H022: 0.031920, (24_H013: 0.014845, 1_H019: 0.014845) 59 : 0.017075) 58 : 0.019267, 5_H034: 0.051187) 57 : 0.020614, 21_H029: 0.071801) 56 : 0.028806) 48 : 0.013321, 4_H020: 0.113928) 47 : 0.000000, 12_H001: 0.113928) 46 : 0.000000, 10_H015: 0.113928) 45 : 0.015048, 14_H028: 0.128977) 44 : 0.044636, 28_H030: 0.173613) 43 : 0.022224, ((11_H006: 0.195836, ((((((29_H031: 0.064366, 31_H005: 0.064366) 67 : 0.000000, (25_H032: 0.027219, 8_H016: 0.027219) 68 : 0.037147) 66 : 0.000000, 20_H008: 0.064366) 65 : 0.000000, 15_H024: 0.064366) 64 : 0.028012, 3_H004: 0.092378) 63 : 0.038256, 26_H025: 0.130634) 62 : 0.065201) 61 : 0.000000, 36_OUTG: 0.195836) 60 : 0.000000) 42 : 0.024127, 23_H035: 0.219963) 41 : 0.000000, 18_H007: 0.219963) 40 : 0.032073, (2_H026: 0.073275, 7_H023: 0.073275) 69 : 0.178761) 39 : 0.043019, 30_H012: 0.295055) 38 : 0.000000, (27_H021: 0.117306, 9_H002: 0.117306) 70 : 0.177750, 17_H009: 0.295056) 37 ;
+
+Nodes 37 to 70 are ancestral
+
+(1) Marginal reconstruction of ancestral sequences (eqn. 4 in Yang et al. 1995 Genetics 141:1641-1650).
+
+
+Prob of best character at each node, listed by site
+
+Site Freq Data:
+
+ 1 1 GGGCGCCGCCCCCCGCCCGGGCCGGGGCGCGCGGCC: C(0.994) C(0.994) C(0.996) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(0.999) C(0.999) C(1.000) C(1.000) C(1.000) C(0.957) C(0.999) C(0.999) G(0.948) G(0.998) G(1.000) G(1.000) C(1.000) C(1.000) G(0.924) G(0.995) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) C(0.848) C(0.847)
+ 2 1 CCCGCCCCCGGGCGCCCCCCCCCCCCCCCCCCCCCC: C(0.999) C(0.999) C(1.000) C(1.000) C(1.000) C(0.995) C(0.938) G(0.745) G(0.774) G(0.774) G(0.774) C(0.996) C(0.996) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(0.995) C(0.995) C(0.999) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(0.999) C(0.998)
+ 3 1 GCGGGCCGCGGGGGGCCGGGGGGGGGCGGCGGGCGG: C(0.937) C(0.937) C(0.760) G(0.973) G(0.973) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) C(0.995) C(0.995) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) C(0.992) C(0.993)
+ 4 1 GCGGGCCCCGGGCGGCCCCGGCCGCGCGGCGCGCGG: C(0.994) C(0.994) C(0.981) C(0.926) C(0.926) G(0.997) G(0.999) G(1.000) G(1.000) G(1.000) G(1.000) G(0.998) G(0.998) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(0.997) G(0.997) G(0.999) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) C(0.981) C(0.999) C(0.997)
+ 5 1 CGCGGGGCCGGGGGCGGGGCGCGCCGCGCGCGCGGG: G(0.979) G(0.979) G(0.997) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(0.995) G(0.944) C(0.974) C(1.000) G(1.000) G(1.000) G(0.826) C(0.948) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) G(0.999) C(0.930)
+ 6 1 GCCCCGCGGCCCCCGCGCCGCCCGGCGCGGGCCCCC: G(0.755) G(0.755) C(0.908) C(0.997) C(0.997) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(0.999) C(0.999) C(1.000) C(0.998) C(0.964) G(0.988) C(1.000) C(1.000) C(0.976) C(0.869) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) C(0.996) G(0.980)
+ 7 1 CGGCCCGGGCGCCCGCGGCGCCGCCGGGGGGCCCCG: G(0.999) G(0.999) G(1.000) G(1.000) G(1.000) G(1.000) G(0.923) C(0.962) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(0.964) G(0.999) G(0.998)
+ 8 1 CGGCCCGGGCGCCGGCCGCGCCGCGGCGCGGCCCCG: G(0.952) G(0.952) G(0.994) G(1.000) G(1.000) G(1.000) G(0.976) G(0.705) C(0.999) C(0.999) C(0.999) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(0.999) G(0.816)
+ 9 1 CGGCCCGGGGGCCCCCGGCGCCGCGGGCGGGCCCCG: G(0.999) G(0.999) G(1.000) G(1.000) G(1.000) G(0.998) C(0.737) C(0.988) C(0.999) C(0.999) C(0.999) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) G(0.998) G(0.998) G(0.999) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(0.999) G(0.998)
+ 10 1 CCCGGGCCCCCCGCCCCCGCCCGGCCCCCCGCGCCC: C(0.999) C(0.999) C(0.999) C(0.999) C(0.999) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) G(0.979) C(0.999) C(0.999) C(0.920) G(0.894) G(0.932) G(0.918) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(0.999) C(0.998)
+ 11 1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGC: G(0.999) G(0.999) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(0.999) G(0.998)
+
+Summary of changes along branches.
+Check root for directions of change.
+
+Branch 1: 37..38
+
+
+
+Branch 2: 38..39
+
+ 6 G 0.755 -> C 0.908
+
+
+Branch 3: 39..40
+
+ 3 C 0.760 -> G 0.973
+
+
+Branch 4: 40..41
+
+
+
+Branch 5: 41..42
+
+ 4 C 0.926 -> G 0.997
+
+
+Branch 6: 42..43
+
+ 9 G 0.998 -> C 0.737
+
+
+Branch 7: 43..44
+
+ 2 C 0.938 -> G 0.745
+ 7 G 0.923 -> C 0.962
+
+
+Branch 8: 44..45
+
+ 8 G 0.705 -> C 0.999
+
+
+Branch 9: 45..46
+
+
+
+Branch 10: 46..47
+
+
+
+Branch 11: 47..48
+
+ 2 G 0.774 -> C 0.996
+
+
+Branch 12: 48..49
+
+
+
+Branch 13: 49..50
+
+ 4 G 0.998 -> C 1.000
+
+
+Branch 14: 50..51
+
+
+
+Branch 15: 51..52
+
+
+
+Branch 16: 52..53
+
+ 10 C 1.000 -> G 0.979
+
+
+Branch 17: 53..13 (H010)
+
+
+
+Branch 18: 53..19 (H033)
+
+ 1 C 0.957 -> G
+
+
+Branch 19: 52..54
+
+ 3 G 1.000 -> C 0.995
+
+
+Branch 20: 54..6 (H027)
+
+ 6 C 0.999 -> G
+ 10 C 0.999 -> G
+
+
+Branch 21: 54..55
+
+
+
+Branch 22: 55..16 (H017)
+
+
+
+Branch 23: 55..34 (H014)
+
+ 1 C 0.999 -> G
+
+
+Branch 24: 51..32 (H011)
+
+
+
+Branch 25: 50..22 (H003)
+
+ 5 G 1.000 -> C
+
+
+Branch 26: 49..35 (H018)
+
+
+
+Branch 27: 48..56
+
+ 1 C 0.999 -> G 0.948
+
+
+Branch 28: 56..57
+
+ 10 C 0.920 -> G 0.894
+
+
+Branch 29: 57..58
+
+ 5 G 0.944 -> C 0.974
+
+
+Branch 30: 58..33 (H022)
+
+
+
+Branch 31: 58..59
+
+ 6 C 0.964 -> G 0.988
+
+
+Branch 32: 59..24 (H013)
+
+
+
+Branch 33: 59..1 (H019)
+
+ 10 G 0.918 -> C
+
+
+Branch 34: 57..5 (H034)
+
+
+
+Branch 35: 56..21 (H029)
+
+
+
+Branch 36: 47..4 (H020)
+
+ 10 C 1.000 -> G
+
+
+Branch 37: 46..12 (H001)
+
+
+
+Branch 38: 45..10 (H015)
+
+ 9 C 0.999 -> G
+
+
+Branch 39: 44..14 (H028)
+
+
+
+Branch 40: 43..28 (H030)
+
+
+
+Branch 41: 42..60
+
+
+
+Branch 42: 60..61
+
+
+
+Branch 43: 61..11 (H006)
+
+ 2 C 0.995 -> G
+
+
+Branch 44: 61..62
+
+ 1 C 1.000 -> G 0.924
+
+
+Branch 45: 62..63
+
+ 5 G 0.826 -> C 0.948
+
+
+Branch 46: 63..64
+
+ 6 C 0.869 -> G 1.000
+
+
+Branch 47: 64..65
+
+
+
+Branch 48: 65..66
+
+
+
+Branch 49: 66..67
+
+
+
+Branch 50: 67..29 (H031)
+
+ 8 G 1.000 -> C
+
+
+Branch 51: 67..31 (H005)
+
+ 10 C 1.000 -> G
+
+
+Branch 52: 66..68
+
+ 4 G 1.000 -> C 0.981
+
+
+Branch 53: 68..25 (H032)
+
+ 7 G 0.964 -> C
+
+
+Branch 54: 68..8 (H016)
+
+
+
+Branch 55: 65..20 (H008)
+
+
+
+Branch 56: 64..15 (H024)
+
+ 9 G 1.000 -> C
+
+
+Branch 57: 63..3 (H004)
+
+
+
+Branch 58: 62..26 (H025)
+
+
+
+Branch 59: 60..36 (OUTG)
+
+ 11 G 1.000 -> C
+
+
+Branch 60: 41..23 (H035)
+
+ 10 C 0.999 -> G
+
+
+Branch 61: 40..18 (H007)
+
+
+
+Branch 62: 39..69
+
+
+
+Branch 63: 69..2 (H026)
+
+ 1 C 0.848 -> G
+
+
+Branch 64: 69..7 (H023)
+
+
+
+Branch 65: 38..30 (H012)
+
+
+
+Branch 66: 37..70
+
+ 5 G 0.979 -> C 0.930
+
+
+Branch 67: 70..27 (H021)
+
+ 1 C 0.847 -> G
+ 8 G 0.816 -> C
+
+
+Branch 68: 70..9 (H002)
+
+
+
+Branch 69: 37..17 (H009)
+
+ 8 G 0.952 -> C
+
+
+
+
+List of extant and reconstructed sequences
+
+H019 GCGGCGCCCC G
+H026 GCCCGCGGGC G
+H004 GCGGCCGGGC G
+H020 CGGGGCCCCG G
+H034 GCGGGCCCCG G
+H027 CCCCGGCCCG G
+H023 CCCCGCGGGC G
+H016 GCGCCGGGGC G
+H002 CCCCCGGGGC G
+H015 CGGGGCCCGC G
+H006 CGGGGCGGGC G
+H001 CGGGGCCCCC G
+H010 CCGCGCCCCG G
+H028 CGGGGCCGCC G
+H024 GCGGCGGGCC G
+H017 CCCCGCCCCC G
+H009 CCCCGGGCGC G
+H007 CCGCGCGGGC G
+H033 GCGCGCCCCG G
+H008 GCGGCGGGGC G
+H029 GCGGGCCCCC G
+H003 CCGCCCCCCC G
+H035 CCGCGCGGGG G
+H013 GCGGCGCCCG G
+H032 GCGCCGCGGC G
+H025 GCGGGCGGGC G
+H021 GCCCCGGCGC G
+H030 CCGGGCGGCC G
+H031 GCGGCGGCGC G
+H012 CCCCGGGGGC G
+H005 GCGGCGGGGG G
+H011 CCGCGCCCCC G
+H022 GCGGCCCCCG G
+H014 GCCCGCCCCC G
+H018 CCGGGCCCCC G
+OUTG CCGGGCGGGC C
+node #37 CCCCGGGGGC G
+node #38 CCCCGGGGGC G
+node #39 CCCCGCGGGC G
+node #40 CCGCGCGGGC G
+node #41 CCGCGCGGGC G
+node #42 CCGGGCGGGC G
+node #43 CCGGGCGGCC G
+node #44 CGGGGCCGCC G
+node #45 CGGGGCCCCC G
+node #46 CGGGGCCCCC G
+node #47 CGGGGCCCCC G
+node #48 CCGGGCCCCC G
+node #49 CCGGGCCCCC G
+node #50 CCGCGCCCCC G
+node #51 CCGCGCCCCC G
+node #52 CCGCGCCCCC G
+node #53 CCGCGCCCCG G
+node #54 CCCCGCCCCC G
+node #55 CCCCGCCCCC G
+node #56 GCGGGCCCCC G
+node #57 GCGGGCCCCG G
+node #58 GCGGCCCCCG G
+node #59 GCGGCGCCCG G
+node #60 CCGGGCGGGC G
+node #61 CCGGGCGGGC G
+node #62 GCGGGCGGGC G
+node #63 GCGGCCGGGC G
+node #64 GCGGCGGGGC G
+node #65 GCGGCGGGGC G
+node #66 GCGGCGGGGC G
+node #67 GCGGCGGGGC G
+node #68 GCGCCGGGGC G
+node #69 CCCCGCGGGC G
+node #70 CCCCCGGGGC G
+
+
+Overall accuracy of the 34 ancestral sequences:
+ 0.96430 0.96430 0.96673 0.99030 0.99030 0.99897 0.96110 0.94544 0.97923 0.97923 0.97923 0.99936 0.99936 0.99992 0.99992 0.99992 0.99410 0.99918 0.99918 0.98743 0.98479 0.98822 0.99134 0.99897 0.99897 0.97480 0.98281 1.00000 1.00000 1.00000 1.00000 0.99492 0.98441 0.95925
+for a site.
+
+ 0.64910 0.64910 0.66689 0.89584 0.89584 0.98872 0.62168 0.49918 0.77199 0.77199 0.77199 0.99302 0.99302 0.99913 0.99913 0.99913 0.93600 0.99103 0.99103 0.86669 0.83945 0.87553 0.90582 0.98872 0.98872 0.74263 0.81876 0.99995 0.99995 0.99995 0.99995 0.94489 0.83161 0.61662
+for the sequence.
+
+
+Counts of changes at sites
+
+ 1 CG CG CG CG CG CG (6)
+ 2 CG CG GC (3)
+ 3 CG GC (2)
+ 4 CG GC GC (3)
+ 5 GC GC GC GC (4)
+ 6 CG GC CG CG (4)
+ 7 GC GC (2)
+ 8 GC GC GC GC (4)
+ 9 CG GC GC (3)
+ 10 GC CG CG CG CG CG CG (7)
+ 11 GC (1)
+
+
diff --git a/trunk/test/paml/unrooted_present/association/rst1 b/trunk/test/paml/unrooted_present/association/rst1
new file mode 100644
index 0000000000000000000000000000000000000000..8b137891791fe96927ad78e64b0aad7bded08bdc
--- /dev/null
+++ b/trunk/test/paml/unrooted_present/association/rst1
@@ -0,0 +1 @@
+
diff --git a/trunk/test/paml/unrooted_present/association/rub b/trunk/test/paml/unrooted_present/association/rub
new file mode 100644
index 0000000000000000000000000000000000000000..d9618a2378acf4ef2a7c634bd7dad824c1241f0c
--- /dev/null
+++ b/trunk/test/paml/unrooted_present/association/rub
@@ -0,0 +1,40 @@
+
+
+TREE # 1
+
+ 1 114.9094 191.446920 x: 0.80189 0.86355 1.00000 0.99305 0.89074 0.85919 0.70270 0.75174 0.74732 0.88922 0.84271 0.64707 0.57975 0.85413 0.86112 0.86851 0.77260 0.50918 0.42855 0.81496 0.71039 0.53319 0.76726 0.74305 0.74626 0.78847 0.82586 0.87508 0.51039 0.47093 0.87785 0.76907 0.53027 0.67918 1.00000 0.21839 0.24112 0.21870 0.24735
+ 2 35.7482 180.282991 x: 0.60638 0.75031 0.91597 0.96161 0.91469 0.89863 0.78734 0.81227 0.84651 1.00000 0.98309 0.79766 0.70321 0.86828 0.92995 0.91683 0.74822 0.55330 0.44962 0.79545 0.71055 0.54220 0.73374 0.72619 0.74825 0.75977 0.79572 0.85004 0.56245 0.55610 0.89935 0.73261 0.48828 0.65383 1.00000 0.21839 0.24112 0.21870 0.24735
+ 3 39.2096 178.600236 x: 0.55500 0.73939 0.91041 0.95773 0.93441 0.91006 0.78748 0.80006 0.84199 1.00000 1.00000 0.80649 0.71640 0.86085 0.94060 0.92616 0.74031 0.56059 0.45471 0.78710 0.70829 0.54275 0.72619 0.74652 0.77024 0.76556 0.79645 0.84572 0.58182 0.57891 0.90657 0.72393 0.47968 0.64540 1.00000 0.21839 0.24112 0.21870 0.24735
+ 4 27.2762 174.769630 x: 0.42076 0.82026 0.94820 0.88667 0.99366 0.83049 0.80617 0.79557 0.86716 1.00000 1.00000 0.82582 0.78834 0.84595 1.00000 0.97842 0.70130 0.58890 0.48244 0.77342 0.70965 0.55395 0.69600 0.80490 0.83268 0.75295 0.77519 0.82405 0.64095 0.65367 0.93786 0.69273 0.46149 0.60485 1.00000 0.21839 0.24112 0.21870 0.24735
+ 5 12.1266 174.514561 x: 0.41547 0.82949 0.94094 0.88163 1.00000 0.83355 0.80451 0.79395 0.86516 1.00000 1.00000 0.82666 0.79703 0.84356 1.00000 0.98686 0.69532 0.59082 0.48705 0.77445 0.71091 0.55602 0.69294 0.80542 0.83391 0.74780 0.77273 0.82394 0.64505 0.66005 0.94203 0.68995 0.46107 0.60029 1.00000 0.21839 0.24112 0.21870 0.24735
+ 6 16.2354 174.212559 x: 0.41056 0.84010 0.93308 0.88836 1.00000 0.83485 0.80441 0.79469 0.86789 1.00000 1.00000 0.82655 0.80741 0.84140 1.00000 1.00000 0.68648 0.59233 0.49438 0.77292 0.71105 0.55773 0.68912 0.80901 0.83956 0.74903 0.77485 0.82371 0.65222 0.66976 0.94852 0.68631 0.45976 0.59471 1.00000 0.21839 0.24112 0.21870 0.24735
+ 7 11.6723 173.108877 x: 0.31191 0.94409 0.84996 0.92905 1.00000 0.83020 0.87186 0.80407 0.87324 1.00000 1.00000 0.80127 0.82279 0.81341 1.00000 1.00000 0.60786 0.56252 0.56538 0.75462 0.70188 0.55931 0.67567 0.81739 0.86575 0.76618 0.78112 0.77786 0.66549 0.69793 1.00000 0.67450 0.46263 0.56482 1.00000 0.21839 0.24112 0.21870 0.24735
+ 8 8.2869 172.274253 x: 0.31548 1.00000 0.80011 0.89267 1.00000 0.83067 0.92049 0.77063 0.85964 1.00000 1.00000 0.83363 0.82751 0.80298 1.00000 1.00000 0.54971 0.54329 0.62734 0.72647 0.68624 0.55278 0.66399 0.85017 0.91268 0.78895 0.77460 0.72294 0.68764 0.73296 1.00000 0.66016 0.45682 0.55097 1.00000 0.21839 0.24112 0.21870 0.24735
+ 9 4.8989 170.929203 x: 0.28760 1.00000 0.88894 0.89522 1.00000 0.85571 0.86219 0.72371 0.87567 1.00000 1.00000 0.86968 0.85904 0.80581 1.00000 1.00000 0.41553 0.52518 0.80802 0.72409 0.68059 0.55594 0.63186 0.91528 1.00000 0.69126 0.67428 0.61595 0.73520 0.81452 1.00000 0.62084 0.44940 0.51044 1.00000 0.21839 0.24112 0.21870 0.24735
+ 10 6.1884 169.898572 x: 0.30047 1.00000 0.93660 0.85048 1.00000 0.85529 0.86699 0.76591 0.88060 1.00000 1.00000 0.79718 0.90393 0.79099 1.00000 1.00000 0.36311 0.55457 0.92671 0.74225 0.69376 0.57098 0.60342 1.00000 1.00000 0.65733 0.67253 0.64853 0.81481 0.90522 1.00000 0.58852 0.43462 0.47220 1.00000 0.21839 0.24112 0.21870 0.24735
+ 11 7.4526 169.337351 x: 0.29420 1.00000 0.92800 0.84165 1.00000 0.83537 0.84899 0.76359 0.87523 1.00000 1.00000 0.80750 0.93850 0.79905 1.00000 1.00000 0.35874 0.57699 1.00000 0.75031 0.70109 0.57921 0.58923 1.00000 1.00000 0.65818 0.69291 0.68629 0.86971 0.96302 1.00000 0.57080 0.41983 0.45360 1.00000 0.21839 0.24112 0.21870 0.24735
+ 12 3.4687 168.953167 x: 0.29856 1.00000 0.92525 0.85865 1.00000 0.82307 0.86572 0.75408 0.85821 1.00000 1.00000 0.82287 0.96994 0.77752 1.00000 1.00000 0.40258 0.59040 1.00000 0.74568 0.70450 0.58554 0.58244 1.00000 1.00000 0.65143 0.68506 0.68591 0.90214 1.00000 1.00000 0.55808 0.39869 0.44353 1.00000 0.21839 0.24112 0.21870 0.24735
+ 13 4.8257 168.655235 x: 0.29523 1.00000 0.91808 0.84893 1.00000 0.83921 0.86571 0.75124 0.87561 1.00000 1.00000 0.82276 1.00000 0.77364 1.00000 1.00000 0.43667 0.59682 1.00000 0.73688 0.70367 0.58803 0.57644 1.00000 1.00000 0.65583 0.68089 0.67684 0.93398 1.00000 1.00000 0.54596 0.37661 0.43786 1.00000 0.21839 0.24112 0.21870 0.24735
+ 14 1.8651 168.338092 x: 0.28755 1.00000 0.92515 0.84660 1.00000 0.86138 0.87502 0.76792 0.85624 1.00000 1.00000 0.86001 1.00000 0.79545 1.00000 1.00000 0.38042 0.60299 1.00000 0.75329 0.71034 0.59621 0.55082 1.00000 1.00000 0.66700 0.69686 0.68400 1.00000 1.00000 1.00000 0.52294 0.35365 0.43907 1.00000 0.21839 0.24112 0.21870 0.24735
+ 15 2.1555 168.206404 x: 0.30210 1.00000 0.88499 0.86507 1.00000 0.85985 0.86550 0.76001 0.87589 1.00000 1.00000 0.86887 1.00000 0.76141 1.00000 1.00000 0.30318 0.63521 1.00000 0.73840 0.71073 0.60845 0.50036 1.00000 1.00000 0.65589 0.69924 0.68488 1.00000 1.00000 1.00000 0.47074 0.31768 0.42829 1.00000 0.21839 0.24112 0.21870 0.24735
+ 16 0.8376 168.156242 x: 0.29707 1.00000 0.88355 0.86823 1.00000 0.87634 0.88166 0.73867 0.86500 1.00000 1.00000 0.85134 1.00000 0.76899 1.00000 1.00000 0.31282 0.65089 1.00000 0.71513 0.70653 0.61406 0.47358 1.00000 1.00000 0.64885 0.70202 0.69384 1.00000 1.00000 1.00000 0.43999 0.30216 0.41522 1.00000 0.21839 0.24112 0.21870 0.24735
+ 17 0.4736 168.101192 x: 0.29496 1.00000 0.88379 0.86444 1.00000 0.88515 0.88212 0.73181 0.87682 1.00000 1.00000 0.86581 1.00000 0.74459 1.00000 1.00000 0.36648 0.64090 1.00000 0.73184 0.71799 0.62813 0.45466 1.00000 1.00000 0.65238 0.71394 0.70404 1.00000 1.00000 1.00000 0.41193 0.31033 0.37805 1.00000 0.21839 0.24112 0.21870 0.24735
+ 18 0.6440 168.067611 x: 0.29869 1.00000 0.86751 0.87064 1.00000 0.88266 0.88142 0.74566 0.87433 1.00000 1.00000 0.87396 1.00000 0.76860 1.00000 1.00000 0.39784 0.65740 1.00000 0.72553 0.71778 0.63223 0.44733 1.00000 1.00000 0.64400 0.70488 0.69827 1.00000 1.00000 1.00000 0.40071 0.30414 0.36957 1.00000 0.21839 0.24112 0.21870 0.24735
+ 19 0.4734 168.049203 x: 0.29721 1.00000 0.86764 0.86898 1.00000 0.88770 0.87974 0.74377 0.87930 1.00000 1.00000 0.88356 1.00000 0.76310 1.00000 1.00000 0.41187 0.67070 1.00000 0.70854 0.71094 0.62614 0.45754 1.00000 1.00000 0.65738 0.70390 0.70190 1.00000 1.00000 1.00000 0.41765 0.29050 0.39692 1.00000 0.21839 0.24112 0.21870 0.24735
+ 20 0.2052 168.045422 x: 0.29665 1.00000 0.86179 0.87066 1.00000 0.89046 0.88364 0.74001 0.88058 1.00000 1.00000 0.88239 1.00000 0.76481 1.00000 1.00000 0.41144 0.66651 1.00000 0.71845 0.71544 0.62490 0.46267 1.00000 1.00000 0.65981 0.70025 0.69942 1.00000 1.00000 1.00000 0.42160 0.28019 0.40304 1.00000 0.21839 0.24112 0.21870 0.24735
+ 21 0.1018 168.043172 x: 0.29668 1.00000 0.85702 0.87211 1.00000 0.89224 0.88431 0.73964 0.88173 1.00000 1.00000 0.88362 1.00000 0.76763 1.00000 1.00000 0.40853 0.65798 1.00000 0.71357 0.71294 0.62226 0.46764 1.00000 1.00000 0.66323 0.70217 0.69779 1.00000 1.00000 1.00000 0.42547 0.28757 0.39628 1.00000 0.21839 0.24112 0.21870 0.24735
+ 22 0.0611 168.042340 x: 0.29535 1.00000 0.85574 0.87177 1.00000 0.89270 0.88531 0.74230 0.88115 1.00000 1.00000 0.88387 1.00000 0.76547 1.00000 1.00000 0.40777 0.66241 1.00000 0.71459 0.71239 0.62252 0.46818 1.00000 1.00000 0.66413 0.70487 0.69470 1.00000 1.00000 1.00000 0.42524 0.29373 0.39764 1.00000 0.21839 0.24112 0.21870 0.24735
+ 23 0.0438 168.041762 x: 0.29502 1.00000 0.85553 0.87208 1.00000 0.89088 0.88741 0.74021 0.88407 1.00000 1.00000 0.88324 1.00000 0.76695 1.00000 1.00000 0.40765 0.66235 1.00000 0.71442 0.71276 0.62390 0.46577 1.00000 1.00000 0.66600 0.70722 0.69506 1.00000 1.00000 1.00000 0.42349 0.29380 0.39884 1.00000 0.21839 0.24112 0.21870 0.24735
+ 24 0.0548 168.041571 x: 0.29488 1.00000 0.85524 0.87186 1.00000 0.89041 0.88676 0.74261 0.88332 1.00000 1.00000 0.88332 1.00000 0.76618 1.00000 1.00000 0.40786 0.66074 1.00000 0.71335 0.71266 0.62382 0.46460 1.00000 1.00000 0.66717 0.70698 0.69541 1.00000 1.00000 1.00000 0.42261 0.29085 0.39841 1.00000 0.21839 0.24112 0.21870 0.24735
+ 25 0.0157 168.041542 x: 0.29492 1.00000 0.85509 0.87200 1.00000 0.89029 0.88681 0.74265 0.88341 1.00000 1.00000 0.88314 1.00000 0.76606 1.00000 1.00000 0.40773 0.66160 1.00000 0.71355 0.71273 0.62324 0.46531 1.00000 1.00000 0.66756 0.70646 0.69615 1.00000 1.00000 1.00000 0.42336 0.29046 0.39714 1.00000 0.21839 0.24112 0.21870 0.24735
+ 26 0.0042 168.041518 x: 0.29503 1.00000 0.85445 0.87239 1.00000 0.89033 0.88659 0.74293 0.88331 1.00000 1.00000 0.88293 1.00000 0.76599 1.00000 1.00000 0.40795 0.66161 1.00000 0.71353 0.71307 0.62378 0.46565 1.00000 1.00000 0.66706 0.70707 0.69690 1.00000 1.00000 1.00000 0.42303 0.29082 0.39765 1.00000 0.21839 0.24112 0.21870 0.24735
+ 27 0.0053 168.041515 x: 0.29506 1.00000 0.85434 0.87249 1.00000 0.89033 0.88652 0.74294 0.88329 1.00000 1.00000 0.88291 1.00000 0.76599 1.00000 1.00000 0.40804 0.66165 1.00000 0.71376 0.71282 0.62346 0.46527 1.00000 1.00000 0.66712 0.70721 0.69679 1.00000 1.00000 1.00000 0.42301 0.29083 0.39768 1.00000 0.21839 0.24112 0.21870 0.24735
+ 28 0.0013 168.041513 x: 0.29505 1.00000 0.85426 0.87264 1.00000 0.89032 0.88658 0.74292 0.88332 1.00000 1.00000 0.88303 1.00000 0.76589 1.00000 1.00000 0.40790 0.66163 1.00000 0.71371 0.71287 0.62349 0.46496 1.00000 1.00000 0.66695 0.70716 0.69691 1.00000 1.00000 1.00000 0.42313 0.29083 0.39764 1.00000 0.21839 0.24112 0.21870 0.24735
+ 29 0.0028 168.041512 x: 0.29506 1.00000 0.85421 0.87274 1.00000 0.89031 0.88653 0.74290 0.88330 1.00000 1.00000 0.88307 1.00000 0.76587 1.00000 1.00000 0.40784 0.66170 1.00000 0.71368 0.71296 0.62365 0.46498 1.00000 1.00000 0.66709 0.70716 0.69675 1.00000 1.00000 1.00000 0.42301 0.29077 0.39756 1.00000 0.21839 0.24112 0.21870 0.24735
+ 30 0.0015 168.041512 x: 0.29506 1.00000 0.85420 0.87275 1.00000 0.89031 0.88654 0.74289 0.88331 1.00000 1.00000 0.88308 1.00000 0.76586 1.00000 1.00000 0.40781 0.66170 1.00000 0.71369 0.71289 0.62360 0.46507 1.00000 1.00000 0.66707 0.70716 0.69677 1.00000 1.00000 1.00000 0.42288 0.29075 0.39756 1.00000 0.21839 0.24112 0.21870 0.24735
+ 31 0.0001 168.041512 x: 0.29505 1.00000 0.85420 0.87275 1.00000 0.89031 0.88653 0.74289 0.88332 1.00000 1.00000 0.88308 1.00000 0.76587 1.00000 1.00000 0.40778 0.66171 1.00000 0.71368 0.71293 0.62357 0.46506 1.00000 1.00000 0.66706 0.70716 0.69677 1.00000 1.00000 1.00000 0.42286 0.29074 0.39757 1.00000 0.21839 0.24112 0.21870 0.24735
+ 32 0.0003 168.041512 x: 0.29505 1.00000 0.85420 0.87274 1.00000 0.89032 0.88652 0.74290 0.88333 1.00000 1.00000 0.88307 1.00000 0.76588 1.00000 1.00000 0.40775 0.66172 1.00000 0.71368 0.71290 0.62360 0.46505 1.00000 1.00000 0.66706 0.70715 0.69677 1.00000 1.00000 1.00000 0.42287 0.29073 0.39757 1.00000 0.21839 0.24112 0.21870 0.24735
+ 33 0.0000 168.041512 x: 0.29506 1.00000 0.85420 0.87275 1.00000 0.89031 0.88652 0.74290 0.88333 1.00000 1.00000 0.88307 1.00000 0.76588 1.00000 1.00000 0.40775 0.66172 1.00000 0.71368 0.71290 0.62359 0.46505 1.00000 1.00000 0.66706 0.70715 0.69677 1.00000 1.00000 1.00000 0.42287 0.29074 0.39757 1.00000 0.21839 0.24112 0.21870 0.24735
+ 34 0.0000 168.041512 x: 0.29506 1.00000 0.85420 0.87275 1.00000 0.89031 0.88652 0.74290 0.88333 1.00000 1.00000 0.88307 1.00000 0.76588 1.00000 1.00000 0.40775 0.66172 1.00000 0.71368 0.71290 0.62359 0.46506 1.00000 1.00000 0.66706 0.70715 0.69676 1.00000 1.00000 1.00000 0.42287 0.29073 0.39757 1.00000 0.21839 0.24112 0.21870 0.24735
+ 35 0.0000 168.041512 x: 0.29506 1.00000 0.85420 0.87275 1.00000 0.89031 0.88652 0.74290 0.88333 1.00000 1.00000 0.88307 1.00000 0.76588 1.00000 1.00000 0.40775 0.66172 1.00000 0.71368 0.71290 0.62359 0.46506 1.00000 1.00000 0.66706 0.70715 0.69676 1.00000 1.00000 1.00000 0.42287 0.29073 0.39757 1.00000 0.21839 0.24112 0.21870 0.24735
+ 36 0.0000 168.041512 x: 0.29506 1.00000 0.85420 0.87275 1.00000 0.89031 0.88652 0.74290 0.88333 1.00000 1.00000 0.88307 1.00000 0.76588 1.00000 1.00000 0.40775 0.66172 1.00000 0.71368 0.71290 0.62359 0.46506 1.00000 1.00000 0.66706 0.70715 0.69676 1.00000 1.00000 1.00000 0.42287 0.29073 0.39757 1.00000 0.21839 0.24112 0.21870 0.24735
\ No newline at end of file
diff --git a/trunk/test/paml/unrooted_present/association/run_altree b/trunk/test/paml/unrooted_present/association/run_altree
new file mode 100755
index 0000000000000000000000000000000000000000..4fcc7dd0b9a24b362ca2ca5cf69eea3f28beab12
--- /dev/null
+++ b/trunk/test/paml/unrooted_present/association/run_altree
@@ -0,0 +1,12 @@
+#!/bin/sh -x
+
+# To obtain the apomorphy list corresponding to the tree whose topology
+# has been reconstructed by phyML
+# paml uses the baseml.ctl file as the parameter file
+baseml
+
+# To perform the association test
+# The outgroup must be sepcified for the association analysis (the tree
+# must be rooted). The outgroup is kept for the association test)
+../../../../altree -i rst -j nb_cas_control.txt -a -t SNP \
+--outgroup OUTG -p paml -r 1 -o 1_trio_ML.asso
diff --git a/trunk/test/paml/unrooted_present/association/trio2.phy b/trunk/test/paml/unrooted_present/association/trio2.phy
new file mode 100644
index 0000000000000000000000000000000000000000..f83ea2101250b0ca41d0886e3fb2f42d4d166d64
--- /dev/null
+++ b/trunk/test/paml/unrooted_present/association/trio2.phy
@@ -0,0 +1,37 @@
+ 36 10
+H019 GCGGCGCCCC
+H026 GCCCGCGGGC
+H004 GCGGCCGGGC
+H020 CGGGGCCCCG
+H034 GCGGGCCCCG
+H027 CCCCGGCCCG
+H023 CCCCGCGGGC
+H016 GCGCCGGGGC
+H002 CCCCCGGGGC
+H015 CGGGGCCCGC
+H006 CGGGGCGGGC
+H001 CGGGGCCCCC
+H010 CCGCGCCCCG
+H028 CGGGGCCGCC
+H024 GCGGCGGGCC
+H017 CCCCGCCCCC
+H009 CCCCGGGCGC
+H007 CCGCGCGGGC
+H033 GCGCGCCCCG
+H008 GCGGCGGGGC
+H029 GCGGGCCCCC
+H003 CCGCCCCCCC
+H035 CCGCGCGGGG
+H013 GCGGCGCCCG
+H032 GCGCCGCGGC
+H025 GCGGGCGGGC
+H021 GCCCCGGCGC
+H030 CCGGGCGGCC
+H031 GCGGCGGCGC
+H012 CCCCGGGGGC
+H005 GCGGCGGGGG
+H011 CCGCGCCCCC
+H022 GCGGCCCCCG
+H014 GCCCGCCCCC
+H018 CCGGGCCCCC
+OUTG CCGGGCGGGC
diff --git a/trunk/test/paml/unrooted_present/association/trio2.phy_phyml_tree.txt b/trunk/test/paml/unrooted_present/association/trio2.phy_phyml_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..7a9e40ebe0c855c5801a1f9f89eaf97c7a331a69
--- /dev/null
+++ b/trunk/test/paml/unrooted_present/association/trio2.phy_phyml_tree.txt
@@ -0,0 +1 @@
+(((((((((((((((((H010:0.000000,H033:0.114130):0.116459,(H027:0.274557,(H017:0.000004,H014:0.118913):0.000000):0.118933):0.000006,H011:0.000000):0.000000,H003:0.118921):0.116475,H018:0.000000):0.000000,(((H022:0.000000,(H013:0.000001,H019:0.111894):0.111900):0.111898,H034:0.000000):0.111896,H029:0.000000):0.114133):0.114148,H020:0.111888):0.000005,H001:0.000000):0.000002,H015:0.111898):0.111892,H028:0.000001):0.253376,H030:0.000000):0.109756,((H006:0.107699,((((((H031:0.107699,H005:0.105727):0.000000,(H032:0.109754,H016:0.000000):0.107699):0.000000,H008:0.000000):0.000000,H024:0.107699):0.107699,H004:0.000000):0.107700,H025:0.000000):0.107700):0.000000,OUTG:0.000000):0.000001):0.109752,H035:0.109755):0.000000,H007:0.000000):0.111901,(H026:0.111895,H023:0.000001):0.000000):0.111899,H012:0.000000):0.000000,(H021:0.260014,H002:0.000005):0.111874,H009:0.111896);
diff --git a/trunk/test/paml/unrooted_present/localisation/2base.t b/trunk/test/paml/unrooted_present/localisation/2base.t
new file mode 100644
index 0000000000000000000000000000000000000000..ee4343d429e24671d7f3694fecef86038b7702fd
--- /dev/null
+++ b/trunk/test/paml/unrooted_present/localisation/2base.t
@@ -0,0 +1,37 @@
+ 36
+H019
+H026 9.0000
+H004 nan nan
+H020 9.0000 9.0000 9.0000
+H034 nan 9.0000 nan nan
+H027 9.0000 9.0000 9.0000 nan nan
+H023 9.0000 nan nan 9.0000 9.0000 9.0000
+H016 nan nan nan 9.0000 9.0000 9.0000 nan
+H002 9.0000 nan nan 9.0000 9.0000 9.0000 nan nan
+H015 9.0000 9.0000 9.0000 nan nan 9.0000 nan 9.0000 9.0000
+H006 9.0000 nan nan nan 9.0000 9.0000 nan 9.0000 9.0000 nan
+H001 nan 9.0000 9.0000 nan nan 9.0000 9.0000 9.0000 9.0000 nan nan
+H010 9.0000 9.0000 9.0000 nan nan nan 9.0000 9.0000 9.0000 nan 9.0000 nan
+H028 9.0000 9.0000 nan nan nan 9.0000 9.0000 9.0000 9.0000 nan nan nan nan
+H024 nan nan nan 9.0000 nan 9.0000 9.0000 nan nan 9.0000 9.0000 9.0000 9.0000 nan
+H017 9.0000 9.0000 9.0000 nan 9.0000 nan nan 9.0000 9.0000 nan 9.0000 nan nan 9.0000 9.0000
+H009 9.0000 nan 9.0000 9.0000 9.0000 nan nan nan nan nan 9.0000 9.0000 9.0000 9.0000 9.0000 nan
+H007 9.0000 nan nan 9.0000 9.0000 9.0000 nan nan nan nan nan nan nan nan 9.0000 nan nan
+H033 nan 9.0000 9.0000 nan nan nan 9.0000 9.0000 9.0000 nan 9.0000 nan nan 9.0000 9.0000 nan 9.0000 nan
+H008 nan nan nan 9.0000 9.0000 9.0000 9.0000 nan nan 9.0000 nan 9.0000 9.0000 9.0000 nan 9.0000 9.0000 nan 9.0000
+H029 nan 9.0000 nan nan nan 9.0000 9.0000 9.0000 9.0000 nan 9.0000 nan nan nan nan nan 9.0000 nan nan 9.0000
+H003 nan 9.0000 nan 9.0000 nan 9.0000 9.0000 9.0000 9.0000 9.0000 9.0000 nan nan nan nan 9.0000 9.0000 9.0000 nan 9.0000 nan
+H035 9.0000 nan nan 9.0000 nan 9.0000 nan nan nan 9.0000 nan 9.0000 nan nan 9.0000 9.0000 nan nan nan 9.0000 9.0000 nan
+H013 nan 9.0000 nan nan nan nan 9.0000 9.0000 9.0000 9.0000 9.0000 9.0000 nan 9.0000 nan 9.0000 9.0000 9.0000 nan nan nan nan 9.0000
+H032 nan nan nan 9.0000 9.0000 9.0000 nan nan nan 9.0000 9.0000 9.0000 9.0000 9.0000 nan 9.0000 nan nan nan nan nan 9.0000 9.0000 nan
+H025 9.0000 nan nan 9.0000 nan 9.0000 nan nan 9.0000 nan nan 9.0000 9.0000 nan nan 9.0000 9.0000 nan 9.0000 nan nan 9.0000 nan 9.0000 nan
+H021 nan nan nan 9.0000 9.0000 9.0000 nan nan nan 9.0000 9.0000 9.0000 9.0000 9.0000 nan 9.0000 nan 9.0000 9.0000 nan 9.0000 9.0000 9.0000 nan nan 9.0000
+H030 9.0000 nan nan nan nan 9.0000 nan 9.0000 9.0000 nan nan nan nan nan nan nan 9.0000 nan 9.0000 nan nan nan nan 9.0000 9.0000 nan 9.0000
+H031 nan nan nan 9.0000 nan 9.0000 9.0000 nan nan 9.0000 9.0000 9.0000 9.0000 9.0000 nan 9.0000 nan 9.0000 9.0000 nan nan nan 9.0000 nan nan nan nan 9.0000
+H012 9.0000 nan 9.0000 9.0000 9.0000 nan nan nan nan 9.0000 nan 9.0000 9.0000 9.0000 9.0000 nan nan nan 9.0000 nan 9.0000 9.0000 nan 9.0000 nan nan nan nan 9.0000
+H005 nan 9.0000 nan 9.0000 9.0000 9.0000 9.0000 nan nan 9.0000 9.0000 9.0000 9.0000 9.0000 nan 9.0000 9.0000 9.0000 9.0000 nan 9.0000 9.0000 nan nan nan nan nan 9.0000 nan 9.0000
+H011 nan 9.0000 9.0000 nan nan nan nan 9.0000 9.0000 nan 9.0000 nan nan nan 9.0000 nan nan nan nan 9.0000 nan nan nan 9.0000 9.0000 9.0000 9.0000 nan 9.0000 9.0000 9.0000
+H022 nan 9.0000 nan nan nan 9.0000 9.0000 9.0000 9.0000 9.0000 9.0000 nan nan nan nan 9.0000 9.0000 9.0000 nan nan nan nan 9.0000 nan 9.0000 9.0000 9.0000 9.0000 nan 9.0000 nan 9.0000
+H014 nan nan 9.0000 9.0000 nan nan nan 9.0000 9.0000 9.0000 9.0000 nan nan 9.0000 9.0000 nan nan 9.0000 nan 9.0000 nan 9.0000 9.0000 9.0000 9.0000 9.0000 nan 9.0000 9.0000 9.0000 9.0000 nan nan
+H018 nan 9.0000 9.0000 nan nan nan 9.0000 9.0000 9.0000 nan nan nan nan nan 9.0000 nan 9.0000 nan nan 9.0000 nan nan 9.0000 nan 9.0000 nan 9.0000 nan 9.0000 9.0000 9.0000 nan nan nan
+OUTG 9.0000 nan nan 9.0000 9.0000 9.0000 nan nan nan nan nan nan 9.0000 nan nan 9.0000 nan nan 9.0000 nan nan 9.0000 nan 9.0000 9.0000 nan 9.0000 nan nan nan nan nan 9.0000 9.0000 nan
diff --git a/trunk/test/paml/unrooted_present/localisation/baseml.ctl b/trunk/test/paml/unrooted_present/localisation/baseml.ctl
new file mode 100644
index 0000000000000000000000000000000000000000..32cdc0d258e62b07629a8c5ebd6528a959f2d712
--- /dev/null
+++ b/trunk/test/paml/unrooted_present/localisation/baseml.ctl
@@ -0,0 +1,34 @@
+ seqfile = et_trio2.phy
+ treefile = trio2.phy_phyml_tree.txt
+
+ outfile = mlb * main result file
+ noisy = 9 * 0,1,2,3: how much rubbish on the screen
+ verbose = 1 * 1: detailed output, 0: concise output
+ runmode = 0 * 0: user tree; 1: semi-automatic; 2: automatic
+ * 3: StepwiseAddition; (4,5):PerturbationNNI
+
+ model = 7 * 0:JC69, 1:K80, 2:F81, 3:F84, 4:HKY85
+ * 5:T92, 6:TN93, 7:REV, 8:UNREST, 9:REVu; 10:UNRESTu
+
+ Mgene = 0 * 0:rates, 1:separate; 2:diff pi, 3:diff kapa, 4:all diff
+
+* ndata = 1
+ clock = 1 * 0:no clock, 1:clock; 2:local clock; 3:CombinedAnalysis
+ fix_kappa = 0 * 0: estimate kappa; 1: fix kappa at value below
+ kappa = 5 * initial or fixed kappa
+
+ fix_alpha = 1 * 0: estimate alpha; 1: fix alpha at value below
+ alpha = 0 * initial or fixed alpha, 0:infinity (constant rate)
+ Malpha = 0 * 1: different alpha's for genes, 0: one alpha
+ ncatG = 5 * # of categories in the dG, AdG, or nparK models of rates
+ nparK = 0 * rate-class models. 1:rK, 2:rK&fK, 3:rK&MK(1/K), 4:rK&MK
+
+ nhomo = 0 * 0 & 1: homogeneous, 2: kappa for branches, 3: N1, 4: N2
+ getSE = 0 * 0: don't want them, 1: want S.E.s of estimates
+ RateAncestor = 1 * (0,1,2): rates (alpha>0) or ancestral states
+
+ Small_Diff = 7e-6
+ cleandata = 0 * remove sites with ambiguity data (1:yes, 0:no)?
+* icode = 0 * (with RateAncestor=1. try "GC" in data,model=4,Mgene=4)
+* fix_blength = -1 * 0: ignore, -1: random, 1: initial, 2: fixed
+ method = 0 * 0: simultaneous; 1: one branch at a time
diff --git a/trunk/test/paml/unrooted_present/localisation/et_trio2.phy b/trunk/test/paml/unrooted_present/localisation/et_trio2.phy
new file mode 100644
index 0000000000000000000000000000000000000000..474e5c226efe11f06de60ca4af0b7d7d7abaad1c
--- /dev/null
+++ b/trunk/test/paml/unrooted_present/localisation/et_trio2.phy
@@ -0,0 +1,37 @@
+36 11
+H019 GCGGCGCCCC?
+H026 GCCCGCGGGCG
+H004 GCGGCCGGGCG
+H020 CGGGGCCCCGC
+H034 GCGGGCCCCGG
+H027 CCCCGGCCCG?
+H023 CCCCGCGGGCC
+H016 GCGCCGGGGC?
+H002 CCCCCGGGGCG
+H015 CGGGGCCCGCC
+H006 CGGGGCGGGC?
+H001 CGGGGCCCCCC
+H010 CCGCGCCCCGC
+H028 CGGGGCCGCCG
+H024 GCGGCGGGCCG
+H017 CCCCGCCCCCC
+H009 CCCCGGGCGCC
+H007 CCGCGCGGGCC
+H033 GCGCGCCCCGC
+H008 GCGGCGGGGCG
+H029 GCGGGCCCCCC
+H003 CCGCCCCCCCG
+H035 CCGCGCGGGGG
+H013 GCGGCGCCCGG
+H032 GCGCCGCGGCC
+H025 GCGGGCGGGC?
+H021 GCCCCGGCGCG
+H030 CCGGGCGGCC?
+H031 GCGGCGGCGCG
+H012 CCCCGGGGGC?
+H005 GCGGCGGGGG?
+H011 CCGCGCCCCCC
+H022 GCGGCCCCCGG
+H014 GCCCGCCCCC?
+H018 CCGGGCCCCC?
+OUTG CCGGGCGGGC?
diff --git a/trunk/test/paml/unrooted_present/localisation/lnf b/trunk/test/paml/unrooted_present/localisation/lnf
new file mode 100644
index 0000000000000000000000000000000000000000..a19901e10929506ed58198aad76d9fb5ff7d8daa
--- /dev/null
+++ b/trunk/test/paml/unrooted_present/localisation/lnf
@@ -0,0 +1,16 @@
+ -1 11 11
+
+
+ 1
+
+ 1 1 -21.3504627001 0.0000 GGGCGCCGCCCCCCGCCCGGGCCGGGGCGCGCGGCC
+ 2 1 -13.9253593463 0.0000 CCCGCCCCCGGGCGCCCCCCCCCCCCCCCCCCCCCC
+ 3 1 -12.1470280971 0.0001 GCGGGCCGCGGGGGGCCGGGGGGGGGCGGCGGGCGG
+ 4 1 -15.7042220229 0.0000 GCGGGCCCCGGGCGGCCCCGGCCGCGCGGCGCGCGG
+ 5 1 -16.1598302040 0.0000 CGCGGGGCCGGGGGCGGGGCGCGCCGCGCGCGCGGG
+ 6 1 -18.4691902274 0.0000 GCCCCGCGGCCCCCGCGCCGCCCGGCGCGGGCCCCC
+ 7 1 -12.2943243678 0.0001 CGGCCCGGGCGCCCGCGGCGCCGCCGGGGGGCCCCG
+ 8 1 -14.4446212953 0.0000 CGGCCCGGGCGCCGGCCGCGCCGCGGCGCGGCCCCG
+ 9 1 -13.8336215444 0.0000 CGGCCCGGGGGCCCCCGGCGCCGCGGGCGGGCCCCG
+ 10 1 -24.1672908333 0.0000 CCCGGGCCCCCCGCCCCCGCCCGGCCCCCCGCGCCC
+ 11 1 -18.8775789219 0.0000 ?GGCG?C?GC?CCGGCCCCGCGGGC?G?G??CG???
\ No newline at end of file
diff --git a/trunk/test/paml/unrooted_present/localisation/mlb b/trunk/test/paml/unrooted_present/localisation/mlb
new file mode 100644
index 0000000000000000000000000000000000000000..2800248b60cac95b874b81fc428af2d247f9cb90
--- /dev/null
+++ b/trunk/test/paml/unrooted_present/localisation/mlb
@@ -0,0 +1,194 @@
+
+seed used = 30455833
+
+H019 GCGGCGCCCC ?
+H026 GCCCGCGGGC G
+H004 GCGGCCGGGC G
+H020 CGGGGCCCCG C
+H034 GCGGGCCCCG G
+H027 CCCCGGCCCG ?
+H023 CCCCGCGGGC C
+H016 GCGCCGGGGC ?
+H002 CCCCCGGGGC G
+H015 CGGGGCCCGC C
+H006 CGGGGCGGGC ?
+H001 CGGGGCCCCC C
+H010 CCGCGCCCCG C
+H028 CGGGGCCGCC G
+H024 GCGGCGGGCC G
+H017 CCCCGCCCCC C
+H009 CCCCGGGCGC C
+H007 CCGCGCGGGC C
+H033 GCGCGCCCCG C
+H008 GCGGCGGGGC G
+H029 GCGGGCCCCC C
+H003 CCGCCCCCCC G
+H035 CCGCGCGGGG G
+H013 GCGGCGCCCG G
+H032 GCGCCGCGGC C
+H025 GCGGGCGGGC ?
+H021 GCCCCGGCGC G
+H030 CCGGGCGGCC ?
+H031 GCGGCGGCGC G
+H012 CCCCGGGGGC ?
+H005 GCGGCGGGGG ?
+H011 CCGCGCCCCC C
+H022 GCGGCCCCCG G
+H014 GCCCGCCCCC ?
+H018 CCGGGCCCCC ?
+OUTG CCGGGCGGGC ?
+
+
+BASEML (in paml 3.14, January 2004) et_trio2.phy REV Global clock
+ns = 36 ls = 11
+# site patterns = 11
+ 1 1 1 1 1 1 1 1 1 1 1
+
+H019 GCGGCGCCCC ?
+H026 ..CCGCGGG. G
+H004 .....CGGG. G
+H020 CG..GC...G C
+H034 ....GC...G G
+H027 C.CCG....G ?
+H023 C.CCGCGGG. C
+H016 ...C..GGG. ?
+H002 C.CC..GGG. G
+H015 CG..GC..G. C
+H006 CG..GCGGG. ?
+H001 CG..GC.... C
+H010 C..CGC...G C
+H028 CG..GC.G.. G
+H024 ......GG.. G
+H017 C.CCGC.... C
+H009 C.CCG.G.G. C
+H007 C..CGCGGG. C
+H033 ...CGC...G C
+H008 ......GGG. G
+H029 ....GC.... C
+H003 C..C.C.... G
+H035 C..CGCGGGG G
+H013 .........G G
+H032 ...C...GG. C
+H025 ....GCGGG. ?
+H021 ..CC..G.G. G
+H030 C...GCGG.. ?
+H031 ......G.G. G
+H012 C.CCG.GGG. ?
+H005 ......GGGG ?
+H011 C..CGC.... C
+H022 .....C...G G
+H014 ..CCGC.... ?
+H018 C...GC.... ?
+OUTG C...GCGGG. ?
+
+
+
+
+Frequencies..
+ T C A G
+H019 0.0000 0.6000 0.0000 0.4000
+H026 0.0000 0.4545 0.0000 0.5455
+H004 0.0000 0.3636 0.0000 0.6364
+H020 0.0000 0.5455 0.0000 0.4545
+H034 0.0000 0.4545 0.0000 0.5455
+H027 0.0000 0.7000 0.0000 0.3000
+H023 0.0000 0.6364 0.0000 0.3636
+H016 0.0000 0.4000 0.0000 0.6000
+H002 0.0000 0.5455 0.0000 0.4545
+H015 0.0000 0.5455 0.0000 0.4545
+H006 0.0000 0.3000 0.0000 0.7000
+H001 0.0000 0.6364 0.0000 0.3636
+H010 0.0000 0.7273 0.0000 0.2727
+H028 0.0000 0.4545 0.0000 0.5455
+H024 0.0000 0.3636 0.0000 0.6364
+H017 0.0000 0.9091 0.0000 0.0909
+H009 0.0000 0.6364 0.0000 0.3636
+H007 0.0000 0.5455 0.0000 0.4545
+H033 0.0000 0.6364 0.0000 0.3636
+H008 0.0000 0.2727 0.0000 0.7273
+H029 0.0000 0.6364 0.0000 0.3636
+H003 0.0000 0.8182 0.0000 0.1818
+H035 0.0000 0.3636 0.0000 0.6364
+H013 0.0000 0.4545 0.0000 0.5455
+H032 0.0000 0.5455 0.0000 0.4545
+H025 0.0000 0.3000 0.0000 0.7000
+H021 0.0000 0.5455 0.0000 0.4545
+H030 0.0000 0.5000 0.0000 0.5000
+H031 0.0000 0.3636 0.0000 0.6364
+H012 0.0000 0.5000 0.0000 0.5000
+H005 0.0000 0.2000 0.0000 0.8000
+H011 0.0000 0.8182 0.0000 0.1818
+H022 0.0000 0.5455 0.0000 0.4545
+H014 0.0000 0.8000 0.0000 0.2000
+H018 0.0000 0.7000 0.0000 0.3000
+OUTG 0.0000 0.4000 0.0000 0.6000
+
+Average 0.0000 0.5351 0.0000 0.4649
+(Ambiguity characters are used to calculate freqs.)
+
+
+# constant sites: 0 (0.00%)
+Distances: TN93 (kappa) (alpha set at 0.00)
+This matrix is not used in later m.l. analysis.
+
+(Pairwise deletion.)
+H019
+H026 9.0000( 0.0000)
+H004 nan(999.0000) nan(999.0000)
+H020 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000)
+H034 nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000)
+H027 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000)
+H023 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000)
+H016 nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000)
+H002 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000)
+H015 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000)
+H006 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000)
+H001 nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000)
+H010 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000)
+H028 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000)
+H024 nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000)
+H017 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000)
+H009 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000)
+H007 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000)
+H033 nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000)
+H008 nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000)
+H029 nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000)
+H003 nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000)
+H035 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000)
+H013 nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000)
+H032 nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000)
+H025 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000)
+H021 nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000)
+H030 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000)
+H031 nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000)
+H012 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000)
+H005 nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000)
+H011 nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000)
+H022 nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000)
+H014 nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000)
+H018 nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000)
+OUTG 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000) 9.0000(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) nan(999.0000) 9.0000(999.0000) 9.0000(999.0000) nan(999.0000)
+
+TREE # 1: (((((((((((((((((13, 19), (6, (16, 34))), 32), 22), 35), (((33, (24, 1)), 5), 21)), 4), 12), 10), 14), 28), ((11, ((((((29, 31), (25, 8)), 20), 15), 3), 26)), 36)), 23), 18), (2, 7)), 30), (27, 9), 17); MP score: -1.00
+lnL(ntime: 34 np: 39): -181.373530 +0.000000
+ 37..38 38..39 39..40 40..41 41..42 42..43 43..44 44..45 45..46 46..47 47..48 48..49 49..50 50..51 51..52 52..53 53..13 53..19 52..54 54..6 54..55 55..16 55..34 51..32 50..22 49..35 48..56 56..57 57..58 58..33 58..59 59..24 59..1 57..5 56..21 47..4 46..12 45..10 44..14 43..28 42..60 60..61 61..11 61..62 62..63 63..64 64..65 65..66 66..67 67..29 67..31 66..68 68..25 68..8 65..20 64..15 63..3 62..26 60..36 41..23 40..18 39..69 69..2 69..7 38..30 37..70 70..27 70..9 37..17
+ 0.36618 0.36618 0.31657 0.27571 0.27571 0.24541 0.22012 0.17854 0.14232 0.14232 0.14232 0.13022 0.13022 0.10183 0.10183 0.10183 0.03847 0.06635 0.06635 0.10198 0.05186 0.03289 0.01540 0.24010 0.24010 0.15534 0.10849 0.08025 0.08025 0.08025 0.08025 0.03330 0.16213 0.11689 1.00000 0.21839 0.24112 0.21870 0.24735
+
+tree length = 5.72033
+
+(((((((((((((((((H010, H033), (H027, (H017, H014))), H011), H003), H018), (((H022, (H013, H019)), H034), H029)), H020), H001), H015), H028), H030), ((H006, ((((((H031, H005), (H032, H016)), H008), H024), H004), H025)), OUTG)), H035), H007), (H026, H023)), H012), (H021, H002), H009);
+
+(((((((((((((((((H010: 0.038473, H033: 0.038473): 0.063358, (H027: 0.066349, (H017: 0.066348, H014: 0.066348): 0.000001): 0.035483): 0.000000, H011: 0.101831): 0.000000, H003: 0.101831): 0.028393, H018: 0.130224): 0.000000, (((H022: 0.032888, (H013: 0.015402, H019: 0.015402): 0.017485): 0.018969, H034: 0.051857): 0.050124, H029: 0.101981): 0.028243): 0.012091, H020: 0.142315): 0.000000, H001: 0.142315): 0.000000, H015: 0.142316): 0.036222, H028: 0.178537): 0.041581, H030: 0.220119): 0.025287, ((H006: 0.240097, ((((((H031: 0.080251, H005: 0.080251): 0.000000, (H032: 0.033304, H016: 0.033304): 0.046948): 0.000000, H008: 0.080251): 0.000000, H024: 0.080251): 0.028235, H004: 0.108486): 0.046856, H025: 0.155343): 0.084754): 0.000000, OUTG: 0.240097): 0.005308): 0.030304, H035: 0.275709): 0.000000, H007: 0.275709): 0.040862, (H026: 0.162133, H023: 0.162133): 0.154438): 0.049611, H012: 0.366183): 0.000000, (H021: 0.116893, H002: 0.116893): 0.249290, H009: 0.366183);
+
+Detailed output identifying parameters
+
+Parameters in the rate matrix (REV) (Yang 1994 J Mol Evol 39:105-111):
+
+Rate parameters: 1.00000 0.21839 0.24112 0.21870 0.24735
+Base frequencies: 0.00000 0.53506 0.00000 0.46494
+Rate matrix Q, Average Ts/Tv = 0.0000
+ -5.258684 4.347769 0.000000 0.910915
+ 0.000000 -0.934466 0.000000 0.934466
+ 0.000000 0.950863 -4.728782 3.777919
+ 0.000000 1.075419 0.000000 -1.075419
+
diff --git a/trunk/test/paml/unrooted_present/localisation/nb_cas_controls.txt b/trunk/test/paml/unrooted_present/localisation/nb_cas_controls.txt
new file mode 100644
index 0000000000000000000000000000000000000000..e1584a30f50f647fc78f0643199ed6a4978ed99c
--- /dev/null
+++ b/trunk/test/paml/unrooted_present/localisation/nb_cas_controls.txt
@@ -0,0 +1,36 @@
+H019 m003 c003
+H026 m001 c000
+H004 m011 c002
+H020 m005 c009
+H034 m001 c000
+H027 m001 c002
+H023 m001 c005
+H016 m002 c002
+H002 m009 c003
+H015 m002 c006
+H006 m023 c019
+H001 m024 c039
+H010 m001 c003
+H028 m004 c000
+H024 m001 c000
+H017 m000 c008
+H009 m005 c010
+H007 m025 c036
+H033 m000 c001
+H008 m028 c019
+H029 m001 c003
+H003 m002 c000
+H035 m001 c000
+H013 m015 c005
+H032 m000 c001
+H025 m002 c003
+H021 m011 c002
+H030 m001 c001
+H031 m001 c000
+H012 m001 c002
+H005 m002 c002
+H011 m003 c008
+H022 m009 c001
+H014 m002 c003
+H018 m002 c002
+OUTG m004 c004
diff --git a/trunk/test/paml/unrooted_present/localisation/rst b/trunk/test/paml/unrooted_present/localisation/rst
new file mode 100644
index 0000000000000000000000000000000000000000..694fc242cd7b012ae1acb393b31ef0a241a4a5ad
--- /dev/null
+++ b/trunk/test/paml/unrooted_present/localisation/rst
@@ -0,0 +1,475 @@
+Supplemental results for BASEML
+
+seqf: et_trio2.phy
+treef: trio2.phy_phyml_tree.txt
+
+
+TREE # 1
+
+Ancestral reconstruction by BASEML.
+
+(((((((((((((((((H010: 0.038473, H033: 0.038473): 0.063358, (H027: 0.066349, (H017: 0.066348, H014: 0.066348): 0.000001): 0.035483): 0.000000, H011: 0.101831): 0.000000, H003: 0.101831): 0.028393, H018: 0.130224): 0.000000, (((H022: 0.032888, (H013: 0.015402, H019: 0.015402): 0.017485): 0.018969, H034: 0.051857): 0.050124, H029: 0.101981): 0.028243): 0.012091, H020: 0.142315): 0.000000, H001: 0.142315): 0.000000, H015: 0.142316): 0.036222, H028: 0.178537): 0.041581, H030: 0.220119): 0.025287, ((H006: 0.240097, ((((((H031: 0.080251, H005: 0.080251): 0.000000, (H032: 0.033304, H016: 0.033304): 0.046948): 0.000000, H008: 0.080251): 0.000000, H024: 0.080251): 0.028235, H004: 0.108486): 0.046856, H025: 0.155343): 0.084754): 0.000000, OUTG: 0.240097): 0.005308): 0.030304, H035: 0.275709): 0.000000, H007: 0.275709): 0.040862, (H026: 0.162133, H023: 0.162133): 0.154438): 0.049611, H012: 0.366183): 0.000000, (H021: 0.116893, H002: 0.116893): 0.249290, H009: 0.366183);
+
+(((((((((((((((((13, 19), (6, (16, 34))), 32), 22), 35), (((33, (24, 1)), 5), 21)), 4), 12), 10), 14), 28), ((11, ((((((29, 31), (25, 8)), 20), 15), 3), 26)), 36)), 23), 18), (2, 7)), 30), (27, 9), 17);
+
+ 37..38 38..39 39..40 40..41 41..42 42..43 43..44 44..45 45..46 46..47 47..48 48..49 49..50 50..51 51..52 52..53 53..13 53..19 52..54 54..6 54..55 55..16 55..34 51..32 50..22 49..35 48..56 56..57 57..58 58..33 58..59 59..24 59..1 57..5 56..21 47..4 46..12 45..10 44..14 43..28 42..60 60..61 61..11 61..62 62..63 63..64 64..65 65..66 66..67 67..29 67..31 66..68 68..25 68..8 65..20 64..15 63..3 62..26 60..36 41..23 40..18 39..69 69..2 69..7 38..30 37..70 70..27 70..9 37..17
+
+tree with node labels for Rod Page's TreeView
+(((((((((((((((((13_H010: 0.038473, 19_H033: 0.038473) 53 : 0.063358, (6_H027: 0.066349, (16_H017: 0.066348, 34_H014: 0.066348) 55 : 0.000001) 54 : 0.035483) 52 : 0.000000, 32_H011: 0.101831) 51 : 0.000000, 22_H003: 0.101831) 50 : 0.028393, 35_H018: 0.130224) 49 : 0.000000, (((33_H022: 0.032888, (24_H013: 0.015402, 1_H019: 0.015402) 59 : 0.017485) 58 : 0.018969, 5_H034: 0.051857) 57 : 0.050124, 21_H029: 0.101981) 56 : 0.028243) 48 : 0.012091, 4_H020: 0.142315) 47 : 0.000000, 12_H001: 0.142315) 46 : 0.000000, 10_H015: 0.142316) 45 : 0.036222, 14_H028: 0.178537) 44 : 0.041581, 28_H030: 0.220119) 43 : 0.025287, ((11_H006: 0.240097, ((((((29_H031: 0.080251, 31_H005: 0.080251) 67 : 0.000000, (25_H032: 0.033304, 8_H016: 0.033304) 68 : 0.046948) 66 : 0.000000, 20_H008: 0.080251) 65 : 0.000000, 15_H024: 0.080251) 64 : 0.028235, 3_H004: 0.108486) 63 : 0.046856, 26_H025: 0.155343) 62 : 0.084754) 61 : 0.000000, 36_OUTG: 0.240097) 60 : 0.005308) 42 : 0.030304, 23_H035: 0.275709) 41 : 0.000000, 18_H007: 0.275709) 40 : 0.040862, (2_H026: 0.162133, 7_H023: 0.162133) 69 : 0.154438) 39 : 0.049611, 30_H012: 0.366183) 38 : 0.000000, (27_H021: 0.116893, 9_H002: 0.116893) 70 : 0.249290, 17_H009: 0.366183) 37 ;
+
+Nodes 37 to 70 are ancestral
+Unreliable at sites with alignment gaps
+
+(1) Marginal reconstruction of ancestral sequences (eqn. 4 in Yang et al. 1995 Genetics 141:1641-1650).
+
+
+Prob of best character at each node, listed by site
+
+Site Freq Data:
+
+ 1 1 GGGCGCCGCCCCCCGCCCGGGCCGGGGCGCGCGGCC: C(0.987) C(0.987) C(0.991) C(0.999) C(0.999) C(0.999) C(0.999) C(1.000) C(1.000) C(1.000) C(1.000) C(0.998) C(0.998) C(1.000) C(1.000) C(1.000) C(0.937) C(0.997) C(0.997) G(0.852) G(0.997) G(1.000) G(1.000) C(0.995) C(0.995) G(0.921) G(0.995) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) C(0.856) C(0.789)
+ 2 1 CCCGCCCCCGGGCGCCCCCCCCCCCCCCCCCCCCCC: C(0.998) C(0.998) C(0.999) C(0.998) C(0.998) C(0.989) C(0.923) G(0.557) G(0.623) G(0.623) G(0.623) C(0.993) C(0.993) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(0.999) C(1.000) C(1.000) C(1.000) C(0.989) C(0.989) C(0.998) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(0.996) C(0.996)
+ 3 1 GCGGGCCGCGGGGGGCCGGGGGGGGGCGGCGGGCGG: C(0.889) C(0.889) C(0.730) G(0.966) G(0.966) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) C(0.991) C(0.991) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(0.999) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) C(0.957) C(0.991)
+ 4 1 GCGGGCCCCGGGCGGCCCCGGCCGCGCGGCGCGCGG: C(0.983) C(0.983) C(0.963) C(0.871) C(0.871) G(0.991) G(0.997) G(0.999) G(1.000) G(1.000) G(1.000) G(0.998) G(0.998) C(0.999) C(0.999) C(0.999) C(1.000) C(1.000) C(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(0.996) G(0.996) G(0.999) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) C(0.975) C(0.991) C(0.996)
+ 5 1 CGCGGGGCCGGGGGCGGGGCGCGCCGCGCGCGCGGG: G(0.975) G(0.975) G(0.996) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(0.994) G(0.884) C(0.972) C(1.000) G(0.999) G(0.999) G(0.801) C(0.948) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) G(0.996) C(0.947)
+ 6 1 GCCCCGCGGCCCCCGCGCCGCCCGGCGCGGGCCCCC: G(0.662) G(0.662) C(0.906) C(0.994) C(0.994) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(0.997) C(0.997) C(1.000) C(0.994) C(0.958) G(0.988) C(0.999) C(0.999) C(0.954) C(0.802) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) C(0.982) G(0.981)
+ 7 1 CGGCCCGGGCGCCCGCGGCGCCGCCGGGGGGCCCCG: G(0.998) G(0.998) G(0.999) G(1.000) G(1.000) G(0.999) G(0.901) C(0.874) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) G(0.999) G(0.999) G(0.999) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(0.958) G(0.996) G(0.997)
+ 8 1 CGGCCCGGGCGCCGGCCGCGCCGCGGCGCGGCCCCG: G(0.951) G(0.951) G(0.993) G(1.000) G(1.000) G(1.000) G(0.980) G(0.822) C(0.999) C(0.999) C(0.999) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) G(1.000) G(1.000) G(0.999) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(0.995) G(0.779)
+ 9 1 CGGCCCGGGGGCCCCCGGCGCCGCGGGCGGGCCCCG: G(0.998) G(0.998) G(0.999) G(0.999) G(0.999) G(0.991) C(0.697) C(0.955) C(0.998) C(0.998) C(0.998) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) G(0.996) G(0.996) G(0.999) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(1.000) G(0.996) G(0.997)
+ 10 1 CCCGGGCCCCCCGCCCCCGCCCGGCCCCCCGCGCCC: C(0.998) C(0.998) C(0.999) C(0.998) C(0.998) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(0.999) C(0.999) C(0.999) G(0.978) C(0.997) C(0.997) C(0.945) G(0.958) G(0.974) G(0.959) C(1.000) C(1.000) C(0.999) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(1.000) C(0.996) C(0.996)
+ 11 1 ?GGCG?C?GC?CCGGCCCCGCGGGC?G?G??CG???: G(0.743) G(0.743) G(0.753) G(0.760) G(0.760) G(0.764) G(0.696) G(0.587) C(0.995) C(0.995) C(0.995) C(0.995) C(0.995) C(0.999) C(0.999) C(0.999) C(1.000) C(0.997) C(0.997) C(0.939) G(0.982) G(0.999) G(0.999) G(0.772) G(0.772) G(0.911) G(0.994) G(0.999) G(0.999) G(0.999) G(0.999) C(0.587) G(0.690) G(0.985)
+
+Summary of changes along branches.
+Check root for directions of change.
+
+Branch 1: 37..38
+
+
+
+Branch 2: 38..39
+
+ 6 G 0.662 -> C 0.906
+
+
+Branch 3: 39..40
+
+ 3 C 0.730 -> G 0.966
+
+
+Branch 4: 40..41
+
+
+
+Branch 5: 41..42
+
+ 4 C 0.871 -> G 0.991
+
+
+Branch 6: 42..43
+
+ 9 G 0.991 -> C 0.697
+
+
+Branch 7: 43..44
+
+ 2 C 0.923 -> G 0.557
+ 7 G 0.901 -> C 0.874
+
+
+Branch 8: 44..45
+
+ 8 G 0.822 -> C 0.999
+ 11 G 0.587 -> C 0.995
+
+
+Branch 9: 45..46
+
+
+
+Branch 10: 46..47
+
+
+
+Branch 11: 47..48
+
+ 2 G 0.623 -> C 0.993
+
+
+Branch 12: 48..49
+
+
+
+Branch 13: 49..50
+
+ 4 G 0.998 -> C 0.999
+
+
+Branch 14: 50..51
+
+
+
+Branch 15: 51..52
+
+
+
+Branch 16: 52..53
+
+ 10 C 0.999 -> G 0.978
+
+
+Branch 17: 53..13 (H010)
+
+
+
+Branch 18: 53..19 (H033)
+
+ 1 C 0.937 -> G
+
+
+Branch 19: 52..54
+
+ 3 G 1.000 -> C 0.991
+
+
+Branch 20: 54..6 (H027)
+
+ 6 C 0.997 -> G
+ 10 C 0.997 -> G
+ 11 C 0.997 -> ?
+
+
+Branch 21: 54..55
+
+
+
+Branch 22: 55..16 (H017)
+
+
+
+Branch 23: 55..34 (H014)
+
+ 1 C 0.997 -> G
+ 11 C 0.997 -> ?
+
+
+Branch 24: 51..32 (H011)
+
+
+
+Branch 25: 50..22 (H003)
+
+ 5 G 1.000 -> C
+ 11 C 0.999 -> G
+
+
+Branch 26: 49..35 (H018)
+
+ 11 C 0.995 -> ?
+
+
+Branch 27: 48..56
+
+ 1 C 0.998 -> G 0.852
+
+
+Branch 28: 56..57
+
+ 10 C 0.945 -> G 0.958
+ 11 C 0.939 -> G 0.982
+
+
+Branch 29: 57..58
+
+ 5 G 0.884 -> C 0.972
+
+
+Branch 30: 58..33 (H022)
+
+
+
+Branch 31: 58..59
+
+ 6 C 0.958 -> G 0.988
+
+
+Branch 32: 59..24 (H013)
+
+
+
+Branch 33: 59..1 (H019)
+
+ 10 G 0.959 -> C
+ 11 G 0.999 -> ?
+
+
+Branch 34: 57..5 (H034)
+
+
+
+Branch 35: 56..21 (H029)
+
+
+
+Branch 36: 47..4 (H020)
+
+ 10 C 1.000 -> G
+
+
+Branch 37: 46..12 (H001)
+
+
+
+Branch 38: 45..10 (H015)
+
+ 9 C 0.998 -> G
+
+
+Branch 39: 44..14 (H028)
+
+
+
+Branch 40: 43..28 (H030)
+
+ 11 G 0.696 -> ?
+
+
+Branch 41: 42..60
+
+
+
+Branch 42: 60..61
+
+
+
+Branch 43: 61..11 (H006)
+
+ 2 C 0.989 -> G
+ 11 G 0.772 -> ?
+
+
+Branch 44: 61..62
+
+ 1 C 0.995 -> G 0.921
+
+
+Branch 45: 62..63
+
+ 5 G 0.801 -> C 0.948
+
+
+Branch 46: 63..64
+
+ 6 C 0.802 -> G 1.000
+
+
+Branch 47: 64..65
+
+
+
+Branch 48: 65..66
+
+
+
+Branch 49: 66..67
+
+
+
+Branch 50: 67..29 (H031)
+
+ 8 G 1.000 -> C
+
+
+Branch 51: 67..31 (H005)
+
+ 10 C 1.000 -> G
+ 11 G 0.999 -> ?
+
+
+Branch 52: 66..68
+
+ 4 G 1.000 -> C 0.975
+ 11 G 0.999 -> C 0.587
+
+
+Branch 53: 68..25 (H032)
+
+ 7 G 0.958 -> C
+
+
+Branch 54: 68..8 (H016)
+
+ 11 C 0.587 -> ?
+
+
+Branch 55: 65..20 (H008)
+
+
+
+Branch 56: 64..15 (H024)
+
+ 9 G 1.000 -> C
+
+
+Branch 57: 63..3 (H004)
+
+
+
+Branch 58: 62..26 (H025)
+
+ 11 G 0.911 -> ?
+
+
+Branch 59: 60..36 (OUTG)
+
+ 11 G 0.772 -> ?
+
+
+Branch 60: 41..23 (H035)
+
+ 10 C 0.998 -> G
+
+
+Branch 61: 40..18 (H007)
+
+ 11 G 0.760 -> C
+
+
+Branch 62: 39..69
+
+
+
+Branch 63: 69..2 (H026)
+
+ 1 C 0.856 -> G
+
+
+Branch 64: 69..7 (H023)
+
+ 11 G 0.690 -> C
+
+
+Branch 65: 38..30 (H012)
+
+ 11 G 0.743 -> ?
+
+
+Branch 66: 37..70
+
+ 5 G 0.975 -> C 0.947
+
+
+Branch 67: 70..27 (H021)
+
+ 1 C 0.789 -> G
+ 8 G 0.779 -> C
+
+
+Branch 68: 70..9 (H002)
+
+
+
+Branch 69: 37..17 (H009)
+
+ 8 G 0.951 -> C
+ 11 G 0.743 -> C
+
+
+
+
+List of extant and reconstructed sequences
+
+H019 GCGGCGCCCC ?
+H026 GCCCGCGGGC G
+H004 GCGGCCGGGC G
+H020 CGGGGCCCCG C
+H034 GCGGGCCCCG G
+H027 CCCCGGCCCG ?
+H023 CCCCGCGGGC C
+H016 GCGCCGGGGC ?
+H002 CCCCCGGGGC G
+H015 CGGGGCCCGC C
+H006 CGGGGCGGGC ?
+H001 CGGGGCCCCC C
+H010 CCGCGCCCCG C
+H028 CGGGGCCGCC G
+H024 GCGGCGGGCC G
+H017 CCCCGCCCCC C
+H009 CCCCGGGCGC C
+H007 CCGCGCGGGC C
+H033 GCGCGCCCCG C
+H008 GCGGCGGGGC G
+H029 GCGGGCCCCC C
+H003 CCGCCCCCCC G
+H035 CCGCGCGGGG G
+H013 GCGGCGCCCG G
+H032 GCGCCGCGGC C
+H025 GCGGGCGGGC ?
+H021 GCCCCGGCGC G
+H030 CCGGGCGGCC ?
+H031 GCGGCGGCGC G
+H012 CCCCGGGGGC ?
+H005 GCGGCGGGGG ?
+H011 CCGCGCCCCC C
+H022 GCGGCCCCCG G
+H014 GCCCGCCCCC ?
+H018 CCGGGCCCCC ?
+OUTG CCGGGCGGGC ?
+node #37 CCCCGGGGGC G
+node #38 CCCCGGGGGC G
+node #39 CCCCGCGGGC G
+node #40 CCGCGCGGGC G
+node #41 CCGCGCGGGC G
+node #42 CCGGGCGGGC G
+node #43 CCGGGCGGCC G
+node #44 CGGGGCCGCC G
+node #45 CGGGGCCCCC C
+node #46 CGGGGCCCCC C
+node #47 CGGGGCCCCC C
+node #48 CCGGGCCCCC C
+node #49 CCGGGCCCCC C
+node #50 CCGCGCCCCC C
+node #51 CCGCGCCCCC C
+node #52 CCGCGCCCCC C
+node #53 CCGCGCCCCG C
+node #54 CCCCGCCCCC C
+node #55 CCCCGCCCCC C
+node #56 GCGGGCCCCC C
+node #57 GCGGGCCCCG G
+node #58 GCGGCCCCCG G
+node #59 GCGGCGCCCG G
+node #60 CCGGGCGGGC G
+node #61 CCGGGCGGGC G
+node #62 GCGGGCGGGC G
+node #63 GCGGCCGGGC G
+node #64 GCGGCGGGGC G
+node #65 GCGGCGGGGC G
+node #66 GCGGCGGGGC G
+node #67 GCGGCGGGGC G
+node #68 GCGCCGGGGC C
+node #69 CCCCGCGGGC G
+node #70 CCCCCGGGGC G
+
+
+Overall accuracy of the 34 ancestral sequences:
+ 0.92564 0.92564 0.93903 0.96221 0.96221 0.97558 0.92659 0.89023 0.96490 0.96490 0.96490 0.99854 0.99854 0.99966 0.99966 0.99966 0.99221 0.99808 0.99808 0.97517 0.98317 0.99119 0.99506 0.97690 0.97690 0.96189 0.97620 0.99989 0.99989 0.99989 0.99989 0.95631 0.94999 0.95031
+for a site.
+
+ 0.39024 0.39024 0.46884 0.63139 0.63139 0.73932 0.39368 0.22377 0.61720 0.61720 0.61720 0.98406 0.98406 0.99626 0.99627 0.99626 0.91570 0.97905 0.97905 0.74913 0.82403 0.90618 0.94621 0.75203 0.75203 0.63713 0.75137 0.99876 0.99876 0.99876 0.99876 0.54788 0.53582 0.54717
+for the sequence.
+
+
+Counts of changes at sites
+
+ 1 CG CG CG CG CG CG (6)
+ 2 CG CG GC (3)
+ 3 CG GC (2)
+ 4 CG GC GC (3)
+ 5 GC GC GC GC (4)
+ 6 CG GC CG CG (4)
+ 7 GC GC (2)
+ 8 GC GC GC GC (4)
+ 9 CG GC GC (3)
+ 10 GC CG CG CG CG CG CG (7)
+ 11 G? C? GC C? G? GC GC CG G? G? G? G? C? C? G? GC CG GC (18)
+
+
diff --git a/trunk/test/paml/unrooted_present/localisation/rst1 b/trunk/test/paml/unrooted_present/localisation/rst1
new file mode 100644
index 0000000000000000000000000000000000000000..8b137891791fe96927ad78e64b0aad7bded08bdc
--- /dev/null
+++ b/trunk/test/paml/unrooted_present/localisation/rst1
@@ -0,0 +1 @@
+
diff --git a/trunk/test/paml/unrooted_present/localisation/rub b/trunk/test/paml/unrooted_present/localisation/rub
new file mode 100644
index 0000000000000000000000000000000000000000..838e29b92c160235a04df60be924247a05a45fe9
--- /dev/null
+++ b/trunk/test/paml/unrooted_present/localisation/rub
@@ -0,0 +1,49 @@
+
+
+TREE # 1
+
+ 1 133.7663 203.681194 x: 0.83116 0.87035 1.00000 0.97995 0.85619 0.82543 0.68744 0.74857 0.72267 0.87796 0.83042 0.63684 0.56893 0.85791 0.85122 0.86070 0.77600 0.50342 0.42576 0.82258 0.69057 0.53088 0.77194 0.72684 0.73919 0.79019 0.83061 0.88554 0.51176 0.47183 0.87488 0.77383 0.54118 0.68123 1.00000 0.21839 0.24112 0.21870 0.24735
+ 2 35.6176 193.653085 x: 0.69726 0.77831 0.93502 0.95305 0.84692 0.82719 0.75733 0.82699 0.82083 1.00000 0.98416 0.79832 0.70037 0.88351 0.91141 0.90317 0.75464 0.54565 0.44497 0.81456 0.66194 0.53782 0.74169 0.68913 0.73650 0.76466 0.80333 0.87677 0.57571 0.57004 0.89442 0.74146 0.51264 0.65788 1.00000 0.21839 0.24112 0.21870 0.24735
+ 3 25.5072 192.682883 x: 0.67193 0.76986 0.93158 0.95406 0.85693 0.83489 0.75270 0.81814 0.81092 1.00000 1.00000 0.80535 0.71260 0.87890 0.91854 0.91024 0.74815 0.55229 0.44919 0.80898 0.65429 0.53779 0.73580 0.69962 0.75284 0.76922 0.80358 0.87431 0.59370 0.59149 0.90014 0.73440 0.50804 0.65054 1.00000 0.21839 0.24112 0.21870 0.24735
+ 4 12.3656 189.186188 x: 0.53226 0.84184 0.97682 0.90607 0.91060 0.79789 0.79001 0.84806 0.82990 1.00000 1.00000 0.74883 0.79913 0.83987 1.00000 0.99193 0.66943 0.58992 0.49982 0.81296 0.62403 0.56117 0.68796 0.72790 0.81308 0.71021 0.73510 0.81993 0.66719 0.68915 0.95245 0.68969 0.50634 0.54431 1.00000 0.21839 0.24112 0.21870 0.24735
+ 5 16.7075 188.951289 x: 0.52886 0.84998 0.97690 0.89972 0.91345 0.79591 0.79041 0.84604 0.82915 1.00000 1.00000 0.75470 0.80576 0.84013 1.00000 1.00000 0.66245 0.59098 0.50471 0.81514 0.62343 0.56369 0.68500 0.72884 0.81640 0.70857 0.73576 0.82182 0.67150 0.69403 0.95698 0.68750 0.50768 0.53289 1.00000 0.21839 0.24112 0.21870 0.24735
+ 6 14.1030 187.455217 x: 0.47320 0.88286 0.91235 0.88103 0.95440 0.83684 0.81655 0.84690 0.83177 1.00000 1.00000 0.77109 0.82515 0.81008 1.00000 1.00000 0.59270 0.57362 0.55847 0.80412 0.61448 0.57823 0.66982 0.71752 0.82404 0.70632 0.75409 0.82979 0.67953 0.70669 1.00000 0.68078 0.52152 0.39183 1.00000 0.21839 0.24112 0.21870 0.24735
+ 7 10.2369 186.002567 x: 0.52455 0.88050 0.82774 0.94929 1.00000 0.82767 0.79745 0.84876 0.84592 1.00000 1.00000 0.77673 0.88758 0.81118 1.00000 1.00000 0.51382 0.57421 0.64441 0.74676 0.57459 0.57712 0.64629 0.70566 0.84214 0.71170 0.73690 0.78034 0.71453 0.77564 1.00000 0.65937 0.53707 0.19730 1.00000 0.21839 0.24112 0.21870 0.24735
+ 8 3.1057 185.382228 x: 0.53205 0.89510 0.83778 0.93718 1.00000 0.88975 0.86550 0.84646 0.81155 1.00000 1.00000 0.77628 0.88759 0.77067 1.00000 1.00000 0.50256 0.57127 0.67973 0.78164 0.59023 0.57945 0.63790 0.72320 0.87967 0.72051 0.73360 0.77678 0.75198 0.82328 1.00000 0.64593 0.53174 0.30157 1.00000 0.21839 0.24112 0.21870 0.24735
+ 9 4.6729 183.694279 x: 0.49413 0.99970 0.73564 0.90699 1.00000 0.86362 0.98516 0.74748 0.71295 1.00000 1.00000 0.80525 0.93598 0.76546 1.00000 1.00000 0.41900 0.54889 0.88564 0.80771 0.58354 0.56890 0.59990 0.73913 0.98970 0.70918 0.66050 0.66018 0.86069 1.00000 1.00000 0.59116 0.56596 0.32457 1.00000 0.21839 0.24112 0.21870 0.24735
+ 10 6.6786 183.687904 x: 0.49375 1.00000 0.73572 0.90707 1.00000 0.86362 0.98502 0.74737 0.71309 1.00000 1.00000 0.80533 0.93615 0.76554 1.00000 1.00000 0.41893 0.54893 0.88608 0.80772 0.58350 0.56888 0.59982 0.73925 0.99007 0.70920 0.66049 0.66015 0.86103 1.00000 1.00000 0.59103 0.56598 0.32475 1.00000 0.21839 0.24112 0.21870 0.24735
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+ 12 4.9804 183.007516 x: 0.48318 1.00000 0.75629 0.88767 1.00000 0.90233 0.93435 0.79090 0.68499 1.00000 1.00000 0.84237 1.00000 0.73680 1.00000 1.00000 0.43982 0.57054 0.93024 0.79828 0.57683 0.58551 0.59112 0.73050 1.00000 0.64831 0.64261 0.65753 0.93626 1.00000 1.00000 0.56490 0.57825 0.32082 1.00000 0.21839 0.24112 0.21870 0.24735
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+ 15 2.6726 181.750691 x: 0.40382 1.00000 0.85906 0.84247 1.00000 0.91493 0.93898 0.70965 0.79086 1.00000 1.00000 0.90498 1.00000 0.75493 1.00000 1.00000 0.32452 0.63352 0.99141 0.79859 0.48772 0.62600 0.45020 0.85409 1.00000 0.69084 0.64156 0.66456 1.00000 1.00000 1.00000 0.42709 0.54476 0.33236 1.00000 0.21839 0.24112 0.21870 0.24735
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+ 41 0.0151 181.373534 x: 0.36622 1.00000 0.86470 0.87085 1.00000 0.89010 0.89689 0.81114 0.79704 1.00000 1.00000 0.91507 1.00000 0.78203 1.00000 1.00000 0.37765 0.65162 0.99999 0.78306 0.50872 0.63415 0.46793 0.97758 1.00000 0.64708 0.69816 0.73974 1.00000 1.00000 1.00000 0.41471 0.51212 0.31922 1.00000 0.21839 0.24112 0.21870 0.24735
+ 42 0.0134 181.373531 x: 0.36619 1.00000 0.86447 0.87096 1.00000 0.89008 0.89695 0.81115 0.79710 1.00000 1.00000 0.91507 1.00000 0.78195 1.00000 1.00000 0.37761 0.65157 0.99999 0.78313 0.50864 0.63413 0.46803 0.97803 1.00000 0.64720 0.69835 0.73981 1.00000 1.00000 1.00000 0.41485 0.51231 0.31919 1.00000 0.21839 0.24112 0.21870 0.24735
+ 43 0.0050 181.373530 x: 0.36619 1.00000 0.86448 0.87096 1.00000 0.89009 0.89697 0.81108 0.79714 1.00000 1.00000 0.91504 1.00000 0.78197 1.00000 1.00000 0.37774 0.65153 0.99999 0.78308 0.50843 0.63417 0.46823 0.97825 1.00000 0.64707 0.69834 0.73972 1.00000 1.00000 1.00000 0.41496 0.51228 0.31921 1.00000 0.21839 0.24112 0.21870 0.24735
+ 44 0.0030 181.373530 x: 0.36618 1.00000 0.86453 0.87092 1.00000 0.89009 0.89696 0.81108 0.79712 1.00000 1.00000 0.91504 1.00000 0.78198 1.00000 1.00000 0.37781 0.65154 0.99999 0.78314 0.50848 0.63421 0.46833 0.97835 1.00000 0.64702 0.69837 0.73973 1.00000 1.00000 1.00000 0.41500 0.51219 0.31922 1.00000 0.21839 0.24112 0.21870 0.24735
+ 45 0.0011 181.373530 x: 0.36618 1.00000 0.86452 0.87092 1.00000 0.89009 0.89696 0.81110 0.79712 1.00000 1.00000 0.91504 1.00000 0.78197 1.00000 1.00000 0.37781 0.65155 0.99999 0.78312 0.50849 0.63420 0.46833 0.97837 1.00000 0.64700 0.69837 0.73974 1.00000 1.00000 1.00000 0.41499 0.51215 0.31922 1.00000 0.21839 0.24112 0.21870 0.24735
+ 46 0.0007 181.373530 x: 0.36618 1.00000 0.86452 0.87092 1.00000 0.89009 0.89696 0.81110 0.79712 1.00000 1.00000 0.91504 1.00000 0.78197 1.00000 1.00000 0.37781 0.65155 0.99999 0.78312 0.50849 0.63420 0.46833 0.97837 1.00000 0.64700 0.69837 0.73974 1.00000 1.00000 1.00000 0.41499 0.51215 0.31922 1.00000 0.21839 0.24112 0.21870 0.24735
\ No newline at end of file
diff --git a/trunk/test/paml/unrooted_present/localisation/run-prog b/trunk/test/paml/unrooted_present/localisation/run-prog
new file mode 100755
index 0000000000000000000000000000000000000000..945918153cb1f6341292988867c4e9af0722ee97
--- /dev/null
+++ b/trunk/test/paml/unrooted_present/localisation/run-prog
@@ -0,0 +1,18 @@
+#!/bin/sh -x
+
+# To obtain the file containing the sequences WITH the character S
+../../../../altree-add-S -i trio2.phy -j \
+nb_cas_controls.txt -o et_trio2.phy -e 1 -t DNA -p 0.5
+
+# paml is run on the tree reconstructed by phyml WITHOUT the character
+# S (file "trio2.phy_phyml_tree.txt" as first input file), but the
+# character S is included in the apomorphy list (file "et_trio2.phy as
+# second input file)
+baseml
+
+
+# To perform the localisation test
+../../../../altree -i rst \
+-j nb_cas_control.txt -t DNA -p paml --tree-to-analyse 1 \
+--s-site-number 11 --s-site-characters "C->G" \
+--co-evo double -l -o trio2.loc
diff --git a/trunk/test/paml/unrooted_present/localisation/trio2.loc b/trunk/test/paml/unrooted_present/localisation/trio2.loc
new file mode 100644
index 0000000000000000000000000000000000000000..bad39d4486f7981a8d7536aefd21ac0939aae60d
--- /dev/null
+++ b/trunk/test/paml/unrooted_present/localisation/trio2.loc
@@ -0,0 +1,23 @@
+Localisation method using S-character
+
+Results:
+site number 8 sens C-->G V_i = 1.98507947965328
+site number 5 sens G-->C V_i = 1.68559076178538
+site number 4 sens C-->G V_i = 1.18644749469062
+site number 10 sens C-->G V_i = 0.7974522228289
+site number 7 sens G-->C V_i = -0.328797974610715
+site number 3 sens G-->C V_i = -0.43495883620084
+site number 3 sens C-->G V_i = -0.43495883620084
+site number 8 sens G-->C V_i = -0.464990554975277
+site number 9 sens G-->C V_i = -0.493196961916072
+site number 2 sens C-->G V_i = -0.493196961916072
+site number 4 sens G-->C V_i = -0.493196961916072
+site number 7 sens C-->G V_i = -0.519875244910036
+site number 6 sens C-->G V_i = -0.545249756806271
+site number 1 sens C-->G V_i = -0.569494797451499
+site number 9 sens C-->G V_i = -0.569494797451499
+site number 2 sens G-->C V_i = -0.569494797451499
+site number 6 sens G-->C V_i = -0.677834389404565
+site number 5 sens C-->G V_i = -0.735214622093808
+site number 1 sens G-->C V_i = -0.900450337781496
+site number 10 sens G-->C V_i = -0.929981109950554
diff --git a/trunk/test/paml/unrooted_present/localisation/trio2.phy b/trunk/test/paml/unrooted_present/localisation/trio2.phy
new file mode 100644
index 0000000000000000000000000000000000000000..f83ea2101250b0ca41d0886e3fb2f42d4d166d64
--- /dev/null
+++ b/trunk/test/paml/unrooted_present/localisation/trio2.phy
@@ -0,0 +1,37 @@
+ 36 10
+H019 GCGGCGCCCC
+H026 GCCCGCGGGC
+H004 GCGGCCGGGC
+H020 CGGGGCCCCG
+H034 GCGGGCCCCG
+H027 CCCCGGCCCG
+H023 CCCCGCGGGC
+H016 GCGCCGGGGC
+H002 CCCCCGGGGC
+H015 CGGGGCCCGC
+H006 CGGGGCGGGC
+H001 CGGGGCCCCC
+H010 CCGCGCCCCG
+H028 CGGGGCCGCC
+H024 GCGGCGGGCC
+H017 CCCCGCCCCC
+H009 CCCCGGGCGC
+H007 CCGCGCGGGC
+H033 GCGCGCCCCG
+H008 GCGGCGGGGC
+H029 GCGGGCCCCC
+H003 CCGCCCCCCC
+H035 CCGCGCGGGG
+H013 GCGGCGCCCG
+H032 GCGCCGCGGC
+H025 GCGGGCGGGC
+H021 GCCCCGGCGC
+H030 CCGGGCGGCC
+H031 GCGGCGGCGC
+H012 CCCCGGGGGC
+H005 GCGGCGGGGG
+H011 CCGCGCCCCC
+H022 GCGGCCCCCG
+H014 GCCCGCCCCC
+H018 CCGGGCCCCC
+OUTG CCGGGCGGGC
diff --git a/trunk/test/paml/unrooted_present/localisation/trio2.phy_phyml_tree.txt b/trunk/test/paml/unrooted_present/localisation/trio2.phy_phyml_tree.txt
new file mode 100644
index 0000000000000000000000000000000000000000..7a9e40ebe0c855c5801a1f9f89eaf97c7a331a69
--- /dev/null
+++ b/trunk/test/paml/unrooted_present/localisation/trio2.phy_phyml_tree.txt
@@ -0,0 +1 @@
+(((((((((((((((((H010:0.000000,H033:0.114130):0.116459,(H027:0.274557,(H017:0.000004,H014:0.118913):0.000000):0.118933):0.000006,H011:0.000000):0.000000,H003:0.118921):0.116475,H018:0.000000):0.000000,(((H022:0.000000,(H013:0.000001,H019:0.111894):0.111900):0.111898,H034:0.000000):0.111896,H029:0.000000):0.114133):0.114148,H020:0.111888):0.000005,H001:0.000000):0.000002,H015:0.111898):0.111892,H028:0.000001):0.253376,H030:0.000000):0.109756,((H006:0.107699,((((((H031:0.107699,H005:0.105727):0.000000,(H032:0.109754,H016:0.000000):0.107699):0.000000,H008:0.000000):0.000000,H024:0.107699):0.107699,H004:0.000000):0.107700,H025:0.000000):0.107700):0.000000,OUTG:0.000000):0.000001):0.109752,H035:0.109755):0.000000,H007:0.000000):0.111901,(H026:0.111895,H023:0.000001):0.000000):0.111899,H012:0.000000):0.000000,(H021:0.260014,H002:0.000005):0.111874,H009:0.111896);
diff --git a/trunk/test/paup/ancestor_absent/association/1_caco.asso b/trunk/test/paup/ancestor_absent/association/1_caco.asso
new file mode 100644
index 0000000000000000000000000000000000000000..6ce818fba241fe975be65059b66cd34fa3d3ef0b
--- /dev/null
+++ b/trunk/test/paup/ancestor_absent/association/1_caco.asso
@@ -0,0 +1,56 @@
+
+ /----* H002 case/control:8/6
+ | /----* H008 case/control:9/2
+ | | Site: 11 Sens: 2-->1
+ |----* 14 case/control:13/4
+ | | Site: 9 Sens: 1-->2
+ | \----* H014 case/control:4/2
+ | Site: 10 Sens: 1-->2
+ /----* 15 case/control:57/25
+ | | Site: 1 Sens: 2-->1
+ | | Site: 2 Sens: 2-->1
+ | |----* H009 case/control:8/2
+ | | Site: 12 Sens: 2-->1
+ | \----* H006 case/control:28/13
+ | Site: 11 Sens: 2-->1
+ |----* H007 case/control:7/13
+ | Site: 12 Sens: 2-->1
+ /----* 16 case/control:70/43
+ | | Site: 8 Sens: 2-->1
+ | | Site: 10 Sens: 2-->1
+ | | Site: 9 Sens: 2-->1
+ | |----* H012 case/control:1/4
+ | | Site: 11 Sens: 2-->1
+ | \----* H011 case/control:5/1
+ /----* 17 case/control:72/47
+ | | Site: 6 Sens: 2-->1
+ | | Site: 7 Sens: 2-->1
+ | \----* H013 case/control:2/4
+ |----* H001 case/control:11/9
+ | Site: 1 Sens: 2-->1
+ | Site: 2 Sens: 2-->1
+-----* 20+(19) case/control:102/74
+ |
+ | [0] ddl=3 chi2=1.41 p_value_chi2=0.704
+ | [1] ddl=5 chi2=3.37 p_value_chi2=0.643
+ | [2] ddl=8 chi2=16.00 p_value_chi2=0.04
+ | [3] ddl=11 chi2=17.69 p_value_chi2=0.079
+ | [4] ddl=12 chi2=18.05 p_value_chi2=0.094
+ | /----* H003 case/control:5/6
+ | | Site: 4 Sens: 2-->1
+ |----* 18 case/control:12/13
+ | | Site: 3 Sens: 2-->1
+ | \----* H005 case/control:7/7
+ | Site: 12 Sens: 2-->1
+ \----* H010 case/control:7/5
+ Site: 5 Sens: 2-->1
+
+ Number of permutation: 1
+
+p_val for each level:
+level 1 p-value (non corrected) 0
+level 2 p-value (non corrected) 0.5
+level 3 p-value (non corrected) 0
+level 4 p-value (non corrected) 0
+level 5 p-value (non corrected) 0
+corrected minimal p_value in the tree: 0.5
diff --git a/trunk/test/paup/ancestor_absent/association/caco.paup b/trunk/test/paup/ancestor_absent/association/caco.paup
new file mode 100644
index 0000000000000000000000000000000000000000..4c553c24b2ba9373a57e41509249b0cac6ae43ca
--- /dev/null
+++ b/trunk/test/paup/ancestor_absent/association/caco.paup
@@ -0,0 +1,38 @@
+#Nexus
+Begin data;
+dimension ntax=13 nchar=12;
+format symbols="0123456789" missing=?;
+matrix
+H002 112221111122
+H010 222212222222
+H007 222221111121
+H008 112221112112
+H014 112221112222
+H013 222221122222
+H001 112222222222
+H003 221122222222
+[H004 222222222222]
+H005 221222222221
+H012 222221111112
+H009 112221111121
+H006 112221111112
+H011 222221111122
+;
+end;
+begin assumptions;
+ancstates *anc vector = 222222222222;
+end;
+begin paup;
+set nowarnreset autoclose maxtrees = 2000 increase= no [- Auto AutoInc = 100] monitor = no taxlabels = full
+root=lundberg warnroot=no opt=deltran [- acctran] ancstates=anc;
+hsearch;
+savetrees from=1 to=1000 file= test.tree root=yes format=altnexus;
+cleartrees nowarn=yes;
+gettrees rooted=yes file=test.tree;
+log file = test.res.log replace= yes [- no];
+describetrees all /plot=cladogram [- phylogram] brlens=yes
+rootmethod=lundberg apolist=yes;
+log stop;
+end;
+quit;
+[WARNING, this file is designed for bi-allelic data. If it is not the case, you may have to modify this input file, for example by specifying the ordered option in the typeset command in the assumption block]
diff --git a/trunk/test/paup/ancestor_absent/association/nb_cas_control.txt b/trunk/test/paup/ancestor_absent/association/nb_cas_control.txt
new file mode 100644
index 0000000000000000000000000000000000000000..ec9b7d90b0f6fc3983260c38f77f3bd42b037c09
--- /dev/null
+++ b/trunk/test/paup/ancestor_absent/association/nb_cas_control.txt
@@ -0,0 +1,13 @@
+H002 m008 c006
+H010 m007 c005
+H007 m007 c013
+H008 m009 c002
+H014 m004 c002
+H013 m002 c004
+H001 m011 c009
+H003 m005 c006
+H005 m007 c007
+H012 m001 c004
+H009 m008 c002
+H006 m028 c013
+H011 m005 c001
diff --git a/trunk/test/paup/ancestor_absent/association/run_altree b/trunk/test/paup/ancestor_absent/association/run_altree
new file mode 100755
index 0000000000000000000000000000000000000000..1549d332133bfc5e4cafc20e7acf96088fdabc71
--- /dev/null
+++ b/trunk/test/paup/ancestor_absent/association/run_altree
@@ -0,0 +1,8 @@
+#!/bin/sh -x
+
+#To run paup
+paup caco.paup
+
+#To perform the association test
+../../../../altree -i test.res.log -j nb_cas_control.txt -a -t SNP \
+ -p paup -r 1 --tree-to-analyse 1 -o 1_caco.asso
diff --git a/trunk/test/paup/ancestor_absent/association/test.res.log b/trunk/test/paup/ancestor_absent/association/test.res.log
new file mode 100644
index 0000000000000000000000000000000000000000..48fd3923d9a10acbcbd639af06a44b27a88eadf9
--- /dev/null
+++ b/trunk/test/paup/ancestor_absent/association/test.res.log
@@ -0,0 +1,8297 @@
+
+P A U P *
+Portable version 4.0b10 for Unix
+Thu Jan 12 21:56:20 2006
+
+ -----------------------------NOTICE-----------------------------
+ This is a beta-test version. Please report any crashes,
+ apparent calculation errors, or other anomalous results.
+ There are no restrictions on publication of results obtained
+ with this version, but you should check the WWW site
+ frequently for bug announcements and/or updated versions.
+ See the README file on the distribution media for details.
+ ----------------------------------------------------------------
+
+Tree description:
+
+ Optimality criterion = parsimony
+ Character-status summary:
+ Of 12 total characters:
+ All characters are of type 'unord'
+ All characters have equal weight
+ 2 characters are parsimony-uninformative
+ Number of parsimony-informative characters = 10
+ Character-state optimization: Delayed transformation (DELTRAN)
+ AncStates = "anc"
+
+Tree number 1:
+
+Branch lengths and linkages for tree #1
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 20 root 0 0 0
+ 19 20 0 0 0
+ 17 19 2 2 2
+ 16 17 3 3 3
+ 15 16 2 2 2
+H002 (1) 15 0 0 0
+ 14 15 1 1 1
+H008 (4) 14 1 1 1
+H014 (5) 14 1 1 1
+H009 (11) 15 1 1 1
+H006 (12) 15 1 1 1
+H007 (3) 16 1 1 1
+H012 (10) 16 1 1 1
+H011 (13) 16 0 0 0
+H013 (6) 17 0 0 0
+H001 (7) 19 2 2 2
+ 18 19 1 1 1
+H003 (8) 18 1 1 1
+H005 (9) 18 1 1 1
+H010 (2) 20 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /--------------------- H002
+ |
+ | /---------- H008
+ +---------14
+ /--------15 \---------- H014
+ | |
+ | +--------------------- H009
+ | |
+ | \--------------------- H006
+ /---------16
+ | +------------------------------- H007
+ | |
+ | +------------------------------- H012
+ /--------17 |
+ | | \------------------------------- H011
+ | |
+ | \------------------------------------------ H013
+ /---------19
+ | +---------------------------------------------------- H001
+ | |
+ | | /---------- H003
+---------20 \----------------------------------------18
+ | \---------- H005
+ |
+ \--------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_19 --> node_17 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_17 --> node_16 8 1 1.000 2 ==> 1
+ 9 1 0.500 2 ==> 1
+ 10 1 0.500 2 ==> 1
+ node_16 --> node_15 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_15 --> node_14 9 1 0.500 1 ==> 2
+ node_14 --> H008 11 1 0.333 2 ==> 1
+ node_14 --> H014 10 1 0.500 1 ==> 2
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_15 --> H006 11 1 0.333 2 ==> 1
+ node_16 --> H007 12 1 0.333 2 ==> 1
+ node_16 --> H012 11 1 0.333 2 ==> 1
+ node_19 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_19 --> node_18 3 1 1.000 2 ==> 1
+ node_18 --> H003 4 1 1.000 2 ==> 1
+ node_18 --> H005 12 1 0.333 2 ==> 1
+ node_20 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 2:
+
+Branch lengths and linkages for tree #2
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 22 root 0 0 0
+ 21 22 0 0 0
+ 19 21 0 0 2
+ 18 19 2 2 2
+ 17 18 3 1 3
+ 16 17 1 1 1
+ 15 16 1 1 1
+H002 (1) 15 0 0 0
+ 14 15 2 2 2
+H007 (3) 14 1 1 1
+H012 (10) 14 1 1 1
+H011 (13) 14 0 0 0
+H009 (11) 15 1 1 1
+H006 (12) 15 1 1 1
+H008 (4) 16 1 1 1
+H014 (5) 17 0 0 0
+H013 (6) 18 0 0 2
+H001 (7) 19 2 0 2
+ 20 21 1 1 1
+H003 (8) 20 1 1 1
+H005 (9) 20 1 1 1
+H010 (2) 22 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /---------------- H002
+ |
+ | /-------- H007
+ | |
+ +------14-------- H012
+ /------15 |
+ | | \-------- H011
+ | |
+ | +---------------- H009
+ /------16 |
+ | | \---------------- H006
+ | |
+ /-------17 \------------------------ H008
+ | |
+ /------18 \-------------------------------- H014
+ | |
+ /------19 \----------------------------------------- H013
+ | |
+ | \------------------------------------------------- H001
+ /------21
+ | | /-------- H003
+ | \-----------------------------------------------20
+-------22 \-------- H005
+ |
+ \----------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_19 --> node_18 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_18 --> node_17 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_17 --> node_16 10 1 1.000 2 ==> 1
+ node_16 --> node_15 9 1 1.000 2 ==> 1
+ node_15 --> node_14 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_14 --> H007 12 1 0.333 2 ==> 1
+ node_14 --> H012 11 1 0.333 2 ==> 1
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_15 --> H006 11 1 0.333 2 ==> 1
+ node_16 --> H008 11 1 0.333 2 ==> 1
+ node_19 --> H001 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ node_21 --> node_20 3 1 1.000 2 ==> 1
+ node_20 --> H003 4 1 1.000 2 ==> 1
+ node_20 --> H005 12 1 0.333 2 ==> 1
+ node_22 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 3:
+
+Branch lengths and linkages for tree #3
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 21 root 0 0 0
+ 20 21 0 0 0
+ 18 20 2 2 2
+ 17 18 3 3 3
+ 16 17 2 2 2
+H002 (1) 16 0 0 0
+ 15 16 0 0 1
+ 14 15 1 1 1
+H008 (4) 14 1 0 1
+H014 (5) 14 1 1 2
+H006 (12) 15 1 0 1
+H009 (11) 16 1 1 1
+H007 (3) 17 1 1 1
+H012 (10) 17 1 1 1
+H011 (13) 17 0 0 0
+H013 (6) 18 0 0 0
+H001 (7) 20 2 2 2
+ 19 20 1 1 1
+H003 (8) 19 1 1 1
+H005 (9) 19 1 1 1
+H010 (2) 21 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /--------------------------- H002
+ |
+ | /--------- H008
+ | /-------14
+ /--------16 | \--------- H014
+ | +-------15
+ | | \------------------ H006
+ | |
+ | \--------------------------- H009
+ /-------17
+ | +------------------------------------- H007
+ | |
+ | +------------------------------------- H012
+ /-------18 |
+ | | \------------------------------------- H011
+ | |
+ | \---------------------------------------------- H013
+ /-------20
+ | +------------------------------------------------------- H001
+ | |
+ | | /--------- H003
+--------21 \--------------------------------------------19
+ | \--------- H005
+ |
+ \---------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_20 --> node_18 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_18 --> node_17 8 1 1.000 2 ==> 1
+ 9 1 0.500 2 ==> 1
+ 10 1 0.500 2 ==> 1
+ node_17 --> node_16 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_15 --> node_14 9 1 0.500 1 ==> 2
+ node_14 --> H008 11 1 0.333 2 --> 1
+ node_14 --> H014 10 1 0.500 1 ==> 2
+ node_15 --> H006 11 1 0.333 2 --> 1
+ node_16 --> H009 12 1 0.333 2 ==> 1
+ node_17 --> H007 12 1 0.333 2 ==> 1
+ node_17 --> H012 11 1 0.333 2 ==> 1
+ node_20 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_20 --> node_19 3 1 1.000 2 ==> 1
+ node_19 --> H003 4 1 1.000 2 ==> 1
+ node_19 --> H005 12 1 0.333 2 ==> 1
+ node_21 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 4:
+
+Branch lengths and linkages for tree #4
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 22 root 0 0 0
+ 21 22 0 0 0
+ 19 21 2 2 2
+ 18 19 3 3 3
+ 17 18 0 0 1
+ 16 17 2 2 2
+ 14 16 0 0 1
+H002 (1) 14 0 0 0
+H009 (11) 14 1 1 1
+ 15 16 1 1 1
+H008 (4) 15 1 0 1
+H014 (5) 15 1 1 2
+H006 (12) 16 1 0 1
+H012 (10) 17 1 0 1
+H007 (3) 18 1 1 1
+H011 (13) 18 0 0 0
+H013 (6) 19 0 0 0
+H001 (7) 21 2 2 2
+ 20 21 1 1 1
+H003 (8) 20 1 1 1
+H005 (9) 20 1 1 1
+H010 (2) 22 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /--------- H002
+ /-------14
+ | \--------- H009
+ |
+ | /--------- H008
+ /-------16-------15
+ | | \--------- H014
+ | |
+ /--------17 \------------------ H006
+ | |
+ | \--------------------------- H012
+ /-------18
+ | +------------------------------------- H007
+ | |
+ /-------19 \------------------------------------- H011
+ | |
+ | \---------------------------------------------- H013
+ |
+ /-------21------------------------------------------------------- H001
+ | |
+ | | /--------- H003
+--------22 \--------------------------------------------20
+ | \--------- H005
+ |
+ \---------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_19 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_19 --> node_18 8 1 1.000 2 ==> 1
+ 9 1 0.500 2 ==> 1
+ 10 1 0.500 2 ==> 1
+ node_17 --> node_16 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_14 --> H009 12 1 0.333 2 ==> 1
+ node_16 --> node_15 9 1 0.500 1 ==> 2
+ node_15 --> H008 11 1 0.333 2 --> 1
+ node_15 --> H014 10 1 0.500 1 ==> 2
+ node_16 --> H006 11 1 0.333 2 --> 1
+ node_17 --> H012 11 1 0.333 2 --> 1
+ node_18 --> H007 12 1 0.333 2 ==> 1
+ node_21 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_21 --> node_20 3 1 1.000 2 ==> 1
+ node_20 --> H003 4 1 1.000 2 ==> 1
+ node_20 --> H005 12 1 0.333 2 ==> 1
+ node_22 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 5:
+
+Branch lengths and linkages for tree #5
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 22 23 0 0 0
+ 20 22 2 2 2
+ 19 20 3 3 3
+ 18 19 0 0 1
+ 17 18 2 2 2
+ 14 17 0 0 1
+H002 (1) 14 0 0 0
+H009 (11) 14 1 1 1
+ 16 17 0 0 1
+ 15 16 1 1 1
+H008 (4) 15 1 0 1
+H014 (5) 15 1 1 2
+H006 (12) 16 1 0 1
+H012 (10) 18 1 0 1
+H007 (3) 19 1 1 1
+H011 (13) 19 0 0 0
+H013 (6) 20 0 0 0
+H001 (7) 22 2 2 2
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (9) 21 1 1 1
+H010 (2) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /-------- H002
+ /--------------14
+ | \-------- H009
+ |
+ /------17 /-------- H008
+ | | /------15
+ | | | \-------- H014
+ /-------18 \------16
+ | | \---------------- H006
+ | |
+ | \-------------------------------- H012
+ /------19
+ | +----------------------------------------- H007
+ | |
+ /------20 \----------------------------------------- H011
+ | |
+ | \------------------------------------------------- H013
+ |
+ /------22--------------------------------------------------------- H001
+ | |
+ | | /-------- H003
+-------23 \-----------------------------------------------21
+ | \-------- H005
+ |
+ \----------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_20 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_20 --> node_19 8 1 1.000 2 ==> 1
+ 9 1 0.500 2 ==> 1
+ 10 1 0.500 2 ==> 1
+ node_18 --> node_17 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_14 --> H009 12 1 0.333 2 ==> 1
+ node_16 --> node_15 9 1 0.500 1 ==> 2
+ node_15 --> H008 11 1 0.333 2 --> 1
+ node_15 --> H014 10 1 0.500 1 ==> 2
+ node_16 --> H006 11 1 0.333 2 --> 1
+ node_18 --> H012 11 1 0.333 2 --> 1
+ node_19 --> H007 12 1 0.333 2 ==> 1
+ node_22 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 6:
+
+Branch lengths and linkages for tree #6
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 22 root 0 0 0
+ 21 22 0 0 0
+ 19 21 2 2 2
+ 18 19 2 2 3
+ 16 18 2 2 2
+ 14 16 1 0 1
+H002 (1) 14 0 0 0
+H009 (11) 14 1 1 1
+H006 (12) 14 1 1 1
+ 15 16 0 0 1
+H008 (4) 15 1 1 1
+H014 (5) 15 1 1 1
+ 17 18 1 0 1
+H007 (3) 17 1 1 1
+H012 (10) 17 1 1 1
+H011 (13) 17 0 0 0
+H013 (6) 19 0 0 0
+H001 (7) 21 2 2 2
+ 20 21 1 1 1
+H003 (8) 20 1 1 1
+H005 (9) 20 1 1 1
+H010 (2) 22 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /---------- H002
+ |
+ /---------14---------- H009
+ | |
+ | \---------- H006
+ /--------16
+ | | /---------- H008
+ | \---------15
+ | \---------- H014
+ /---------18
+ | | /---------- H007
+ | | |
+ | \-------------------17---------- H012
+ /--------19 |
+ | | \---------- H011
+ | |
+ | \------------------------------------------ H013
+ /---------21
+ | +---------------------------------------------------- H001
+ | |
+ | | /---------- H003
+---------22 \----------------------------------------20
+ | \---------- H005
+ |
+ \--------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_19 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_19 --> node_18 8 1 1.000 2 ==> 1
+ 10 1 0.500 2 ==> 1
+ node_18 --> node_16 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_16 --> node_14 9 1 0.500 2 --> 1
+ node_14 --> H009 12 1 0.333 2 ==> 1
+ node_14 --> H006 11 1 0.333 2 ==> 1
+ node_15 --> H008 11 1 0.333 2 ==> 1
+ node_15 --> H014 10 1 0.500 1 ==> 2
+ node_18 --> node_17 9 1 0.500 2 --> 1
+ node_17 --> H007 12 1 0.333 2 ==> 1
+ node_17 --> H012 11 1 0.333 2 ==> 1
+ node_21 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_21 --> node_20 3 1 1.000 2 ==> 1
+ node_20 --> H003 4 1 1.000 2 ==> 1
+ node_20 --> H005 12 1 0.333 2 ==> 1
+ node_22 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 7:
+
+Branch lengths and linkages for tree #7
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 21 root 0 0 0
+ 20 21 0 0 0
+ 18 20 2 2 2
+ 17 18 2 2 2
+ 15 17 2 2 2
+ 14 15 1 1 1
+H002 (1) 14 0 0 0
+H009 (11) 14 1 1 1
+H006 (12) 14 1 1 1
+H008 (4) 15 1 1 1
+H014 (5) 15 1 1 1
+ 16 17 1 1 1
+H007 (3) 16 1 1 1
+H012 (10) 16 1 1 1
+H011 (13) 16 0 0 0
+H013 (6) 18 0 0 0
+H001 (7) 20 2 2 2
+ 19 20 1 1 1
+H003 (8) 19 1 1 1
+H005 (9) 19 1 1 1
+H010 (2) 21 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /---------- H002
+ |
+ /---------14---------- H009
+ | |
+ | \---------- H006
+ /--------15
+ | +--------------------- H008
+ | |
+ | \--------------------- H014
+ /---------17
+ | | /---------- H007
+ | | |
+ | \-------------------16---------- H012
+ /--------18 |
+ | | \---------- H011
+ | |
+ | \------------------------------------------ H013
+ /---------20
+ | +---------------------------------------------------- H001
+ | |
+ | | /---------- H003
+---------21 \----------------------------------------19
+ | \---------- H005
+ |
+ \--------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_20 --> node_18 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_18 --> node_17 8 1 1.000 2 ==> 1
+ 10 1 0.500 2 ==> 1
+ node_17 --> node_15 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_15 --> node_14 9 1 0.500 2 ==> 1
+ node_14 --> H009 12 1 0.333 2 ==> 1
+ node_14 --> H006 11 1 0.333 2 ==> 1
+ node_15 --> H008 11 1 0.333 2 ==> 1
+ node_15 --> H014 10 1 0.500 1 ==> 2
+ node_17 --> node_16 9 1 0.500 2 ==> 1
+ node_16 --> H007 12 1 0.333 2 ==> 1
+ node_16 --> H012 11 1 0.333 2 ==> 1
+ node_20 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_20 --> node_19 3 1 1.000 2 ==> 1
+ node_19 --> H003 4 1 1.000 2 ==> 1
+ node_19 --> H005 12 1 0.333 2 ==> 1
+ node_21 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 8:
+
+Branch lengths and linkages for tree #8
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 22 23 0 0 0
+ 20 22 2 2 2
+ 19 20 1 1 2
+ 17 19 2 2 2
+ 16 17 1 0 2
+ 15 16 1 1 1
+ 14 15 0 0 1
+H002 (1) 14 0 0 0
+H009 (11) 14 1 1 1
+H006 (12) 15 1 0 1
+H008 (4) 16 1 0 1
+H014 (5) 17 0 0 1
+ 18 19 2 1 2
+H007 (3) 18 1 1 1
+H012 (10) 18 1 1 1
+H011 (13) 18 0 0 0
+H013 (6) 20 0 0 0
+H001 (7) 22 2 2 2
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (9) 21 1 1 1
+H010 (2) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /-------- H002
+ /------14
+ | \-------- H009
+ /------15
+ | \---------------- H006
+ /------16
+ | \------------------------ H008
+ /-------17
+ | \-------------------------------- H014
+ |
+ /------19 /-------- H007
+ | | |
+ | \-------------------------------18-------- H012
+ /------20 |
+ | | \-------- H011
+ | |
+ | \------------------------------------------------- H013
+ /------22
+ | +--------------------------------------------------------- H001
+ | |
+ | | /-------- H003
+-------23 \-----------------------------------------------21
+ | \-------- H005
+ |
+ \----------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_20 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_20 --> node_19 8 1 1.000 2 ==> 1
+ node_19 --> node_17 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_17 --> node_16 10 1 0.500 2 --> 1
+ node_16 --> node_15 9 1 0.500 2 ==> 1
+ node_14 --> H009 12 1 0.333 2 ==> 1
+ node_15 --> H006 11 1 0.333 2 --> 1
+ node_16 --> H008 11 1 0.333 2 --> 1
+ node_19 --> node_18 9 1 0.500 2 ==> 1
+ 10 1 0.500 2 --> 1
+ node_18 --> H007 12 1 0.333 2 ==> 1
+ node_18 --> H012 11 1 0.333 2 ==> 1
+ node_22 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 9:
+
+Branch lengths and linkages for tree #9
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 22 23 0 0 0
+ 20 22 2 2 2
+ 19 20 3 3 3
+ 18 19 0 0 1
+ 17 18 2 2 2
+ 16 17 0 0 1
+H002 (1) 16 0 0 0
+ 15 16 0 0 1
+ 14 15 1 1 1
+H008 (4) 14 1 0 1
+H014 (5) 14 1 1 2
+H006 (12) 15 1 0 1
+H009 (11) 17 1 0 1
+H007 (3) 18 1 0 1
+H012 (10) 19 1 1 1
+H011 (13) 19 0 0 0
+H013 (6) 20 0 0 0
+H001 (7) 22 2 2 2
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (9) 21 1 1 1
+H010 (2) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /---------------------- H002
+ |
+ | /------- H008
+ /-----16 /------14
+ | | | \------- H014
+ | \-----15
+ /-----17 \--------------- H006
+ | |
+ /------18 \----------------------------- H009
+ | |
+ | \------------------------------------ H007
+ /-----19
+ | +-------------------------------------------- H012
+ | |
+ /-----20 \-------------------------------------------- H011
+ | |
+ | \--------------------------------------------------- H013
+ |
+ /------22---------------------------------------------------------- H001
+ | |
+ | | /------- H003
+------23 \-------------------------------------------------21
+ | \------- H005
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_20 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_20 --> node_19 8 1 1.000 2 ==> 1
+ 9 1 0.500 2 ==> 1
+ 10 1 0.500 2 ==> 1
+ node_18 --> node_17 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_15 --> node_14 9 1 0.500 1 ==> 2
+ node_14 --> H008 11 1 0.333 2 --> 1
+ node_14 --> H014 10 1 0.500 1 ==> 2
+ node_15 --> H006 11 1 0.333 2 --> 1
+ node_17 --> H009 12 1 0.333 2 --> 1
+ node_18 --> H007 12 1 0.333 2 --> 1
+ node_19 --> H012 11 1 0.333 2 ==> 1
+ node_22 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 10:
+
+Branch lengths and linkages for tree #10
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 21 root 0 0 0
+ 20 21 0 0 0
+ 18 20 2 2 2
+ 17 18 3 3 3
+ 16 17 2 2 2
+H002 (1) 16 0 0 0
+ 15 16 0 0 1
+ 14 15 1 1 1
+H008 (4) 14 1 0 1
+H006 (12) 14 0 0 1
+H014 (5) 15 2 1 2
+H009 (11) 16 1 1 1
+H007 (3) 17 1 1 1
+H012 (10) 17 1 1 1
+H011 (13) 17 0 0 0
+H013 (6) 18 0 0 0
+H001 (7) 20 2 2 2
+ 19 20 1 1 1
+H003 (8) 19 1 1 1
+H005 (9) 19 1 1 1
+H010 (2) 21 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /--------------------------- H002
+ |
+ | /--------- H008
+ | /-------14
+ /--------16 | \--------- H006
+ | +-------15
+ | | \------------------ H014
+ | |
+ | \--------------------------- H009
+ /-------17
+ | +------------------------------------- H007
+ | |
+ | +------------------------------------- H012
+ /-------18 |
+ | | \------------------------------------- H011
+ | |
+ | \---------------------------------------------- H013
+ /-------20
+ | +------------------------------------------------------- H001
+ | |
+ | | /--------- H003
+--------21 \--------------------------------------------19
+ | \--------- H005
+ |
+ \---------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_20 --> node_18 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_18 --> node_17 8 1 1.000 2 ==> 1
+ 9 1 0.333 2 ==> 1
+ 10 1 0.500 2 ==> 1
+ node_17 --> node_16 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_15 --> node_14 11 1 0.500 2 ==> 1
+ node_14 --> H008 9 1 0.333 1 --> 2
+ node_15 --> H014 9 1 0.333 1 --> 2
+ 10 1 0.500 1 ==> 2
+ node_16 --> H009 12 1 0.333 2 ==> 1
+ node_17 --> H007 12 1 0.333 2 ==> 1
+ node_17 --> H012 11 1 0.500 2 ==> 1
+ node_20 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_20 --> node_19 3 1 1.000 2 ==> 1
+ node_19 --> H003 4 1 1.000 2 ==> 1
+ node_19 --> H005 12 1 0.333 2 ==> 1
+ node_21 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 11:
+
+Branch lengths and linkages for tree #11
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 22 23 0 0 0
+ 20 22 2 2 2
+ 19 20 3 3 3
+ 18 19 0 0 1
+ 17 18 2 2 2
+ 16 17 0 0 1
+ 14 16 0 0 1
+H002 (1) 14 0 0 0
+H009 (11) 14 1 1 1
+ 15 16 1 1 1
+H008 (4) 15 1 0 1
+H014 (5) 15 1 1 2
+H006 (12) 17 1 0 1
+H012 (10) 18 1 0 1
+H007 (3) 19 1 1 1
+H011 (13) 19 0 0 0
+H013 (6) 20 0 0 0
+H001 (7) 22 2 2 2
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (9) 21 1 1 1
+H010 (2) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /-------- H002
+ /------14
+ | \-------- H009
+ /------16
+ | | /-------- H008
+ | \------15
+ /------17 \-------- H014
+ | |
+ /-------18 \------------------------ H006
+ | |
+ | \-------------------------------- H012
+ /------19
+ | +----------------------------------------- H007
+ | |
+ /------20 \----------------------------------------- H011
+ | |
+ | \------------------------------------------------- H013
+ |
+ /------22--------------------------------------------------------- H001
+ | |
+ | | /-------- H003
+-------23 \-----------------------------------------------21
+ | \-------- H005
+ |
+ \----------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_20 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_20 --> node_19 8 1 1.000 2 ==> 1
+ 9 1 0.500 2 ==> 1
+ 10 1 0.500 2 ==> 1
+ node_18 --> node_17 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_14 --> H009 12 1 0.333 2 ==> 1
+ node_16 --> node_15 9 1 0.500 1 ==> 2
+ node_15 --> H008 11 1 0.333 2 --> 1
+ node_15 --> H014 10 1 0.500 1 ==> 2
+ node_17 --> H006 11 1 0.333 2 --> 1
+ node_18 --> H012 11 1 0.333 2 --> 1
+ node_19 --> H007 12 1 0.333 2 ==> 1
+ node_22 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 12:
+
+Branch lengths and linkages for tree #12
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 20 root 0 0 0
+ 19 20 0 0 0
+ 17 19 2 2 2
+ 16 17 3 3 3
+ 15 16 2 2 2
+H002 (1) 15 0 0 0
+ 14 15 1 1 1
+H008 (4) 14 1 1 1
+H006 (12) 14 0 0 0
+H014 (5) 15 2 2 2
+H009 (11) 15 1 1 1
+H007 (3) 16 1 1 1
+H012 (10) 16 1 1 1
+H011 (13) 16 0 0 0
+H013 (6) 17 0 0 0
+H001 (7) 19 2 2 2
+ 18 19 1 1 1
+H003 (8) 18 1 1 1
+H005 (9) 18 1 1 1
+H010 (2) 20 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /--------------------- H002
+ |
+ | /---------- H008
+ +---------14
+ /--------15 \---------- H006
+ | |
+ | +--------------------- H014
+ | |
+ | \--------------------- H009
+ /---------16
+ | +------------------------------- H007
+ | |
+ | +------------------------------- H012
+ /--------17 |
+ | | \------------------------------- H011
+ | |
+ | \------------------------------------------ H013
+ /---------19
+ | +---------------------------------------------------- H001
+ | |
+ | | /---------- H003
+---------20 \----------------------------------------18
+ | \---------- H005
+ |
+ \--------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_19 --> node_17 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_17 --> node_16 8 1 1.000 2 ==> 1
+ 9 1 0.333 2 ==> 1
+ 10 1 0.500 2 ==> 1
+ node_16 --> node_15 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_15 --> node_14 11 1 0.500 2 ==> 1
+ node_14 --> H008 9 1 0.333 1 ==> 2
+ node_15 --> H014 9 1 0.333 1 ==> 2
+ 10 1 0.500 1 ==> 2
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_16 --> H007 12 1 0.333 2 ==> 1
+ node_16 --> H012 11 1 0.500 2 ==> 1
+ node_19 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_19 --> node_18 3 1 1.000 2 ==> 1
+ node_18 --> H003 4 1 1.000 2 ==> 1
+ node_18 --> H005 12 1 0.333 2 ==> 1
+ node_20 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 13:
+
+Branch lengths and linkages for tree #13
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 22 root 0 0 0
+ 21 22 0 0 0
+ 19 21 0 0 2
+ 18 19 2 2 2
+ 17 18 3 1 3
+ 16 17 1 1 1
+ 15 16 1 1 1
+H002 (1) 15 0 0 0
+ 14 15 2 2 2
+H007 (3) 14 1 1 1
+H012 (10) 14 1 1 1
+H011 (13) 14 0 0 0
+H009 (11) 15 1 1 1
+H006 (12) 15 1 1 1
+H008 (4) 16 1 1 1
+H014 (5) 17 0 0 0
+H001 (7) 18 0 0 2
+H013 (6) 19 2 0 2
+ 20 21 1 1 1
+H003 (8) 20 1 1 1
+H005 (9) 20 1 1 1
+H010 (2) 22 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /---------------- H002
+ |
+ | /-------- H007
+ | |
+ +------14-------- H012
+ /------15 |
+ | | \-------- H011
+ | |
+ | +---------------- H009
+ /------16 |
+ | | \---------------- H006
+ | |
+ /-------17 \------------------------ H008
+ | |
+ /------18 \-------------------------------- H014
+ | |
+ /------19 \----------------------------------------- H001
+ | |
+ | \------------------------------------------------- H013
+ /------21
+ | | /-------- H003
+ | \-----------------------------------------------20
+-------22 \-------- H005
+ |
+ \----------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_19 --> node_18 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_18 --> node_17 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_17 --> node_16 10 1 1.000 2 ==> 1
+ node_16 --> node_15 9 1 1.000 2 ==> 1
+ node_15 --> node_14 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_14 --> H007 12 1 0.333 2 ==> 1
+ node_14 --> H012 11 1 0.333 2 ==> 1
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_15 --> H006 11 1 0.333 2 ==> 1
+ node_16 --> H008 11 1 0.333 2 ==> 1
+ node_19 --> H013 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ node_21 --> node_20 3 1 1.000 2 ==> 1
+ node_20 --> H003 4 1 1.000 2 ==> 1
+ node_20 --> H005 12 1 0.333 2 ==> 1
+ node_22 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 14:
+
+Branch lengths and linkages for tree #14
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 22 23 0 0 0
+ 20 22 0 0 2
+ 19 20 2 2 2
+ 18 19 3 1 3
+ 17 18 1 1 2
+ 16 17 1 1 1
+ 15 16 0 0 1
+H002 (1) 15 0 0 0
+ 14 15 2 2 2
+H007 (3) 14 1 1 1
+H012 (10) 14 1 1 1
+H011 (13) 14 0 0 0
+H009 (11) 15 1 1 1
+H006 (12) 16 1 0 1
+H008 (4) 17 1 0 1
+H014 (5) 18 0 0 0
+H013 (6) 19 0 0 2
+H001 (7) 20 2 0 2
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (9) 21 1 1 1
+H010 (2) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /--------------- H002
+ |
+ | /------- H007
+ | |
+ /-----15------14------- H012
+ | | |
+ | | \------- H011
+ /-----16 |
+ | | \--------------- H009
+ | |
+ /-----17 \---------------------- H006
+ | |
+ /------18 \----------------------------- H008
+ | |
+ /-----19 \------------------------------------ H014
+ | |
+ /-----20 \-------------------------------------------- H013
+ | |
+ | \--------------------------------------------------- H001
+ /------22
+ | | /------- H003
+ | \-------------------------------------------------21
+------23 \------- H005
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_20 --> node_19 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_19 --> node_18 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_18 --> node_17 10 1 1.000 2 ==> 1
+ node_17 --> node_16 9 1 1.000 2 ==> 1
+ node_15 --> node_14 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_14 --> H007 12 1 0.333 2 ==> 1
+ node_14 --> H012 11 1 0.333 2 ==> 1
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_16 --> H006 11 1 0.333 2 --> 1
+ node_17 --> H008 11 1 0.333 2 --> 1
+ node_20 --> H001 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 15:
+
+Branch lengths and linkages for tree #15
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 22 root 0 0 0
+ 21 22 0 0 0
+ 19 21 0 0 2
+ 18 19 2 2 2
+ 17 18 3 1 3
+ 16 17 2 2 2
+H002 (1) 16 0 0 0
+ 14 16 2 2 2
+H007 (3) 14 1 1 1
+H012 (10) 14 1 1 1
+H011 (13) 14 0 0 0
+ 15 16 1 1 1
+H008 (4) 15 1 1 1
+H006 (12) 15 0 0 0
+H009 (11) 16 1 1 1
+H014 (5) 17 0 0 0
+H013 (6) 18 0 0 2
+H001 (7) 19 2 0 2
+ 20 21 1 1 1
+H003 (8) 20 1 1 1
+H005 (9) 20 1 1 1
+H010 (2) 22 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /------------------ H002
+ |
+ | /--------- H007
+ | |
+ +-------14--------- H012
+ | |
+ /-------16 \--------- H011
+ | |
+ | | /--------- H008
+ | +-------15
+ /--------17 | \--------- H006
+ | | |
+ | | \------------------ H009
+ /-------18 |
+ | | \--------------------------- H014
+ | |
+ /-------19 \------------------------------------- H013
+ | |
+ | \---------------------------------------------- H001
+ /-------21
+ | | /--------- H003
+ | \--------------------------------------------20
+--------22 \--------- H005
+ |
+ \---------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_19 --> node_18 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_18 --> node_17 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_17 --> node_16 9 1 0.500 2 ==> 1
+ 10 1 1.000 2 ==> 1
+ node_16 --> node_14 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_14 --> H007 12 1 0.333 2 ==> 1
+ node_14 --> H012 11 1 0.500 2 ==> 1
+ node_16 --> node_15 11 1 0.500 2 ==> 1
+ node_15 --> H008 9 1 0.500 1 ==> 2
+ node_16 --> H009 12 1 0.333 2 ==> 1
+ node_19 --> H001 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ node_21 --> node_20 3 1 1.000 2 ==> 1
+ node_20 --> H003 4 1 1.000 2 ==> 1
+ node_20 --> H005 12 1 0.333 2 ==> 1
+ node_22 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 16:
+
+Branch lengths and linkages for tree #16
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 22 23 0 0 0
+ 20 22 0 0 2
+ 19 20 2 2 2
+ 18 19 1 1 3
+ 17 18 2 2 2
+ 15 17 2 0 2
+H002 (1) 15 0 0 0
+ 14 15 1 1 1
+H008 (4) 14 1 1 1
+H006 (12) 14 0 0 0
+H009 (11) 15 1 1 1
+ 16 17 0 0 2
+H007 (3) 16 1 1 1
+H012 (10) 16 1 1 1
+H011 (13) 16 0 0 0
+H014 (5) 18 2 0 2
+H013 (6) 19 0 0 2
+H001 (7) 20 2 0 2
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (9) 21 1 1 1
+H010 (2) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /---------------- H002
+ |
+ | /-------- H008
+ /------15------14
+ | | \-------- H006
+ | |
+ | \---------------- H009
+ /------17
+ | | /-------- H007
+ | | |
+ | \--------------16-------- H012
+ /-------18 |
+ | | \-------- H011
+ | |
+ /------19 \-------------------------------- H014
+ | |
+ /------20 \----------------------------------------- H013
+ | |
+ | \------------------------------------------------- H001
+ /------22
+ | | /-------- H003
+ | \-----------------------------------------------21
+-------23 \-------- H005
+ |
+ \----------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_20 --> node_19 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_19 --> node_18 8 1 1.000 2 ==> 1
+ node_18 --> node_17 9 1 0.500 2 ==> 1
+ 10 1 1.000 2 ==> 1
+ node_17 --> node_15 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ node_15 --> node_14 11 1 0.500 2 ==> 1
+ node_14 --> H008 9 1 0.500 1 ==> 2
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_16 --> H007 12 1 0.333 2 ==> 1
+ node_16 --> H012 11 1 0.500 2 ==> 1
+ node_18 --> H014 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ node_20 --> H001 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 17:
+
+Branch lengths and linkages for tree #17
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 21 root 0 0 0
+ 20 21 0 0 0
+ 18 20 2 2 2
+ 17 18 1 1 1
+ 16 17 2 2 2
+ 15 16 2 2 2
+H002 (1) 15 0 0 0
+ 14 15 1 1 1
+H008 (4) 14 1 1 1
+H006 (12) 14 0 0 0
+H009 (11) 15 1 1 1
+H007 (3) 16 1 1 1
+H012 (10) 16 1 1 1
+H011 (13) 16 0 0 0
+H014 (5) 17 2 2 2
+H013 (6) 18 0 0 0
+H001 (7) 20 2 2 2
+ 19 20 1 1 1
+H003 (8) 19 1 1 1
+H005 (9) 19 1 1 1
+H010 (2) 21 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /------------------ H002
+ |
+ | /--------- H008
+ /-------15-------14
+ | | \--------- H006
+ | |
+ | \------------------ H009
+ |
+ /--------16--------------------------- H007
+ | |
+ | +--------------------------- H012
+ /-------17 |
+ | | \--------------------------- H011
+ | |
+ /-------18 \------------------------------------- H014
+ | |
+ | \---------------------------------------------- H013
+ |
+ /-------20------------------------------------------------------- H001
+ | |
+ | | /--------- H003
+--------21 \--------------------------------------------19
+ | \--------- H005
+ |
+ \---------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_20 --> node_18 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_18 --> node_17 8 1 1.000 2 ==> 1
+ node_17 --> node_16 9 1 0.500 2 ==> 1
+ 10 1 1.000 2 ==> 1
+ node_16 --> node_15 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_15 --> node_14 11 1 0.500 2 ==> 1
+ node_14 --> H008 9 1 0.500 1 ==> 2
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_16 --> H007 12 1 0.333 2 ==> 1
+ node_16 --> H012 11 1 0.500 2 ==> 1
+ node_17 --> H014 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_20 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_20 --> node_19 3 1 1.000 2 ==> 1
+ node_19 --> H003 4 1 1.000 2 ==> 1
+ node_19 --> H005 12 1 0.333 2 ==> 1
+ node_21 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 18:
+
+Branch lengths and linkages for tree #18
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 22 root 0 0 0
+ 21 22 0 0 0
+ 19 21 2 2 2
+ 18 19 3 3 3
+ 17 18 1 1 2
+ 16 17 1 1 1
+ 15 16 0 0 1
+H002 (1) 15 0 0 0
+ 14 15 2 2 2
+H007 (3) 14 1 1 1
+H012 (10) 14 1 1 1
+H011 (13) 14 0 0 0
+H009 (11) 15 1 1 1
+H006 (12) 16 1 0 1
+H008 (4) 17 1 0 1
+H014 (5) 18 0 0 0
+H001 (7) 19 0 0 0
+H013 (6) 21 2 2 2
+ 20 21 1 1 1
+H003 (8) 20 1 1 1
+H005 (9) 20 1 1 1
+H010 (2) 22 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /---------------- H002
+ |
+ | /-------- H007
+ | |
+ /------15------14-------- H012
+ | | |
+ | | \-------- H011
+ /------16 |
+ | | \---------------- H009
+ | |
+ /-------17 \------------------------ H006
+ | |
+ /------18 \-------------------------------- H008
+ | |
+ /------19 \----------------------------------------- H014
+ | |
+ | \------------------------------------------------- H001
+ |
+ /------21--------------------------------------------------------- H013
+ | |
+ | | /-------- H003
+-------22 \-----------------------------------------------20
+ | \-------- H005
+ |
+ \----------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_19 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_19 --> node_18 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_18 --> node_17 10 1 1.000 2 ==> 1
+ node_17 --> node_16 9 1 1.000 2 ==> 1
+ node_15 --> node_14 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_14 --> H007 12 1 0.333 2 ==> 1
+ node_14 --> H012 11 1 0.333 2 ==> 1
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_16 --> H006 11 1 0.333 2 --> 1
+ node_17 --> H008 11 1 0.333 2 --> 1
+ node_21 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ node_21 --> node_20 3 1 1.000 2 ==> 1
+ node_20 --> H003 4 1 1.000 2 ==> 1
+ node_20 --> H005 12 1 0.333 2 ==> 1
+ node_22 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 19:
+
+Branch lengths and linkages for tree #19
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 22 23 0 0 0
+ 20 22 0 0 2
+ 19 20 2 2 2
+ 18 19 3 1 3
+ 17 18 1 1 2
+ 15 17 1 0 1
+H002 (1) 15 0 0 0
+ 14 15 2 2 2
+H007 (3) 14 1 1 1
+H012 (10) 14 1 1 1
+H011 (13) 14 0 0 0
+H009 (11) 15 1 1 1
+ 16 17 1 1 1
+H008 (4) 16 0 0 1
+H006 (12) 16 1 0 1
+H014 (5) 18 0 0 0
+H013 (6) 19 0 0 2
+H001 (7) 20 2 0 2
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (9) 21 1 1 1
+H010 (2) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /---------------- H002
+ |
+ | /-------- H007
+ | |
+ /------15------14-------- H012
+ | | |
+ | | \-------- H011
+ | |
+ /------17 \---------------- H009
+ | |
+ | | /-------- H008
+ /-------18 \--------------16
+ | | \-------- H006
+ | |
+ /------19 \-------------------------------- H014
+ | |
+ /------20 \----------------------------------------- H013
+ | |
+ | \------------------------------------------------- H001
+ /------22
+ | | /-------- H003
+ | \-----------------------------------------------21
+-------23 \-------- H005
+ |
+ \----------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_20 --> node_19 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_19 --> node_18 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_18 --> node_17 10 1 1.000 2 ==> 1
+ node_17 --> node_15 9 1 0.500 2 --> 1
+ node_15 --> node_14 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_14 --> H007 12 1 0.333 2 ==> 1
+ node_14 --> H012 11 1 0.500 2 ==> 1
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_17 --> node_16 11 1 0.500 2 ==> 1
+ node_16 --> H006 9 1 0.500 2 --> 1
+ node_20 --> H001 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 20:
+
+Branch lengths and linkages for tree #20
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 22 23 0 0 0
+ 20 22 0 0 2
+ 19 20 2 2 2
+ 18 19 3 1 3
+ 17 18 1 1 2
+ 16 17 1 1 1
+ 15 16 0 0 1
+H002 (1) 15 0 0 0
+ 14 15 2 2 2
+H007 (3) 14 1 1 1
+H012 (10) 14 1 1 1
+H011 (13) 14 0 0 0
+H009 (11) 15 1 1 1
+H006 (12) 16 1 0 1
+H008 (4) 17 1 0 1
+H014 (5) 18 0 0 0
+H001 (7) 19 0 0 2
+H013 (6) 20 2 0 2
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (9) 21 1 1 1
+H010 (2) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /--------------- H002
+ |
+ | /------- H007
+ | |
+ /-----15------14------- H012
+ | | |
+ | | \------- H011
+ /-----16 |
+ | | \--------------- H009
+ | |
+ /-----17 \---------------------- H006
+ | |
+ /------18 \----------------------------- H008
+ | |
+ /-----19 \------------------------------------ H014
+ | |
+ /-----20 \-------------------------------------------- H001
+ | |
+ | \--------------------------------------------------- H013
+ /------22
+ | | /------- H003
+ | \-------------------------------------------------21
+------23 \------- H005
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_20 --> node_19 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_19 --> node_18 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_18 --> node_17 10 1 1.000 2 ==> 1
+ node_17 --> node_16 9 1 1.000 2 ==> 1
+ node_15 --> node_14 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_14 --> H007 12 1 0.333 2 ==> 1
+ node_14 --> H012 11 1 0.333 2 ==> 1
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_16 --> H006 11 1 0.333 2 --> 1
+ node_17 --> H008 11 1 0.333 2 --> 1
+ node_20 --> H013 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 21:
+
+Branch lengths and linkages for tree #21
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 24 root 0 0 0
+ 23 24 0 0 0
+ 21 23 0 0 2
+ 20 21 2 2 2
+ 19 20 3 1 3
+ 18 19 1 1 1
+ 17 18 1 1 1
+H002 (1) 17 0 0 0
+ 16 17 0 0 1
+ 15 16 2 2 2
+ 14 15 0 0 1
+H007 (3) 14 1 1 1
+H011 (13) 14 0 0 0
+H012 (10) 15 1 0 1
+H006 (12) 16 1 0 1
+H009 (11) 17 1 1 1
+H008 (4) 18 1 1 1
+H014 (5) 19 0 0 0
+H013 (6) 20 0 0 2
+H001 (7) 21 2 0 2
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (9) 22 1 1 1
+H010 (2) 24 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /--------------------------- H002
+ |
+ | /------- H007
+ | /----14
+ | | \------- H011
+ /----17 /-----15
+ | | | \------------- H012
+ | +-----16
+ | | \-------------------- H006
+ /-----18 |
+ | | \--------------------------- H009
+ | |
+ /----19 \--------------------------------- H008
+ | |
+ /-----20 \---------------------------------------- H014
+ | |
+ /-----21 \---------------------------------------------- H013
+ | |
+ | \----------------------------------------------------- H001
+ /----23
+ | | /------- H003
+ | \---------------------------------------------------22
+------24 \------- H005
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_20 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_20 --> node_19 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_19 --> node_18 10 1 1.000 2 ==> 1
+ node_18 --> node_17 9 1 1.000 2 ==> 1
+ node_16 --> node_15 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_14 --> H007 12 1 0.333 2 ==> 1
+ node_15 --> H012 11 1 0.333 2 --> 1
+ node_16 --> H006 11 1 0.333 2 --> 1
+ node_17 --> H009 12 1 0.333 2 ==> 1
+ node_18 --> H008 11 1 0.333 2 ==> 1
+ node_21 --> H001 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+ node_24 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 22:
+
+Branch lengths and linkages for tree #22
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 22 root 0 0 0
+ 21 22 0 0 0
+ 19 21 2 2 2
+ 18 19 3 3 3
+ 17 18 1 1 2
+ 16 17 1 1 1
+ 15 16 0 0 1
+H002 (1) 15 0 0 0
+ 14 15 2 2 2
+H007 (3) 14 1 1 1
+H012 (10) 14 1 1 1
+H011 (13) 14 0 0 0
+H009 (11) 15 1 1 1
+H006 (12) 16 1 0 1
+H008 (4) 17 1 0 1
+H014 (5) 18 0 0 0
+H013 (6) 19 0 0 0
+H001 (7) 21 2 2 2
+ 20 21 1 1 1
+H003 (8) 20 1 1 1
+H005 (9) 20 1 1 1
+H010 (2) 22 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /---------------- H002
+ |
+ | /-------- H007
+ | |
+ /------15------14-------- H012
+ | | |
+ | | \-------- H011
+ /------16 |
+ | | \---------------- H009
+ | |
+ /-------17 \------------------------ H006
+ | |
+ /------18 \-------------------------------- H008
+ | |
+ /------19 \----------------------------------------- H014
+ | |
+ | \------------------------------------------------- H013
+ |
+ /------21--------------------------------------------------------- H001
+ | |
+ | | /-------- H003
+-------22 \-----------------------------------------------20
+ | \-------- H005
+ |
+ \----------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_19 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_19 --> node_18 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_18 --> node_17 10 1 1.000 2 ==> 1
+ node_17 --> node_16 9 1 1.000 2 ==> 1
+ node_15 --> node_14 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_14 --> H007 12 1 0.333 2 ==> 1
+ node_14 --> H012 11 1 0.333 2 ==> 1
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_16 --> H006 11 1 0.333 2 --> 1
+ node_17 --> H008 11 1 0.333 2 --> 1
+ node_21 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_21 --> node_20 3 1 1.000 2 ==> 1
+ node_20 --> H003 4 1 1.000 2 ==> 1
+ node_20 --> H005 12 1 0.333 2 ==> 1
+ node_22 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 23:
+
+Branch lengths and linkages for tree #23
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 25 root 0 0 0
+ 24 25 0 0 0
+ 22 24 0 0 2
+ 21 22 2 2 2
+ 20 21 3 1 3
+ 19 20 1 1 2
+ 18 19 1 1 1
+ 17 18 0 0 1
+ 14 17 0 0 1
+H002 (1) 14 0 0 0
+H009 (11) 14 1 1 1
+ 16 17 2 2 2
+ 15 16 0 0 1
+H007 (3) 15 1 1 1
+H011 (13) 15 0 0 0
+H012 (10) 16 1 0 1
+H006 (12) 18 1 0 1
+H008 (4) 19 1 0 1
+H014 (5) 20 0 0 0
+H013 (6) 21 0 0 2
+H001 (7) 22 2 0 2
+ 23 24 1 1 1
+H003 (8) 23 1 1 1
+H005 (9) 23 1 1 1
+H010 (2) 25 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /------- H002
+ /-----------14
+ | \------- H009
+ |
+ /-----17 /------- H007
+ | | /----15
+ | | | \------- H011
+ /----18 \-----16
+ | | \------------- H012
+ | |
+ /-----19 \--------------------------- H006
+ | |
+ /----20 \--------------------------------- H008
+ | |
+ /-----21 \---------------------------------------- H014
+ | |
+ /-----22 \---------------------------------------------- H013
+ | |
+ | \----------------------------------------------------- H001
+ /----24
+ | | /------- H003
+ | \---------------------------------------------------23
+------25 \------- H005
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_21 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_21 --> node_20 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_20 --> node_19 10 1 1.000 2 ==> 1
+ node_19 --> node_18 9 1 1.000 2 ==> 1
+ node_14 --> H009 12 1 0.333 2 ==> 1
+ node_17 --> node_16 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ node_16 --> H012 11 1 0.333 2 --> 1
+ node_18 --> H006 11 1 0.333 2 --> 1
+ node_19 --> H008 11 1 0.333 2 --> 1
+ node_22 --> H001 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ node_24 --> node_23 3 1 1.000 2 ==> 1
+ node_23 --> H003 4 1 1.000 2 ==> 1
+ node_23 --> H005 12 1 0.333 2 ==> 1
+ node_25 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 24:
+
+Branch lengths and linkages for tree #24
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 25 root 0 0 0
+ 24 25 0 0 0
+ 22 24 0 0 2
+ 21 22 2 2 2
+ 20 21 3 1 3
+ 19 20 1 1 2
+ 18 19 1 1 1
+ 14 18 0 0 1
+H002 (1) 14 0 0 0
+H009 (11) 14 1 1 1
+ 17 18 0 0 1
+ 16 17 2 2 2
+ 15 16 0 0 1
+H007 (3) 15 1 1 1
+H011 (13) 15 0 0 0
+H012 (10) 16 1 0 1
+H006 (12) 17 1 0 1
+H008 (4) 19 1 0 1
+H014 (5) 20 0 0 0
+H013 (6) 21 0 0 2
+H001 (7) 22 2 0 2
+ 23 24 1 1 1
+H003 (8) 23 1 1 1
+H005 (9) 23 1 1 1
+H010 (2) 25 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /------- H002
+ /------------------14
+ | \------- H009
+ |
+ | /------- H007
+ /----18 /----15
+ | | | \------- H011
+ | | /-----16
+ | | | \------------- H012
+ /-----19 \-----17
+ | | \-------------------- H006
+ | |
+ /----20 \--------------------------------- H008
+ | |
+ /-----21 \---------------------------------------- H014
+ | |
+ /-----22 \---------------------------------------------- H013
+ | |
+ | \----------------------------------------------------- H001
+ /----24
+ | | /------- H003
+ | \---------------------------------------------------23
+------25 \------- H005
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_21 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_21 --> node_20 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_20 --> node_19 10 1 1.000 2 ==> 1
+ node_19 --> node_18 9 1 1.000 2 ==> 1
+ node_14 --> H009 12 1 0.333 2 ==> 1
+ node_17 --> node_16 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ node_16 --> H012 11 1 0.333 2 --> 1
+ node_17 --> H006 11 1 0.333 2 --> 1
+ node_19 --> H008 11 1 0.333 2 --> 1
+ node_22 --> H001 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ node_24 --> node_23 3 1 1.000 2 ==> 1
+ node_23 --> H003 4 1 1.000 2 ==> 1
+ node_23 --> H005 12 1 0.333 2 ==> 1
+ node_25 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 25:
+
+Branch lengths and linkages for tree #25
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 24 root 0 0 0
+ 23 24 0 0 0
+ 21 23 0 0 2
+ 20 21 2 2 2
+ 19 20 3 1 3
+ 18 19 1 1 2
+ 17 18 1 1 1
+ 14 17 0 0 1
+H002 (1) 14 0 0 0
+H009 (11) 14 1 1 1
+ 16 17 2 2 2
+ 15 16 0 0 1
+H007 (3) 15 1 1 1
+H011 (13) 15 0 0 0
+H012 (10) 16 1 0 1
+H006 (12) 17 1 0 1
+H008 (4) 18 1 0 1
+H014 (5) 19 0 0 0
+H013 (6) 20 0 0 2
+H001 (7) 21 2 0 2
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (9) 22 1 1 1
+H010 (2) 24 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /------- H002
+ /-------------14
+ | \------- H009
+ |
+ | /------- H007
+ | /------15
+ /-----17 | \------- H011
+ | +-----16
+ | | \--------------- H012
+ /-----18 |
+ | | \---------------------- H006
+ | |
+ /------19 \----------------------------- H008
+ | |
+ /-----20 \------------------------------------ H014
+ | |
+ /-----21 \-------------------------------------------- H013
+ | |
+ | \--------------------------------------------------- H001
+ /------23
+ | | /------- H003
+ | \-------------------------------------------------22
+------24 \------- H005
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_20 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_20 --> node_19 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_19 --> node_18 10 1 1.000 2 ==> 1
+ node_18 --> node_17 9 1 1.000 2 ==> 1
+ node_14 --> H009 12 1 0.333 2 ==> 1
+ node_17 --> node_16 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ node_16 --> H012 11 1 0.333 2 --> 1
+ node_17 --> H006 11 1 0.333 2 --> 1
+ node_18 --> H008 11 1 0.333 2 --> 1
+ node_21 --> H001 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+ node_24 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 26:
+
+Branch lengths and linkages for tree #26
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 25 root 0 0 0
+ 24 25 0 0 0
+ 22 24 0 0 2
+ 21 22 2 2 2
+ 20 21 3 1 3
+ 19 20 1 1 2
+ 18 19 1 1 1
+ 17 18 0 0 1
+H002 (1) 17 0 0 0
+ 16 17 0 0 1
+ 15 16 2 2 2
+H007 (3) 15 1 0 1
+ 14 15 0 0 1
+H012 (10) 14 1 1 1
+H011 (13) 14 0 0 0
+H009 (11) 16 1 0 1
+H006 (12) 18 1 0 1
+H008 (4) 19 1 0 1
+H014 (5) 20 0 0 0
+H013 (6) 21 0 0 2
+H001 (7) 22 2 0 2
+ 23 24 1 1 1
+H003 (8) 23 1 1 1
+H005 (9) 23 1 1 1
+H010 (2) 25 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /------------------------ H002
+ |
+ | /------------ H007
+ /----17 |
+ | | /----15 /------ H012
+ | | | \----14
+ | \----16 \------ H011
+ /----18 |
+ | | \------------------ H009
+ | |
+ /-----19 \------------------------------ H006
+ | |
+ /----20 \------------------------------------ H008
+ | |
+ /----21 \------------------------------------------- H014
+ | |
+ /----22 \------------------------------------------------- H013
+ | |
+ | \------------------------------------------------------- H001
+ /----24
+ | | /------ H003
+ | \-----------------------------------------------------23
+-----25 \------ H005
+ |
+ \------------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_21 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_21 --> node_20 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_20 --> node_19 10 1 1.000 2 ==> 1
+ node_19 --> node_18 9 1 1.000 2 ==> 1
+ node_16 --> node_15 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 --> 1
+ node_14 --> H012 11 1 0.333 2 ==> 1
+ node_16 --> H009 12 1 0.333 2 --> 1
+ node_18 --> H006 11 1 0.333 2 --> 1
+ node_19 --> H008 11 1 0.333 2 --> 1
+ node_22 --> H001 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ node_24 --> node_23 3 1 1.000 2 ==> 1
+ node_23 --> H003 4 1 1.000 2 ==> 1
+ node_23 --> H005 12 1 0.333 2 ==> 1
+ node_25 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 27:
+
+Branch lengths and linkages for tree #27
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 22 root 0 0 0
+ 21 22 0 0 0
+ 19 21 2 2 2
+ 18 19 3 3 3
+ 17 18 0 0 1
+ 16 17 2 2 2
+ 15 16 0 0 1
+H002 (1) 15 0 0 0
+ 14 15 1 1 1
+H008 (4) 14 1 1 1
+H014 (5) 14 1 1 1
+H006 (12) 15 1 1 1
+H009 (11) 16 1 0 1
+H007 (3) 17 1 0 1
+H012 (10) 18 1 1 1
+H011 (13) 18 0 0 0
+H013 (6) 19 0 0 0
+H001 (7) 21 2 2 2
+ 20 21 1 1 1
+H003 (8) 20 1 1 1
+H005 (9) 20 1 1 1
+H010 (2) 22 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /---------------- H002
+ |
+ | /-------- H008
+ /------15------14
+ | | \-------- H014
+ | |
+ /------16 \---------------- H006
+ | |
+ /-------17 \------------------------ H009
+ | |
+ | \-------------------------------- H007
+ /------18
+ | +----------------------------------------- H012
+ | |
+ /------19 \----------------------------------------- H011
+ | |
+ | \------------------------------------------------- H013
+ |
+ /------21--------------------------------------------------------- H001
+ | |
+ | | /-------- H003
+-------22 \-----------------------------------------------20
+ | \-------- H005
+ |
+ \----------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_19 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_19 --> node_18 8 1 1.000 2 ==> 1
+ 9 1 0.500 2 ==> 1
+ 10 1 0.500 2 ==> 1
+ node_17 --> node_16 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_15 --> node_14 9 1 0.500 1 ==> 2
+ node_14 --> H008 11 1 0.333 2 ==> 1
+ node_14 --> H014 10 1 0.500 1 ==> 2
+ node_15 --> H006 11 1 0.333 2 ==> 1
+ node_16 --> H009 12 1 0.333 2 --> 1
+ node_17 --> H007 12 1 0.333 2 --> 1
+ node_18 --> H012 11 1 0.333 2 ==> 1
+ node_21 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_21 --> node_20 3 1 1.000 2 ==> 1
+ node_20 --> H003 4 1 1.000 2 ==> 1
+ node_20 --> H005 12 1 0.333 2 ==> 1
+ node_22 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 28:
+
+Branch lengths and linkages for tree #28
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 22 root 0 0 0
+ 21 22 0 0 0
+ 19 21 2 2 2
+ 18 19 3 3 3
+ 17 18 0 0 1
+ 16 17 2 2 2
+ 15 16 0 0 1
+H002 (1) 15 0 0 0
+ 14 15 1 1 1
+H008 (4) 14 1 1 1
+H006 (12) 14 0 0 0
+H014 (5) 15 2 2 2
+H009 (11) 16 1 0 1
+H007 (3) 17 1 0 1
+H012 (10) 18 1 1 1
+H011 (13) 18 0 0 0
+H013 (6) 19 0 0 0
+H001 (7) 21 2 2 2
+ 20 21 1 1 1
+H003 (8) 20 1 1 1
+H005 (9) 20 1 1 1
+H010 (2) 22 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /---------------- H002
+ |
+ | /-------- H008
+ /------15------14
+ | | \-------- H006
+ | |
+ /------16 \---------------- H014
+ | |
+ /-------17 \------------------------ H009
+ | |
+ | \-------------------------------- H007
+ /------18
+ | +----------------------------------------- H012
+ | |
+ /------19 \----------------------------------------- H011
+ | |
+ | \------------------------------------------------- H013
+ |
+ /------21--------------------------------------------------------- H001
+ | |
+ | | /-------- H003
+-------22 \-----------------------------------------------20
+ | \-------- H005
+ |
+ \----------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_19 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_19 --> node_18 8 1 1.000 2 ==> 1
+ 9 1 0.333 2 ==> 1
+ 10 1 0.500 2 ==> 1
+ node_17 --> node_16 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_15 --> node_14 11 1 0.500 2 ==> 1
+ node_14 --> H008 9 1 0.333 1 ==> 2
+ node_15 --> H014 9 1 0.333 1 ==> 2
+ 10 1 0.500 1 ==> 2
+ node_16 --> H009 12 1 0.333 2 --> 1
+ node_17 --> H007 12 1 0.333 2 --> 1
+ node_18 --> H012 11 1 0.500 2 ==> 1
+ node_21 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_21 --> node_20 3 1 1.000 2 ==> 1
+ node_20 --> H003 4 1 1.000 2 ==> 1
+ node_20 --> H005 12 1 0.333 2 ==> 1
+ node_22 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 29:
+
+Branch lengths and linkages for tree #29
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 22 23 0 0 0
+ 20 22 2 2 2
+ 19 20 3 3 3
+ 18 19 0 0 1
+ 17 18 2 2 2
+ 16 17 0 0 1
+H002 (1) 16 0 0 0
+ 15 16 0 0 1
+ 14 15 1 1 1
+H008 (4) 14 1 0 1
+H006 (12) 14 0 0 1
+H014 (5) 15 2 1 2
+H009 (11) 17 1 0 1
+H007 (3) 18 1 0 1
+H012 (10) 19 1 1 1
+H011 (13) 19 0 0 0
+H013 (6) 20 0 0 0
+H001 (7) 22 2 2 2
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (9) 21 1 1 1
+H010 (2) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /---------------------- H002
+ |
+ | /------- H008
+ /-----16 /------14
+ | | | \------- H006
+ | \-----15
+ /-----17 \--------------- H014
+ | |
+ /------18 \----------------------------- H009
+ | |
+ | \------------------------------------ H007
+ /-----19
+ | +-------------------------------------------- H012
+ | |
+ /-----20 \-------------------------------------------- H011
+ | |
+ | \--------------------------------------------------- H013
+ |
+ /------22---------------------------------------------------------- H001
+ | |
+ | | /------- H003
+------23 \-------------------------------------------------21
+ | \------- H005
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_20 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_20 --> node_19 8 1 1.000 2 ==> 1
+ 9 1 0.333 2 ==> 1
+ 10 1 0.500 2 ==> 1
+ node_18 --> node_17 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_15 --> node_14 11 1 0.500 2 ==> 1
+ node_14 --> H008 9 1 0.333 1 --> 2
+ node_15 --> H014 9 1 0.333 1 --> 2
+ 10 1 0.500 1 ==> 2
+ node_17 --> H009 12 1 0.333 2 --> 1
+ node_18 --> H007 12 1 0.333 2 --> 1
+ node_19 --> H012 11 1 0.500 2 ==> 1
+ node_22 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 30:
+
+Branch lengths and linkages for tree #30
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 24 root 0 0 0
+ 23 24 0 0 0
+ 21 23 2 2 2
+ 20 21 3 3 3
+ 19 20 1 1 2
+ 18 19 1 1 1
+ 17 18 0 0 1
+H002 (1) 17 0 0 0
+ 16 17 0 0 1
+ 15 16 2 2 2
+H007 (3) 15 1 0 1
+ 14 15 0 0 1
+H012 (10) 14 1 1 1
+H011 (13) 14 0 0 0
+H009 (11) 16 1 0 1
+H006 (12) 18 1 0 1
+H008 (4) 19 1 0 1
+H014 (5) 20 0 0 0
+H013 (6) 21 0 0 0
+H001 (7) 23 2 2 2
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (9) 22 1 1 1
+H010 (2) 24 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /--------------------------- H002
+ |
+ | /------------- H007
+ /----17 |
+ | | /-----15 /------- H012
+ | | | \----14
+ | \-----16 \------- H011
+ /-----18 |
+ | | \-------------------- H009
+ | |
+ /----19 \--------------------------------- H006
+ | |
+ /-----20 \---------------------------------------- H008
+ | |
+ /-----21 \---------------------------------------------- H014
+ | |
+ | \----------------------------------------------------- H013
+ |
+ /----23------------------------------------------------------------ H001
+ | |
+ | | /------- H003
+------24 \---------------------------------------------------22
+ | \------- H005
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_21 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_21 --> node_20 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_20 --> node_19 10 1 1.000 2 ==> 1
+ node_19 --> node_18 9 1 1.000 2 ==> 1
+ node_16 --> node_15 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 --> 1
+ node_14 --> H012 11 1 0.333 2 ==> 1
+ node_16 --> H009 12 1 0.333 2 --> 1
+ node_18 --> H006 11 1 0.333 2 --> 1
+ node_19 --> H008 11 1 0.333 2 --> 1
+ node_23 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+ node_24 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 31:
+
+Branch lengths and linkages for tree #31
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 24 root 0 0 0
+ 23 24 0 0 0
+ 21 23 2 2 2
+ 20 21 3 3 3
+ 19 20 1 1 2
+ 18 19 1 1 1
+ 17 18 0 0 1
+H002 (1) 17 0 0 0
+ 16 17 0 0 1
+ 15 16 2 2 2
+H007 (3) 15 1 0 1
+ 14 15 0 0 1
+H012 (10) 14 1 1 1
+H011 (13) 14 0 0 0
+H009 (11) 16 1 0 1
+H006 (12) 18 1 0 1
+H008 (4) 19 1 0 1
+H014 (5) 20 0 0 0
+H001 (7) 21 0 0 0
+H013 (6) 23 2 2 2
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (9) 22 1 1 1
+H010 (2) 24 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /--------------------------- H002
+ |
+ | /------------- H007
+ /----17 |
+ | | /-----15 /------- H012
+ | | | \----14
+ | \-----16 \------- H011
+ /-----18 |
+ | | \-------------------- H009
+ | |
+ /----19 \--------------------------------- H006
+ | |
+ /-----20 \---------------------------------------- H008
+ | |
+ /-----21 \---------------------------------------------- H014
+ | |
+ | \----------------------------------------------------- H001
+ |
+ /----23------------------------------------------------------------ H013
+ | |
+ | | /------- H003
+------24 \---------------------------------------------------22
+ | \------- H005
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_21 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_21 --> node_20 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_20 --> node_19 10 1 1.000 2 ==> 1
+ node_19 --> node_18 9 1 1.000 2 ==> 1
+ node_16 --> node_15 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 --> 1
+ node_14 --> H012 11 1 0.333 2 ==> 1
+ node_16 --> H009 12 1 0.333 2 --> 1
+ node_18 --> H006 11 1 0.333 2 --> 1
+ node_19 --> H008 11 1 0.333 2 --> 1
+ node_23 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+ node_24 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 32:
+
+Branch lengths and linkages for tree #32
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 22 23 0 0 0
+ 20 22 2 2 2
+ 19 20 1 1 1
+ 18 19 2 2 2
+ 17 18 0 0 1
+ 16 17 2 2 2
+ 15 16 0 0 1
+H002 (1) 15 0 0 0
+ 14 15 1 1 1
+H008 (4) 14 1 1 1
+H006 (12) 14 0 0 0
+H009 (11) 16 1 0 1
+H007 (3) 17 1 0 1
+H012 (10) 18 1 1 1
+H011 (13) 18 0 0 0
+H014 (5) 19 2 2 2
+H013 (6) 20 0 0 0
+H001 (7) 22 2 2 2
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (9) 21 1 1 1
+H010 (2) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /--------------- H002
+ |
+ /-----15 /------- H008
+ | \------14
+ /-----16 \------- H006
+ | |
+ /-----17 \---------------------- H009
+ | |
+ | \----------------------------- H007
+ /------18
+ | +------------------------------------ H012
+ | |
+ /-----19 \------------------------------------ H011
+ | |
+ /-----20 \-------------------------------------------- H014
+ | |
+ | \--------------------------------------------------- H013
+ |
+ /------22---------------------------------------------------------- H001
+ | |
+ | | /------- H003
+------23 \-------------------------------------------------21
+ | \------- H005
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_20 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_20 --> node_19 8 1 1.000 2 ==> 1
+ node_19 --> node_18 9 1 0.500 2 ==> 1
+ 10 1 1.000 2 ==> 1
+ node_17 --> node_16 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_15 --> node_14 11 1 0.500 2 ==> 1
+ node_14 --> H008 9 1 0.500 1 ==> 2
+ node_16 --> H009 12 1 0.333 2 --> 1
+ node_17 --> H007 12 1 0.333 2 --> 1
+ node_18 --> H012 11 1 0.500 2 ==> 1
+ node_19 --> H014 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_22 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 33:
+
+Branch lengths and linkages for tree #33
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 22 23 0 0 0
+ 20 22 2 2 2
+ 19 20 3 3 3
+ 18 19 1 1 1
+ 17 18 2 2 2
+ 16 17 0 0 1
+ 15 16 1 1 1
+ 14 15 0 0 1
+H002 (1) 14 0 0 0
+H009 (11) 14 1 1 1
+H014 (5) 15 2 1 2
+H008 (4) 16 1 0 1
+H006 (12) 17 0 0 0
+H012 (10) 18 0 0 0
+H007 (3) 19 1 1 1
+H011 (13) 19 0 0 0
+H013 (6) 20 0 0 0
+H001 (7) 22 2 2 2
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (9) 21 1 1 1
+H010 (2) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /------- H002
+ /------14
+ | \------- H009
+ /-----15
+ | \--------------- H014
+ /-----16
+ | \---------------------- H008
+ /-----17
+ | \----------------------------- H006
+ /------18
+ | \------------------------------------ H012
+ |
+ /-----19-------------------------------------------- H007
+ | |
+ /-----20 \-------------------------------------------- H011
+ | |
+ | \--------------------------------------------------- H013
+ |
+ /------22---------------------------------------------------------- H001
+ | |
+ | | /------- H003
+------23 \-------------------------------------------------21
+ | \------- H005
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_20 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_20 --> node_19 8 1 1.000 2 ==> 1
+ 9 1 0.333 2 ==> 1
+ 10 1 0.500 2 ==> 1
+ node_19 --> node_18 11 1 0.500 2 ==> 1
+ node_18 --> node_17 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_16 --> node_15 11 1 0.500 1 ==> 2
+ node_14 --> H009 12 1 0.333 2 ==> 1
+ node_15 --> H014 9 1 0.333 1 --> 2
+ 10 1 0.500 1 ==> 2
+ node_16 --> H008 9 1 0.333 1 --> 2
+ node_19 --> H007 12 1 0.333 2 ==> 1
+ node_22 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 34:
+
+Branch lengths and linkages for tree #34
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 22 root 0 0 0
+ 21 22 0 0 0
+ 19 21 2 2 2
+ 18 19 3 3 3
+ 17 18 0 0 1
+ 16 17 2 2 2
+ 15 16 0 0 1
+H002 (1) 15 0 0 0
+ 14 15 1 1 1
+H008 (4) 14 1 1 1
+H014 (5) 14 1 1 1
+H009 (11) 15 1 1 1
+H006 (12) 16 1 0 1
+H012 (10) 17 1 0 1
+H007 (3) 18 1 1 1
+H011 (13) 18 0 0 0
+H013 (6) 19 0 0 0
+H001 (7) 21 2 2 2
+ 20 21 1 1 1
+H003 (8) 20 1 1 1
+H005 (9) 20 1 1 1
+H010 (2) 22 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /---------------- H002
+ |
+ | /-------- H008
+ /------15------14
+ | | \-------- H014
+ | |
+ /------16 \---------------- H009
+ | |
+ /-------17 \------------------------ H006
+ | |
+ | \-------------------------------- H012
+ /------18
+ | +----------------------------------------- H007
+ | |
+ /------19 \----------------------------------------- H011
+ | |
+ | \------------------------------------------------- H013
+ |
+ /------21--------------------------------------------------------- H001
+ | |
+ | | /-------- H003
+-------22 \-----------------------------------------------20
+ | \-------- H005
+ |
+ \----------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_19 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_19 --> node_18 8 1 1.000 2 ==> 1
+ 9 1 0.500 2 ==> 1
+ 10 1 0.500 2 ==> 1
+ node_17 --> node_16 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_15 --> node_14 9 1 0.500 1 ==> 2
+ node_14 --> H008 11 1 0.333 2 ==> 1
+ node_14 --> H014 10 1 0.500 1 ==> 2
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_16 --> H006 11 1 0.333 2 --> 1
+ node_17 --> H012 11 1 0.333 2 --> 1
+ node_18 --> H007 12 1 0.333 2 ==> 1
+ node_21 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_21 --> node_20 3 1 1.000 2 ==> 1
+ node_20 --> H003 4 1 1.000 2 ==> 1
+ node_20 --> H005 12 1 0.333 2 ==> 1
+ node_22 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 35:
+
+Branch lengths and linkages for tree #35
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 24 root 0 0 0
+ 23 24 0 0 0
+ 21 23 2 2 2
+ 20 21 3 3 3
+ 19 20 1 1 2
+ 18 19 1 1 1
+ 17 18 0 0 1
+ 14 17 0 0 1
+H002 (1) 14 0 0 0
+H009 (11) 14 1 1 1
+ 16 17 2 2 2
+ 15 16 0 0 1
+H007 (3) 15 1 1 1
+H011 (13) 15 0 0 0
+H012 (10) 16 1 0 1
+H006 (12) 18 1 0 1
+H008 (4) 19 1 0 1
+H014 (5) 20 0 0 0
+H013 (6) 21 0 0 0
+H001 (7) 23 2 2 2
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (9) 22 1 1 1
+H010 (2) 24 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /------- H002
+ /-------------14
+ | \------- H009
+ |
+ /-----17 /------- H007
+ | | /------15
+ | | | \------- H011
+ /-----18 \-----16
+ | | \--------------- H012
+ | |
+ /------19 \----------------------------- H006
+ | |
+ /-----20 \------------------------------------ H008
+ | |
+ /-----21 \-------------------------------------------- H014
+ | |
+ | \--------------------------------------------------- H013
+ |
+ /------23---------------------------------------------------------- H001
+ | |
+ | | /------- H003
+------24 \-------------------------------------------------22
+ | \------- H005
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_21 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_21 --> node_20 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_20 --> node_19 10 1 1.000 2 ==> 1
+ node_19 --> node_18 9 1 1.000 2 ==> 1
+ node_14 --> H009 12 1 0.333 2 ==> 1
+ node_17 --> node_16 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ node_16 --> H012 11 1 0.333 2 --> 1
+ node_18 --> H006 11 1 0.333 2 --> 1
+ node_19 --> H008 11 1 0.333 2 --> 1
+ node_23 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+ node_24 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 36:
+
+Branch lengths and linkages for tree #36
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 22 root 0 0 0
+ 21 22 0 0 0
+ 19 21 2 2 2
+ 18 19 3 3 3
+ 17 18 0 0 1
+ 16 17 2 2 2
+ 14 16 0 0 1
+H002 (1) 14 0 0 0
+H014 (5) 14 2 2 2
+H009 (11) 14 1 1 1
+ 15 16 1 0 1
+H008 (4) 15 1 1 1
+H006 (12) 15 0 0 0
+H012 (10) 17 1 0 1
+H007 (3) 18 1 1 1
+H011 (13) 18 0 0 0
+H013 (6) 19 0 0 0
+H001 (7) 21 2 2 2
+ 20 21 1 1 1
+H003 (8) 20 1 1 1
+H005 (9) 20 1 1 1
+H010 (2) 22 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /--------- H002
+ |
+ /-------14--------- H014
+ | |
+ | \--------- H009
+ /-------16
+ | | /--------- H008
+ | \-------15
+ /--------17 \--------- H006
+ | |
+ | \--------------------------- H012
+ /-------18
+ | +------------------------------------- H007
+ | |
+ /-------19 \------------------------------------- H011
+ | |
+ | \---------------------------------------------- H013
+ |
+ /-------21------------------------------------------------------- H001
+ | |
+ | | /--------- H003
+--------22 \--------------------------------------------20
+ | \--------- H005
+ |
+ \---------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_19 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_19 --> node_18 8 1 1.000 2 ==> 1
+ 9 1 0.333 2 ==> 1
+ 10 1 0.500 2 ==> 1
+ node_17 --> node_16 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_14 --> H014 9 1 0.333 1 ==> 2
+ 10 1 0.500 1 ==> 2
+ node_14 --> H009 12 1 0.333 2 ==> 1
+ node_16 --> node_15 11 1 0.500 2 --> 1
+ node_15 --> H008 9 1 0.333 1 ==> 2
+ node_17 --> H012 11 1 0.500 2 --> 1
+ node_18 --> H007 12 1 0.333 2 ==> 1
+ node_21 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_21 --> node_20 3 1 1.000 2 ==> 1
+ node_20 --> H003 4 1 1.000 2 ==> 1
+ node_20 --> H005 12 1 0.333 2 ==> 1
+ node_22 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 37:
+
+Branch lengths and linkages for tree #37
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 22 23 0 0 0
+ 20 22 2 2 2
+ 19 20 1 1 1
+ 18 19 2 2 2
+ 17 18 0 0 1
+ 16 17 2 2 2
+ 14 16 0 0 1
+H002 (1) 14 0 0 0
+H009 (11) 14 1 1 1
+ 15 16 1 0 1
+H008 (4) 15 1 1 1
+H006 (12) 15 0 0 0
+H012 (10) 17 1 0 1
+H007 (3) 18 1 1 1
+H011 (13) 18 0 0 0
+H014 (5) 19 2 2 2
+H013 (6) 20 0 0 0
+H001 (7) 22 2 2 2
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (9) 21 1 1 1
+H010 (2) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /-------- H002
+ /------14
+ | \-------- H009
+ /------16
+ | | /-------- H008
+ | \------15
+ /------17 \-------- H006
+ | |
+ | \------------------------ H012
+ /-------18
+ | +-------------------------------- H007
+ | |
+ /------19 \-------------------------------- H011
+ | |
+ /------20 \----------------------------------------- H014
+ | |
+ | \------------------------------------------------- H013
+ |
+ /------22--------------------------------------------------------- H001
+ | |
+ | | /-------- H003
+-------23 \-----------------------------------------------21
+ | \-------- H005
+ |
+ \----------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_20 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_20 --> node_19 8 1 1.000 2 ==> 1
+ node_19 --> node_18 9 1 0.500 2 ==> 1
+ 10 1 1.000 2 ==> 1
+ node_17 --> node_16 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_14 --> H009 12 1 0.333 2 ==> 1
+ node_16 --> node_15 11 1 0.500 2 --> 1
+ node_15 --> H008 9 1 0.500 1 ==> 2
+ node_17 --> H012 11 1 0.500 2 --> 1
+ node_18 --> H007 12 1 0.333 2 ==> 1
+ node_19 --> H014 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_22 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 38:
+
+Branch lengths and linkages for tree #38
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 24 root 0 0 0
+ 23 24 0 0 0
+ 21 23 2 2 2
+ 20 21 3 3 3
+ 19 20 1 1 2
+ 18 19 1 1 1
+ 17 18 0 0 1
+ 14 17 0 0 1
+H002 (1) 14 0 0 0
+H009 (11) 14 1 1 1
+ 16 17 2 2 2
+ 15 16 0 0 1
+H007 (3) 15 1 1 1
+H011 (13) 15 0 0 0
+H012 (10) 16 1 0 1
+H006 (12) 18 1 0 1
+H008 (4) 19 1 0 1
+H014 (5) 20 0 0 0
+H001 (7) 21 0 0 0
+H013 (6) 23 2 2 2
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (9) 22 1 1 1
+H010 (2) 24 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /------- H002
+ /-------------14
+ | \------- H009
+ |
+ /-----17 /------- H007
+ | | /------15
+ | | | \------- H011
+ /-----18 \-----16
+ | | \--------------- H012
+ | |
+ /------19 \----------------------------- H006
+ | |
+ /-----20 \------------------------------------ H008
+ | |
+ /-----21 \-------------------------------------------- H014
+ | |
+ | \--------------------------------------------------- H001
+ |
+ /------23---------------------------------------------------------- H013
+ | |
+ | | /------- H003
+------24 \-------------------------------------------------22
+ | \------- H005
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_21 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_21 --> node_20 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_20 --> node_19 10 1 1.000 2 ==> 1
+ node_19 --> node_18 9 1 1.000 2 ==> 1
+ node_14 --> H009 12 1 0.333 2 ==> 1
+ node_17 --> node_16 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ node_16 --> H012 11 1 0.333 2 --> 1
+ node_18 --> H006 11 1 0.333 2 --> 1
+ node_19 --> H008 11 1 0.333 2 --> 1
+ node_23 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+ node_24 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 39:
+
+Branch lengths and linkages for tree #39
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 22 root 0 0 0
+ 21 22 0 0 0
+ 19 21 2 2 2
+ 18 19 1 1 2
+ 16 18 2 2 2
+ 15 16 1 0 1
+ 14 15 1 1 1
+H002 (1) 14 0 0 0
+H009 (11) 14 1 1 1
+H006 (12) 14 1 1 1
+H008 (4) 15 1 1 1
+H014 (5) 16 0 0 1
+ 17 18 2 1 2
+H007 (3) 17 1 1 1
+H012 (10) 17 1 1 1
+H011 (13) 17 0 0 0
+H013 (6) 19 0 0 0
+H001 (7) 21 2 2 2
+ 20 21 1 1 1
+H003 (8) 20 1 1 1
+H005 (9) 20 1 1 1
+H010 (2) 22 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /--------- H002
+ |
+ /-------14--------- H009
+ | |
+ /-------15 \--------- H006
+ | |
+ /--------16 \------------------ H008
+ | |
+ | \--------------------------- H014
+ /-------18
+ | | /--------- H007
+ | | |
+ | \--------------------------17--------- H012
+ /-------19 |
+ | | \--------- H011
+ | |
+ | \---------------------------------------------- H013
+ /-------21
+ | +------------------------------------------------------- H001
+ | |
+ | | /--------- H003
+--------22 \--------------------------------------------20
+ | \--------- H005
+ |
+ \---------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_19 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_19 --> node_18 8 1 1.000 2 ==> 1
+ node_18 --> node_16 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_16 --> node_15 10 1 0.500 2 --> 1
+ node_15 --> node_14 9 1 0.500 2 ==> 1
+ node_14 --> H009 12 1 0.333 2 ==> 1
+ node_14 --> H006 11 1 0.333 2 ==> 1
+ node_15 --> H008 11 1 0.333 2 ==> 1
+ node_18 --> node_17 9 1 0.500 2 ==> 1
+ 10 1 0.500 2 --> 1
+ node_17 --> H007 12 1 0.333 2 ==> 1
+ node_17 --> H012 11 1 0.333 2 ==> 1
+ node_21 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_21 --> node_20 3 1 1.000 2 ==> 1
+ node_20 --> H003 4 1 1.000 2 ==> 1
+ node_20 --> H005 12 1 0.333 2 ==> 1
+ node_22 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 40:
+
+Branch lengths and linkages for tree #40
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 22 root 0 0 0
+ 21 22 0 0 0
+ 19 21 2 2 2
+ 18 19 1 1 3
+ 16 18 2 2 2
+ 15 16 2 0 2
+H002 (1) 15 0 0 0
+ 14 15 1 1 1
+H008 (4) 14 1 1 1
+H006 (12) 14 0 0 0
+H009 (11) 15 1 1 1
+H014 (5) 16 0 0 2
+ 17 18 2 0 2
+H007 (3) 17 1 1 1
+H012 (10) 17 1 1 1
+H011 (13) 17 0 0 0
+H013 (6) 19 0 0 0
+H001 (7) 21 2 2 2
+ 20 21 1 1 1
+H003 (8) 20 1 1 1
+H005 (9) 20 1 1 1
+H010 (2) 22 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /------------------ H002
+ |
+ | /--------- H008
+ /-------15-------14
+ | | \--------- H006
+ | |
+ /--------16 \------------------ H009
+ | |
+ | \--------------------------- H014
+ /-------18
+ | | /--------- H007
+ | | |
+ | \--------------------------17--------- H012
+ /-------19 |
+ | | \--------- H011
+ | |
+ | \---------------------------------------------- H013
+ /-------21
+ | +------------------------------------------------------- H001
+ | |
+ | | /--------- H003
+--------22 \--------------------------------------------20
+ | \--------- H005
+ |
+ \---------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_19 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_19 --> node_18 8 1 1.000 2 ==> 1
+ node_18 --> node_16 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_16 --> node_15 9 1 0.333 2 --> 1
+ 10 1 0.500 2 --> 1
+ node_15 --> node_14 11 1 0.500 2 ==> 1
+ node_14 --> H008 9 1 0.333 1 ==> 2
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_18 --> node_17 9 1 0.333 2 --> 1
+ 10 1 0.500 2 --> 1
+ node_17 --> H007 12 1 0.333 2 ==> 1
+ node_17 --> H012 11 1 0.500 2 ==> 1
+ node_21 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_21 --> node_20 3 1 1.000 2 ==> 1
+ node_20 --> H003 4 1 1.000 2 ==> 1
+ node_20 --> H005 12 1 0.333 2 ==> 1
+ node_22 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 41:
+
+Branch lengths and linkages for tree #41
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 22 23 0 0 0
+ 20 22 2 2 2
+ 19 20 2 2 3
+ 17 19 2 2 2
+ 14 17 1 0 1
+H002 (1) 14 0 0 0
+H009 (11) 14 1 1 1
+ 16 17 0 0 1
+ 15 16 1 1 1
+H008 (4) 15 0 0 1
+H006 (12) 15 1 0 1
+H014 (5) 16 1 1 2
+ 18 19 1 0 1
+H007 (3) 18 1 1 1
+H012 (10) 18 1 1 1
+H011 (13) 18 0 0 0
+H013 (6) 20 0 0 0
+H001 (7) 22 2 2 2
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (9) 21 1 1 1
+H010 (2) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /--------- H002
+ /----------------14
+ | \--------- H009
+ |
+ /--------17 /--------- H008
+ | | /-------15
+ | | | \--------- H006
+ | \-------16
+ /-------19 \------------------ H014
+ | |
+ | | /--------- H007
+ | | |
+ /-------20 \--------------------------18--------- H012
+ | | |
+ | | \--------- H011
+ | |
+ | \---------------------------------------------- H013
+ /-------22
+ | +------------------------------------------------------- H001
+ | |
+ | | /--------- H003
+--------23 \--------------------------------------------21
+ | \--------- H005
+ |
+ \---------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_20 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_20 --> node_19 8 1 1.000 2 ==> 1
+ 10 1 0.500 2 ==> 1
+ node_19 --> node_17 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_17 --> node_14 9 1 0.333 2 --> 1
+ node_14 --> H009 12 1 0.333 2 ==> 1
+ node_16 --> node_15 11 1 0.500 2 ==> 1
+ node_15 --> H006 9 1 0.333 2 --> 1
+ node_16 --> H014 10 1 0.500 1 ==> 2
+ node_19 --> node_18 9 1 0.333 2 --> 1
+ node_18 --> H007 12 1 0.333 2 ==> 1
+ node_18 --> H012 11 1 0.500 2 ==> 1
+ node_22 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 42:
+
+Branch lengths and linkages for tree #42
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 22 root 0 0 0
+ 21 22 0 0 0
+ 19 21 2 2 2
+ 18 19 2 2 3
+ 16 18 2 2 2
+ 14 16 1 0 1
+H002 (1) 14 0 0 0
+H009 (11) 14 1 1 1
+ 15 16 1 1 1
+H008 (4) 15 0 0 1
+H006 (12) 15 1 0 1
+H014 (5) 16 1 1 2
+ 17 18 1 0 1
+H007 (3) 17 1 1 1
+H012 (10) 17 1 1 1
+H011 (13) 17 0 0 0
+H013 (6) 19 0 0 0
+H001 (7) 21 2 2 2
+ 20 21 1 1 1
+H003 (8) 20 1 1 1
+H005 (9) 20 1 1 1
+H010 (2) 22 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /---------- H002
+ /---------14
+ | \---------- H009
+ |
+ | /---------- H008
+ /--------16---------15
+ | | \---------- H006
+ | |
+ | \--------------------- H014
+ /---------18
+ | | /---------- H007
+ | | |
+ | \-------------------17---------- H012
+ /--------19 |
+ | | \---------- H011
+ | |
+ | \------------------------------------------ H013
+ /---------21
+ | +---------------------------------------------------- H001
+ | |
+ | | /---------- H003
+---------22 \----------------------------------------20
+ | \---------- H005
+ |
+ \--------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_19 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_19 --> node_18 8 1 1.000 2 ==> 1
+ 10 1 0.500 2 ==> 1
+ node_18 --> node_16 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_16 --> node_14 9 1 0.333 2 --> 1
+ node_14 --> H009 12 1 0.333 2 ==> 1
+ node_16 --> node_15 11 1 0.500 2 ==> 1
+ node_15 --> H006 9 1 0.333 2 --> 1
+ node_16 --> H014 10 1 0.500 1 ==> 2
+ node_18 --> node_17 9 1 0.333 2 --> 1
+ node_17 --> H007 12 1 0.333 2 ==> 1
+ node_17 --> H012 11 1 0.500 2 ==> 1
+ node_21 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_21 --> node_20 3 1 1.000 2 ==> 1
+ node_20 --> H003 4 1 1.000 2 ==> 1
+ node_20 --> H005 12 1 0.333 2 ==> 1
+ node_22 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 43:
+
+Branch lengths and linkages for tree #43
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 22 root 0 0 0
+ 21 22 0 0 0
+ 19 21 2 2 2
+ 18 19 1 1 3
+ 17 18 2 2 2
+ 15 17 2 0 2
+H002 (1) 15 0 0 0
+ 14 15 1 1 1
+H008 (4) 14 1 1 1
+H006 (12) 14 0 0 0
+H009 (11) 15 1 1 1
+ 16 17 0 0 2
+H007 (3) 16 1 1 1
+H012 (10) 16 1 1 1
+H011 (13) 16 0 0 0
+H014 (5) 18 2 0 2
+H013 (6) 19 0 0 0
+H001 (7) 21 2 2 2
+ 20 21 1 1 1
+H003 (8) 20 1 1 1
+H005 (9) 20 1 1 1
+H010 (2) 22 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /------------------ H002
+ |
+ | /--------- H008
+ /-------15-------14
+ | | \--------- H006
+ | |
+ | \------------------ H009
+ /--------17
+ | | /--------- H007
+ | | |
+ | \----------------16--------- H012
+ /-------18 |
+ | | \--------- H011
+ | |
+ /-------19 \------------------------------------- H014
+ | |
+ | \---------------------------------------------- H013
+ |
+ /-------21------------------------------------------------------- H001
+ | |
+ | | /--------- H003
+--------22 \--------------------------------------------20
+ | \--------- H005
+ |
+ \---------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_19 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_19 --> node_18 8 1 1.000 2 ==> 1
+ node_18 --> node_17 9 1 0.500 2 ==> 1
+ 10 1 1.000 2 ==> 1
+ node_17 --> node_15 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ node_15 --> node_14 11 1 0.500 2 ==> 1
+ node_14 --> H008 9 1 0.500 1 ==> 2
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_16 --> H007 12 1 0.333 2 ==> 1
+ node_16 --> H012 11 1 0.500 2 ==> 1
+ node_18 --> H014 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ node_21 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_21 --> node_20 3 1 1.000 2 ==> 1
+ node_20 --> H003 4 1 1.000 2 ==> 1
+ node_20 --> H005 12 1 0.333 2 ==> 1
+ node_22 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 44:
+
+Branch lengths and linkages for tree #44
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 22 root 0 0 0
+ 21 22 0 0 0
+ 19 21 2 2 2
+ 18 19 1 1 1
+ 17 18 2 2 2
+ 16 17 1 1 1
+ 15 16 2 2 2
+ 14 15 1 1 1
+H002 (1) 14 0 0 0
+H009 (11) 14 1 1 1
+H008 (4) 15 1 1 1
+H006 (12) 15 0 0 0
+H012 (10) 16 0 0 0
+H007 (3) 17 1 1 1
+H011 (13) 17 0 0 0
+H014 (5) 18 2 2 2
+H013 (6) 19 0 0 0
+H001 (7) 21 2 2 2
+ 20 21 1 1 1
+H003 (8) 20 1 1 1
+H005 (9) 20 1 1 1
+H010 (2) 22 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /-------- H002
+ /------14
+ | \-------- H009
+ |
+ /------15---------------- H008
+ | |
+ /------16 \---------------- H006
+ | |
+ | \------------------------ H012
+ /-------17
+ | +-------------------------------- H007
+ | |
+ /------18 \-------------------------------- H011
+ | |
+ /------19 \----------------------------------------- H014
+ | |
+ | \------------------------------------------------- H013
+ |
+ /------21--------------------------------------------------------- H001
+ | |
+ | | /-------- H003
+-------22 \-----------------------------------------------20
+ | \-------- H005
+ |
+ \----------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_19 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_19 --> node_18 8 1 1.000 2 ==> 1
+ node_18 --> node_17 9 1 0.500 2 ==> 1
+ 10 1 1.000 2 ==> 1
+ node_17 --> node_16 11 1 0.500 2 ==> 1
+ node_16 --> node_15 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_15 --> node_14 11 1 0.500 1 ==> 2
+ node_14 --> H009 12 1 0.333 2 ==> 1
+ node_15 --> H008 9 1 0.500 1 ==> 2
+ node_17 --> H007 12 1 0.333 2 ==> 1
+ node_18 --> H014 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_21 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_21 --> node_20 3 1 1.000 2 ==> 1
+ node_20 --> H003 4 1 1.000 2 ==> 1
+ node_20 --> H005 12 1 0.333 2 ==> 1
+ node_22 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 45:
+
+Branch lengths and linkages for tree #45
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 21 root 0 0 0
+ 20 21 0 0 0
+ 18 20 2 2 2
+ 17 18 3 3 3
+ 16 17 1 1 1
+ 15 16 1 1 1
+H002 (1) 15 0 0 0
+ 14 15 2 2 2
+H007 (3) 14 1 1 1
+H012 (10) 14 1 1 1
+H011 (13) 14 0 0 0
+H009 (11) 15 1 1 1
+H006 (12) 15 1 1 1
+H008 (4) 16 1 1 1
+H014 (5) 17 0 0 0
+H013 (6) 18 0 0 0
+H001 (7) 20 2 2 2
+ 19 20 1 1 1
+H003 (8) 19 1 1 1
+H005 (9) 19 1 1 1
+H010 (2) 21 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /------------------ H002
+ |
+ | /--------- H007
+ | |
+ +-------14--------- H012
+ /-------15 |
+ | | \--------- H011
+ | |
+ | +------------------ H009
+ /--------16 |
+ | | \------------------ H006
+ | |
+ /-------17 \--------------------------- H008
+ | |
+ /-------18 \------------------------------------- H014
+ | |
+ | \---------------------------------------------- H013
+ |
+ /-------20------------------------------------------------------- H001
+ | |
+ | | /--------- H003
+--------21 \--------------------------------------------19
+ | \--------- H005
+ |
+ \---------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_20 --> node_18 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_18 --> node_17 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_17 --> node_16 10 1 1.000 2 ==> 1
+ node_16 --> node_15 9 1 1.000 2 ==> 1
+ node_15 --> node_14 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_14 --> H007 12 1 0.333 2 ==> 1
+ node_14 --> H012 11 1 0.333 2 ==> 1
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_15 --> H006 11 1 0.333 2 ==> 1
+ node_16 --> H008 11 1 0.333 2 ==> 1
+ node_20 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_20 --> node_19 3 1 1.000 2 ==> 1
+ node_19 --> H003 4 1 1.000 2 ==> 1
+ node_19 --> H005 12 1 0.333 2 ==> 1
+ node_21 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 46:
+
+Branch lengths and linkages for tree #46
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 22 23 0 0 0
+ 20 22 2 2 2
+ 19 20 3 3 3
+ 18 19 1 1 2
+ 17 18 1 1 1
+ 14 17 0 0 1
+H002 (1) 14 0 0 0
+H009 (11) 14 1 1 1
+ 16 17 2 2 2
+ 15 16 0 0 1
+H007 (3) 15 1 1 1
+H011 (13) 15 0 0 0
+H012 (10) 16 1 0 1
+H006 (12) 17 1 0 1
+H008 (4) 18 1 0 1
+H014 (5) 19 0 0 0
+H013 (6) 20 0 0 0
+H001 (7) 22 2 2 2
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (9) 21 1 1 1
+H010 (2) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /-------- H002
+ /--------------14
+ | \-------- H009
+ |
+ | /-------- H007
+ | /------15
+ /------17 | \-------- H011
+ | +------16
+ | | \---------------- H012
+ /-------18 |
+ | | \------------------------ H006
+ | |
+ /------19 \-------------------------------- H008
+ | |
+ /------20 \----------------------------------------- H014
+ | |
+ | \------------------------------------------------- H013
+ |
+ /------22--------------------------------------------------------- H001
+ | |
+ | | /-------- H003
+-------23 \-----------------------------------------------21
+ | \-------- H005
+ |
+ \----------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_20 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_20 --> node_19 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_19 --> node_18 10 1 1.000 2 ==> 1
+ node_18 --> node_17 9 1 1.000 2 ==> 1
+ node_14 --> H009 12 1 0.333 2 ==> 1
+ node_17 --> node_16 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ node_16 --> H012 11 1 0.333 2 --> 1
+ node_17 --> H006 11 1 0.333 2 --> 1
+ node_18 --> H008 11 1 0.333 2 --> 1
+ node_22 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 47:
+
+Branch lengths and linkages for tree #47
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 24 root 0 0 0
+ 23 24 0 0 0
+ 21 23 2 2 2
+ 20 21 3 3 3
+ 19 20 1 1 2
+ 18 19 1 1 1
+ 14 18 0 0 1
+H002 (1) 14 0 0 0
+H009 (11) 14 1 1 1
+ 17 18 0 0 1
+ 16 17 2 2 2
+ 15 16 0 0 1
+H007 (3) 15 1 1 1
+H011 (13) 15 0 0 0
+H012 (10) 16 1 0 1
+H006 (12) 17 1 0 1
+H008 (4) 19 1 0 1
+H014 (5) 20 0 0 0
+H013 (6) 21 0 0 0
+H001 (7) 23 2 2 2
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (9) 22 1 1 1
+H010 (2) 24 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /------- H002
+ /--------------------14
+ | \------- H009
+ |
+ | /------- H007
+ /-----18 /------15
+ | | | \------- H011
+ | | /-----16
+ | | | \--------------- H012
+ /------19 \-----17
+ | | \---------------------- H006
+ | |
+ /-----20 \------------------------------------ H008
+ | |
+ /-----21 \-------------------------------------------- H014
+ | |
+ | \--------------------------------------------------- H013
+ |
+ /------23---------------------------------------------------------- H001
+ | |
+ | | /------- H003
+------24 \-------------------------------------------------22
+ | \------- H005
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_21 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_21 --> node_20 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_20 --> node_19 10 1 1.000 2 ==> 1
+ node_19 --> node_18 9 1 1.000 2 ==> 1
+ node_14 --> H009 12 1 0.333 2 ==> 1
+ node_17 --> node_16 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ node_16 --> H012 11 1 0.333 2 --> 1
+ node_17 --> H006 11 1 0.333 2 --> 1
+ node_19 --> H008 11 1 0.333 2 --> 1
+ node_23 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+ node_24 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 48:
+
+Branch lengths and linkages for tree #48
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 22 23 0 0 0
+ 20 22 2 2 2
+ 19 20 1 1 3
+ 17 19 2 2 2
+ 16 17 1 0 2
+ 14 16 1 0 1
+H002 (1) 14 0 0 0
+H009 (11) 14 1 1 1
+ 15 16 1 1 1
+H008 (4) 15 0 0 1
+H006 (12) 15 1 0 1
+H014 (5) 17 0 0 2
+ 18 19 2 0 2
+H007 (3) 18 1 1 1
+H012 (10) 18 1 1 1
+H011 (13) 18 0 0 0
+H013 (6) 20 0 0 0
+H001 (7) 22 2 2 2
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (9) 21 1 1 1
+H010 (2) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /--------- H002
+ /-------14
+ | \--------- H009
+ /-------16
+ | | /--------- H008
+ | \-------15
+ /--------17 \--------- H006
+ | |
+ | \--------------------------- H014
+ /-------19
+ | | /--------- H007
+ | | |
+ | \--------------------------18--------- H012
+ /-------20 |
+ | | \--------- H011
+ | |
+ | \---------------------------------------------- H013
+ /-------22
+ | +------------------------------------------------------- H001
+ | |
+ | | /--------- H003
+--------23 \--------------------------------------------21
+ | \--------- H005
+ |
+ \---------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_20 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_20 --> node_19 8 1 1.000 2 ==> 1
+ node_19 --> node_17 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_17 --> node_16 10 1 0.500 2 --> 1
+ node_16 --> node_14 9 1 0.333 2 --> 1
+ node_14 --> H009 12 1 0.333 2 ==> 1
+ node_16 --> node_15 11 1 0.500 2 ==> 1
+ node_15 --> H006 9 1 0.333 2 --> 1
+ node_19 --> node_18 9 1 0.333 2 --> 1
+ 10 1 0.500 2 --> 1
+ node_18 --> H007 12 1 0.333 2 ==> 1
+ node_18 --> H012 11 1 0.500 2 ==> 1
+ node_22 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 49:
+
+Branch lengths and linkages for tree #49
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 21 root 0 0 0
+ 20 21 0 0 0
+ 18 20 2 2 2
+ 17 18 3 3 3
+ 16 17 1 1 1
+ 15 16 2 2 2
+ 14 15 1 1 1
+H002 (1) 14 0 0 0
+H014 (5) 14 2 2 2
+H009 (11) 14 1 1 1
+H008 (4) 15 1 1 1
+H006 (12) 15 0 0 0
+H012 (10) 16 0 0 0
+H007 (3) 17 1 1 1
+H011 (13) 17 0 0 0
+H013 (6) 18 0 0 0
+H001 (7) 20 2 2 2
+ 19 20 1 1 1
+H003 (8) 19 1 1 1
+H005 (9) 19 1 1 1
+H010 (2) 21 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /--------- H002
+ |
+ /-------14--------- H014
+ | |
+ | \--------- H009
+ /-------15
+ | +------------------ H008
+ | |
+ /--------16 \------------------ H006
+ | |
+ | \--------------------------- H012
+ /-------17
+ | +------------------------------------- H007
+ | |
+ /-------18 \------------------------------------- H011
+ | |
+ | \---------------------------------------------- H013
+ |
+ /-------20------------------------------------------------------- H001
+ | |
+ | | /--------- H003
+--------21 \--------------------------------------------19
+ | \--------- H005
+ |
+ \---------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_20 --> node_18 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_18 --> node_17 8 1 1.000 2 ==> 1
+ 9 1 0.333 2 ==> 1
+ 10 1 0.500 2 ==> 1
+ node_17 --> node_16 11 1 0.500 2 ==> 1
+ node_16 --> node_15 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_15 --> node_14 11 1 0.500 1 ==> 2
+ node_14 --> H014 9 1 0.333 1 ==> 2
+ 10 1 0.500 1 ==> 2
+ node_14 --> H009 12 1 0.333 2 ==> 1
+ node_15 --> H008 9 1 0.333 1 ==> 2
+ node_17 --> H007 12 1 0.333 2 ==> 1
+ node_20 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_20 --> node_19 3 1 1.000 2 ==> 1
+ node_19 --> H003 4 1 1.000 2 ==> 1
+ node_19 --> H005 12 1 0.333 2 ==> 1
+ node_21 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 50:
+
+Branch lengths and linkages for tree #50
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 22 root 0 0 0
+ 21 22 0 0 0
+ 19 21 2 2 2
+ 18 19 3 3 3
+ 17 18 1 1 2
+ 15 17 1 0 1
+H002 (1) 15 0 0 0
+ 14 15 2 2 2
+H007 (3) 14 1 1 1
+H012 (10) 14 1 1 1
+H011 (13) 14 0 0 0
+H009 (11) 15 1 1 1
+ 16 17 1 1 1
+H008 (4) 16 0 0 1
+H006 (12) 16 1 0 1
+H014 (5) 18 0 0 0
+H013 (6) 19 0 0 0
+H001 (7) 21 2 2 2
+ 20 21 1 1 1
+H003 (8) 20 1 1 1
+H005 (9) 20 1 1 1
+H010 (2) 22 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /------------------ H002
+ |
+ | /--------- H007
+ | |
+ /-------15-------14--------- H012
+ | | |
+ | | \--------- H011
+ | |
+ /--------17 \------------------ H009
+ | |
+ | | /--------- H008
+ /-------18 \----------------16
+ | | \--------- H006
+ | |
+ /-------19 \------------------------------------- H014
+ | |
+ | \---------------------------------------------- H013
+ |
+ /-------21------------------------------------------------------- H001
+ | |
+ | | /--------- H003
+--------22 \--------------------------------------------20
+ | \--------- H005
+ |
+ \---------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_19 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_19 --> node_18 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_18 --> node_17 10 1 1.000 2 ==> 1
+ node_17 --> node_15 9 1 0.500 2 --> 1
+ node_15 --> node_14 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_14 --> H007 12 1 0.333 2 ==> 1
+ node_14 --> H012 11 1 0.500 2 ==> 1
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_17 --> node_16 11 1 0.500 2 ==> 1
+ node_16 --> H006 9 1 0.500 2 --> 1
+ node_21 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_21 --> node_20 3 1 1.000 2 ==> 1
+ node_20 --> H003 4 1 1.000 2 ==> 1
+ node_20 --> H005 12 1 0.333 2 ==> 1
+ node_22 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 51:
+
+Branch lengths and linkages for tree #51
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 22 root 0 0 0
+ 21 22 0 0 0
+ 19 21 2 2 2
+ 18 19 3 3 3
+ 17 18 1 1 2
+ 15 17 1 0 1
+H002 (1) 15 0 0 0
+ 14 15 2 2 2
+H007 (3) 14 1 1 1
+H012 (10) 14 1 1 1
+H011 (13) 14 0 0 0
+H009 (11) 15 1 1 1
+ 16 17 1 1 1
+H008 (4) 16 0 0 1
+H006 (12) 16 1 0 1
+H014 (5) 18 0 0 0
+H001 (7) 19 0 0 0
+H013 (6) 21 2 2 2
+ 20 21 1 1 1
+H003 (8) 20 1 1 1
+H005 (9) 20 1 1 1
+H010 (2) 22 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /------------------ H002
+ |
+ | /--------- H007
+ | |
+ /-------15-------14--------- H012
+ | | |
+ | | \--------- H011
+ | |
+ /--------17 \------------------ H009
+ | |
+ | | /--------- H008
+ /-------18 \----------------16
+ | | \--------- H006
+ | |
+ /-------19 \------------------------------------- H014
+ | |
+ | \---------------------------------------------- H001
+ |
+ /-------21------------------------------------------------------- H013
+ | |
+ | | /--------- H003
+--------22 \--------------------------------------------20
+ | \--------- H005
+ |
+ \---------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_19 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_19 --> node_18 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_18 --> node_17 10 1 1.000 2 ==> 1
+ node_17 --> node_15 9 1 0.500 2 --> 1
+ node_15 --> node_14 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_14 --> H007 12 1 0.333 2 ==> 1
+ node_14 --> H012 11 1 0.500 2 ==> 1
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_17 --> node_16 11 1 0.500 2 ==> 1
+ node_16 --> H006 9 1 0.500 2 --> 1
+ node_21 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ node_21 --> node_20 3 1 1.000 2 ==> 1
+ node_20 --> H003 4 1 1.000 2 ==> 1
+ node_20 --> H005 12 1 0.333 2 ==> 1
+ node_22 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 52:
+
+Branch lengths and linkages for tree #52
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 24 root 0 0 0
+ 23 24 0 0 0
+ 21 23 2 2 2
+ 20 21 3 3 3
+ 19 20 1 1 2
+ 18 19 1 1 1
+ 14 18 0 0 1
+H002 (1) 14 0 0 0
+H009 (11) 14 1 1 1
+ 17 18 0 0 1
+ 16 17 2 2 2
+ 15 16 0 0 1
+H007 (3) 15 1 1 1
+H011 (13) 15 0 0 0
+H012 (10) 16 1 0 1
+H006 (12) 17 1 0 1
+H008 (4) 19 1 0 1
+H014 (5) 20 0 0 0
+H001 (7) 21 0 0 0
+H013 (6) 23 2 2 2
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (9) 22 1 1 1
+H010 (2) 24 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /------- H002
+ /--------------------14
+ | \------- H009
+ |
+ | /------- H007
+ /-----18 /------15
+ | | | \------- H011
+ | | /-----16
+ | | | \--------------- H012
+ /------19 \-----17
+ | | \---------------------- H006
+ | |
+ /-----20 \------------------------------------ H008
+ | |
+ /-----21 \-------------------------------------------- H014
+ | |
+ | \--------------------------------------------------- H001
+ |
+ /------23---------------------------------------------------------- H013
+ | |
+ | | /------- H003
+------24 \-------------------------------------------------22
+ | \------- H005
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_21 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_21 --> node_20 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_20 --> node_19 10 1 1.000 2 ==> 1
+ node_19 --> node_18 9 1 1.000 2 ==> 1
+ node_14 --> H009 12 1 0.333 2 ==> 1
+ node_17 --> node_16 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ node_16 --> H012 11 1 0.333 2 --> 1
+ node_17 --> H006 11 1 0.333 2 --> 1
+ node_19 --> H008 11 1 0.333 2 --> 1
+ node_23 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+ node_24 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 53:
+
+Branch lengths and linkages for tree #53
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 22 23 0 0 0
+ 20 22 0 0 2
+ 19 20 2 2 2
+ 18 19 3 1 3
+ 17 18 1 1 2
+ 15 17 1 0 1
+H002 (1) 15 0 0 0
+ 14 15 2 2 2
+H007 (3) 14 1 1 1
+H012 (10) 14 1 1 1
+H011 (13) 14 0 0 0
+H009 (11) 15 1 1 1
+ 16 17 1 1 1
+H008 (4) 16 0 0 1
+H006 (12) 16 1 0 1
+H014 (5) 18 0 0 0
+H001 (7) 19 0 0 2
+H013 (6) 20 2 0 2
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (9) 21 1 1 1
+H010 (2) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /---------------- H002
+ |
+ | /-------- H007
+ | |
+ /------15------14-------- H012
+ | | |
+ | | \-------- H011
+ | |
+ /------17 \---------------- H009
+ | |
+ | | /-------- H008
+ /-------18 \--------------16
+ | | \-------- H006
+ | |
+ /------19 \-------------------------------- H014
+ | |
+ /------20 \----------------------------------------- H001
+ | |
+ | \------------------------------------------------- H013
+ /------22
+ | | /-------- H003
+ | \-----------------------------------------------21
+-------23 \-------- H005
+ |
+ \----------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_20 --> node_19 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_19 --> node_18 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_18 --> node_17 10 1 1.000 2 ==> 1
+ node_17 --> node_15 9 1 0.500 2 --> 1
+ node_15 --> node_14 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_14 --> H007 12 1 0.333 2 ==> 1
+ node_14 --> H012 11 1 0.500 2 ==> 1
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_17 --> node_16 11 1 0.500 2 ==> 1
+ node_16 --> H006 9 1 0.500 2 --> 1
+ node_20 --> H013 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 54:
+
+Branch lengths and linkages for tree #54
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 22 root 0 0 0
+ 21 22 0 0 0
+ 19 21 0 0 2
+ 18 19 2 2 2
+ 17 18 3 1 3
+ 16 17 2 2 2
+H002 (1) 16 0 0 0
+ 14 16 2 2 2
+H007 (3) 14 1 1 1
+H012 (10) 14 1 1 1
+H011 (13) 14 0 0 0
+ 15 16 1 1 1
+H008 (4) 15 1 1 1
+H006 (12) 15 0 0 0
+H009 (11) 16 1 1 1
+H014 (5) 17 0 0 0
+H001 (7) 18 0 0 2
+H013 (6) 19 2 0 2
+ 20 21 1 1 1
+H003 (8) 20 1 1 1
+H005 (9) 20 1 1 1
+H010 (2) 22 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /------------------ H002
+ |
+ | /--------- H007
+ | |
+ +-------14--------- H012
+ | |
+ /-------16 \--------- H011
+ | |
+ | | /--------- H008
+ | +-------15
+ /--------17 | \--------- H006
+ | | |
+ | | \------------------ H009
+ /-------18 |
+ | | \--------------------------- H014
+ | |
+ /-------19 \------------------------------------- H001
+ | |
+ | \---------------------------------------------- H013
+ /-------21
+ | | /--------- H003
+ | \--------------------------------------------20
+--------22 \--------- H005
+ |
+ \---------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_19 --> node_18 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_18 --> node_17 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_17 --> node_16 9 1 0.500 2 ==> 1
+ 10 1 1.000 2 ==> 1
+ node_16 --> node_14 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_14 --> H007 12 1 0.333 2 ==> 1
+ node_14 --> H012 11 1 0.500 2 ==> 1
+ node_16 --> node_15 11 1 0.500 2 ==> 1
+ node_15 --> H008 9 1 0.500 1 ==> 2
+ node_16 --> H009 12 1 0.333 2 ==> 1
+ node_19 --> H013 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ node_21 --> node_20 3 1 1.000 2 ==> 1
+ node_20 --> H003 4 1 1.000 2 ==> 1
+ node_20 --> H005 12 1 0.333 2 ==> 1
+ node_22 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 55:
+
+Branch lengths and linkages for tree #55
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 24 root 0 0 0
+ 23 24 0 0 0
+ 21 23 0 0 2
+ 20 21 2 2 2
+ 19 20 3 1 3
+ 18 19 1 1 1
+ 17 18 1 1 1
+H002 (1) 17 0 0 0
+ 16 17 0 0 1
+ 15 16 2 2 2
+H007 (3) 15 1 0 1
+ 14 15 0 0 1
+H012 (10) 14 1 1 1
+H011 (13) 14 0 0 0
+H009 (11) 16 1 0 1
+H006 (12) 17 1 1 1
+H008 (4) 18 1 1 1
+H014 (5) 19 0 0 0
+H001 (7) 20 0 0 2
+H013 (6) 21 2 0 2
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (9) 22 1 1 1
+H010 (2) 24 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /--------------------------- H002
+ |
+ | /------------- H007
+ | |
+ | /-----15 /------- H012
+ /----17 | \----14
+ | +-----16 \------- H011
+ | | |
+ | | \-------------------- H009
+ /-----18 |
+ | | \--------------------------- H006
+ | |
+ /----19 \--------------------------------- H008
+ | |
+ /-----20 \---------------------------------------- H014
+ | |
+ /-----21 \---------------------------------------------- H001
+ | |
+ | \----------------------------------------------------- H013
+ /----23
+ | | /------- H003
+ | \---------------------------------------------------22
+------24 \------- H005
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_20 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_20 --> node_19 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_19 --> node_18 10 1 1.000 2 ==> 1
+ node_18 --> node_17 9 1 1.000 2 ==> 1
+ node_16 --> node_15 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 --> 1
+ node_14 --> H012 11 1 0.333 2 ==> 1
+ node_16 --> H009 12 1 0.333 2 --> 1
+ node_17 --> H006 11 1 0.333 2 ==> 1
+ node_18 --> H008 11 1 0.333 2 ==> 1
+ node_21 --> H013 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+ node_24 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 56:
+
+Branch lengths and linkages for tree #56
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 24 root 0 0 0
+ 23 24 0 0 0
+ 21 23 0 0 2
+ 20 21 2 2 2
+ 19 20 3 1 3
+ 18 19 1 1 1
+ 17 18 1 1 1
+H002 (1) 17 0 0 0
+ 16 17 0 0 1
+ 15 16 2 2 2
+ 14 15 0 0 1
+H007 (3) 14 1 1 1
+H011 (13) 14 0 0 0
+H012 (10) 15 1 0 1
+H006 (12) 16 1 0 1
+H009 (11) 17 1 1 1
+H008 (4) 18 1 1 1
+H014 (5) 19 0 0 0
+H001 (7) 20 0 0 2
+H013 (6) 21 2 0 2
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (9) 22 1 1 1
+H010 (2) 24 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /--------------------------- H002
+ |
+ | /------- H007
+ | /----14
+ | | \------- H011
+ /----17 /-----15
+ | | | \------------- H012
+ | +-----16
+ | | \-------------------- H006
+ /-----18 |
+ | | \--------------------------- H009
+ | |
+ /----19 \--------------------------------- H008
+ | |
+ /-----20 \---------------------------------------- H014
+ | |
+ /-----21 \---------------------------------------------- H001
+ | |
+ | \----------------------------------------------------- H013
+ /----23
+ | | /------- H003
+ | \---------------------------------------------------22
+------24 \------- H005
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_20 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_20 --> node_19 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_19 --> node_18 10 1 1.000 2 ==> 1
+ node_18 --> node_17 9 1 1.000 2 ==> 1
+ node_16 --> node_15 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_14 --> H007 12 1 0.333 2 ==> 1
+ node_15 --> H012 11 1 0.333 2 --> 1
+ node_16 --> H006 11 1 0.333 2 --> 1
+ node_17 --> H009 12 1 0.333 2 ==> 1
+ node_18 --> H008 11 1 0.333 2 ==> 1
+ node_21 --> H013 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+ node_24 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 57:
+
+Branch lengths and linkages for tree #57
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 21 root 0 0 0
+ 20 21 0 0 0
+ 18 20 2 2 2
+ 17 18 3 3 3
+ 16 17 1 1 1
+ 15 16 1 1 1
+H002 (1) 15 0 0 0
+ 14 15 2 2 2
+H007 (3) 14 1 1 1
+H012 (10) 14 1 1 1
+H011 (13) 14 0 0 0
+H009 (11) 15 1 1 1
+H006 (12) 15 1 1 1
+H008 (4) 16 1 1 1
+H014 (5) 17 0 0 0
+H001 (7) 18 0 0 0
+H013 (6) 20 2 2 2
+ 19 20 1 1 1
+H003 (8) 19 1 1 1
+H005 (9) 19 1 1 1
+H010 (2) 21 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /------------------ H002
+ |
+ | /--------- H007
+ | |
+ +-------14--------- H012
+ /-------15 |
+ | | \--------- H011
+ | |
+ | +------------------ H009
+ /--------16 |
+ | | \------------------ H006
+ | |
+ /-------17 \--------------------------- H008
+ | |
+ /-------18 \------------------------------------- H014
+ | |
+ | \---------------------------------------------- H001
+ |
+ /-------20------------------------------------------------------- H013
+ | |
+ | | /--------- H003
+--------21 \--------------------------------------------19
+ | \--------- H005
+ |
+ \---------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_20 --> node_18 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_18 --> node_17 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_17 --> node_16 10 1 1.000 2 ==> 1
+ node_16 --> node_15 9 1 1.000 2 ==> 1
+ node_15 --> node_14 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_14 --> H007 12 1 0.333 2 ==> 1
+ node_14 --> H012 11 1 0.333 2 ==> 1
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_15 --> H006 11 1 0.333 2 ==> 1
+ node_16 --> H008 11 1 0.333 2 ==> 1
+ node_20 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ node_20 --> node_19 3 1 1.000 2 ==> 1
+ node_19 --> H003 4 1 1.000 2 ==> 1
+ node_19 --> H005 12 1 0.333 2 ==> 1
+ node_21 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 58:
+
+Branch lengths and linkages for tree #58
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 24 root 0 0 0
+ 23 24 0 0 0
+ 21 23 0 0 2
+ 20 21 2 2 2
+ 19 20 3 1 3
+ 18 19 2 2 2
+H002 (1) 18 0 0 0
+ 16 18 0 0 1
+ 15 16 2 2 2
+H007 (3) 15 1 0 1
+ 14 15 0 0 1
+H012 (10) 14 1 1 1
+H011 (13) 14 0 0 0
+H009 (11) 16 1 0 1
+ 17 18 1 1 1
+H008 (4) 17 1 1 1
+H006 (12) 17 0 0 0
+H014 (5) 19 0 0 0
+H013 (6) 20 0 0 2
+H001 (7) 21 2 0 2
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (9) 22 1 1 1
+H010 (2) 24 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /----------------------------- H002
+ |
+ | /--------------- H007
+ | |
+ | /-----15 /------- H012
+ | | \------14
+ /-----18-----16 \------- H011
+ | | |
+ | | \---------------------- H009
+ | |
+ /------19 | /------- H008
+ | | \--------------------17
+ | | \------- H006
+ /-----20 |
+ | | \------------------------------------ H014
+ | |
+ /-----21 \-------------------------------------------- H013
+ | |
+ | \--------------------------------------------------- H001
+ /------23
+ | | /------- H003
+ | \-------------------------------------------------22
+------24 \------- H005
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_20 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_20 --> node_19 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_19 --> node_18 9 1 0.500 2 ==> 1
+ 10 1 1.000 2 ==> 1
+ node_16 --> node_15 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 --> 1
+ node_14 --> H012 11 1 0.500 2 ==> 1
+ node_16 --> H009 12 1 0.333 2 --> 1
+ node_18 --> node_17 11 1 0.500 2 ==> 1
+ node_17 --> H008 9 1 0.500 1 ==> 2
+ node_21 --> H001 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+ node_24 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 59:
+
+Branch lengths and linkages for tree #59
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 25 root 0 0 0
+ 24 25 0 0 0
+ 22 24 0 0 2
+ 21 22 2 2 2
+ 20 21 3 1 3
+ 19 20 1 1 2
+ 17 19 1 0 1
+H002 (1) 17 0 0 0
+ 16 17 0 0 1
+ 15 16 2 2 2
+H007 (3) 15 1 0 1
+ 14 15 0 0 1
+H012 (10) 14 1 1 1
+H011 (13) 14 0 0 0
+H009 (11) 16 1 0 1
+ 18 19 1 1 1
+H008 (4) 18 0 0 1
+H006 (12) 18 1 0 1
+H014 (5) 20 0 0 0
+H013 (6) 21 0 0 2
+H001 (7) 22 2 0 2
+ 23 24 1 1 1
+H003 (8) 23 1 1 1
+H005 (9) 23 1 1 1
+H010 (2) 25 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /--------------------------- H002
+ |
+ | /------------- H007
+ /----17 |
+ | | /-----15 /------- H012
+ | | | \----14
+ | \-----16 \------- H011
+ /-----19 |
+ | | \-------------------- H009
+ | |
+ | | /------- H008
+ /----20 \------------------------18
+ | | \------- H006
+ | |
+ /-----21 \---------------------------------------- H014
+ | |
+ /-----22 \---------------------------------------------- H013
+ | |
+ | \----------------------------------------------------- H001
+ /----24
+ | | /------- H003
+ | \---------------------------------------------------23
+------25 \------- H005
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_21 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_21 --> node_20 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_20 --> node_19 10 1 1.000 2 ==> 1
+ node_19 --> node_17 9 1 0.500 2 --> 1
+ node_16 --> node_15 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 --> 1
+ node_14 --> H012 11 1 0.500 2 ==> 1
+ node_16 --> H009 12 1 0.333 2 --> 1
+ node_19 --> node_18 11 1 0.500 2 ==> 1
+ node_18 --> H006 9 1 0.500 2 --> 1
+ node_22 --> H001 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ node_24 --> node_23 3 1 1.000 2 ==> 1
+ node_23 --> H003 4 1 1.000 2 ==> 1
+ node_23 --> H005 12 1 0.333 2 ==> 1
+ node_25 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 60:
+
+Branch lengths and linkages for tree #60
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 22 23 0 0 0
+ 20 22 2 2 2
+ 19 20 3 3 3
+ 18 19 2 2 2
+H002 (1) 18 0 0 0
+ 16 18 0 0 1
+ 15 16 2 2 2
+H007 (3) 15 1 0 1
+ 14 15 0 0 1
+H012 (10) 14 1 1 1
+H011 (13) 14 0 0 0
+H009 (11) 16 1 0 1
+ 17 18 1 1 1
+H008 (4) 17 1 1 1
+H006 (12) 17 0 0 0
+H014 (5) 19 0 0 0
+H001 (7) 20 0 0 0
+H013 (6) 22 2 2 2
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (9) 21 1 1 1
+H010 (2) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /-------------------------------- H002
+ |
+ | /---------------- H007
+ | |
+ | /------15 /-------- H012
+ | | \------14
+ /-------18------16 \-------- H011
+ | | |
+ | | \------------------------ H009
+ | |
+ /------19 | /-------- H008
+ | | \----------------------17
+ | | \-------- H006
+ /------20 |
+ | | \----------------------------------------- H014
+ | |
+ | \------------------------------------------------- H001
+ /------22
+ | +--------------------------------------------------------- H013
+ | |
+ | | /-------- H003
+-------23 \-----------------------------------------------21
+ | \-------- H005
+ |
+ \----------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_20 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_20 --> node_19 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_19 --> node_18 9 1 0.500 2 ==> 1
+ 10 1 1.000 2 ==> 1
+ node_16 --> node_15 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 --> 1
+ node_14 --> H012 11 1 0.500 2 ==> 1
+ node_16 --> H009 12 1 0.333 2 --> 1
+ node_18 --> node_17 11 1 0.500 2 ==> 1
+ node_17 --> H008 9 1 0.500 1 ==> 2
+ node_22 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 61:
+
+Branch lengths and linkages for tree #61
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 24 root 0 0 0
+ 23 24 0 0 0
+ 21 23 0 0 2
+ 20 21 2 2 2
+ 19 20 3 1 3
+ 18 19 1 1 1
+ 17 18 1 1 1
+H002 (1) 17 0 0 0
+ 16 17 0 0 1
+ 15 16 2 2 2
+H007 (3) 15 1 0 1
+ 14 15 0 0 1
+H012 (10) 14 1 1 1
+H011 (13) 14 0 0 0
+H009 (11) 16 1 0 1
+H006 (12) 17 1 1 1
+H008 (4) 18 1 1 1
+H014 (5) 19 0 0 0
+H013 (6) 20 0 0 2
+H001 (7) 21 2 0 2
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (9) 22 1 1 1
+H010 (2) 24 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /--------------------------- H002
+ |
+ | /------------- H007
+ | |
+ | /-----15 /------- H012
+ /----17 | \----14
+ | +-----16 \------- H011
+ | | |
+ | | \-------------------- H009
+ /-----18 |
+ | | \--------------------------- H006
+ | |
+ /----19 \--------------------------------- H008
+ | |
+ /-----20 \---------------------------------------- H014
+ | |
+ /-----21 \---------------------------------------------- H013
+ | |
+ | \----------------------------------------------------- H001
+ /----23
+ | | /------- H003
+ | \---------------------------------------------------22
+------24 \------- H005
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_20 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_20 --> node_19 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_19 --> node_18 10 1 1.000 2 ==> 1
+ node_18 --> node_17 9 1 1.000 2 ==> 1
+ node_16 --> node_15 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 --> 1
+ node_14 --> H012 11 1 0.333 2 ==> 1
+ node_16 --> H009 12 1 0.333 2 --> 1
+ node_17 --> H006 11 1 0.333 2 ==> 1
+ node_18 --> H008 11 1 0.333 2 ==> 1
+ node_21 --> H001 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+ node_24 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 62:
+
+Branch lengths and linkages for tree #62
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 24 root 0 0 0
+ 23 24 0 0 0
+ 21 23 0 0 2
+ 20 21 2 2 2
+ 19 20 3 1 3
+ 18 19 2 2 2
+H002 (1) 18 0 0 0
+ 17 18 0 0 1
+ 15 17 2 2 2
+ 14 15 0 0 1
+H007 (3) 14 1 1 1
+H011 (13) 14 0 0 0
+H012 (10) 15 1 0 1
+ 16 17 1 0 1
+H008 (4) 16 1 1 1
+H006 (12) 16 0 0 0
+H009 (11) 18 1 1 1
+H014 (5) 19 0 0 0
+H013 (6) 20 0 0 2
+H001 (7) 21 2 0 2
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (9) 22 1 1 1
+H010 (2) 24 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /----------------------------- H002
+ |
+ | /------- H007
+ | /------14
+ | | \------- H011
+ | /-----15
+ /-----18 | \--------------- H012
+ | +-----17
+ | | | /------- H008
+ | | \-------------16
+ /------19 | \------- H006
+ | | |
+ | | \----------------------------- H009
+ /-----20 |
+ | | \------------------------------------ H014
+ | |
+ /-----21 \-------------------------------------------- H013
+ | |
+ | \--------------------------------------------------- H001
+ /------23
+ | | /------- H003
+ | \-------------------------------------------------22
+------24 \------- H005
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_20 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_20 --> node_19 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_19 --> node_18 9 1 0.500 2 ==> 1
+ 10 1 1.000 2 ==> 1
+ node_17 --> node_15 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_14 --> H007 12 1 0.333 2 ==> 1
+ node_15 --> H012 11 1 0.500 2 --> 1
+ node_17 --> node_16 11 1 0.500 2 --> 1
+ node_16 --> H008 9 1 0.500 1 ==> 2
+ node_18 --> H009 12 1 0.333 2 ==> 1
+ node_21 --> H001 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+ node_24 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 63:
+
+Branch lengths and linkages for tree #63
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 22 23 0 0 0
+ 20 22 0 0 2
+ 19 20 2 2 2
+ 18 19 3 1 3
+ 17 18 2 2 2
+H002 (1) 17 0 0 0
+ 16 17 1 1 1
+ 15 16 2 2 2
+ 14 15 1 1 1
+H007 (3) 14 1 1 1
+H011 (13) 14 0 0 0
+H012 (10) 15 0 0 0
+H008 (4) 16 1 1 1
+H006 (12) 16 0 0 0
+H009 (11) 17 1 1 1
+H014 (5) 18 0 0 0
+H013 (6) 19 0 0 2
+H001 (7) 20 2 0 2
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (9) 21 1 1 1
+H010 (2) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /----------------------------- H002
+ |
+ | /------- H007
+ | /------14
+ | | \------- H011
+ | /-----15
+ /-----17 | \--------------- H012
+ | | |
+ | +-----16---------------------- H008
+ | | |
+ /------18 | \---------------------- H006
+ | | |
+ | | \----------------------------- H009
+ /-----19 |
+ | | \------------------------------------ H014
+ | |
+ /-----20 \-------------------------------------------- H013
+ | |
+ | \--------------------------------------------------- H001
+ /------22
+ | | /------- H003
+ | \-------------------------------------------------21
+------23 \------- H005
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_20 --> node_19 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_19 --> node_18 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_18 --> node_17 9 1 0.500 2 ==> 1
+ 10 1 1.000 2 ==> 1
+ node_17 --> node_16 11 1 0.500 2 ==> 1
+ node_16 --> node_15 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_15 --> node_14 11 1 0.500 1 ==> 2
+ node_14 --> H007 12 1 0.333 2 ==> 1
+ node_16 --> H008 9 1 0.500 1 ==> 2
+ node_17 --> H009 12 1 0.333 2 ==> 1
+ node_20 --> H001 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 64:
+
+Branch lengths and linkages for tree #64
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 24 root 0 0 0
+ 23 24 0 0 0
+ 21 23 0 0 2
+ 20 21 2 2 2
+ 19 20 3 1 3
+ 18 19 2 2 2
+H002 (1) 18 0 0 0
+ 16 18 0 0 1
+ 15 16 2 2 2
+H007 (3) 15 1 0 1
+ 14 15 0 0 1
+H012 (10) 14 1 1 1
+H011 (13) 14 0 0 0
+H009 (11) 16 1 0 1
+ 17 18 1 1 1
+H008 (4) 17 1 1 1
+H006 (12) 17 0 0 0
+H014 (5) 19 0 0 0
+H001 (7) 20 0 0 2
+H013 (6) 21 2 0 2
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (9) 22 1 1 1
+H010 (2) 24 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /----------------------------- H002
+ |
+ | /--------------- H007
+ | |
+ | /-----15 /------- H012
+ | | \------14
+ /-----18-----16 \------- H011
+ | | |
+ | | \---------------------- H009
+ | |
+ /------19 | /------- H008
+ | | \--------------------17
+ | | \------- H006
+ /-----20 |
+ | | \------------------------------------ H014
+ | |
+ /-----21 \-------------------------------------------- H001
+ | |
+ | \--------------------------------------------------- H013
+ /------23
+ | | /------- H003
+ | \-------------------------------------------------22
+------24 \------- H005
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_20 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_20 --> node_19 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_19 --> node_18 9 1 0.500 2 ==> 1
+ 10 1 1.000 2 ==> 1
+ node_16 --> node_15 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 --> 1
+ node_14 --> H012 11 1 0.500 2 ==> 1
+ node_16 --> H009 12 1 0.333 2 --> 1
+ node_18 --> node_17 11 1 0.500 2 ==> 1
+ node_17 --> H008 9 1 0.500 1 ==> 2
+ node_21 --> H013 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+ node_24 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 65:
+
+Branch lengths and linkages for tree #65
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 22 23 0 0 0
+ 20 22 2 2 2
+ 19 20 3 3 3
+ 18 19 2 2 2
+H002 (1) 18 0 0 0
+ 16 18 0 0 1
+ 15 16 2 2 2
+H007 (3) 15 1 0 1
+ 14 15 0 0 1
+H012 (10) 14 1 1 1
+H011 (13) 14 0 0 0
+H009 (11) 16 1 0 1
+ 17 18 1 1 1
+H008 (4) 17 1 1 1
+H006 (12) 17 0 0 0
+H014 (5) 19 0 0 0
+H013 (6) 20 0 0 0
+H001 (7) 22 2 2 2
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (9) 21 1 1 1
+H010 (2) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /-------------------------------- H002
+ |
+ | /---------------- H007
+ | |
+ | /------15 /-------- H012
+ | | \------14
+ /-------18------16 \-------- H011
+ | | |
+ | | \------------------------ H009
+ | |
+ /------19 | /-------- H008
+ | | \----------------------17
+ | | \-------- H006
+ /------20 |
+ | | \----------------------------------------- H014
+ | |
+ | \------------------------------------------------- H013
+ /------22
+ | +--------------------------------------------------------- H001
+ | |
+ | | /-------- H003
+-------23 \-----------------------------------------------21
+ | \-------- H005
+ |
+ \----------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_20 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_20 --> node_19 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_19 --> node_18 9 1 0.500 2 ==> 1
+ 10 1 1.000 2 ==> 1
+ node_16 --> node_15 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 --> 1
+ node_14 --> H012 11 1 0.500 2 ==> 1
+ node_16 --> H009 12 1 0.333 2 --> 1
+ node_18 --> node_17 11 1 0.500 2 ==> 1
+ node_17 --> H008 9 1 0.500 1 ==> 2
+ node_22 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 66:
+
+Branch lengths and linkages for tree #66
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 21 root 0 0 0
+ 20 21 0 0 0
+ 18 20 2 2 2
+ 17 18 3 3 3
+ 16 17 2 2 2
+H002 (1) 16 0 0 0
+ 14 16 2 2 2
+H007 (3) 14 1 1 1
+H012 (10) 14 1 1 1
+H011 (13) 14 0 0 0
+ 15 16 1 1 1
+H008 (4) 15 1 1 1
+H006 (12) 15 0 0 0
+H009 (11) 16 1 1 1
+H014 (5) 17 0 0 0
+H001 (7) 18 0 0 0
+H013 (6) 20 2 2 2
+ 19 20 1 1 1
+H003 (8) 19 1 1 1
+H005 (9) 19 1 1 1
+H010 (2) 21 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /--------------------- H002
+ |
+ | /---------- H007
+ | |
+ +---------14---------- H012
+ | |
+ /--------16 \---------- H011
+ | |
+ | | /---------- H008
+ | +---------15
+ /---------17 | \---------- H006
+ | | |
+ | | \--------------------- H009
+ /--------18 |
+ | | \------------------------------- H014
+ | |
+ | \------------------------------------------ H001
+ /---------20
+ | +---------------------------------------------------- H013
+ | |
+ | | /---------- H003
+---------21 \----------------------------------------19
+ | \---------- H005
+ |
+ \--------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_20 --> node_18 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_18 --> node_17 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_17 --> node_16 9 1 0.500 2 ==> 1
+ 10 1 1.000 2 ==> 1
+ node_16 --> node_14 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_14 --> H007 12 1 0.333 2 ==> 1
+ node_14 --> H012 11 1 0.500 2 ==> 1
+ node_16 --> node_15 11 1 0.500 2 ==> 1
+ node_15 --> H008 9 1 0.500 1 ==> 2
+ node_16 --> H009 12 1 0.333 2 ==> 1
+ node_20 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ node_20 --> node_19 3 1 1.000 2 ==> 1
+ node_19 --> H003 4 1 1.000 2 ==> 1
+ node_19 --> H005 12 1 0.333 2 ==> 1
+ node_21 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 67:
+
+Branch lengths and linkages for tree #67
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 22 23 0 0 0
+ 20 22 2 2 2
+ 19 20 3 3 3
+ 18 19 2 2 2
+H002 (1) 18 0 0 0
+ 17 18 0 0 1
+ 15 17 2 2 2
+ 14 15 0 0 1
+H007 (3) 14 1 1 1
+H011 (13) 14 0 0 0
+H012 (10) 15 1 0 1
+ 16 17 1 0 1
+H008 (4) 16 1 1 1
+H006 (12) 16 0 0 0
+H009 (11) 18 1 1 1
+H014 (5) 19 0 0 0
+H013 (6) 20 0 0 0
+H001 (7) 22 2 2 2
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (9) 21 1 1 1
+H010 (2) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /-------------------------------- H002
+ |
+ | /-------- H007
+ | /------14
+ | | \-------- H011
+ | /------15
+ /-------18 | \---------------- H012
+ | +------17
+ | | | /-------- H008
+ | | \--------------16
+ /------19 | \-------- H006
+ | | |
+ | | \-------------------------------- H009
+ /------20 |
+ | | \----------------------------------------- H014
+ | |
+ | \------------------------------------------------- H013
+ /------22
+ | +--------------------------------------------------------- H001
+ | |
+ | | /-------- H003
+-------23 \-----------------------------------------------21
+ | \-------- H005
+ |
+ \----------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_20 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_20 --> node_19 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_19 --> node_18 9 1 0.500 2 ==> 1
+ 10 1 1.000 2 ==> 1
+ node_17 --> node_15 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_14 --> H007 12 1 0.333 2 ==> 1
+ node_15 --> H012 11 1 0.500 2 --> 1
+ node_17 --> node_16 11 1 0.500 2 --> 1
+ node_16 --> H008 9 1 0.500 1 ==> 2
+ node_18 --> H009 12 1 0.333 2 ==> 1
+ node_22 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 68:
+
+Branch lengths and linkages for tree #68
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 24 root 0 0 0
+ 23 24 0 0 0
+ 21 23 2 2 2
+ 20 21 3 3 3
+ 19 20 1 1 2
+ 14 19 1 0 1
+H002 (1) 14 0 0 0
+H009 (11) 14 1 1 1
+ 18 19 1 1 1
+ 17 18 1 0 1
+ 16 17 2 2 2
+ 15 16 1 1 1
+H007 (3) 15 1 1 1
+H011 (13) 15 0 0 0
+H012 (10) 16 0 0 0
+H006 (12) 17 0 0 0
+H008 (4) 18 0 0 1
+H014 (5) 20 0 0 0
+H013 (6) 21 0 0 0
+H001 (7) 23 2 2 2
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (9) 22 1 1 1
+H010 (2) 24 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /------- H002
+ /---------------------------14
+ | \------- H009
+ |
+ | /------- H007
+ | /------15
+ /------19 | \------- H011
+ | | /-----16
+ | | | \--------------- H012
+ | | /-----17
+ /-----20 | | \---------------------- H006
+ | | \-----18
+ | | \----------------------------- H008
+ /-----21 |
+ | | \-------------------------------------------- H014
+ | |
+ | \--------------------------------------------------- H013
+ /------23
+ | +---------------------------------------------------------- H001
+ | |
+ | | /------- H003
+------24 \-------------------------------------------------22
+ | \------- H005
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_21 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_21 --> node_20 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_20 --> node_19 10 1 1.000 2 ==> 1
+ node_19 --> node_14 9 1 0.500 2 --> 1
+ node_14 --> H009 12 1 0.333 2 ==> 1
+ node_19 --> node_18 11 1 0.500 2 ==> 1
+ node_18 --> node_17 9 1 0.500 2 --> 1
+ node_17 --> node_16 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_16 --> node_15 11 1 0.500 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ node_23 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+ node_24 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 69:
+
+Branch lengths and linkages for tree #69
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 22 root 0 0 0
+ 21 22 0 0 0
+ 19 21 2 2 2
+ 18 19 3 3 3
+ 17 18 2 2 2
+H002 (1) 17 0 0 0
+ 16 17 1 1 1
+ 15 16 2 2 2
+ 14 15 1 1 1
+H007 (3) 14 1 1 1
+H011 (13) 14 0 0 0
+H012 (10) 15 0 0 0
+H008 (4) 16 1 1 1
+H006 (12) 16 0 0 0
+H009 (11) 17 1 1 1
+H014 (5) 18 0 0 0
+H013 (6) 19 0 0 0
+H001 (7) 21 2 2 2
+ 20 21 1 1 1
+H003 (8) 20 1 1 1
+H005 (9) 20 1 1 1
+H010 (2) 22 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /-------------------------------- H002
+ |
+ | /-------- H007
+ | /------14
+ | | \-------- H011
+ | /------15
+ /-------17 | \---------------- H012
+ | | |
+ | +------16------------------------ H008
+ | | |
+ /------18 | \------------------------ H006
+ | | |
+ | | \-------------------------------- H009
+ /------19 |
+ | | \----------------------------------------- H014
+ | |
+ | \------------------------------------------------- H013
+ /------21
+ | +--------------------------------------------------------- H001
+ | |
+ | | /-------- H003
+-------22 \-----------------------------------------------20
+ | \-------- H005
+ |
+ \----------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_19 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_19 --> node_18 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_18 --> node_17 9 1 0.500 2 ==> 1
+ 10 1 1.000 2 ==> 1
+ node_17 --> node_16 11 1 0.500 2 ==> 1
+ node_16 --> node_15 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_15 --> node_14 11 1 0.500 1 ==> 2
+ node_14 --> H007 12 1 0.333 2 ==> 1
+ node_16 --> H008 9 1 0.500 1 ==> 2
+ node_17 --> H009 12 1 0.333 2 ==> 1
+ node_21 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_21 --> node_20 3 1 1.000 2 ==> 1
+ node_20 --> H003 4 1 1.000 2 ==> 1
+ node_20 --> H005 12 1 0.333 2 ==> 1
+ node_22 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 70:
+
+Branch lengths and linkages for tree #70
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 21 root 0 0 0
+ 20 21 0 0 0
+ 18 20 2 2 2
+ 17 18 3 3 3
+ 16 17 2 2 2
+H002 (1) 16 0 0 0
+ 14 16 2 2 2
+H007 (3) 14 1 1 1
+H012 (10) 14 1 1 1
+H011 (13) 14 0 0 0
+ 15 16 1 1 1
+H008 (4) 15 1 1 1
+H006 (12) 15 0 0 0
+H009 (11) 16 1 1 1
+H014 (5) 17 0 0 0
+H013 (6) 18 0 0 0
+H001 (7) 20 2 2 2
+ 19 20 1 1 1
+H003 (8) 19 1 1 1
+H005 (9) 19 1 1 1
+H010 (2) 21 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /--------------------- H002
+ |
+ | /---------- H007
+ | |
+ +---------14---------- H012
+ | |
+ /--------16 \---------- H011
+ | |
+ | | /---------- H008
+ | +---------15
+ /---------17 | \---------- H006
+ | | |
+ | | \--------------------- H009
+ /--------18 |
+ | | \------------------------------- H014
+ | |
+ | \------------------------------------------ H013
+ /---------20
+ | +---------------------------------------------------- H001
+ | |
+ | | /---------- H003
+---------21 \----------------------------------------19
+ | \---------- H005
+ |
+ \--------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_20 --> node_18 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_18 --> node_17 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_17 --> node_16 9 1 0.500 2 ==> 1
+ 10 1 1.000 2 ==> 1
+ node_16 --> node_14 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_14 --> H007 12 1 0.333 2 ==> 1
+ node_14 --> H012 11 1 0.500 2 ==> 1
+ node_16 --> node_15 11 1 0.500 2 ==> 1
+ node_15 --> H008 9 1 0.500 1 ==> 2
+ node_16 --> H009 12 1 0.333 2 ==> 1
+ node_20 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_20 --> node_19 3 1 1.000 2 ==> 1
+ node_19 --> H003 4 1 1.000 2 ==> 1
+ node_19 --> H005 12 1 0.333 2 ==> 1
+ node_21 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 71:
+
+Branch lengths and linkages for tree #71
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 24 root 0 0 0
+ 23 24 0 0 0
+ 21 23 2 2 2
+ 20 21 3 3 3
+ 19 20 1 1 2
+ 17 19 1 0 1
+H002 (1) 17 0 0 0
+ 16 17 0 0 1
+ 15 16 2 2 2
+H007 (3) 15 1 0 1
+ 14 15 0 0 1
+H012 (10) 14 1 1 1
+H011 (13) 14 0 0 0
+H009 (11) 16 1 0 1
+ 18 19 1 1 1
+H008 (4) 18 0 0 1
+H006 (12) 18 1 0 1
+H014 (5) 20 0 0 0
+H013 (6) 21 0 0 0
+H001 (7) 23 2 2 2
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (9) 22 1 1 1
+H010 (2) 24 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /----------------------------- H002
+ |
+ | /--------------- H007
+ /-----17 |
+ | | /-----15 /------- H012
+ | | | \------14
+ | \-----16 \------- H011
+ /------19 |
+ | | \---------------------- H009
+ | |
+ | | /------- H008
+ /-----20 \---------------------------18
+ | | \------- H006
+ | |
+ /-----21 \-------------------------------------------- H014
+ | |
+ | \--------------------------------------------------- H013
+ |
+ /------23---------------------------------------------------------- H001
+ | |
+ | | /------- H003
+------24 \-------------------------------------------------22
+ | \------- H005
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_21 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_21 --> node_20 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_20 --> node_19 10 1 1.000 2 ==> 1
+ node_19 --> node_17 9 1 0.500 2 --> 1
+ node_16 --> node_15 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 --> 1
+ node_14 --> H012 11 1 0.500 2 ==> 1
+ node_16 --> H009 12 1 0.333 2 --> 1
+ node_19 --> node_18 11 1 0.500 2 ==> 1
+ node_18 --> H006 9 1 0.500 2 --> 1
+ node_23 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+ node_24 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 72:
+
+Branch lengths and linkages for tree #72
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 22 23 0 0 0
+ 20 22 2 2 2
+ 19 20 3 3 3
+ 18 19 1 1 2
+ 17 18 1 1 1
+ 14 17 0 0 1
+H002 (1) 14 0 0 0
+H009 (11) 14 1 1 1
+ 16 17 2 2 2
+ 15 16 0 0 1
+H007 (3) 15 1 1 1
+H011 (13) 15 0 0 0
+H012 (10) 16 1 0 1
+H006 (12) 17 1 0 1
+H008 (4) 18 1 0 1
+H014 (5) 19 0 0 0
+H001 (7) 20 0 0 0
+H013 (6) 22 2 2 2
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (9) 21 1 1 1
+H010 (2) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /-------- H002
+ /--------------14
+ | \-------- H009
+ |
+ | /-------- H007
+ | /------15
+ /------17 | \-------- H011
+ | +------16
+ | | \---------------- H012
+ /-------18 |
+ | | \------------------------ H006
+ | |
+ /------19 \-------------------------------- H008
+ | |
+ /------20 \----------------------------------------- H014
+ | |
+ | \------------------------------------------------- H001
+ |
+ /------22--------------------------------------------------------- H013
+ | |
+ | | /-------- H003
+-------23 \-----------------------------------------------21
+ | \-------- H005
+ |
+ \----------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_20 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_20 --> node_19 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_19 --> node_18 10 1 1.000 2 ==> 1
+ node_18 --> node_17 9 1 1.000 2 ==> 1
+ node_14 --> H009 12 1 0.333 2 ==> 1
+ node_17 --> node_16 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ node_16 --> H012 11 1 0.333 2 --> 1
+ node_17 --> H006 11 1 0.333 2 --> 1
+ node_18 --> H008 11 1 0.333 2 --> 1
+ node_22 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 73:
+
+Branch lengths and linkages for tree #73
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 25 root 0 0 0
+ 24 25 0 0 0
+ 22 24 0 0 2
+ 21 22 2 2 2
+ 20 21 3 1 3
+ 19 20 1 1 2
+ 14 19 1 0 1
+H002 (1) 14 0 0 0
+H009 (11) 14 1 1 1
+ 18 19 1 1 1
+ 17 18 1 0 1
+ 16 17 2 2 2
+ 15 16 1 1 1
+H007 (3) 15 1 1 1
+H011 (13) 15 0 0 0
+H012 (10) 16 0 0 0
+H006 (12) 17 0 0 0
+H008 (4) 18 0 0 1
+H014 (5) 20 0 0 0
+H013 (6) 21 0 0 2
+H001 (7) 22 2 0 2
+ 23 24 1 1 1
+H003 (8) 23 1 1 1
+H005 (9) 23 1 1 1
+H010 (2) 25 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /------- H002
+ /------------------------14
+ | \------- H009
+ |
+ | /------- H007
+ | /----15
+ /-----19 | \------- H011
+ | | /-----16
+ | | | \------------- H012
+ | | /-----17
+ /----20 | | \-------------------- H006
+ | | \----18
+ | | \--------------------------- H008
+ /-----21 |
+ | | \---------------------------------------- H014
+ | |
+ /-----22 \---------------------------------------------- H013
+ | |
+ | \----------------------------------------------------- H001
+ /----24
+ | | /------- H003
+ | \---------------------------------------------------23
+------25 \------- H005
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_21 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_21 --> node_20 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_20 --> node_19 10 1 1.000 2 ==> 1
+ node_19 --> node_14 9 1 0.500 2 --> 1
+ node_14 --> H009 12 1 0.333 2 ==> 1
+ node_19 --> node_18 11 1 0.500 2 ==> 1
+ node_18 --> node_17 9 1 0.500 2 --> 1
+ node_17 --> node_16 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_16 --> node_15 11 1 0.500 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ node_22 --> H001 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ node_24 --> node_23 3 1 1.000 2 ==> 1
+ node_23 --> H003 4 1 1.000 2 ==> 1
+ node_23 --> H005 12 1 0.333 2 ==> 1
+ node_25 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 74:
+
+Branch lengths and linkages for tree #74
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 25 root 0 0 0
+ 24 25 0 0 0
+ 22 24 0 0 2
+ 21 22 2 2 2
+ 20 21 3 1 3
+ 19 20 1 1 2
+ 18 19 1 1 1
+ 17 18 0 0 1
+H002 (1) 17 0 0 0
+ 16 17 0 0 1
+ 15 16 2 2 2
+H007 (3) 15 1 0 1
+ 14 15 0 0 1
+H012 (10) 14 1 1 1
+H011 (13) 14 0 0 0
+H009 (11) 16 1 0 1
+H006 (12) 18 1 0 1
+H008 (4) 19 1 0 1
+H014 (5) 20 0 0 0
+H001 (7) 21 0 0 2
+H013 (6) 22 2 0 2
+ 23 24 1 1 1
+H003 (8) 23 1 1 1
+H005 (9) 23 1 1 1
+H010 (2) 25 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /------------------------ H002
+ |
+ | /------------ H007
+ /----17 |
+ | | /----15 /------ H012
+ | | | \----14
+ | \----16 \------ H011
+ /----18 |
+ | | \------------------ H009
+ | |
+ /-----19 \------------------------------ H006
+ | |
+ /----20 \------------------------------------ H008
+ | |
+ /----21 \------------------------------------------- H014
+ | |
+ /----22 \------------------------------------------------- H001
+ | |
+ | \------------------------------------------------------- H013
+ /----24
+ | | /------ H003
+ | \-----------------------------------------------------23
+-----25 \------ H005
+ |
+ \------------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_21 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_21 --> node_20 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_20 --> node_19 10 1 1.000 2 ==> 1
+ node_19 --> node_18 9 1 1.000 2 ==> 1
+ node_16 --> node_15 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 --> 1
+ node_14 --> H012 11 1 0.333 2 ==> 1
+ node_16 --> H009 12 1 0.333 2 --> 1
+ node_18 --> H006 11 1 0.333 2 --> 1
+ node_19 --> H008 11 1 0.333 2 --> 1
+ node_22 --> H013 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ node_24 --> node_23 3 1 1.000 2 ==> 1
+ node_23 --> H003 4 1 1.000 2 ==> 1
+ node_23 --> H005 12 1 0.333 2 ==> 1
+ node_25 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 75:
+
+Branch lengths and linkages for tree #75
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 25 root 0 0 0
+ 24 25 0 0 0
+ 22 24 0 0 2
+ 21 22 2 2 2
+ 20 21 3 1 3
+ 19 20 1 1 2
+ 18 19 1 1 1
+ 17 18 0 0 1
+ 14 17 0 0 1
+H002 (1) 14 0 0 0
+H009 (11) 14 1 1 1
+ 16 17 2 2 2
+ 15 16 0 0 1
+H007 (3) 15 1 1 1
+H011 (13) 15 0 0 0
+H012 (10) 16 1 0 1
+H006 (12) 18 1 0 1
+H008 (4) 19 1 0 1
+H014 (5) 20 0 0 0
+H001 (7) 21 0 0 2
+H013 (6) 22 2 0 2
+ 23 24 1 1 1
+H003 (8) 23 1 1 1
+H005 (9) 23 1 1 1
+H010 (2) 25 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /------- H002
+ /-----------14
+ | \------- H009
+ |
+ /-----17 /------- H007
+ | | /----15
+ | | | \------- H011
+ /----18 \-----16
+ | | \------------- H012
+ | |
+ /-----19 \--------------------------- H006
+ | |
+ /----20 \--------------------------------- H008
+ | |
+ /-----21 \---------------------------------------- H014
+ | |
+ /-----22 \---------------------------------------------- H001
+ | |
+ | \----------------------------------------------------- H013
+ /----24
+ | | /------- H003
+ | \---------------------------------------------------23
+------25 \------- H005
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_21 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_21 --> node_20 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_20 --> node_19 10 1 1.000 2 ==> 1
+ node_19 --> node_18 9 1 1.000 2 ==> 1
+ node_14 --> H009 12 1 0.333 2 ==> 1
+ node_17 --> node_16 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ node_16 --> H012 11 1 0.333 2 --> 1
+ node_18 --> H006 11 1 0.333 2 --> 1
+ node_19 --> H008 11 1 0.333 2 --> 1
+ node_22 --> H013 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ node_24 --> node_23 3 1 1.000 2 ==> 1
+ node_23 --> H003 4 1 1.000 2 ==> 1
+ node_23 --> H005 12 1 0.333 2 ==> 1
+ node_25 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 76:
+
+Branch lengths and linkages for tree #76
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 25 root 0 0 0
+ 24 25 0 0 0
+ 22 24 0 0 2
+ 21 22 2 2 2
+ 20 21 3 1 3
+ 19 20 1 1 2
+ 18 19 1 1 1
+ 14 18 0 0 1
+H002 (1) 14 0 0 0
+H009 (11) 14 1 1 1
+ 17 18 0 0 1
+ 16 17 2 2 2
+ 15 16 0 0 1
+H007 (3) 15 1 1 1
+H011 (13) 15 0 0 0
+H012 (10) 16 1 0 1
+H006 (12) 17 1 0 1
+H008 (4) 19 1 0 1
+H014 (5) 20 0 0 0
+H001 (7) 21 0 0 2
+H013 (6) 22 2 0 2
+ 23 24 1 1 1
+H003 (8) 23 1 1 1
+H005 (9) 23 1 1 1
+H010 (2) 25 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /------- H002
+ /------------------14
+ | \------- H009
+ |
+ | /------- H007
+ /----18 /----15
+ | | | \------- H011
+ | | /-----16
+ | | | \------------- H012
+ /-----19 \-----17
+ | | \-------------------- H006
+ | |
+ /----20 \--------------------------------- H008
+ | |
+ /-----21 \---------------------------------------- H014
+ | |
+ /-----22 \---------------------------------------------- H001
+ | |
+ | \----------------------------------------------------- H013
+ /----24
+ | | /------- H003
+ | \---------------------------------------------------23
+------25 \------- H005
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_21 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_21 --> node_20 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_20 --> node_19 10 1 1.000 2 ==> 1
+ node_19 --> node_18 9 1 1.000 2 ==> 1
+ node_14 --> H009 12 1 0.333 2 ==> 1
+ node_17 --> node_16 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ node_16 --> H012 11 1 0.333 2 --> 1
+ node_17 --> H006 11 1 0.333 2 --> 1
+ node_19 --> H008 11 1 0.333 2 --> 1
+ node_22 --> H013 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ node_24 --> node_23 3 1 1.000 2 ==> 1
+ node_23 --> H003 4 1 1.000 2 ==> 1
+ node_23 --> H005 12 1 0.333 2 ==> 1
+ node_25 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 77:
+
+Branch lengths and linkages for tree #77
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 24 root 0 0 0
+ 23 24 0 0 0
+ 21 23 0 0 2
+ 20 21 2 2 2
+ 19 20 3 1 3
+ 18 19 1 1 2
+ 17 18 1 1 1
+ 14 17 0 0 1
+H002 (1) 14 0 0 0
+H009 (11) 14 1 1 1
+ 16 17 2 2 2
+ 15 16 0 0 1
+H007 (3) 15 1 1 1
+H011 (13) 15 0 0 0
+H012 (10) 16 1 0 1
+H006 (12) 17 1 0 1
+H008 (4) 18 1 0 1
+H014 (5) 19 0 0 0
+H001 (7) 20 0 0 2
+H013 (6) 21 2 0 2
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (9) 22 1 1 1
+H010 (2) 24 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /------- H002
+ /-------------14
+ | \------- H009
+ |
+ | /------- H007
+ | /------15
+ /-----17 | \------- H011
+ | +-----16
+ | | \--------------- H012
+ /-----18 |
+ | | \---------------------- H006
+ | |
+ /------19 \----------------------------- H008
+ | |
+ /-----20 \------------------------------------ H014
+ | |
+ /-----21 \-------------------------------------------- H001
+ | |
+ | \--------------------------------------------------- H013
+ /------23
+ | | /------- H003
+ | \-------------------------------------------------22
+------24 \------- H005
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_20 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_20 --> node_19 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_19 --> node_18 10 1 1.000 2 ==> 1
+ node_18 --> node_17 9 1 1.000 2 ==> 1
+ node_14 --> H009 12 1 0.333 2 ==> 1
+ node_17 --> node_16 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ node_16 --> H012 11 1 0.333 2 --> 1
+ node_17 --> H006 11 1 0.333 2 --> 1
+ node_18 --> H008 11 1 0.333 2 --> 1
+ node_21 --> H013 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+ node_24 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 78:
+
+Branch lengths and linkages for tree #78
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 25 root 0 0 0
+ 24 25 0 0 0
+ 22 24 0 0 2
+ 21 22 2 2 2
+ 20 21 3 1 3
+ 19 20 1 1 2
+ 17 19 1 0 1
+H002 (1) 17 0 0 0
+ 16 17 0 0 1
+ 15 16 2 2 2
+H007 (3) 15 1 0 1
+ 14 15 0 0 1
+H012 (10) 14 1 1 1
+H011 (13) 14 0 0 0
+H009 (11) 16 1 0 1
+ 18 19 1 1 1
+H008 (4) 18 0 0 1
+H006 (12) 18 1 0 1
+H014 (5) 20 0 0 0
+H001 (7) 21 0 0 2
+H013 (6) 22 2 0 2
+ 23 24 1 1 1
+H003 (8) 23 1 1 1
+H005 (9) 23 1 1 1
+H010 (2) 25 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /--------------------------- H002
+ |
+ | /------------- H007
+ /----17 |
+ | | /-----15 /------- H012
+ | | | \----14
+ | \-----16 \------- H011
+ /-----19 |
+ | | \-------------------- H009
+ | |
+ | | /------- H008
+ /----20 \------------------------18
+ | | \------- H006
+ | |
+ /-----21 \---------------------------------------- H014
+ | |
+ /-----22 \---------------------------------------------- H001
+ | |
+ | \----------------------------------------------------- H013
+ /----24
+ | | /------- H003
+ | \---------------------------------------------------23
+------25 \------- H005
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_21 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_21 --> node_20 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_20 --> node_19 10 1 1.000 2 ==> 1
+ node_19 --> node_17 9 1 0.500 2 --> 1
+ node_16 --> node_15 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 --> 1
+ node_14 --> H012 11 1 0.500 2 ==> 1
+ node_16 --> H009 12 1 0.333 2 --> 1
+ node_19 --> node_18 11 1 0.500 2 ==> 1
+ node_18 --> H006 9 1 0.500 2 --> 1
+ node_22 --> H013 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ node_24 --> node_23 3 1 1.000 2 ==> 1
+ node_23 --> H003 4 1 1.000 2 ==> 1
+ node_23 --> H005 12 1 0.333 2 ==> 1
+ node_25 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 79:
+
+Branch lengths and linkages for tree #79
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 22 23 0 0 0
+ 20 22 2 2 2
+ 19 20 3 3 3
+ 18 19 1 1 1
+ 17 18 1 1 1
+H002 (1) 17 0 0 0
+ 16 17 0 0 1
+ 15 16 2 2 2
+H007 (3) 15 1 0 1
+ 14 15 0 0 1
+H012 (10) 14 1 1 1
+H011 (13) 14 0 0 0
+H009 (11) 16 1 0 1
+H006 (12) 17 1 1 1
+H008 (4) 18 1 1 1
+H014 (5) 19 0 0 0
+H013 (6) 20 0 0 0
+H001 (7) 22 2 2 2
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (9) 21 1 1 1
+H010 (2) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /----------------------------- H002
+ |
+ | /--------------- H007
+ | |
+ | /-----15 /------- H012
+ /-----17 | \------14
+ | +-----16 \------- H011
+ | | |
+ | | \---------------------- H009
+ /------18 |
+ | | \----------------------------- H006
+ | |
+ /-----19 \------------------------------------ H008
+ | |
+ /-----20 \-------------------------------------------- H014
+ | |
+ | \--------------------------------------------------- H013
+ |
+ /------22---------------------------------------------------------- H001
+ | |
+ | | /------- H003
+------23 \-------------------------------------------------21
+ | \------- H005
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_20 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_20 --> node_19 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_19 --> node_18 10 1 1.000 2 ==> 1
+ node_18 --> node_17 9 1 1.000 2 ==> 1
+ node_16 --> node_15 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 --> 1
+ node_14 --> H012 11 1 0.333 2 ==> 1
+ node_16 --> H009 12 1 0.333 2 --> 1
+ node_17 --> H006 11 1 0.333 2 ==> 1
+ node_18 --> H008 11 1 0.333 2 ==> 1
+ node_22 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 80:
+
+Branch lengths and linkages for tree #80
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 24 root 0 0 0
+ 23 24 0 0 0
+ 21 23 2 2 2
+ 20 21 3 3 3
+ 19 20 1 1 2
+ 17 19 1 0 1
+H002 (1) 17 0 0 0
+ 16 17 0 0 1
+ 15 16 2 2 2
+H007 (3) 15 1 0 1
+ 14 15 0 0 1
+H012 (10) 14 1 1 1
+H011 (13) 14 0 0 0
+H009 (11) 16 1 0 1
+ 18 19 1 1 1
+H008 (4) 18 0 0 1
+H006 (12) 18 1 0 1
+H014 (5) 20 0 0 0
+H001 (7) 21 0 0 0
+H013 (6) 23 2 2 2
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (9) 22 1 1 1
+H010 (2) 24 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /----------------------------- H002
+ |
+ | /--------------- H007
+ /-----17 |
+ | | /-----15 /------- H012
+ | | | \------14
+ | \-----16 \------- H011
+ /------19 |
+ | | \---------------------- H009
+ | |
+ | | /------- H008
+ /-----20 \---------------------------18
+ | | \------- H006
+ | |
+ /-----21 \-------------------------------------------- H014
+ | |
+ | \--------------------------------------------------- H001
+ |
+ /------23---------------------------------------------------------- H013
+ | |
+ | | /------- H003
+------24 \-------------------------------------------------22
+ | \------- H005
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_21 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_21 --> node_20 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_20 --> node_19 10 1 1.000 2 ==> 1
+ node_19 --> node_17 9 1 0.500 2 --> 1
+ node_16 --> node_15 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 --> 1
+ node_14 --> H012 11 1 0.500 2 ==> 1
+ node_16 --> H009 12 1 0.333 2 --> 1
+ node_19 --> node_18 11 1 0.500 2 ==> 1
+ node_18 --> H006 9 1 0.500 2 --> 1
+ node_23 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+ node_24 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 81:
+
+Branch lengths and linkages for tree #81
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 22 23 0 0 0
+ 20 22 2 2 2
+ 19 20 3 3 3
+ 18 19 1 1 1
+ 17 18 1 1 1
+H002 (1) 17 0 0 0
+ 16 17 0 0 1
+ 15 16 2 2 2
+H007 (3) 15 1 0 1
+ 14 15 0 0 1
+H012 (10) 14 1 1 1
+H011 (13) 14 0 0 0
+H009 (11) 16 1 0 1
+H006 (12) 17 1 1 1
+H008 (4) 18 1 1 1
+H014 (5) 19 0 0 0
+H001 (7) 20 0 0 0
+H013 (6) 22 2 2 2
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (9) 21 1 1 1
+H010 (2) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /----------------------------- H002
+ |
+ | /--------------- H007
+ | |
+ | /-----15 /------- H012
+ /-----17 | \------14
+ | +-----16 \------- H011
+ | | |
+ | | \---------------------- H009
+ /------18 |
+ | | \----------------------------- H006
+ | |
+ /-----19 \------------------------------------ H008
+ | |
+ /-----20 \-------------------------------------------- H014
+ | |
+ | \--------------------------------------------------- H001
+ |
+ /------22---------------------------------------------------------- H013
+ | |
+ | | /------- H003
+------23 \-------------------------------------------------21
+ | \------- H005
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_20 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_20 --> node_19 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_19 --> node_18 10 1 1.000 2 ==> 1
+ node_18 --> node_17 9 1 1.000 2 ==> 1
+ node_16 --> node_15 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 --> 1
+ node_14 --> H012 11 1 0.333 2 ==> 1
+ node_16 --> H009 12 1 0.333 2 --> 1
+ node_17 --> H006 11 1 0.333 2 ==> 1
+ node_18 --> H008 11 1 0.333 2 ==> 1
+ node_22 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 82:
+
+Branch lengths and linkages for tree #82
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 24 root 0 0 0
+ 23 24 0 0 0
+ 21 23 2 2 2
+ 20 21 3 3 3
+ 19 20 1 1 2
+ 14 19 1 0 1
+H002 (1) 14 0 0 0
+H009 (11) 14 1 1 1
+ 18 19 1 1 1
+ 17 18 1 0 1
+ 16 17 2 2 2
+ 15 16 1 1 1
+H007 (3) 15 1 1 1
+H011 (13) 15 0 0 0
+H012 (10) 16 0 0 0
+H006 (12) 17 0 0 0
+H008 (4) 18 0 0 1
+H014 (5) 20 0 0 0
+H001 (7) 21 0 0 0
+H013 (6) 23 2 2 2
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (9) 22 1 1 1
+H010 (2) 24 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /------- H002
+ /---------------------------14
+ | \------- H009
+ |
+ | /------- H007
+ | /------15
+ /------19 | \------- H011
+ | | /-----16
+ | | | \--------------- H012
+ | | /-----17
+ /-----20 | | \---------------------- H006
+ | | \-----18
+ | | \----------------------------- H008
+ /-----21 |
+ | | \-------------------------------------------- H014
+ | |
+ | \--------------------------------------------------- H001
+ /------23
+ | +---------------------------------------------------------- H013
+ | |
+ | | /------- H003
+------24 \-------------------------------------------------22
+ | \------- H005
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_21 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_21 --> node_20 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_20 --> node_19 10 1 1.000 2 ==> 1
+ node_19 --> node_14 9 1 0.500 2 --> 1
+ node_14 --> H009 12 1 0.333 2 ==> 1
+ node_19 --> node_18 11 1 0.500 2 ==> 1
+ node_18 --> node_17 9 1 0.500 2 --> 1
+ node_17 --> node_16 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_16 --> node_15 11 1 0.500 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ node_23 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+ node_24 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 83:
+
+Branch lengths and linkages for tree #83
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 22 23 0 0 0
+ 20 22 2 2 2
+ 19 20 3 3 3
+ 18 19 1 1 1
+ 17 18 1 1 1
+H002 (1) 17 0 0 0
+ 16 17 0 0 1
+ 15 16 2 2 2
+ 14 15 0 0 1
+H007 (3) 14 1 1 1
+H011 (13) 14 0 0 0
+H012 (10) 15 1 0 1
+H006 (12) 16 1 0 1
+H009 (11) 17 1 1 1
+H008 (4) 18 1 1 1
+H014 (5) 19 0 0 0
+H013 (6) 20 0 0 0
+H001 (7) 22 2 2 2
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (9) 21 1 1 1
+H010 (2) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /----------------------------- H002
+ |
+ | /------- H007
+ | /------14
+ | | \------- H011
+ /-----17 /-----15
+ | | | \--------------- H012
+ | +-----16
+ | | \---------------------- H006
+ /------18 |
+ | | \----------------------------- H009
+ | |
+ /-----19 \------------------------------------ H008
+ | |
+ /-----20 \-------------------------------------------- H014
+ | |
+ | \--------------------------------------------------- H013
+ |
+ /------22---------------------------------------------------------- H001
+ | |
+ | | /------- H003
+------23 \-------------------------------------------------21
+ | \------- H005
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_20 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_20 --> node_19 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_19 --> node_18 10 1 1.000 2 ==> 1
+ node_18 --> node_17 9 1 1.000 2 ==> 1
+ node_16 --> node_15 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_14 --> H007 12 1 0.333 2 ==> 1
+ node_15 --> H012 11 1 0.333 2 --> 1
+ node_16 --> H006 11 1 0.333 2 --> 1
+ node_17 --> H009 12 1 0.333 2 ==> 1
+ node_18 --> H008 11 1 0.333 2 ==> 1
+ node_22 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 84:
+
+Branch lengths and linkages for tree #84
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 22 23 0 0 0
+ 20 22 2 2 2
+ 19 20 3 3 3
+ 18 19 1 1 1
+ 17 18 1 1 1
+H002 (1) 17 0 0 0
+ 16 17 0 0 1
+ 15 16 2 2 2
+ 14 15 0 0 1
+H007 (3) 14 1 1 1
+H011 (13) 14 0 0 0
+H012 (10) 15 1 0 1
+H006 (12) 16 1 0 1
+H009 (11) 17 1 1 1
+H008 (4) 18 1 1 1
+H014 (5) 19 0 0 0
+H001 (7) 20 0 0 0
+H013 (6) 22 2 2 2
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (9) 21 1 1 1
+H010 (2) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /----------------------------- H002
+ |
+ | /------- H007
+ | /------14
+ | | \------- H011
+ /-----17 /-----15
+ | | | \--------------- H012
+ | +-----16
+ | | \---------------------- H006
+ /------18 |
+ | | \----------------------------- H009
+ | |
+ /-----19 \------------------------------------ H008
+ | |
+ /-----20 \-------------------------------------------- H014
+ | |
+ | \--------------------------------------------------- H001
+ |
+ /------22---------------------------------------------------------- H013
+ | |
+ | | /------- H003
+------23 \-------------------------------------------------21
+ | \------- H005
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_20 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_20 --> node_19 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_19 --> node_18 10 1 1.000 2 ==> 1
+ node_18 --> node_17 9 1 1.000 2 ==> 1
+ node_16 --> node_15 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_14 --> H007 12 1 0.333 2 ==> 1
+ node_15 --> H012 11 1 0.333 2 --> 1
+ node_16 --> H006 11 1 0.333 2 --> 1
+ node_17 --> H009 12 1 0.333 2 ==> 1
+ node_18 --> H008 11 1 0.333 2 ==> 1
+ node_22 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 85:
+
+Branch lengths and linkages for tree #85
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 24 root 0 0 0
+ 23 24 0 0 0
+ 21 23 0 0 2
+ 20 21 2 2 2
+ 19 20 3 1 3
+ 18 19 2 2 2
+H002 (1) 18 0 0 0
+ 17 18 0 0 1
+ 15 17 2 2 2
+ 14 15 0 0 1
+H007 (3) 14 1 1 1
+H011 (13) 14 0 0 0
+H012 (10) 15 1 0 1
+ 16 17 1 0 1
+H008 (4) 16 1 1 1
+H006 (12) 16 0 0 0
+H009 (11) 18 1 1 1
+H014 (5) 19 0 0 0
+H001 (7) 20 0 0 2
+H013 (6) 21 2 0 2
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (9) 22 1 1 1
+H010 (2) 24 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /----------------------------- H002
+ |
+ | /------- H007
+ | /------14
+ | | \------- H011
+ | /-----15
+ /-----18 | \--------------- H012
+ | +-----17
+ | | | /------- H008
+ | | \-------------16
+ /------19 | \------- H006
+ | | |
+ | | \----------------------------- H009
+ /-----20 |
+ | | \------------------------------------ H014
+ | |
+ /-----21 \-------------------------------------------- H001
+ | |
+ | \--------------------------------------------------- H013
+ /------23
+ | | /------- H003
+ | \-------------------------------------------------22
+------24 \------- H005
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_20 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_20 --> node_19 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_19 --> node_18 9 1 0.500 2 ==> 1
+ 10 1 1.000 2 ==> 1
+ node_17 --> node_15 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_14 --> H007 12 1 0.333 2 ==> 1
+ node_15 --> H012 11 1 0.500 2 --> 1
+ node_17 --> node_16 11 1 0.500 2 --> 1
+ node_16 --> H008 9 1 0.500 1 ==> 2
+ node_18 --> H009 12 1 0.333 2 ==> 1
+ node_21 --> H013 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+ node_24 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 86:
+
+Branch lengths and linkages for tree #86
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 25 root 0 0 0
+ 24 25 0 0 0
+ 22 24 0 0 2
+ 21 22 2 2 2
+ 20 21 3 1 3
+ 19 20 1 1 2
+ 14 19 1 0 1
+H002 (1) 14 0 0 0
+H009 (11) 14 1 1 1
+ 18 19 1 1 1
+ 17 18 1 0 1
+ 16 17 2 2 2
+ 15 16 1 1 1
+H007 (3) 15 1 1 1
+H011 (13) 15 0 0 0
+H012 (10) 16 0 0 0
+H006 (12) 17 0 0 0
+H008 (4) 18 0 0 1
+H014 (5) 20 0 0 0
+H001 (7) 21 0 0 2
+H013 (6) 22 2 0 2
+ 23 24 1 1 1
+H003 (8) 23 1 1 1
+H005 (9) 23 1 1 1
+H010 (2) 25 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /------- H002
+ /------------------------14
+ | \------- H009
+ |
+ | /------- H007
+ | /----15
+ /-----19 | \------- H011
+ | | /-----16
+ | | | \------------- H012
+ | | /-----17
+ /----20 | | \-------------------- H006
+ | | \----18
+ | | \--------------------------- H008
+ /-----21 |
+ | | \---------------------------------------- H014
+ | |
+ /-----22 \---------------------------------------------- H001
+ | |
+ | \----------------------------------------------------- H013
+ /----24
+ | | /------- H003
+ | \---------------------------------------------------23
+------25 \------- H005
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_21 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_21 --> node_20 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_20 --> node_19 10 1 1.000 2 ==> 1
+ node_19 --> node_14 9 1 0.500 2 --> 1
+ node_14 --> H009 12 1 0.333 2 ==> 1
+ node_19 --> node_18 11 1 0.500 2 ==> 1
+ node_18 --> node_17 9 1 0.500 2 --> 1
+ node_17 --> node_16 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_16 --> node_15 11 1 0.500 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ node_22 --> H013 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ node_24 --> node_23 3 1 1.000 2 ==> 1
+ node_23 --> H003 4 1 1.000 2 ==> 1
+ node_23 --> H005 12 1 0.333 2 ==> 1
+ node_25 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 87:
+
+Branch lengths and linkages for tree #87
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 22 23 0 0 0
+ 20 22 2 2 2
+ 19 20 3 3 3
+ 18 19 2 2 2
+H002 (1) 18 0 0 0
+ 17 18 0 0 1
+ 15 17 2 2 2
+ 14 15 0 0 1
+H007 (3) 14 1 1 1
+H011 (13) 14 0 0 0
+H012 (10) 15 1 0 1
+ 16 17 1 0 1
+H008 (4) 16 1 1 1
+H006 (12) 16 0 0 0
+H009 (11) 18 1 1 1
+H014 (5) 19 0 0 0
+H001 (7) 20 0 0 0
+H013 (6) 22 2 2 2
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (9) 21 1 1 1
+H010 (2) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /-------------------------------- H002
+ |
+ | /-------- H007
+ | /------14
+ | | \-------- H011
+ | /------15
+ /-------18 | \---------------- H012
+ | +------17
+ | | | /-------- H008
+ | | \--------------16
+ /------19 | \-------- H006
+ | | |
+ | | \-------------------------------- H009
+ /------20 |
+ | | \----------------------------------------- H014
+ | |
+ | \------------------------------------------------- H001
+ /------22
+ | +--------------------------------------------------------- H013
+ | |
+ | | /-------- H003
+-------23 \-----------------------------------------------21
+ | \-------- H005
+ |
+ \----------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_20 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_20 --> node_19 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_19 --> node_18 9 1 0.500 2 ==> 1
+ 10 1 1.000 2 ==> 1
+ node_17 --> node_15 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_14 --> H007 12 1 0.333 2 ==> 1
+ node_15 --> H012 11 1 0.500 2 --> 1
+ node_17 --> node_16 11 1 0.500 2 --> 1
+ node_16 --> H008 9 1 0.500 1 ==> 2
+ node_18 --> H009 12 1 0.333 2 ==> 1
+ node_22 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 88:
+
+Branch lengths and linkages for tree #88
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 22 23 0 0 0
+ 20 22 0 0 2
+ 19 20 2 2 2
+ 18 19 3 1 3
+ 17 18 2 2 2
+H002 (1) 17 0 0 0
+ 16 17 1 1 1
+ 15 16 2 2 2
+ 14 15 1 1 1
+H007 (3) 14 1 1 1
+H011 (13) 14 0 0 0
+H012 (10) 15 0 0 0
+H008 (4) 16 1 1 1
+H006 (12) 16 0 0 0
+H009 (11) 17 1 1 1
+H014 (5) 18 0 0 0
+H001 (7) 19 0 0 2
+H013 (6) 20 2 0 2
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (9) 21 1 1 1
+H010 (2) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /----------------------------- H002
+ |
+ | /------- H007
+ | /------14
+ | | \------- H011
+ | /-----15
+ /-----17 | \--------------- H012
+ | | |
+ | +-----16---------------------- H008
+ | | |
+ /------18 | \---------------------- H006
+ | | |
+ | | \----------------------------- H009
+ /-----19 |
+ | | \------------------------------------ H014
+ | |
+ /-----20 \-------------------------------------------- H001
+ | |
+ | \--------------------------------------------------- H013
+ /------22
+ | | /------- H003
+ | \-------------------------------------------------21
+------23 \------- H005
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_20 --> node_19 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_19 --> node_18 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_18 --> node_17 9 1 0.500 2 ==> 1
+ 10 1 1.000 2 ==> 1
+ node_17 --> node_16 11 1 0.500 2 ==> 1
+ node_16 --> node_15 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_15 --> node_14 11 1 0.500 1 ==> 2
+ node_14 --> H007 12 1 0.333 2 ==> 1
+ node_16 --> H008 9 1 0.500 1 ==> 2
+ node_17 --> H009 12 1 0.333 2 ==> 1
+ node_20 --> H013 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 89:
+
+Branch lengths and linkages for tree #89
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 22 root 0 0 0
+ 21 22 0 0 0
+ 19 21 2 2 2
+ 18 19 3 3 3
+ 17 18 2 2 2
+H002 (1) 17 0 0 0
+ 16 17 1 1 1
+ 15 16 2 2 2
+ 14 15 1 1 1
+H007 (3) 14 1 1 1
+H011 (13) 14 0 0 0
+H012 (10) 15 0 0 0
+H008 (4) 16 1 1 1
+H006 (12) 16 0 0 0
+H009 (11) 17 1 1 1
+H014 (5) 18 0 0 0
+H001 (7) 19 0 0 0
+H013 (6) 21 2 2 2
+ 20 21 1 1 1
+H003 (8) 20 1 1 1
+H005 (9) 20 1 1 1
+H010 (2) 22 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /-------------------------------- H002
+ |
+ | /-------- H007
+ | /------14
+ | | \-------- H011
+ | /------15
+ /-------17 | \---------------- H012
+ | | |
+ | +------16------------------------ H008
+ | | |
+ /------18 | \------------------------ H006
+ | | |
+ | | \-------------------------------- H009
+ /------19 |
+ | | \----------------------------------------- H014
+ | |
+ | \------------------------------------------------- H001
+ /------21
+ | +--------------------------------------------------------- H013
+ | |
+ | | /-------- H003
+-------22 \-----------------------------------------------20
+ | \-------- H005
+ |
+ \----------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_19 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_19 --> node_18 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_18 --> node_17 9 1 0.500 2 ==> 1
+ 10 1 1.000 2 ==> 1
+ node_17 --> node_16 11 1 0.500 2 ==> 1
+ node_16 --> node_15 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_15 --> node_14 11 1 0.500 1 ==> 2
+ node_14 --> H007 12 1 0.333 2 ==> 1
+ node_16 --> H008 9 1 0.500 1 ==> 2
+ node_17 --> H009 12 1 0.333 2 ==> 1
+ node_21 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ node_21 --> node_20 3 1 1.000 2 ==> 1
+ node_20 --> H003 4 1 1.000 2 ==> 1
+ node_20 --> H005 12 1 0.333 2 ==> 1
+ node_22 --> H010 5 1 1.000 2 ==> 1
diff --git a/trunk/test/paup/ancestor_absent/association/test.tree b/trunk/test/paup/ancestor_absent/association/test.tree
new file mode 100644
index 0000000000000000000000000000000000000000..2398457015388e5f96c8f9a4297f7c51d1851baf
--- /dev/null
+++ b/trunk/test/paup/ancestor_absent/association/test.tree
@@ -0,0 +1,120 @@
+#NEXUS
+
+Begin trees; [Treefile saved Thu Jan 12 21:56:20 2006]
+[!
+>Data file = /home/cbardel/recherche/logiciel/altree/test/paup/ancestor_absent/association/caco.paup
+>Heuristic search settings:
+> Optimality criterion = parsimony
+> Character-status summary:
+> Of 12 total characters:
+> All characters are of type 'unord'
+> All characters have equal weight
+> 2 characters are parsimony-uninformative
+> Number of parsimony-informative characters = 10
+> Starting tree(s) obtained via stepwise addition
+> Addition sequence: simple (reference taxon = H002)
+> Number of trees held at each step during stepwise addition = 1
+> Branch-swapping algorithm: tree-bisection-reconnection (TBR)
+> Steepest descent option not in effect
+> 'MaxTrees' setting = 2000 (will not be increased)
+> Branches collapsed (creating polytomies) if maximum branch length is zero
+> 'MulTrees' option in effect
+> Topological constraints not enforced
+> Trees are unrooted
+>
+>Heuristic search completed
+> Total number of rearrangements tried = 69978
+> Score of best tree(s) found = 20
+> Number of trees retained = 89
+> Time used = 1 sec (CPU time = 0.09 sec)
+]
+tree PAUP_1 = [&R] (((((H002,(H008,H014),H009,H006),H007,H012,H011),H013),H001,(H003,H005)),H010);
+tree PAUP_2 = [&R] (((((((H002,(H007,H012,H011),H009,H006),H008),H014),H013),H001),(H003,H005)),H010);
+tree PAUP_3 = [&R] (((((H002,((H008,H014),H006),H009),H007,H012,H011),H013),H001,(H003,H005)),H010);
+tree PAUP_4 = [&R] (((((((H002,H009),(H008,H014),H006),H012),H007,H011),H013),H001,(H003,H005)),H010);
+tree PAUP_5 = [&R] (((((((H002,H009),((H008,H014),H006)),H012),H007,H011),H013),H001,(H003,H005)),H010);
+tree PAUP_6 = [&R] ((((((H002,H009,H006),(H008,H014)),(H007,H012,H011)),H013),H001,(H003,H005)),H010);
+tree PAUP_7 = [&R] ((((((H002,H009,H006),H008,H014),(H007,H012,H011)),H013),H001,(H003,H005)),H010);
+tree PAUP_8 = [&R] ((((((((H002,H009),H006),H008),H014),(H007,H012,H011)),H013),H001,(H003,H005)),H010);
+tree PAUP_9 = [&R] (((((((H002,((H008,H014),H006)),H009),H007),H012,H011),H013),H001,(H003,H005)),H010);
+tree PAUP_10 = [&R] (((((H002,((H008,H006),H014),H009),H007,H012,H011),H013),H001,(H003,H005)),H010);
+tree PAUP_11 = [&R] ((((((((H002,H009),(H008,H014)),H006),H012),H007,H011),H013),H001,(H003,H005)),H010);
+tree PAUP_12 = [&R] (((((H002,(H008,H006),H014,H009),H007,H012,H011),H013),H001,(H003,H005)),H010);
+tree PAUP_13 = [&R] (((((((H002,(H007,H012,H011),H009,H006),H008),H014),H001),H013),(H003,H005)),H010);
+tree PAUP_14 = [&R] ((((((((H002,(H007,H012,H011),H009),H006),H008),H014),H013),H001),(H003,H005)),H010);
+tree PAUP_15 = [&R] ((((((H002,(H007,H012,H011),(H008,H006),H009),H014),H013),H001),(H003,H005)),H010);
+tree PAUP_16 = [&R] (((((((H002,(H008,H006),H009),(H007,H012,H011)),H014),H013),H001),(H003,H005)),H010);
+tree PAUP_17 = [&R] ((((((H002,(H008,H006),H009),H007,H012,H011),H014),H013),H001,(H003,H005)),H010);
+tree PAUP_18 = [&R] (((((((H002,(H007,H012,H011),H009),H006),H008),H014),H001),H013,(H003,H005)),H010);
+tree PAUP_19 = [&R] (((((((H002,(H007,H012,H011),H009),(H008,H006)),H014),H013),H001),(H003,H005)),H010);
+tree PAUP_20 = [&R] ((((((((H002,(H007,H012,H011),H009),H006),H008),H014),H001),H013),(H003,H005)),H010);
+tree PAUP_21 = [&R] (((((((H002,(((H007,H011),H012),H006),H009),H008),H014),H013),H001),(H003,H005)),H010);
+tree PAUP_22 = [&R] (((((((H002,(H007,H012,H011),H009),H006),H008),H014),H013),H001,(H003,H005)),H010);
+tree PAUP_23 = [&R] (((((((((H002,H009),((H007,H011),H012)),H006),H008),H014),H013),H001),(H003,H005)),H010);
+tree PAUP_24 = [&R] ((((((((H002,H009),(((H007,H011),H012),H006)),H008),H014),H013),H001),(H003,H005)),H010);
+tree PAUP_25 = [&R] ((((((((H002,H009),((H007,H011),H012),H006),H008),H014),H013),H001),(H003,H005)),H010);
+tree PAUP_26 = [&R] ((((((((H002,((H007,(H012,H011)),H009)),H006),H008),H014),H013),H001),(H003,H005)),H010);
+tree PAUP_27 = [&R] (((((((H002,(H008,H014),H006),H009),H007),H012,H011),H013),H001,(H003,H005)),H010);
+tree PAUP_28 = [&R] (((((((H002,(H008,H006),H014),H009),H007),H012,H011),H013),H001,(H003,H005)),H010);
+tree PAUP_29 = [&R] (((((((H002,((H008,H006),H014)),H009),H007),H012,H011),H013),H001,(H003,H005)),H010);
+tree PAUP_30 = [&R] (((((((H002,((H007,(H012,H011)),H009)),H006),H008),H014),H013),H001,(H003,H005)),H010);
+tree PAUP_31 = [&R] (((((((H002,((H007,(H012,H011)),H009)),H006),H008),H014),H001),H013,(H003,H005)),H010);
+tree PAUP_32 = [&R] ((((((((H002,(H008,H006)),H009),H007),H012,H011),H014),H013),H001,(H003,H005)),H010);
+tree PAUP_33 = [&R] (((((((((H002,H009),H014),H008),H006),H012),H007,H011),H013),H001,(H003,H005)),H010);
+tree PAUP_34 = [&R] (((((((H002,(H008,H014),H009),H006),H012),H007,H011),H013),H001,(H003,H005)),H010);
+tree PAUP_35 = [&R] ((((((((H002,H009),((H007,H011),H012)),H006),H008),H014),H013),H001,(H003,H005)),H010);
+tree PAUP_36 = [&R] (((((((H002,H014,H009),(H008,H006)),H012),H007,H011),H013),H001,(H003,H005)),H010);
+tree PAUP_37 = [&R] ((((((((H002,H009),(H008,H006)),H012),H007,H011),H014),H013),H001,(H003,H005)),H010);
+tree PAUP_38 = [&R] ((((((((H002,H009),((H007,H011),H012)),H006),H008),H014),H001),H013,(H003,H005)),H010);
+tree PAUP_39 = [&R] (((((((H002,H009,H006),H008),H014),(H007,H012,H011)),H013),H001,(H003,H005)),H010);
+tree PAUP_40 = [&R] ((((((H002,(H008,H006),H009),H014),(H007,H012,H011)),H013),H001,(H003,H005)),H010);
+tree PAUP_41 = [&R] ((((((H002,H009),((H008,H006),H014)),(H007,H012,H011)),H013),H001,(H003,H005)),H010);
+tree PAUP_42 = [&R] ((((((H002,H009),(H008,H006),H014),(H007,H012,H011)),H013),H001,(H003,H005)),H010);
+tree PAUP_43 = [&R] ((((((H002,(H008,H006),H009),(H007,H012,H011)),H014),H013),H001,(H003,H005)),H010);
+tree PAUP_44 = [&R] ((((((((H002,H009),H008,H006),H012),H007,H011),H014),H013),H001,(H003,H005)),H010);
+tree PAUP_45 = [&R] ((((((H002,(H007,H012,H011),H009,H006),H008),H014),H013),H001,(H003,H005)),H010);
+tree PAUP_46 = [&R] (((((((H002,H009),((H007,H011),H012),H006),H008),H014),H013),H001,(H003,H005)),H010);
+tree PAUP_47 = [&R] (((((((H002,H009),(((H007,H011),H012),H006)),H008),H014),H013),H001,(H003,H005)),H010);
+tree PAUP_48 = [&R] (((((((H002,H009),(H008,H006)),H014),(H007,H012,H011)),H013),H001,(H003,H005)),H010);
+tree PAUP_49 = [&R] (((((((H002,H014,H009),H008,H006),H012),H007,H011),H013),H001,(H003,H005)),H010);
+tree PAUP_50 = [&R] ((((((H002,(H007,H012,H011),H009),(H008,H006)),H014),H013),H001,(H003,H005)),H010);
+tree PAUP_51 = [&R] ((((((H002,(H007,H012,H011),H009),(H008,H006)),H014),H001),H013,(H003,H005)),H010);
+tree PAUP_52 = [&R] (((((((H002,H009),(((H007,H011),H012),H006)),H008),H014),H001),H013,(H003,H005)),H010);
+tree PAUP_53 = [&R] (((((((H002,(H007,H012,H011),H009),(H008,H006)),H014),H001),H013),(H003,H005)),H010);
+tree PAUP_54 = [&R] ((((((H002,(H007,H012,H011),(H008,H006),H009),H014),H001),H013),(H003,H005)),H010);
+tree PAUP_55 = [&R] (((((((H002,((H007,(H012,H011)),H009),H006),H008),H014),H001),H013),(H003,H005)),H010);
+tree PAUP_56 = [&R] (((((((H002,(((H007,H011),H012),H006),H009),H008),H014),H001),H013),(H003,H005)),H010);
+tree PAUP_57 = [&R] ((((((H002,(H007,H012,H011),H009,H006),H008),H014),H001),H013,(H003,H005)),H010);
+tree PAUP_58 = [&R] ((((((H002,((H007,(H012,H011)),H009),(H008,H006)),H014),H013),H001),(H003,H005)),H010);
+tree PAUP_59 = [&R] (((((((H002,((H007,(H012,H011)),H009)),(H008,H006)),H014),H013),H001),(H003,H005)),H010);
+tree PAUP_60 = [&R] (((((H002,((H007,(H012,H011)),H009),(H008,H006)),H014),H001),H013,(H003,H005)),H010);
+tree PAUP_61 = [&R] (((((((H002,((H007,(H012,H011)),H009),H006),H008),H014),H013),H001),(H003,H005)),H010);
+tree PAUP_62 = [&R] ((((((H002,(((H007,H011),H012),(H008,H006)),H009),H014),H013),H001),(H003,H005)),H010);
+tree PAUP_63 = [&R] ((((((H002,(((H007,H011),H012),H008,H006),H009),H014),H013),H001),(H003,H005)),H010);
+tree PAUP_64 = [&R] ((((((H002,((H007,(H012,H011)),H009),(H008,H006)),H014),H001),H013),(H003,H005)),H010);
+tree PAUP_65 = [&R] (((((H002,((H007,(H012,H011)),H009),(H008,H006)),H014),H013),H001,(H003,H005)),H010);
+tree PAUP_66 = [&R] (((((H002,(H007,H012,H011),(H008,H006),H009),H014),H001),H013,(H003,H005)),H010);
+tree PAUP_67 = [&R] (((((H002,(((H007,H011),H012),(H008,H006)),H009),H014),H013),H001,(H003,H005)),H010);
+tree PAUP_68 = [&R] ((((((H002,H009),((((H007,H011),H012),H006),H008)),H014),H013),H001,(H003,H005)),H010);
+tree PAUP_69 = [&R] (((((H002,(((H007,H011),H012),H008,H006),H009),H014),H013),H001,(H003,H005)),H010);
+tree PAUP_70 = [&R] (((((H002,(H007,H012,H011),(H008,H006),H009),H014),H013),H001,(H003,H005)),H010);
+tree PAUP_71 = [&R] ((((((H002,((H007,(H012,H011)),H009)),(H008,H006)),H014),H013),H001,(H003,H005)),H010);
+tree PAUP_72 = [&R] (((((((H002,H009),((H007,H011),H012),H006),H008),H014),H001),H013,(H003,H005)),H010);
+tree PAUP_73 = [&R] (((((((H002,H009),((((H007,H011),H012),H006),H008)),H014),H013),H001),(H003,H005)),H010);
+tree PAUP_74 = [&R] ((((((((H002,((H007,(H012,H011)),H009)),H006),H008),H014),H001),H013),(H003,H005)),H010);
+tree PAUP_75 = [&R] (((((((((H002,H009),((H007,H011),H012)),H006),H008),H014),H001),H013),(H003,H005)),H010);
+tree PAUP_76 = [&R] ((((((((H002,H009),(((H007,H011),H012),H006)),H008),H014),H001),H013),(H003,H005)),H010);
+tree PAUP_77 = [&R] ((((((((H002,H009),((H007,H011),H012),H006),H008),H014),H001),H013),(H003,H005)),H010);
+tree PAUP_78 = [&R] (((((((H002,((H007,(H012,H011)),H009)),(H008,H006)),H014),H001),H013),(H003,H005)),H010);
+tree PAUP_79 = [&R] ((((((H002,((H007,(H012,H011)),H009),H006),H008),H014),H013),H001,(H003,H005)),H010);
+tree PAUP_80 = [&R] ((((((H002,((H007,(H012,H011)),H009)),(H008,H006)),H014),H001),H013,(H003,H005)),H010);
+tree PAUP_81 = [&R] ((((((H002,((H007,(H012,H011)),H009),H006),H008),H014),H001),H013,(H003,H005)),H010);
+tree PAUP_82 = [&R] ((((((H002,H009),((((H007,H011),H012),H006),H008)),H014),H001),H013,(H003,H005)),H010);
+tree PAUP_83 = [&R] ((((((H002,(((H007,H011),H012),H006),H009),H008),H014),H013),H001,(H003,H005)),H010);
+tree PAUP_84 = [&R] ((((((H002,(((H007,H011),H012),H006),H009),H008),H014),H001),H013,(H003,H005)),H010);
+tree PAUP_85 = [&R] ((((((H002,(((H007,H011),H012),(H008,H006)),H009),H014),H001),H013),(H003,H005)),H010);
+tree PAUP_86 = [&R] (((((((H002,H009),((((H007,H011),H012),H006),H008)),H014),H001),H013),(H003,H005)),H010);
+tree PAUP_87 = [&R] (((((H002,(((H007,H011),H012),(H008,H006)),H009),H014),H001),H013,(H003,H005)),H010);
+tree PAUP_88 = [&R] ((((((H002,(((H007,H011),H012),H008,H006),H009),H014),H001),H013),(H003,H005)),H010);
+tree PAUP_89 = [&R] (((((H002,(((H007,H011),H012),H008,H006),H009),H014),H001),H013,(H003,H005)),H010);
+End;
diff --git a/trunk/test/paup/ancestor_absent/localisation/caco.loc b/trunk/test/paup/ancestor_absent/localisation/caco.loc
new file mode 100644
index 0000000000000000000000000000000000000000..594dd619605ee84b64c7432bc5ed49c278c31125
--- /dev/null
+++ b/trunk/test/paup/ancestor_absent/localisation/caco.loc
@@ -0,0 +1,27 @@
+Localisation method using S-character
+
+Results:
+site number 10 sens 2-->1 V_i = 3.47439614486152
+site number 9 sens 2-->1 V_i = 1.69733684958301
+site number 12 sens 1-->2 V_i = 0.87287156094397
+site number 3 sens 2-->1 V_i = -0.267261241912424
+site number 4 sens 2-->1 V_i = -0.267261241912424
+site number 8 sens 2-->1 V_i = -0.267261241912424
+site number 5 sens 2-->1 V_i = -0.267261241912424
+site number 3 sens 1-->2 V_i = -0.377964473009227
+site number 6 sens 2-->1 V_i = -0.377964473009227
+site number 4 sens 1-->2 V_i = -0.377964473009227
+site number 8 sens 1-->2 V_i = -0.377964473009227
+site number 10 sens 1-->2 V_i = -0.377964473009227
+site number 7 sens 2-->1 V_i = -0.377964473009227
+site number 5 sens 1-->2 V_i = -0.377964473009227
+site number 1 sens 2-->1 V_i = -0.462910049886276
+site number 1 sens 1-->2 V_i = -0.462910049886276
+site number 11 sens 2-->1 V_i = -0.462910049886276
+site number 11 sens 1-->2 V_i = -0.462910049886276
+site number 9 sens 1-->2 V_i = -0.462910049886276
+site number 2 sens 2-->1 V_i = -0.462910049886276
+site number 12 sens 2-->1 V_i = -0.462910049886276
+site number 2 sens 1-->2 V_i = -0.462910049886276
+site number 7 sens 1-->2 V_i = -0.534522483824849
+site number 6 sens 1-->2 V_i = -0.534522483824849
diff --git a/trunk/test/paup/ancestor_absent/localisation/caco.paup b/trunk/test/paup/ancestor_absent/localisation/caco.paup
new file mode 100644
index 0000000000000000000000000000000000000000..abc800ba7149df87be610570448844c27d607fbd
--- /dev/null
+++ b/trunk/test/paup/ancestor_absent/localisation/caco.paup
@@ -0,0 +1,37 @@
+#Nexus
+Begin data;
+dimension ntax=13 nchar=12;
+format symbols="0123456789" missing=?;
+matrix
+H002 112221111122
+H010 222212222222
+H007 222221111121
+H008 112221112112
+H014 112221112222
+H013 222221122222
+H001 112222222222
+H003 221122222222
+H005 221222222221
+H012 222221111112
+H009 112221111121
+H006 112221111112
+H011 222221111122
+;
+end;
+begin assumptions;
+ancstates *anc vector = 222222222222;
+end;
+begin paup;
+set nowarnreset autoclose maxtrees = 2000 increase= no [- Auto AutoInc = 100] monitor = no taxlabels = full
+root=lundberg warnroot=no opt=deltran [- acctran] ancstates=anc;
+hsearch;
+savetrees from=1 to=1000 file= test.tree root=yes format=altnexus;
+cleartrees nowarn=yes;
+gettrees rooted=yes file=test.tree;
+log file = test.res.log replace= yes [- no];
+describetrees all /plot=cladogram [- phylogram] brlens=yes
+rootmethod=lundberg apolist=yes;
+log stop;
+end;
+quit;
+[WARNING, this file is designed for bi-allelic data. If it is not the case, you may have to modify this input file, for example by specifying the ordered option in the typeset command in the assumption block]
diff --git a/trunk/test/paup/ancestor_absent/localisation/et_caco.paup b/trunk/test/paup/ancestor_absent/localisation/et_caco.paup
new file mode 100644
index 0000000000000000000000000000000000000000..409f3b5209514d26e00830a4ea96795c3fbcfa95
--- /dev/null
+++ b/trunk/test/paup/ancestor_absent/localisation/et_caco.paup
@@ -0,0 +1,39 @@
+#Nexus
+Begin data;
+dimension ntax=13 nchar=13;
+format symbols="0123456789CG" missing=?;
+matrix
+H002 112221111122?
+H010 222212222222?
+H007 2222211111210
+H008 1122211121121
+H014 112221112222?
+H013 2222211222220
+H001 112222222222?
+H003 221122222222?
+H005 221222222221?
+H012 2222211111120
+H009 1122211111211
+H006 1122211111121
+H011 2222211111221
+;
+end;
+begin assumptions;
+ancstates *anc vector = 222222222222?;
+end;
+begin paup;
+exclude 13;
+set nowarnreset autoclose maxtrees = 2000 increase= no [- Auto AutoInc = 100] monitor = no taxlabels = full
+root=lundberg warnroot=no opt=deltran [- acctran] ancstates=anc;
+hsearch;
+savetrees from=1 to=1000 file= test.tree root=yes format=altnexus;
+cleartrees nowarn=yes;
+gettrees rooted=yes file=test.tree;
+log file = test.res.log replace= yes [- no];
+include 13;
+describetrees all /plot=cladogram [- phylogram] brlens=yes
+rootmethod=lundberg apolist=yes;
+log stop;
+end;
+quit;
+[WARNING, this file is designed for bi-allelic data. If it is not the case, you may have to modify this input file, for example by specifying the ordered option in the typeset command in the assumption block]
diff --git a/trunk/test/paup/ancestor_absent/localisation/nb_cas_control.txt b/trunk/test/paup/ancestor_absent/localisation/nb_cas_control.txt
new file mode 100644
index 0000000000000000000000000000000000000000..ec9b7d90b0f6fc3983260c38f77f3bd42b037c09
--- /dev/null
+++ b/trunk/test/paup/ancestor_absent/localisation/nb_cas_control.txt
@@ -0,0 +1,13 @@
+H002 m008 c006
+H010 m007 c005
+H007 m007 c013
+H008 m009 c002
+H014 m004 c002
+H013 m002 c004
+H001 m011 c009
+H003 m005 c006
+H005 m007 c007
+H012 m001 c004
+H009 m008 c002
+H006 m028 c013
+H011 m005 c001
diff --git a/trunk/test/paup/ancestor_absent/localisation/run-prog b/trunk/test/paup/ancestor_absent/localisation/run-prog
new file mode 100755
index 0000000000000000000000000000000000000000..ca9ce4be29f16aae6e5f18fe623cce3d459101f0
--- /dev/null
+++ b/trunk/test/paup/ancestor_absent/localisation/run-prog
@@ -0,0 +1,16 @@
+#!/bin/sh -x
+
+# To add the character S
+# p=102 case haplotypes/176 haplotypes
+../../../../altree-add-S -i caco.paup -j \
+nb_cas_control.txt -o et_caco.paup -e 1 -t SNP -p 0.58
+
+# To run paup on the file containing the character S
+paup et_caco.paup
+
+# To perform the localisation test
+# All 89 equiparsimonious trees are analysed
+../../../../altree -i test.res.log \
+-j nb_cas_control.txt -t SNP -p paup --tree-to-analyse 89 \
+--s-site-number 13 --s-site-characters "0->1" \
+--co-evo double -l -o caco.loc
diff --git a/trunk/test/paup/ancestor_absent/localisation/test.res.log b/trunk/test/paup/ancestor_absent/localisation/test.res.log
new file mode 100644
index 0000000000000000000000000000000000000000..a9341df998047a3ca43340803f8d502d6ce78b69
--- /dev/null
+++ b/trunk/test/paup/ancestor_absent/localisation/test.res.log
@@ -0,0 +1,8540 @@
+
+P A U P *
+Portable version 4.0b10 for Unix
+Fri Jan 13 11:11:19 2006
+
+ -----------------------------NOTICE-----------------------------
+ This is a beta-test version. Please report any crashes,
+ apparent calculation errors, or other anomalous results.
+ There are no restrictions on publication of results obtained
+ with this version, but you should check the WWW site
+ frequently for bug announcements and/or updated versions.
+ See the README file on the distribution media for details.
+ ----------------------------------------------------------------
+
+Character-exclusion status changed:
+ 1 character re-included
+ Total number of characters now excluded = 0
+ Number of included characters = 13
+
+Tree description:
+
+ Optimality criterion = parsimony
+ Character-status summary:
+ Of 13 total characters:
+ All characters are of type 'unord'
+ All characters have equal weight
+ 2 characters are parsimony-uninformative
+ Number of parsimony-informative characters = 11
+ Character-state optimization: Delayed transformation (DELTRAN)
+ AncStates = "anc"
+
+Tree number 1:
+
+Branch lengths and linkages for tree #1
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 20 root 0 0 0
+ 19 20 0 0 0
+ 17 19 2 2 2
+ 16 17 3 3 3
+ 15 16 3 3 3
+H002 (1) 15 0 0 0
+ 14 15 1 1 1
+H008 (4) 14 1 1 1
+H014 (5) 14 1 1 1
+H009 (11) 15 1 1 1
+H006 (12) 15 1 1 1
+H007 (3) 16 1 1 1
+H012 (10) 16 1 1 1
+H011 (13) 16 1 1 1
+H013 (6) 17 0 0 0
+H001 (7) 19 2 2 2
+ 18 19 1 1 1
+H003 (8) 18 1 1 1
+H005 (9) 18 1 1 1
+H010 (2) 20 1 1 1
+-------------------------------------------------------------------------
+Sum 22
+
+Tree length = 22
+Consistency index (CI) = 0.5909
+Homoplasy index (HI) = 0.4091
+CI excluding uninformative characters = 0.5500
+HI excluding uninformative characters = 0.4500
+Retention index (RI) = 0.7805
+Rescaled consistency index (RC) = 0.4612
+
+ /--------------------- H002
+ |
+ | /---------- H008
+ +---------14
+ /--------15 \---------- H014
+ | |
+ | +--------------------- H009
+ | |
+ | \--------------------- H006
+ /---------16
+ | +------------------------------- H007
+ | |
+ | +------------------------------- H012
+ /--------17 |
+ | | \------------------------------- H011
+ | |
+ | \------------------------------------------ H013
+ /---------19
+ | +---------------------------------------------------- H001
+ | |
+ | | /---------- H003
+---------20 \----------------------------------------18
+ | \---------- H005
+ |
+ \--------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_19 --> node_17 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_17 --> node_16 8 1 1.000 2 ==> 1
+ 9 1 0.500 2 ==> 1
+ 10 1 0.500 2 ==> 1
+ node_16 --> node_15 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ 13 1 0.500 0 ==> 1
+ node_15 --> node_14 9 1 0.500 1 ==> 2
+ node_14 --> H008 11 1 0.333 2 ==> 1
+ node_14 --> H014 10 1 0.500 1 ==> 2
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_15 --> H006 11 1 0.333 2 ==> 1
+ node_16 --> H007 12 1 0.333 2 ==> 1
+ node_16 --> H012 11 1 0.333 2 ==> 1
+ node_16 --> H011 13 1 0.500 0 ==> 1
+ node_19 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_19 --> node_18 3 1 1.000 2 ==> 1
+ node_18 --> H003 4 1 1.000 2 ==> 1
+ node_18 --> H005 12 1 0.333 2 ==> 1
+ node_20 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 2:
+
+Branch lengths and linkages for tree #2
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 22 root 0 0 0
+ 21 22 0 0 0
+ 19 21 0 0 2
+ 18 19 2 2 2
+ 17 18 3 1 4
+ 16 17 2 1 2
+ 15 16 1 1 1
+H002 (1) 15 0 0 0
+ 14 15 2 2 3
+H007 (3) 14 2 1 2
+H012 (10) 14 2 1 2
+H011 (13) 14 0 0 1
+H009 (11) 15 1 1 1
+H006 (12) 15 1 1 1
+H008 (4) 16 1 1 1
+H014 (5) 17 0 0 0
+H013 (6) 18 0 0 3
+H001 (7) 19 2 0 2
+ 20 21 1 1 1
+H003 (8) 20 1 1 1
+H005 (9) 20 1 1 1
+H010 (2) 22 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+ /---------------- H002
+ |
+ | /-------- H007
+ | |
+ +------14-------- H012
+ /------15 |
+ | | \-------- H011
+ | |
+ | +---------------- H009
+ /------16 |
+ | | \---------------- H006
+ | |
+ /-------17 \------------------------ H008
+ | |
+ /------18 \-------------------------------- H014
+ | |
+ /------19 \----------------------------------------- H013
+ | |
+ | \------------------------------------------------- H001
+ /------21
+ | | /-------- H003
+ | \-----------------------------------------------20
+-------22 \-------- H005
+ |
+ \----------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_19 --> node_18 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_18 --> node_17 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_17 --> node_16 10 1 1.000 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_16 --> node_15 9 1 1.000 2 ==> 1
+ node_15 --> node_14 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_14 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_14 --> H012 11 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_15 --> H006 11 1 0.333 2 ==> 1
+ node_16 --> H008 11 1 0.333 2 ==> 1
+ node_19 --> H001 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ node_21 --> node_20 3 1 1.000 2 ==> 1
+ node_20 --> H003 4 1 1.000 2 ==> 1
+ node_20 --> H005 12 1 0.333 2 ==> 1
+ node_22 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 3:
+
+Branch lengths and linkages for tree #3
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 21 root 0 0 0
+ 20 21 0 0 0
+ 18 20 2 2 2
+ 17 18 3 3 3
+ 16 17 3 3 3
+H002 (1) 16 0 0 0
+ 15 16 0 0 1
+ 14 15 1 1 1
+H008 (4) 14 1 0 1
+H014 (5) 14 1 1 2
+H006 (12) 15 1 0 1
+H009 (11) 16 1 1 1
+H007 (3) 17 1 1 1
+H012 (10) 17 1 1 1
+H011 (13) 17 1 1 1
+H013 (6) 18 0 0 0
+H001 (7) 20 2 2 2
+ 19 20 1 1 1
+H003 (8) 19 1 1 1
+H005 (9) 19 1 1 1
+H010 (2) 21 1 1 1
+-------------------------------------------------------------------------
+Sum 22
+
+Tree length = 22
+Consistency index (CI) = 0.5909
+Homoplasy index (HI) = 0.4091
+CI excluding uninformative characters = 0.5500
+HI excluding uninformative characters = 0.4500
+Retention index (RI) = 0.7805
+Rescaled consistency index (RC) = 0.4612
+
+ /--------------------------- H002
+ |
+ | /--------- H008
+ | /-------14
+ /--------16 | \--------- H014
+ | +-------15
+ | | \------------------ H006
+ | |
+ | \--------------------------- H009
+ /-------17
+ | +------------------------------------- H007
+ | |
+ | +------------------------------------- H012
+ /-------18 |
+ | | \------------------------------------- H011
+ | |
+ | \---------------------------------------------- H013
+ /-------20
+ | +------------------------------------------------------- H001
+ | |
+ | | /--------- H003
+--------21 \--------------------------------------------19
+ | \--------- H005
+ |
+ \---------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_20 --> node_18 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_18 --> node_17 8 1 1.000 2 ==> 1
+ 9 1 0.500 2 ==> 1
+ 10 1 0.500 2 ==> 1
+ node_17 --> node_16 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ 13 1 0.500 0 ==> 1
+ node_15 --> node_14 9 1 0.500 1 ==> 2
+ node_14 --> H008 11 1 0.333 2 --> 1
+ node_14 --> H014 10 1 0.500 1 ==> 2
+ node_15 --> H006 11 1 0.333 2 --> 1
+ node_16 --> H009 12 1 0.333 2 ==> 1
+ node_17 --> H007 12 1 0.333 2 ==> 1
+ node_17 --> H012 11 1 0.333 2 ==> 1
+ node_17 --> H011 13 1 0.500 0 ==> 1
+ node_20 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_20 --> node_19 3 1 1.000 2 ==> 1
+ node_19 --> H003 4 1 1.000 2 ==> 1
+ node_19 --> H005 12 1 0.333 2 ==> 1
+ node_21 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 4:
+
+Branch lengths and linkages for tree #4
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 22 root 0 0 0
+ 21 22 0 0 0
+ 19 21 2 2 2
+ 18 19 3 3 3
+ 17 18 0 0 1
+ 16 17 3 3 3
+ 14 16 0 0 1
+H002 (1) 14 0 0 0
+H009 (11) 14 1 1 1
+ 15 16 1 1 1
+H008 (4) 15 1 0 1
+H014 (5) 15 1 1 2
+H006 (12) 16 1 0 1
+H012 (10) 17 1 0 1
+H007 (3) 18 1 1 1
+H011 (13) 18 1 1 1
+H013 (6) 19 0 0 0
+H001 (7) 21 2 2 2
+ 20 21 1 1 1
+H003 (8) 20 1 1 1
+H005 (9) 20 1 1 1
+H010 (2) 22 1 1 1
+-------------------------------------------------------------------------
+Sum 22
+
+Tree length = 22
+Consistency index (CI) = 0.5909
+Homoplasy index (HI) = 0.4091
+CI excluding uninformative characters = 0.5500
+HI excluding uninformative characters = 0.4500
+Retention index (RI) = 0.7805
+Rescaled consistency index (RC) = 0.4612
+
+ /--------- H002
+ /-------14
+ | \--------- H009
+ |
+ | /--------- H008
+ /-------16-------15
+ | | \--------- H014
+ | |
+ /--------17 \------------------ H006
+ | |
+ | \--------------------------- H012
+ /-------18
+ | +------------------------------------- H007
+ | |
+ /-------19 \------------------------------------- H011
+ | |
+ | \---------------------------------------------- H013
+ |
+ /-------21------------------------------------------------------- H001
+ | |
+ | | /--------- H003
+--------22 \--------------------------------------------20
+ | \--------- H005
+ |
+ \---------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_19 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_19 --> node_18 8 1 1.000 2 ==> 1
+ 9 1 0.500 2 ==> 1
+ 10 1 0.500 2 ==> 1
+ node_17 --> node_16 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ 13 1 0.500 0 ==> 1
+ node_14 --> H009 12 1 0.333 2 ==> 1
+ node_16 --> node_15 9 1 0.500 1 ==> 2
+ node_15 --> H008 11 1 0.333 2 --> 1
+ node_15 --> H014 10 1 0.500 1 ==> 2
+ node_16 --> H006 11 1 0.333 2 --> 1
+ node_17 --> H012 11 1 0.333 2 --> 1
+ node_18 --> H007 12 1 0.333 2 ==> 1
+ node_18 --> H011 13 1 0.500 0 ==> 1
+ node_21 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_21 --> node_20 3 1 1.000 2 ==> 1
+ node_20 --> H003 4 1 1.000 2 ==> 1
+ node_20 --> H005 12 1 0.333 2 ==> 1
+ node_22 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 5:
+
+Branch lengths and linkages for tree #5
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 22 23 0 0 0
+ 20 22 2 2 2
+ 19 20 3 3 3
+ 18 19 0 0 1
+ 17 18 3 3 3
+ 14 17 0 0 1
+H002 (1) 14 0 0 0
+H009 (11) 14 1 1 1
+ 16 17 0 0 1
+ 15 16 1 1 1
+H008 (4) 15 1 0 1
+H014 (5) 15 1 1 2
+H006 (12) 16 1 0 1
+H012 (10) 18 1 0 1
+H007 (3) 19 1 1 1
+H011 (13) 19 1 1 1
+H013 (6) 20 0 0 0
+H001 (7) 22 2 2 2
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (9) 21 1 1 1
+H010 (2) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 22
+
+Tree length = 22
+Consistency index (CI) = 0.5909
+Homoplasy index (HI) = 0.4091
+CI excluding uninformative characters = 0.5500
+HI excluding uninformative characters = 0.4500
+Retention index (RI) = 0.7805
+Rescaled consistency index (RC) = 0.4612
+
+ /-------- H002
+ /--------------14
+ | \-------- H009
+ |
+ /------17 /-------- H008
+ | | /------15
+ | | | \-------- H014
+ /-------18 \------16
+ | | \---------------- H006
+ | |
+ | \-------------------------------- H012
+ /------19
+ | +----------------------------------------- H007
+ | |
+ /------20 \----------------------------------------- H011
+ | |
+ | \------------------------------------------------- H013
+ |
+ /------22--------------------------------------------------------- H001
+ | |
+ | | /-------- H003
+-------23 \-----------------------------------------------21
+ | \-------- H005
+ |
+ \----------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_20 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_20 --> node_19 8 1 1.000 2 ==> 1
+ 9 1 0.500 2 ==> 1
+ 10 1 0.500 2 ==> 1
+ node_18 --> node_17 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ 13 1 0.500 0 ==> 1
+ node_14 --> H009 12 1 0.333 2 ==> 1
+ node_16 --> node_15 9 1 0.500 1 ==> 2
+ node_15 --> H008 11 1 0.333 2 --> 1
+ node_15 --> H014 10 1 0.500 1 ==> 2
+ node_16 --> H006 11 1 0.333 2 --> 1
+ node_18 --> H012 11 1 0.333 2 --> 1
+ node_19 --> H007 12 1 0.333 2 ==> 1
+ node_19 --> H011 13 1 0.500 0 ==> 1
+ node_22 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 6:
+
+Branch lengths and linkages for tree #6
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 22 root 0 0 0
+ 21 22 0 0 0
+ 19 21 2 2 2
+ 18 19 2 2 3
+ 16 18 3 3 3
+ 14 16 1 0 1
+H002 (1) 14 0 0 0
+H009 (11) 14 1 1 1
+H006 (12) 14 1 1 1
+ 15 16 0 0 1
+H008 (4) 15 1 1 1
+H014 (5) 15 1 1 1
+ 17 18 1 0 1
+H007 (3) 17 1 1 1
+H012 (10) 17 1 1 1
+H011 (13) 17 1 1 1
+H013 (6) 19 0 0 0
+H001 (7) 21 2 2 2
+ 20 21 1 1 1
+H003 (8) 20 1 1 1
+H005 (9) 20 1 1 1
+H010 (2) 22 1 1 1
+-------------------------------------------------------------------------
+Sum 22
+
+Tree length = 22
+Consistency index (CI) = 0.5909
+Homoplasy index (HI) = 0.4091
+CI excluding uninformative characters = 0.5500
+HI excluding uninformative characters = 0.4500
+Retention index (RI) = 0.7805
+Rescaled consistency index (RC) = 0.4612
+
+ /---------- H002
+ |
+ /---------14---------- H009
+ | |
+ | \---------- H006
+ /--------16
+ | | /---------- H008
+ | \---------15
+ | \---------- H014
+ /---------18
+ | | /---------- H007
+ | | |
+ | \-------------------17---------- H012
+ /--------19 |
+ | | \---------- H011
+ | |
+ | \------------------------------------------ H013
+ /---------21
+ | +---------------------------------------------------- H001
+ | |
+ | | /---------- H003
+---------22 \----------------------------------------20
+ | \---------- H005
+ |
+ \--------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_19 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_19 --> node_18 8 1 1.000 2 ==> 1
+ 10 1 0.500 2 ==> 1
+ node_18 --> node_16 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ 13 1 0.500 0 ==> 1
+ node_16 --> node_14 9 1 0.500 2 --> 1
+ node_14 --> H009 12 1 0.333 2 ==> 1
+ node_14 --> H006 11 1 0.333 2 ==> 1
+ node_15 --> H008 11 1 0.333 2 ==> 1
+ node_15 --> H014 10 1 0.500 1 ==> 2
+ node_18 --> node_17 9 1 0.500 2 --> 1
+ node_17 --> H007 12 1 0.333 2 ==> 1
+ node_17 --> H012 11 1 0.333 2 ==> 1
+ node_17 --> H011 13 1 0.500 0 ==> 1
+ node_21 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_21 --> node_20 3 1 1.000 2 ==> 1
+ node_20 --> H003 4 1 1.000 2 ==> 1
+ node_20 --> H005 12 1 0.333 2 ==> 1
+ node_22 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 7:
+
+Branch lengths and linkages for tree #7
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 21 root 0 0 0
+ 20 21 0 0 0
+ 18 20 2 2 2
+ 17 18 2 2 2
+ 15 17 3 3 3
+ 14 15 1 1 1
+H002 (1) 14 0 0 0
+H009 (11) 14 1 1 1
+H006 (12) 14 1 1 1
+H008 (4) 15 1 1 1
+H014 (5) 15 1 1 1
+ 16 17 1 1 1
+H007 (3) 16 1 1 1
+H012 (10) 16 1 1 1
+H011 (13) 16 1 1 1
+H013 (6) 18 0 0 0
+H001 (7) 20 2 2 2
+ 19 20 1 1 1
+H003 (8) 19 1 1 1
+H005 (9) 19 1 1 1
+H010 (2) 21 1 1 1
+-------------------------------------------------------------------------
+Sum 22
+
+Tree length = 22
+Consistency index (CI) = 0.5909
+Homoplasy index (HI) = 0.4091
+CI excluding uninformative characters = 0.5500
+HI excluding uninformative characters = 0.4500
+Retention index (RI) = 0.7805
+Rescaled consistency index (RC) = 0.4612
+
+ /---------- H002
+ |
+ /---------14---------- H009
+ | |
+ | \---------- H006
+ /--------15
+ | +--------------------- H008
+ | |
+ | \--------------------- H014
+ /---------17
+ | | /---------- H007
+ | | |
+ | \-------------------16---------- H012
+ /--------18 |
+ | | \---------- H011
+ | |
+ | \------------------------------------------ H013
+ /---------20
+ | +---------------------------------------------------- H001
+ | |
+ | | /---------- H003
+---------21 \----------------------------------------19
+ | \---------- H005
+ |
+ \--------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_20 --> node_18 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_18 --> node_17 8 1 1.000 2 ==> 1
+ 10 1 0.500 2 ==> 1
+ node_17 --> node_15 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ 13 1 0.500 0 ==> 1
+ node_15 --> node_14 9 1 0.500 2 ==> 1
+ node_14 --> H009 12 1 0.333 2 ==> 1
+ node_14 --> H006 11 1 0.333 2 ==> 1
+ node_15 --> H008 11 1 0.333 2 ==> 1
+ node_15 --> H014 10 1 0.500 1 ==> 2
+ node_17 --> node_16 9 1 0.500 2 ==> 1
+ node_16 --> H007 12 1 0.333 2 ==> 1
+ node_16 --> H012 11 1 0.333 2 ==> 1
+ node_16 --> H011 13 1 0.500 0 ==> 1
+ node_20 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_20 --> node_19 3 1 1.000 2 ==> 1
+ node_19 --> H003 4 1 1.000 2 ==> 1
+ node_19 --> H005 12 1 0.333 2 ==> 1
+ node_21 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 8:
+
+Branch lengths and linkages for tree #8
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 22 23 0 0 0
+ 20 22 2 2 2
+ 19 20 1 1 2
+ 17 19 2 2 3
+ 16 17 2 0 3
+ 15 16 1 1 1
+ 14 15 0 0 1
+H002 (1) 14 0 0 0
+H009 (11) 14 1 1 1
+H006 (12) 15 1 0 1
+H008 (4) 16 1 0 1
+H014 (5) 17 0 0 1
+ 18 19 2 1 2
+H007 (3) 18 1 1 1
+H012 (10) 18 1 1 1
+H011 (13) 18 1 1 1
+H013 (6) 20 0 0 0
+H001 (7) 22 2 2 2
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (9) 21 1 1 1
+H010 (2) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 22
+
+Tree length = 22
+Consistency index (CI) = 0.5909
+Homoplasy index (HI) = 0.4091
+CI excluding uninformative characters = 0.5500
+HI excluding uninformative characters = 0.4500
+Retention index (RI) = 0.7805
+Rescaled consistency index (RC) = 0.4612
+
+ /-------- H002
+ /------14
+ | \-------- H009
+ /------15
+ | \---------------- H006
+ /------16
+ | \------------------------ H008
+ /-------17
+ | \-------------------------------- H014
+ |
+ /------19 /-------- H007
+ | | |
+ | \-------------------------------18-------- H012
+ /------20 |
+ | | \-------- H011
+ | |
+ | \------------------------------------------------- H013
+ /------22
+ | +--------------------------------------------------------- H001
+ | |
+ | | /-------- H003
+-------23 \-----------------------------------------------21
+ | \-------- H005
+ |
+ \----------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_20 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_20 --> node_19 8 1 1.000 2 ==> 1
+ node_19 --> node_17 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_17 --> node_16 10 1 0.500 2 --> 1
+ 13 1 0.500 0 --> 1
+ node_16 --> node_15 9 1 0.500 2 ==> 1
+ node_14 --> H009 12 1 0.333 2 ==> 1
+ node_15 --> H006 11 1 0.333 2 --> 1
+ node_16 --> H008 11 1 0.333 2 --> 1
+ node_19 --> node_18 9 1 0.500 2 ==> 1
+ 10 1 0.500 2 --> 1
+ node_18 --> H007 12 1 0.333 2 ==> 1
+ node_18 --> H012 11 1 0.333 2 ==> 1
+ node_18 --> H011 13 1 0.500 0 ==> 1
+ node_22 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 9:
+
+Branch lengths and linkages for tree #9
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 22 23 0 0 0
+ 20 22 2 2 2
+ 19 20 3 3 3
+ 18 19 0 0 1
+ 17 18 3 3 3
+ 16 17 0 0 1
+H002 (1) 16 0 0 0
+ 15 16 0 0 1
+ 14 15 1 1 1
+H008 (4) 14 1 0 1
+H014 (5) 14 1 1 2
+H006 (12) 15 1 0 1
+H009 (11) 17 1 0 1
+H007 (3) 18 1 0 1
+H012 (10) 19 1 1 1
+H011 (13) 19 1 1 1
+H013 (6) 20 0 0 0
+H001 (7) 22 2 2 2
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (9) 21 1 1 1
+H010 (2) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 22
+
+Tree length = 22
+Consistency index (CI) = 0.5909
+Homoplasy index (HI) = 0.4091
+CI excluding uninformative characters = 0.5500
+HI excluding uninformative characters = 0.4500
+Retention index (RI) = 0.7805
+Rescaled consistency index (RC) = 0.4612
+
+ /---------------------- H002
+ |
+ | /------- H008
+ /-----16 /------14
+ | | | \------- H014
+ | \-----15
+ /-----17 \--------------- H006
+ | |
+ /------18 \----------------------------- H009
+ | |
+ | \------------------------------------ H007
+ /-----19
+ | +-------------------------------------------- H012
+ | |
+ /-----20 \-------------------------------------------- H011
+ | |
+ | \--------------------------------------------------- H013
+ |
+ /------22---------------------------------------------------------- H001
+ | |
+ | | /------- H003
+------23 \-------------------------------------------------21
+ | \------- H005
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_20 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_20 --> node_19 8 1 1.000 2 ==> 1
+ 9 1 0.500 2 ==> 1
+ 10 1 0.500 2 ==> 1
+ node_18 --> node_17 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ 13 1 0.500 0 ==> 1
+ node_15 --> node_14 9 1 0.500 1 ==> 2
+ node_14 --> H008 11 1 0.333 2 --> 1
+ node_14 --> H014 10 1 0.500 1 ==> 2
+ node_15 --> H006 11 1 0.333 2 --> 1
+ node_17 --> H009 12 1 0.333 2 --> 1
+ node_18 --> H007 12 1 0.333 2 --> 1
+ node_19 --> H012 11 1 0.333 2 ==> 1
+ node_19 --> H011 13 1 0.500 0 ==> 1
+ node_22 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 10:
+
+Branch lengths and linkages for tree #10
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 21 root 0 0 0
+ 20 21 0 0 0
+ 18 20 2 2 2
+ 17 18 3 3 3
+ 16 17 3 3 3
+H002 (1) 16 0 0 0
+ 15 16 0 0 1
+ 14 15 1 1 1
+H008 (4) 14 1 0 1
+H006 (12) 14 0 0 1
+H014 (5) 15 2 1 2
+H009 (11) 16 1 1 1
+H007 (3) 17 1 1 1
+H012 (10) 17 1 1 1
+H011 (13) 17 1 1 1
+H013 (6) 18 0 0 0
+H001 (7) 20 2 2 2
+ 19 20 1 1 1
+H003 (8) 19 1 1 1
+H005 (9) 19 1 1 1
+H010 (2) 21 1 1 1
+-------------------------------------------------------------------------
+Sum 22
+
+Tree length = 22
+Consistency index (CI) = 0.5909
+Homoplasy index (HI) = 0.4091
+CI excluding uninformative characters = 0.5500
+HI excluding uninformative characters = 0.4500
+Retention index (RI) = 0.7805
+Rescaled consistency index (RC) = 0.4612
+
+ /--------------------------- H002
+ |
+ | /--------- H008
+ | /-------14
+ /--------16 | \--------- H006
+ | +-------15
+ | | \------------------ H014
+ | |
+ | \--------------------------- H009
+ /-------17
+ | +------------------------------------- H007
+ | |
+ | +------------------------------------- H012
+ /-------18 |
+ | | \------------------------------------- H011
+ | |
+ | \---------------------------------------------- H013
+ /-------20
+ | +------------------------------------------------------- H001
+ | |
+ | | /--------- H003
+--------21 \--------------------------------------------19
+ | \--------- H005
+ |
+ \---------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_20 --> node_18 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_18 --> node_17 8 1 1.000 2 ==> 1
+ 9 1 0.333 2 ==> 1
+ 10 1 0.500 2 ==> 1
+ node_17 --> node_16 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ 13 1 0.500 0 ==> 1
+ node_15 --> node_14 11 1 0.500 2 ==> 1
+ node_14 --> H008 9 1 0.333 1 --> 2
+ node_15 --> H014 9 1 0.333 1 --> 2
+ 10 1 0.500 1 ==> 2
+ node_16 --> H009 12 1 0.333 2 ==> 1
+ node_17 --> H007 12 1 0.333 2 ==> 1
+ node_17 --> H012 11 1 0.500 2 ==> 1
+ node_17 --> H011 13 1 0.500 0 ==> 1
+ node_20 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_20 --> node_19 3 1 1.000 2 ==> 1
+ node_19 --> H003 4 1 1.000 2 ==> 1
+ node_19 --> H005 12 1 0.333 2 ==> 1
+ node_21 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 11:
+
+Branch lengths and linkages for tree #11
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 22 23 0 0 0
+ 20 22 2 2 2
+ 19 20 3 3 3
+ 18 19 0 0 1
+ 17 18 3 3 3
+ 16 17 0 0 1
+ 14 16 0 0 1
+H002 (1) 14 0 0 0
+H009 (11) 14 1 1 1
+ 15 16 1 1 1
+H008 (4) 15 1 0 1
+H014 (5) 15 1 1 2
+H006 (12) 17 1 0 1
+H012 (10) 18 1 0 1
+H007 (3) 19 1 1 1
+H011 (13) 19 1 1 1
+H013 (6) 20 0 0 0
+H001 (7) 22 2 2 2
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (9) 21 1 1 1
+H010 (2) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 22
+
+Tree length = 22
+Consistency index (CI) = 0.5909
+Homoplasy index (HI) = 0.4091
+CI excluding uninformative characters = 0.5500
+HI excluding uninformative characters = 0.4500
+Retention index (RI) = 0.7805
+Rescaled consistency index (RC) = 0.4612
+
+ /-------- H002
+ /------14
+ | \-------- H009
+ /------16
+ | | /-------- H008
+ | \------15
+ /------17 \-------- H014
+ | |
+ /-------18 \------------------------ H006
+ | |
+ | \-------------------------------- H012
+ /------19
+ | +----------------------------------------- H007
+ | |
+ /------20 \----------------------------------------- H011
+ | |
+ | \------------------------------------------------- H013
+ |
+ /------22--------------------------------------------------------- H001
+ | |
+ | | /-------- H003
+-------23 \-----------------------------------------------21
+ | \-------- H005
+ |
+ \----------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_20 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_20 --> node_19 8 1 1.000 2 ==> 1
+ 9 1 0.500 2 ==> 1
+ 10 1 0.500 2 ==> 1
+ node_18 --> node_17 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ 13 1 0.500 0 ==> 1
+ node_14 --> H009 12 1 0.333 2 ==> 1
+ node_16 --> node_15 9 1 0.500 1 ==> 2
+ node_15 --> H008 11 1 0.333 2 --> 1
+ node_15 --> H014 10 1 0.500 1 ==> 2
+ node_17 --> H006 11 1 0.333 2 --> 1
+ node_18 --> H012 11 1 0.333 2 --> 1
+ node_19 --> H007 12 1 0.333 2 ==> 1
+ node_19 --> H011 13 1 0.500 0 ==> 1
+ node_22 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 12:
+
+Branch lengths and linkages for tree #12
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 20 root 0 0 0
+ 19 20 0 0 0
+ 17 19 2 2 2
+ 16 17 3 3 3
+ 15 16 3 3 3
+H002 (1) 15 0 0 0
+ 14 15 1 1 1
+H008 (4) 14 1 1 1
+H006 (12) 14 0 0 0
+H014 (5) 15 2 2 2
+H009 (11) 15 1 1 1
+H007 (3) 16 1 1 1
+H012 (10) 16 1 1 1
+H011 (13) 16 1 1 1
+H013 (6) 17 0 0 0
+H001 (7) 19 2 2 2
+ 18 19 1 1 1
+H003 (8) 18 1 1 1
+H005 (9) 18 1 1 1
+H010 (2) 20 1 1 1
+-------------------------------------------------------------------------
+Sum 22
+
+Tree length = 22
+Consistency index (CI) = 0.5909
+Homoplasy index (HI) = 0.4091
+CI excluding uninformative characters = 0.5500
+HI excluding uninformative characters = 0.4500
+Retention index (RI) = 0.7805
+Rescaled consistency index (RC) = 0.4612
+
+ /--------------------- H002
+ |
+ | /---------- H008
+ +---------14
+ /--------15 \---------- H006
+ | |
+ | +--------------------- H014
+ | |
+ | \--------------------- H009
+ /---------16
+ | +------------------------------- H007
+ | |
+ | +------------------------------- H012
+ /--------17 |
+ | | \------------------------------- H011
+ | |
+ | \------------------------------------------ H013
+ /---------19
+ | +---------------------------------------------------- H001
+ | |
+ | | /---------- H003
+---------20 \----------------------------------------18
+ | \---------- H005
+ |
+ \--------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_19 --> node_17 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_17 --> node_16 8 1 1.000 2 ==> 1
+ 9 1 0.333 2 ==> 1
+ 10 1 0.500 2 ==> 1
+ node_16 --> node_15 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ 13 1 0.500 0 ==> 1
+ node_15 --> node_14 11 1 0.500 2 ==> 1
+ node_14 --> H008 9 1 0.333 1 ==> 2
+ node_15 --> H014 9 1 0.333 1 ==> 2
+ 10 1 0.500 1 ==> 2
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_16 --> H007 12 1 0.333 2 ==> 1
+ node_16 --> H012 11 1 0.500 2 ==> 1
+ node_16 --> H011 13 1 0.500 0 ==> 1
+ node_19 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_19 --> node_18 3 1 1.000 2 ==> 1
+ node_18 --> H003 4 1 1.000 2 ==> 1
+ node_18 --> H005 12 1 0.333 2 ==> 1
+ node_20 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 13:
+
+Branch lengths and linkages for tree #13
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 22 root 0 0 0
+ 21 22 0 0 0
+ 19 21 0 0 2
+ 18 19 2 2 3
+ 17 18 3 1 4
+ 16 17 2 1 2
+ 15 16 1 1 1
+H002 (1) 15 0 0 0
+ 14 15 2 2 3
+H007 (3) 14 2 1 2
+H012 (10) 14 2 1 2
+H011 (13) 14 0 0 1
+H009 (11) 15 1 1 1
+H006 (12) 15 1 1 1
+H008 (4) 16 1 1 1
+H014 (5) 17 0 0 0
+H001 (7) 18 0 0 2
+H013 (6) 19 2 0 3
+ 20 21 1 1 1
+H003 (8) 20 1 1 1
+H005 (9) 20 1 1 1
+H010 (2) 22 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+ /---------------- H002
+ |
+ | /-------- H007
+ | |
+ +------14-------- H012
+ /------15 |
+ | | \-------- H011
+ | |
+ | +---------------- H009
+ /------16 |
+ | | \---------------- H006
+ | |
+ /-------17 \------------------------ H008
+ | |
+ /------18 \-------------------------------- H014
+ | |
+ /------19 \----------------------------------------- H001
+ | |
+ | \------------------------------------------------- H013
+ /------21
+ | | /-------- H003
+ | \-----------------------------------------------20
+-------22 \-------- H005
+ |
+ \----------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_19 --> node_18 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_18 --> node_17 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_17 --> node_16 10 1 1.000 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_16 --> node_15 9 1 1.000 2 ==> 1
+ node_15 --> node_14 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_14 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_14 --> H012 11 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_15 --> H006 11 1 0.333 2 ==> 1
+ node_16 --> H008 11 1 0.333 2 ==> 1
+ node_19 --> H013 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ node_21 --> node_20 3 1 1.000 2 ==> 1
+ node_20 --> H003 4 1 1.000 2 ==> 1
+ node_20 --> H005 12 1 0.333 2 ==> 1
+ node_22 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 14:
+
+Branch lengths and linkages for tree #14
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 22 23 0 0 0
+ 20 22 0 0 2
+ 19 20 2 2 2
+ 18 19 3 1 4
+ 17 18 2 1 3
+ 16 17 1 1 1
+ 15 16 0 0 1
+H002 (1) 15 0 0 0
+ 14 15 2 2 3
+H007 (3) 14 2 1 2
+H012 (10) 14 2 1 2
+H011 (13) 14 0 0 1
+H009 (11) 15 1 1 1
+H006 (12) 16 1 0 1
+H008 (4) 17 1 0 1
+H014 (5) 18 0 0 0
+H013 (6) 19 0 0 3
+H001 (7) 20 2 0 2
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (9) 21 1 1 1
+H010 (2) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+ /--------------- H002
+ |
+ | /------- H007
+ | |
+ /-----15------14------- H012
+ | | |
+ | | \------- H011
+ /-----16 |
+ | | \--------------- H009
+ | |
+ /-----17 \---------------------- H006
+ | |
+ /------18 \----------------------------- H008
+ | |
+ /-----19 \------------------------------------ H014
+ | |
+ /-----20 \-------------------------------------------- H013
+ | |
+ | \--------------------------------------------------- H001
+ /------22
+ | | /------- H003
+ | \-------------------------------------------------21
+------23 \------- H005
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_20 --> node_19 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_19 --> node_18 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_18 --> node_17 10 1 1.000 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_17 --> node_16 9 1 1.000 2 ==> 1
+ node_15 --> node_14 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_14 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_14 --> H012 11 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_16 --> H006 11 1 0.333 2 --> 1
+ node_17 --> H008 11 1 0.333 2 --> 1
+ node_20 --> H001 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 15:
+
+Branch lengths and linkages for tree #15
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 22 root 0 0 0
+ 21 22 0 0 0
+ 19 21 0 0 2
+ 18 19 2 2 2
+ 17 18 3 1 4
+ 16 17 2 2 3
+H002 (1) 16 0 0 0
+ 14 16 2 2 3
+H007 (3) 14 1 1 2
+H012 (10) 14 1 1 2
+H011 (13) 14 1 0 1
+ 15 16 2 1 2
+H008 (4) 15 1 1 1
+H006 (12) 15 0 0 0
+H009 (11) 16 2 1 2
+H014 (5) 17 0 0 0
+H013 (6) 18 0 0 3
+H001 (7) 19 2 0 2
+ 20 21 1 1 1
+H003 (8) 20 1 1 1
+H005 (9) 20 1 1 1
+H010 (2) 22 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+ /------------------ H002
+ |
+ | /--------- H007
+ | |
+ +-------14--------- H012
+ | |
+ /-------16 \--------- H011
+ | |
+ | | /--------- H008
+ | +-------15
+ /--------17 | \--------- H006
+ | | |
+ | | \------------------ H009
+ /-------18 |
+ | | \--------------------------- H014
+ | |
+ /-------19 \------------------------------------- H013
+ | |
+ | \---------------------------------------------- H001
+ /-------21
+ | | /--------- H003
+ | \--------------------------------------------20
+--------22 \--------- H005
+ |
+ \---------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_19 --> node_18 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_18 --> node_17 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_17 --> node_16 9 1 0.500 2 ==> 1
+ 10 1 1.000 2 ==> 1
+ node_16 --> node_14 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_14 --> H007 12 1 0.333 2 ==> 1
+ node_14 --> H012 11 1 0.500 2 ==> 1
+ node_14 --> H011 13 1 0.333 0 --> 1
+ node_16 --> node_15 11 1 0.500 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_15 --> H008 9 1 0.500 1 ==> 2
+ node_16 --> H009 12 1 0.333 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_19 --> H001 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ node_21 --> node_20 3 1 1.000 2 ==> 1
+ node_20 --> H003 4 1 1.000 2 ==> 1
+ node_20 --> H005 12 1 0.333 2 ==> 1
+ node_22 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 16:
+
+Branch lengths and linkages for tree #16
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 22 23 0 0 0
+ 20 22 0 0 2
+ 19 20 2 2 2
+ 18 19 1 1 3
+ 17 18 2 2 2
+ 15 17 3 1 3
+H002 (1) 15 0 0 0
+ 14 15 1 1 1
+H008 (4) 14 1 1 1
+H006 (12) 14 0 0 0
+H009 (11) 15 1 1 1
+ 16 17 0 0 2
+H007 (3) 16 1 1 1
+H012 (10) 16 1 1 1
+H011 (13) 16 1 1 1
+H014 (5) 18 2 0 2
+H013 (6) 19 0 0 2
+H001 (7) 20 2 0 2
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (9) 21 1 1 1
+H010 (2) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 22
+
+Tree length = 22
+Consistency index (CI) = 0.5909
+Homoplasy index (HI) = 0.4091
+CI excluding uninformative characters = 0.5500
+HI excluding uninformative characters = 0.4500
+Retention index (RI) = 0.7805
+Rescaled consistency index (RC) = 0.4612
+
+ /---------------- H002
+ |
+ | /-------- H008
+ /------15------14
+ | | \-------- H006
+ | |
+ | \---------------- H009
+ /------17
+ | | /-------- H007
+ | | |
+ | \--------------16-------- H012
+ /-------18 |
+ | | \-------- H011
+ | |
+ /------19 \-------------------------------- H014
+ | |
+ /------20 \----------------------------------------- H013
+ | |
+ | \------------------------------------------------- H001
+ /------22
+ | | /-------- H003
+ | \-----------------------------------------------21
+-------23 \-------- H005
+ |
+ \----------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_20 --> node_19 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_19 --> node_18 8 1 1.000 2 ==> 1
+ node_18 --> node_17 9 1 0.500 2 ==> 1
+ 10 1 1.000 2 ==> 1
+ node_17 --> node_15 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ 13 1 0.500 0 ==> 1
+ node_15 --> node_14 11 1 0.500 2 ==> 1
+ node_14 --> H008 9 1 0.500 1 ==> 2
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_16 --> H007 12 1 0.333 2 ==> 1
+ node_16 --> H012 11 1 0.500 2 ==> 1
+ node_16 --> H011 13 1 0.500 0 ==> 1
+ node_18 --> H014 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ node_20 --> H001 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 17:
+
+Branch lengths and linkages for tree #17
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 21 root 0 0 0
+ 20 21 0 0 0
+ 18 20 2 2 2
+ 17 18 1 1 1
+ 16 17 2 2 2
+ 15 16 3 3 3
+H002 (1) 15 0 0 0
+ 14 15 1 1 1
+H008 (4) 14 1 1 1
+H006 (12) 14 0 0 0
+H009 (11) 15 1 1 1
+H007 (3) 16 1 1 1
+H012 (10) 16 1 1 1
+H011 (13) 16 1 1 1
+H014 (5) 17 2 2 2
+H013 (6) 18 0 0 0
+H001 (7) 20 2 2 2
+ 19 20 1 1 1
+H003 (8) 19 1 1 1
+H005 (9) 19 1 1 1
+H010 (2) 21 1 1 1
+-------------------------------------------------------------------------
+Sum 22
+
+Tree length = 22
+Consistency index (CI) = 0.5909
+Homoplasy index (HI) = 0.4091
+CI excluding uninformative characters = 0.5500
+HI excluding uninformative characters = 0.4500
+Retention index (RI) = 0.7805
+Rescaled consistency index (RC) = 0.4612
+
+ /------------------ H002
+ |
+ | /--------- H008
+ /-------15-------14
+ | | \--------- H006
+ | |
+ | \------------------ H009
+ |
+ /--------16--------------------------- H007
+ | |
+ | +--------------------------- H012
+ /-------17 |
+ | | \--------------------------- H011
+ | |
+ /-------18 \------------------------------------- H014
+ | |
+ | \---------------------------------------------- H013
+ |
+ /-------20------------------------------------------------------- H001
+ | |
+ | | /--------- H003
+--------21 \--------------------------------------------19
+ | \--------- H005
+ |
+ \---------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_20 --> node_18 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_18 --> node_17 8 1 1.000 2 ==> 1
+ node_17 --> node_16 9 1 0.500 2 ==> 1
+ 10 1 1.000 2 ==> 1
+ node_16 --> node_15 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ 13 1 0.500 0 ==> 1
+ node_15 --> node_14 11 1 0.500 2 ==> 1
+ node_14 --> H008 9 1 0.500 1 ==> 2
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_16 --> H007 12 1 0.333 2 ==> 1
+ node_16 --> H012 11 1 0.500 2 ==> 1
+ node_16 --> H011 13 1 0.500 0 ==> 1
+ node_17 --> H014 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_20 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_20 --> node_19 3 1 1.000 2 ==> 1
+ node_19 --> H003 4 1 1.000 2 ==> 1
+ node_19 --> H005 12 1 0.333 2 ==> 1
+ node_21 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 18:
+
+Branch lengths and linkages for tree #18
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 22 root 0 0 0
+ 21 22 0 0 0
+ 19 21 2 2 3
+ 18 19 3 3 4
+ 17 18 2 1 3
+ 16 17 1 1 1
+ 15 16 0 0 1
+H002 (1) 15 0 0 0
+ 14 15 2 2 3
+H007 (3) 14 2 1 2
+H012 (10) 14 2 1 2
+H011 (13) 14 0 0 1
+H009 (11) 15 1 1 1
+H006 (12) 16 1 0 1
+H008 (4) 17 1 0 1
+H014 (5) 18 0 0 0
+H001 (7) 19 0 0 0
+H013 (6) 21 2 2 3
+ 20 21 1 1 1
+H003 (8) 20 1 1 1
+H005 (9) 20 1 1 1
+H010 (2) 22 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+ /---------------- H002
+ |
+ | /-------- H007
+ | |
+ /------15------14-------- H012
+ | | |
+ | | \-------- H011
+ /------16 |
+ | | \---------------- H009
+ | |
+ /-------17 \------------------------ H006
+ | |
+ /------18 \-------------------------------- H008
+ | |
+ /------19 \----------------------------------------- H014
+ | |
+ | \------------------------------------------------- H001
+ |
+ /------21--------------------------------------------------------- H013
+ | |
+ | | /-------- H003
+-------22 \-----------------------------------------------20
+ | \-------- H005
+ |
+ \----------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_19 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_19 --> node_18 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_18 --> node_17 10 1 1.000 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_17 --> node_16 9 1 1.000 2 ==> 1
+ node_15 --> node_14 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_14 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_14 --> H012 11 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_16 --> H006 11 1 0.333 2 --> 1
+ node_17 --> H008 11 1 0.333 2 --> 1
+ node_21 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ node_21 --> node_20 3 1 1.000 2 ==> 1
+ node_20 --> H003 4 1 1.000 2 ==> 1
+ node_20 --> H005 12 1 0.333 2 ==> 1
+ node_22 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 19:
+
+Branch lengths and linkages for tree #19
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 22 23 0 0 0
+ 20 22 0 0 2
+ 19 20 2 2 2
+ 18 19 3 1 4
+ 17 18 1 1 3
+ 15 17 1 0 1
+H002 (1) 15 0 0 0
+ 14 15 2 2 3
+H007 (3) 14 1 1 2
+H012 (10) 14 1 1 2
+H011 (13) 14 1 0 1
+H009 (11) 15 2 1 2
+ 16 17 2 1 2
+H008 (4) 16 0 0 1
+H006 (12) 16 1 0 1
+H014 (5) 18 0 0 0
+H013 (6) 19 0 0 3
+H001 (7) 20 2 0 2
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (9) 21 1 1 1
+H010 (2) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+ /---------------- H002
+ |
+ | /-------- H007
+ | |
+ /------15------14-------- H012
+ | | |
+ | | \-------- H011
+ | |
+ /------17 \---------------- H009
+ | |
+ | | /-------- H008
+ /-------18 \--------------16
+ | | \-------- H006
+ | |
+ /------19 \-------------------------------- H014
+ | |
+ /------20 \----------------------------------------- H013
+ | |
+ | \------------------------------------------------- H001
+ /------22
+ | | /-------- H003
+ | \-----------------------------------------------21
+-------23 \-------- H005
+ |
+ \----------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_20 --> node_19 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_19 --> node_18 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_18 --> node_17 10 1 1.000 2 ==> 1
+ node_17 --> node_15 9 1 0.500 2 --> 1
+ node_15 --> node_14 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_14 --> H007 12 1 0.333 2 ==> 1
+ node_14 --> H012 11 1 0.500 2 ==> 1
+ node_14 --> H011 13 1 0.333 0 --> 1
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_17 --> node_16 11 1 0.500 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_16 --> H006 9 1 0.500 2 --> 1
+ node_20 --> H001 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 20:
+
+Branch lengths and linkages for tree #20
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 22 23 0 0 0
+ 20 22 0 0 2
+ 19 20 2 2 3
+ 18 19 3 1 4
+ 17 18 2 1 3
+ 16 17 1 1 1
+ 15 16 0 0 1
+H002 (1) 15 0 0 0
+ 14 15 2 2 3
+H007 (3) 14 2 1 2
+H012 (10) 14 2 1 2
+H011 (13) 14 0 0 1
+H009 (11) 15 1 1 1
+H006 (12) 16 1 0 1
+H008 (4) 17 1 0 1
+H014 (5) 18 0 0 0
+H001 (7) 19 0 0 2
+H013 (6) 20 2 0 3
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (9) 21 1 1 1
+H010 (2) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+ /--------------- H002
+ |
+ | /------- H007
+ | |
+ /-----15------14------- H012
+ | | |
+ | | \------- H011
+ /-----16 |
+ | | \--------------- H009
+ | |
+ /-----17 \---------------------- H006
+ | |
+ /------18 \----------------------------- H008
+ | |
+ /-----19 \------------------------------------ H014
+ | |
+ /-----20 \-------------------------------------------- H001
+ | |
+ | \--------------------------------------------------- H013
+ /------22
+ | | /------- H003
+ | \-------------------------------------------------21
+------23 \------- H005
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_20 --> node_19 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_19 --> node_18 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_18 --> node_17 10 1 1.000 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_17 --> node_16 9 1 1.000 2 ==> 1
+ node_15 --> node_14 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_14 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_14 --> H012 11 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_16 --> H006 11 1 0.333 2 --> 1
+ node_17 --> H008 11 1 0.333 2 --> 1
+ node_20 --> H013 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 21:
+
+Branch lengths and linkages for tree #21
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 24 root 0 0 0
+ 23 24 0 0 0
+ 21 23 0 0 2
+ 20 21 2 2 2
+ 19 20 3 1 4
+ 18 19 2 1 2
+ 17 18 1 1 1
+H002 (1) 17 0 0 0
+ 16 17 0 0 1
+ 15 16 2 2 3
+ 14 15 0 0 1
+H007 (3) 14 2 1 2
+H011 (13) 14 0 0 1
+H012 (10) 15 2 0 2
+H006 (12) 16 1 0 1
+H009 (11) 17 1 1 1
+H008 (4) 18 1 1 1
+H014 (5) 19 0 0 0
+H013 (6) 20 0 0 3
+H001 (7) 21 2 0 2
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (9) 22 1 1 1
+H010 (2) 24 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+ /--------------------------- H002
+ |
+ | /------- H007
+ | /----14
+ | | \------- H011
+ /----17 /-----15
+ | | | \------------- H012
+ | +-----16
+ | | \-------------------- H006
+ /-----18 |
+ | | \--------------------------- H009
+ | |
+ /----19 \--------------------------------- H008
+ | |
+ /-----20 \---------------------------------------- H014
+ | |
+ /-----21 \---------------------------------------------- H013
+ | |
+ | \----------------------------------------------------- H001
+ /----23
+ | | /------- H003
+ | \---------------------------------------------------22
+------24 \------- H005
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_20 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_20 --> node_19 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_19 --> node_18 10 1 1.000 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_18 --> node_17 9 1 1.000 2 ==> 1
+ node_16 --> node_15 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_14 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_15 --> H012 11 1 0.333 2 --> 1
+ 13 1 0.333 1 --> 0
+ node_16 --> H006 11 1 0.333 2 --> 1
+ node_17 --> H009 12 1 0.333 2 ==> 1
+ node_18 --> H008 11 1 0.333 2 ==> 1
+ node_21 --> H001 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+ node_24 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 22:
+
+Branch lengths and linkages for tree #22
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 22 root 0 0 0
+ 21 22 0 0 0
+ 19 21 2 2 2
+ 18 19 3 3 4
+ 17 18 2 1 3
+ 16 17 1 1 1
+ 15 16 0 0 1
+H002 (1) 15 0 0 0
+ 14 15 2 2 3
+H007 (3) 14 2 1 2
+H012 (10) 14 2 1 2
+H011 (13) 14 0 0 1
+H009 (11) 15 1 1 1
+H006 (12) 16 1 0 1
+H008 (4) 17 1 0 1
+H014 (5) 18 0 0 0
+H013 (6) 19 0 0 1
+H001 (7) 21 2 2 2
+ 20 21 1 1 1
+H003 (8) 20 1 1 1
+H005 (9) 20 1 1 1
+H010 (2) 22 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+ /---------------- H002
+ |
+ | /-------- H007
+ | |
+ /------15------14-------- H012
+ | | |
+ | | \-------- H011
+ /------16 |
+ | | \---------------- H009
+ | |
+ /-------17 \------------------------ H006
+ | |
+ /------18 \-------------------------------- H008
+ | |
+ /------19 \----------------------------------------- H014
+ | |
+ | \------------------------------------------------- H013
+ |
+ /------21--------------------------------------------------------- H001
+ | |
+ | | /-------- H003
+-------22 \-----------------------------------------------20
+ | \-------- H005
+ |
+ \----------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_19 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_19 --> node_18 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_18 --> node_17 10 1 1.000 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_17 --> node_16 9 1 1.000 2 ==> 1
+ node_15 --> node_14 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_14 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_14 --> H012 11 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_16 --> H006 11 1 0.333 2 --> 1
+ node_17 --> H008 11 1 0.333 2 --> 1
+ node_21 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_21 --> node_20 3 1 1.000 2 ==> 1
+ node_20 --> H003 4 1 1.000 2 ==> 1
+ node_20 --> H005 12 1 0.333 2 ==> 1
+ node_22 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 23:
+
+Branch lengths and linkages for tree #23
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 25 root 0 0 0
+ 24 25 0 0 0
+ 22 24 0 0 2
+ 21 22 2 2 2
+ 20 21 3 1 4
+ 19 20 2 1 3
+ 18 19 1 1 1
+ 17 18 0 0 1
+ 14 17 0 0 1
+H002 (1) 14 0 0 0
+H009 (11) 14 1 1 1
+ 16 17 2 2 3
+ 15 16 0 0 1
+H007 (3) 15 2 1 2
+H011 (13) 15 0 0 1
+H012 (10) 16 2 0 2
+H006 (12) 18 1 0 1
+H008 (4) 19 1 0 1
+H014 (5) 20 0 0 0
+H013 (6) 21 0 0 3
+H001 (7) 22 2 0 2
+ 23 24 1 1 1
+H003 (8) 23 1 1 1
+H005 (9) 23 1 1 1
+H010 (2) 25 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+ /------- H002
+ /-----------14
+ | \------- H009
+ |
+ /-----17 /------- H007
+ | | /----15
+ | | | \------- H011
+ /----18 \-----16
+ | | \------------- H012
+ | |
+ /-----19 \--------------------------- H006
+ | |
+ /----20 \--------------------------------- H008
+ | |
+ /-----21 \---------------------------------------- H014
+ | |
+ /-----22 \---------------------------------------------- H013
+ | |
+ | \----------------------------------------------------- H001
+ /----24
+ | | /------- H003
+ | \---------------------------------------------------23
+------25 \------- H005
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_21 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_21 --> node_20 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_20 --> node_19 10 1 1.000 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_19 --> node_18 9 1 1.000 2 ==> 1
+ node_14 --> H009 12 1 0.333 2 ==> 1
+ node_17 --> node_16 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_16 --> H012 11 1 0.333 2 --> 1
+ 13 1 0.333 1 --> 0
+ node_18 --> H006 11 1 0.333 2 --> 1
+ node_19 --> H008 11 1 0.333 2 --> 1
+ node_22 --> H001 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ node_24 --> node_23 3 1 1.000 2 ==> 1
+ node_23 --> H003 4 1 1.000 2 ==> 1
+ node_23 --> H005 12 1 0.333 2 ==> 1
+ node_25 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 24:
+
+Branch lengths and linkages for tree #24
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 25 root 0 0 0
+ 24 25 0 0 0
+ 22 24 0 0 2
+ 21 22 2 2 2
+ 20 21 3 1 4
+ 19 20 2 1 3
+ 18 19 1 1 1
+ 14 18 0 0 1
+H002 (1) 14 0 0 0
+H009 (11) 14 1 1 1
+ 17 18 0 0 1
+ 16 17 2 2 3
+ 15 16 0 0 1
+H007 (3) 15 2 1 2
+H011 (13) 15 0 0 1
+H012 (10) 16 2 0 2
+H006 (12) 17 1 0 1
+H008 (4) 19 1 0 1
+H014 (5) 20 0 0 0
+H013 (6) 21 0 0 3
+H001 (7) 22 2 0 2
+ 23 24 1 1 1
+H003 (8) 23 1 1 1
+H005 (9) 23 1 1 1
+H010 (2) 25 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+ /------- H002
+ /------------------14
+ | \------- H009
+ |
+ | /------- H007
+ /----18 /----15
+ | | | \------- H011
+ | | /-----16
+ | | | \------------- H012
+ /-----19 \-----17
+ | | \-------------------- H006
+ | |
+ /----20 \--------------------------------- H008
+ | |
+ /-----21 \---------------------------------------- H014
+ | |
+ /-----22 \---------------------------------------------- H013
+ | |
+ | \----------------------------------------------------- H001
+ /----24
+ | | /------- H003
+ | \---------------------------------------------------23
+------25 \------- H005
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_21 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_21 --> node_20 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_20 --> node_19 10 1 1.000 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_19 --> node_18 9 1 1.000 2 ==> 1
+ node_14 --> H009 12 1 0.333 2 ==> 1
+ node_17 --> node_16 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_16 --> H012 11 1 0.333 2 --> 1
+ 13 1 0.333 1 --> 0
+ node_17 --> H006 11 1 0.333 2 --> 1
+ node_19 --> H008 11 1 0.333 2 --> 1
+ node_22 --> H001 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ node_24 --> node_23 3 1 1.000 2 ==> 1
+ node_23 --> H003 4 1 1.000 2 ==> 1
+ node_23 --> H005 12 1 0.333 2 ==> 1
+ node_25 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 25:
+
+Branch lengths and linkages for tree #25
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 24 root 0 0 0
+ 23 24 0 0 0
+ 21 23 0 0 2
+ 20 21 2 2 2
+ 19 20 3 1 4
+ 18 19 2 1 3
+ 17 18 1 1 1
+ 14 17 0 0 1
+H002 (1) 14 0 0 0
+H009 (11) 14 1 1 1
+ 16 17 2 2 3
+ 15 16 0 0 1
+H007 (3) 15 2 1 2
+H011 (13) 15 0 0 1
+H012 (10) 16 2 0 2
+H006 (12) 17 1 0 1
+H008 (4) 18 1 0 1
+H014 (5) 19 0 0 0
+H013 (6) 20 0 0 3
+H001 (7) 21 2 0 2
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (9) 22 1 1 1
+H010 (2) 24 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+ /------- H002
+ /-------------14
+ | \------- H009
+ |
+ | /------- H007
+ | /------15
+ /-----17 | \------- H011
+ | +-----16
+ | | \--------------- H012
+ /-----18 |
+ | | \---------------------- H006
+ | |
+ /------19 \----------------------------- H008
+ | |
+ /-----20 \------------------------------------ H014
+ | |
+ /-----21 \-------------------------------------------- H013
+ | |
+ | \--------------------------------------------------- H001
+ /------23
+ | | /------- H003
+ | \-------------------------------------------------22
+------24 \------- H005
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_20 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_20 --> node_19 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_19 --> node_18 10 1 1.000 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_18 --> node_17 9 1 1.000 2 ==> 1
+ node_14 --> H009 12 1 0.333 2 ==> 1
+ node_17 --> node_16 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_16 --> H012 11 1 0.333 2 --> 1
+ 13 1 0.333 1 --> 0
+ node_17 --> H006 11 1 0.333 2 --> 1
+ node_18 --> H008 11 1 0.333 2 --> 1
+ node_21 --> H001 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+ node_24 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 26:
+
+Branch lengths and linkages for tree #26
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 25 root 0 0 0
+ 24 25 0 0 0
+ 22 24 0 0 2
+ 21 22 2 2 2
+ 20 21 3 1 4
+ 19 20 2 1 3
+ 18 19 1 1 1
+ 17 18 0 0 1
+H002 (1) 17 0 0 0
+ 16 17 0 0 1
+ 15 16 2 2 3
+H007 (3) 15 2 0 2
+ 14 15 0 0 1
+H012 (10) 14 2 1 2
+H011 (13) 14 0 0 1
+H009 (11) 16 1 0 1
+H006 (12) 18 1 0 1
+H008 (4) 19 1 0 1
+H014 (5) 20 0 0 0
+H013 (6) 21 0 0 3
+H001 (7) 22 2 0 2
+ 23 24 1 1 1
+H003 (8) 23 1 1 1
+H005 (9) 23 1 1 1
+H010 (2) 25 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+ /------------------------ H002
+ |
+ | /------------ H007
+ /----17 |
+ | | /----15 /------ H012
+ | | | \----14
+ | \----16 \------ H011
+ /----18 |
+ | | \------------------ H009
+ | |
+ /-----19 \------------------------------ H006
+ | |
+ /----20 \------------------------------------ H008
+ | |
+ /----21 \------------------------------------------- H014
+ | |
+ /----22 \------------------------------------------------- H013
+ | |
+ | \------------------------------------------------------- H001
+ /----24
+ | | /------ H003
+ | \-----------------------------------------------------23
+-----25 \------ H005
+ |
+ \------------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_21 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_21 --> node_20 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_20 --> node_19 10 1 1.000 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_19 --> node_18 9 1 1.000 2 ==> 1
+ node_16 --> node_15 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 --> 1
+ 13 1 0.333 1 --> 0
+ node_14 --> H012 11 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_16 --> H009 12 1 0.333 2 --> 1
+ node_18 --> H006 11 1 0.333 2 --> 1
+ node_19 --> H008 11 1 0.333 2 --> 1
+ node_22 --> H001 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ node_24 --> node_23 3 1 1.000 2 ==> 1
+ node_23 --> H003 4 1 1.000 2 ==> 1
+ node_23 --> H005 12 1 0.333 2 ==> 1
+ node_25 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 27:
+
+Branch lengths and linkages for tree #27
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 22 root 0 0 0
+ 21 22 0 0 0
+ 19 21 2 2 2
+ 18 19 3 3 3
+ 17 18 0 0 1
+ 16 17 3 3 3
+ 15 16 0 0 1
+H002 (1) 15 0 0 0
+ 14 15 1 1 1
+H008 (4) 14 1 1 1
+H014 (5) 14 1 1 1
+H006 (12) 15 1 1 1
+H009 (11) 16 1 0 1
+H007 (3) 17 1 0 1
+H012 (10) 18 1 1 1
+H011 (13) 18 1 1 1
+H013 (6) 19 0 0 0
+H001 (7) 21 2 2 2
+ 20 21 1 1 1
+H003 (8) 20 1 1 1
+H005 (9) 20 1 1 1
+H010 (2) 22 1 1 1
+-------------------------------------------------------------------------
+Sum 22
+
+Tree length = 22
+Consistency index (CI) = 0.5909
+Homoplasy index (HI) = 0.4091
+CI excluding uninformative characters = 0.5500
+HI excluding uninformative characters = 0.4500
+Retention index (RI) = 0.7805
+Rescaled consistency index (RC) = 0.4612
+
+ /---------------- H002
+ |
+ | /-------- H008
+ /------15------14
+ | | \-------- H014
+ | |
+ /------16 \---------------- H006
+ | |
+ /-------17 \------------------------ H009
+ | |
+ | \-------------------------------- H007
+ /------18
+ | +----------------------------------------- H012
+ | |
+ /------19 \----------------------------------------- H011
+ | |
+ | \------------------------------------------------- H013
+ |
+ /------21--------------------------------------------------------- H001
+ | |
+ | | /-------- H003
+-------22 \-----------------------------------------------20
+ | \-------- H005
+ |
+ \----------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_19 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_19 --> node_18 8 1 1.000 2 ==> 1
+ 9 1 0.500 2 ==> 1
+ 10 1 0.500 2 ==> 1
+ node_17 --> node_16 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ 13 1 0.500 0 ==> 1
+ node_15 --> node_14 9 1 0.500 1 ==> 2
+ node_14 --> H008 11 1 0.333 2 ==> 1
+ node_14 --> H014 10 1 0.500 1 ==> 2
+ node_15 --> H006 11 1 0.333 2 ==> 1
+ node_16 --> H009 12 1 0.333 2 --> 1
+ node_17 --> H007 12 1 0.333 2 --> 1
+ node_18 --> H012 11 1 0.333 2 ==> 1
+ node_18 --> H011 13 1 0.500 0 ==> 1
+ node_21 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_21 --> node_20 3 1 1.000 2 ==> 1
+ node_20 --> H003 4 1 1.000 2 ==> 1
+ node_20 --> H005 12 1 0.333 2 ==> 1
+ node_22 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 28:
+
+Branch lengths and linkages for tree #28
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 22 root 0 0 0
+ 21 22 0 0 0
+ 19 21 2 2 2
+ 18 19 3 3 3
+ 17 18 0 0 1
+ 16 17 3 3 3
+ 15 16 0 0 1
+H002 (1) 15 0 0 0
+ 14 15 1 1 1
+H008 (4) 14 1 1 1
+H006 (12) 14 0 0 0
+H014 (5) 15 2 2 2
+H009 (11) 16 1 0 1
+H007 (3) 17 1 0 1
+H012 (10) 18 1 1 1
+H011 (13) 18 1 1 1
+H013 (6) 19 0 0 0
+H001 (7) 21 2 2 2
+ 20 21 1 1 1
+H003 (8) 20 1 1 1
+H005 (9) 20 1 1 1
+H010 (2) 22 1 1 1
+-------------------------------------------------------------------------
+Sum 22
+
+Tree length = 22
+Consistency index (CI) = 0.5909
+Homoplasy index (HI) = 0.4091
+CI excluding uninformative characters = 0.5500
+HI excluding uninformative characters = 0.4500
+Retention index (RI) = 0.7805
+Rescaled consistency index (RC) = 0.4612
+
+ /---------------- H002
+ |
+ | /-------- H008
+ /------15------14
+ | | \-------- H006
+ | |
+ /------16 \---------------- H014
+ | |
+ /-------17 \------------------------ H009
+ | |
+ | \-------------------------------- H007
+ /------18
+ | +----------------------------------------- H012
+ | |
+ /------19 \----------------------------------------- H011
+ | |
+ | \------------------------------------------------- H013
+ |
+ /------21--------------------------------------------------------- H001
+ | |
+ | | /-------- H003
+-------22 \-----------------------------------------------20
+ | \-------- H005
+ |
+ \----------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_19 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_19 --> node_18 8 1 1.000 2 ==> 1
+ 9 1 0.333 2 ==> 1
+ 10 1 0.500 2 ==> 1
+ node_17 --> node_16 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ 13 1 0.500 0 ==> 1
+ node_15 --> node_14 11 1 0.500 2 ==> 1
+ node_14 --> H008 9 1 0.333 1 ==> 2
+ node_15 --> H014 9 1 0.333 1 ==> 2
+ 10 1 0.500 1 ==> 2
+ node_16 --> H009 12 1 0.333 2 --> 1
+ node_17 --> H007 12 1 0.333 2 --> 1
+ node_18 --> H012 11 1 0.500 2 ==> 1
+ node_18 --> H011 13 1 0.500 0 ==> 1
+ node_21 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_21 --> node_20 3 1 1.000 2 ==> 1
+ node_20 --> H003 4 1 1.000 2 ==> 1
+ node_20 --> H005 12 1 0.333 2 ==> 1
+ node_22 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 29:
+
+Branch lengths and linkages for tree #29
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 22 23 0 0 0
+ 20 22 2 2 2
+ 19 20 3 3 3
+ 18 19 0 0 1
+ 17 18 3 3 3
+ 16 17 0 0 1
+H002 (1) 16 0 0 0
+ 15 16 0 0 1
+ 14 15 1 1 1
+H008 (4) 14 1 0 1
+H006 (12) 14 0 0 1
+H014 (5) 15 2 1 2
+H009 (11) 17 1 0 1
+H007 (3) 18 1 0 1
+H012 (10) 19 1 1 1
+H011 (13) 19 1 1 1
+H013 (6) 20 0 0 0
+H001 (7) 22 2 2 2
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (9) 21 1 1 1
+H010 (2) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 22
+
+Tree length = 22
+Consistency index (CI) = 0.5909
+Homoplasy index (HI) = 0.4091
+CI excluding uninformative characters = 0.5500
+HI excluding uninformative characters = 0.4500
+Retention index (RI) = 0.7805
+Rescaled consistency index (RC) = 0.4612
+
+ /---------------------- H002
+ |
+ | /------- H008
+ /-----16 /------14
+ | | | \------- H006
+ | \-----15
+ /-----17 \--------------- H014
+ | |
+ /------18 \----------------------------- H009
+ | |
+ | \------------------------------------ H007
+ /-----19
+ | +-------------------------------------------- H012
+ | |
+ /-----20 \-------------------------------------------- H011
+ | |
+ | \--------------------------------------------------- H013
+ |
+ /------22---------------------------------------------------------- H001
+ | |
+ | | /------- H003
+------23 \-------------------------------------------------21
+ | \------- H005
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_20 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_20 --> node_19 8 1 1.000 2 ==> 1
+ 9 1 0.333 2 ==> 1
+ 10 1 0.500 2 ==> 1
+ node_18 --> node_17 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ 13 1 0.500 0 ==> 1
+ node_15 --> node_14 11 1 0.500 2 ==> 1
+ node_14 --> H008 9 1 0.333 1 --> 2
+ node_15 --> H014 9 1 0.333 1 --> 2
+ 10 1 0.500 1 ==> 2
+ node_17 --> H009 12 1 0.333 2 --> 1
+ node_18 --> H007 12 1 0.333 2 --> 1
+ node_19 --> H012 11 1 0.500 2 ==> 1
+ node_19 --> H011 13 1 0.500 0 ==> 1
+ node_22 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 30:
+
+Branch lengths and linkages for tree #30
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 24 root 0 0 0
+ 23 24 0 0 0
+ 21 23 2 2 2
+ 20 21 3 3 4
+ 19 20 2 1 3
+ 18 19 1 1 1
+ 17 18 0 0 1
+H002 (1) 17 0 0 0
+ 16 17 0 0 1
+ 15 16 2 2 3
+H007 (3) 15 2 0 2
+ 14 15 0 0 1
+H012 (10) 14 2 1 2
+H011 (13) 14 0 0 1
+H009 (11) 16 1 0 1
+H006 (12) 18 1 0 1
+H008 (4) 19 1 0 1
+H014 (5) 20 0 0 0
+H013 (6) 21 0 0 1
+H001 (7) 23 2 2 2
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (9) 22 1 1 1
+H010 (2) 24 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+ /--------------------------- H002
+ |
+ | /------------- H007
+ /----17 |
+ | | /-----15 /------- H012
+ | | | \----14
+ | \-----16 \------- H011
+ /-----18 |
+ | | \-------------------- H009
+ | |
+ /----19 \--------------------------------- H006
+ | |
+ /-----20 \---------------------------------------- H008
+ | |
+ /-----21 \---------------------------------------------- H014
+ | |
+ | \----------------------------------------------------- H013
+ |
+ /----23------------------------------------------------------------ H001
+ | |
+ | | /------- H003
+------24 \---------------------------------------------------22
+ | \------- H005
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_21 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_21 --> node_20 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_20 --> node_19 10 1 1.000 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_19 --> node_18 9 1 1.000 2 ==> 1
+ node_16 --> node_15 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 --> 1
+ 13 1 0.333 1 --> 0
+ node_14 --> H012 11 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_16 --> H009 12 1 0.333 2 --> 1
+ node_18 --> H006 11 1 0.333 2 --> 1
+ node_19 --> H008 11 1 0.333 2 --> 1
+ node_23 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+ node_24 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 31:
+
+Branch lengths and linkages for tree #31
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 24 root 0 0 0
+ 23 24 0 0 0
+ 21 23 2 2 3
+ 20 21 3 3 4
+ 19 20 2 1 3
+ 18 19 1 1 1
+ 17 18 0 0 1
+H002 (1) 17 0 0 0
+ 16 17 0 0 1
+ 15 16 2 2 3
+H007 (3) 15 2 0 2
+ 14 15 0 0 1
+H012 (10) 14 2 1 2
+H011 (13) 14 0 0 1
+H009 (11) 16 1 0 1
+H006 (12) 18 1 0 1
+H008 (4) 19 1 0 1
+H014 (5) 20 0 0 0
+H001 (7) 21 0 0 0
+H013 (6) 23 2 2 3
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (9) 22 1 1 1
+H010 (2) 24 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+ /--------------------------- H002
+ |
+ | /------------- H007
+ /----17 |
+ | | /-----15 /------- H012
+ | | | \----14
+ | \-----16 \------- H011
+ /-----18 |
+ | | \-------------------- H009
+ | |
+ /----19 \--------------------------------- H006
+ | |
+ /-----20 \---------------------------------------- H008
+ | |
+ /-----21 \---------------------------------------------- H014
+ | |
+ | \----------------------------------------------------- H001
+ |
+ /----23------------------------------------------------------------ H013
+ | |
+ | | /------- H003
+------24 \---------------------------------------------------22
+ | \------- H005
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_21 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_21 --> node_20 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_20 --> node_19 10 1 1.000 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_19 --> node_18 9 1 1.000 2 ==> 1
+ node_16 --> node_15 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 --> 1
+ 13 1 0.333 1 --> 0
+ node_14 --> H012 11 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_16 --> H009 12 1 0.333 2 --> 1
+ node_18 --> H006 11 1 0.333 2 --> 1
+ node_19 --> H008 11 1 0.333 2 --> 1
+ node_23 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+ node_24 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 32:
+
+Branch lengths and linkages for tree #32
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 22 23 0 0 0
+ 20 22 2 2 2
+ 19 20 1 1 1
+ 18 19 2 2 2
+ 17 18 0 0 1
+ 16 17 3 3 3
+ 15 16 0 0 1
+H002 (1) 15 0 0 0
+ 14 15 1 1 1
+H008 (4) 14 1 1 1
+H006 (12) 14 0 0 0
+H009 (11) 16 1 0 1
+H007 (3) 17 1 0 1
+H012 (10) 18 1 1 1
+H011 (13) 18 1 1 1
+H014 (5) 19 2 2 2
+H013 (6) 20 0 0 0
+H001 (7) 22 2 2 2
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (9) 21 1 1 1
+H010 (2) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 22
+
+Tree length = 22
+Consistency index (CI) = 0.5909
+Homoplasy index (HI) = 0.4091
+CI excluding uninformative characters = 0.5500
+HI excluding uninformative characters = 0.4500
+Retention index (RI) = 0.7805
+Rescaled consistency index (RC) = 0.4612
+
+ /--------------- H002
+ |
+ /-----15 /------- H008
+ | \------14
+ /-----16 \------- H006
+ | |
+ /-----17 \---------------------- H009
+ | |
+ | \----------------------------- H007
+ /------18
+ | +------------------------------------ H012
+ | |
+ /-----19 \------------------------------------ H011
+ | |
+ /-----20 \-------------------------------------------- H014
+ | |
+ | \--------------------------------------------------- H013
+ |
+ /------22---------------------------------------------------------- H001
+ | |
+ | | /------- H003
+------23 \-------------------------------------------------21
+ | \------- H005
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_20 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_20 --> node_19 8 1 1.000 2 ==> 1
+ node_19 --> node_18 9 1 0.500 2 ==> 1
+ 10 1 1.000 2 ==> 1
+ node_17 --> node_16 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ 13 1 0.500 0 ==> 1
+ node_15 --> node_14 11 1 0.500 2 ==> 1
+ node_14 --> H008 9 1 0.500 1 ==> 2
+ node_16 --> H009 12 1 0.333 2 --> 1
+ node_17 --> H007 12 1 0.333 2 --> 1
+ node_18 --> H012 11 1 0.500 2 ==> 1
+ node_18 --> H011 13 1 0.500 0 ==> 1
+ node_19 --> H014 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_22 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 33:
+
+Branch lengths and linkages for tree #33
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 22 23 0 0 0
+ 20 22 2 2 2
+ 19 20 3 3 3
+ 18 19 1 1 1
+ 17 18 3 3 3
+ 16 17 0 0 1
+ 15 16 1 1 1
+ 14 15 0 0 1
+H002 (1) 14 0 0 0
+H009 (11) 14 1 1 1
+H014 (5) 15 2 1 2
+H008 (4) 16 1 0 1
+H006 (12) 17 0 0 0
+H012 (10) 18 0 0 0
+H007 (3) 19 1 1 1
+H011 (13) 19 1 1 1
+H013 (6) 20 0 0 0
+H001 (7) 22 2 2 2
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (9) 21 1 1 1
+H010 (2) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 22
+
+Tree length = 22
+Consistency index (CI) = 0.5909
+Homoplasy index (HI) = 0.4091
+CI excluding uninformative characters = 0.5500
+HI excluding uninformative characters = 0.4500
+Retention index (RI) = 0.7805
+Rescaled consistency index (RC) = 0.4612
+
+ /------- H002
+ /------14
+ | \------- H009
+ /-----15
+ | \--------------- H014
+ /-----16
+ | \---------------------- H008
+ /-----17
+ | \----------------------------- H006
+ /------18
+ | \------------------------------------ H012
+ |
+ /-----19-------------------------------------------- H007
+ | |
+ /-----20 \-------------------------------------------- H011
+ | |
+ | \--------------------------------------------------- H013
+ |
+ /------22---------------------------------------------------------- H001
+ | |
+ | | /------- H003
+------23 \-------------------------------------------------21
+ | \------- H005
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_20 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_20 --> node_19 8 1 1.000 2 ==> 1
+ 9 1 0.333 2 ==> 1
+ 10 1 0.500 2 ==> 1
+ node_19 --> node_18 11 1 0.500 2 ==> 1
+ node_18 --> node_17 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ 13 1 0.500 0 ==> 1
+ node_16 --> node_15 11 1 0.500 1 ==> 2
+ node_14 --> H009 12 1 0.333 2 ==> 1
+ node_15 --> H014 9 1 0.333 1 --> 2
+ 10 1 0.500 1 ==> 2
+ node_16 --> H008 9 1 0.333 1 --> 2
+ node_19 --> H007 12 1 0.333 2 ==> 1
+ node_19 --> H011 13 1 0.500 0 ==> 1
+ node_22 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 34:
+
+Branch lengths and linkages for tree #34
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 22 root 0 0 0
+ 21 22 0 0 0
+ 19 21 2 2 2
+ 18 19 3 3 3
+ 17 18 0 0 1
+ 16 17 3 3 3
+ 15 16 0 0 1
+H002 (1) 15 0 0 0
+ 14 15 1 1 1
+H008 (4) 14 1 1 1
+H014 (5) 14 1 1 1
+H009 (11) 15 1 1 1
+H006 (12) 16 1 0 1
+H012 (10) 17 1 0 1
+H007 (3) 18 1 1 1
+H011 (13) 18 1 1 1
+H013 (6) 19 0 0 0
+H001 (7) 21 2 2 2
+ 20 21 1 1 1
+H003 (8) 20 1 1 1
+H005 (9) 20 1 1 1
+H010 (2) 22 1 1 1
+-------------------------------------------------------------------------
+Sum 22
+
+Tree length = 22
+Consistency index (CI) = 0.5909
+Homoplasy index (HI) = 0.4091
+CI excluding uninformative characters = 0.5500
+HI excluding uninformative characters = 0.4500
+Retention index (RI) = 0.7805
+Rescaled consistency index (RC) = 0.4612
+
+ /---------------- H002
+ |
+ | /-------- H008
+ /------15------14
+ | | \-------- H014
+ | |
+ /------16 \---------------- H009
+ | |
+ /-------17 \------------------------ H006
+ | |
+ | \-------------------------------- H012
+ /------18
+ | +----------------------------------------- H007
+ | |
+ /------19 \----------------------------------------- H011
+ | |
+ | \------------------------------------------------- H013
+ |
+ /------21--------------------------------------------------------- H001
+ | |
+ | | /-------- H003
+-------22 \-----------------------------------------------20
+ | \-------- H005
+ |
+ \----------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_19 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_19 --> node_18 8 1 1.000 2 ==> 1
+ 9 1 0.500 2 ==> 1
+ 10 1 0.500 2 ==> 1
+ node_17 --> node_16 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ 13 1 0.500 0 ==> 1
+ node_15 --> node_14 9 1 0.500 1 ==> 2
+ node_14 --> H008 11 1 0.333 2 ==> 1
+ node_14 --> H014 10 1 0.500 1 ==> 2
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_16 --> H006 11 1 0.333 2 --> 1
+ node_17 --> H012 11 1 0.333 2 --> 1
+ node_18 --> H007 12 1 0.333 2 ==> 1
+ node_18 --> H011 13 1 0.500 0 ==> 1
+ node_21 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_21 --> node_20 3 1 1.000 2 ==> 1
+ node_20 --> H003 4 1 1.000 2 ==> 1
+ node_20 --> H005 12 1 0.333 2 ==> 1
+ node_22 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 35:
+
+Branch lengths and linkages for tree #35
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 24 root 0 0 0
+ 23 24 0 0 0
+ 21 23 2 2 2
+ 20 21 3 3 4
+ 19 20 2 1 3
+ 18 19 1 1 1
+ 17 18 0 0 1
+ 14 17 0 0 1
+H002 (1) 14 0 0 0
+H009 (11) 14 1 1 1
+ 16 17 2 2 3
+ 15 16 0 0 1
+H007 (3) 15 2 1 2
+H011 (13) 15 0 0 1
+H012 (10) 16 2 0 2
+H006 (12) 18 1 0 1
+H008 (4) 19 1 0 1
+H014 (5) 20 0 0 0
+H013 (6) 21 0 0 1
+H001 (7) 23 2 2 2
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (9) 22 1 1 1
+H010 (2) 24 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+ /------- H002
+ /-------------14
+ | \------- H009
+ |
+ /-----17 /------- H007
+ | | /------15
+ | | | \------- H011
+ /-----18 \-----16
+ | | \--------------- H012
+ | |
+ /------19 \----------------------------- H006
+ | |
+ /-----20 \------------------------------------ H008
+ | |
+ /-----21 \-------------------------------------------- H014
+ | |
+ | \--------------------------------------------------- H013
+ |
+ /------23---------------------------------------------------------- H001
+ | |
+ | | /------- H003
+------24 \-------------------------------------------------22
+ | \------- H005
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_21 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_21 --> node_20 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_20 --> node_19 10 1 1.000 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_19 --> node_18 9 1 1.000 2 ==> 1
+ node_14 --> H009 12 1 0.333 2 ==> 1
+ node_17 --> node_16 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_16 --> H012 11 1 0.333 2 --> 1
+ 13 1 0.333 1 --> 0
+ node_18 --> H006 11 1 0.333 2 --> 1
+ node_19 --> H008 11 1 0.333 2 --> 1
+ node_23 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+ node_24 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 36:
+
+Branch lengths and linkages for tree #36
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 22 root 0 0 0
+ 21 22 0 0 0
+ 19 21 2 2 2
+ 18 19 3 3 3
+ 17 18 0 0 1
+ 16 17 3 3 3
+ 14 16 0 0 1
+H002 (1) 14 0 0 0
+H014 (5) 14 2 2 2
+H009 (11) 14 1 1 1
+ 15 16 1 0 1
+H008 (4) 15 1 1 1
+H006 (12) 15 0 0 0
+H012 (10) 17 1 0 1
+H007 (3) 18 1 1 1
+H011 (13) 18 1 1 1
+H013 (6) 19 0 0 0
+H001 (7) 21 2 2 2
+ 20 21 1 1 1
+H003 (8) 20 1 1 1
+H005 (9) 20 1 1 1
+H010 (2) 22 1 1 1
+-------------------------------------------------------------------------
+Sum 22
+
+Tree length = 22
+Consistency index (CI) = 0.5909
+Homoplasy index (HI) = 0.4091
+CI excluding uninformative characters = 0.5500
+HI excluding uninformative characters = 0.4500
+Retention index (RI) = 0.7805
+Rescaled consistency index (RC) = 0.4612
+
+ /--------- H002
+ |
+ /-------14--------- H014
+ | |
+ | \--------- H009
+ /-------16
+ | | /--------- H008
+ | \-------15
+ /--------17 \--------- H006
+ | |
+ | \--------------------------- H012
+ /-------18
+ | +------------------------------------- H007
+ | |
+ /-------19 \------------------------------------- H011
+ | |
+ | \---------------------------------------------- H013
+ |
+ /-------21------------------------------------------------------- H001
+ | |
+ | | /--------- H003
+--------22 \--------------------------------------------20
+ | \--------- H005
+ |
+ \---------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_19 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_19 --> node_18 8 1 1.000 2 ==> 1
+ 9 1 0.333 2 ==> 1
+ 10 1 0.500 2 ==> 1
+ node_17 --> node_16 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ 13 1 0.500 0 ==> 1
+ node_14 --> H014 9 1 0.333 1 ==> 2
+ 10 1 0.500 1 ==> 2
+ node_14 --> H009 12 1 0.333 2 ==> 1
+ node_16 --> node_15 11 1 0.500 2 --> 1
+ node_15 --> H008 9 1 0.333 1 ==> 2
+ node_17 --> H012 11 1 0.500 2 --> 1
+ node_18 --> H007 12 1 0.333 2 ==> 1
+ node_18 --> H011 13 1 0.500 0 ==> 1
+ node_21 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_21 --> node_20 3 1 1.000 2 ==> 1
+ node_20 --> H003 4 1 1.000 2 ==> 1
+ node_20 --> H005 12 1 0.333 2 ==> 1
+ node_22 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 37:
+
+Branch lengths and linkages for tree #37
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 22 23 0 0 0
+ 20 22 2 2 2
+ 19 20 1 1 1
+ 18 19 2 2 2
+ 17 18 0 0 1
+ 16 17 3 3 3
+ 14 16 0 0 1
+H002 (1) 14 0 0 0
+H009 (11) 14 1 1 1
+ 15 16 1 0 1
+H008 (4) 15 1 1 1
+H006 (12) 15 0 0 0
+H012 (10) 17 1 0 1
+H007 (3) 18 1 1 1
+H011 (13) 18 1 1 1
+H014 (5) 19 2 2 2
+H013 (6) 20 0 0 0
+H001 (7) 22 2 2 2
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (9) 21 1 1 1
+H010 (2) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 22
+
+Tree length = 22
+Consistency index (CI) = 0.5909
+Homoplasy index (HI) = 0.4091
+CI excluding uninformative characters = 0.5500
+HI excluding uninformative characters = 0.4500
+Retention index (RI) = 0.7805
+Rescaled consistency index (RC) = 0.4612
+
+ /-------- H002
+ /------14
+ | \-------- H009
+ /------16
+ | | /-------- H008
+ | \------15
+ /------17 \-------- H006
+ | |
+ | \------------------------ H012
+ /-------18
+ | +-------------------------------- H007
+ | |
+ /------19 \-------------------------------- H011
+ | |
+ /------20 \----------------------------------------- H014
+ | |
+ | \------------------------------------------------- H013
+ |
+ /------22--------------------------------------------------------- H001
+ | |
+ | | /-------- H003
+-------23 \-----------------------------------------------21
+ | \-------- H005
+ |
+ \----------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_20 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_20 --> node_19 8 1 1.000 2 ==> 1
+ node_19 --> node_18 9 1 0.500 2 ==> 1
+ 10 1 1.000 2 ==> 1
+ node_17 --> node_16 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ 13 1 0.500 0 ==> 1
+ node_14 --> H009 12 1 0.333 2 ==> 1
+ node_16 --> node_15 11 1 0.500 2 --> 1
+ node_15 --> H008 9 1 0.500 1 ==> 2
+ node_17 --> H012 11 1 0.500 2 --> 1
+ node_18 --> H007 12 1 0.333 2 ==> 1
+ node_18 --> H011 13 1 0.500 0 ==> 1
+ node_19 --> H014 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_22 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 38:
+
+Branch lengths and linkages for tree #38
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 24 root 0 0 0
+ 23 24 0 0 0
+ 21 23 2 2 3
+ 20 21 3 3 4
+ 19 20 2 1 3
+ 18 19 1 1 1
+ 17 18 0 0 1
+ 14 17 0 0 1
+H002 (1) 14 0 0 0
+H009 (11) 14 1 1 1
+ 16 17 2 2 3
+ 15 16 0 0 1
+H007 (3) 15 2 1 2
+H011 (13) 15 0 0 1
+H012 (10) 16 2 0 2
+H006 (12) 18 1 0 1
+H008 (4) 19 1 0 1
+H014 (5) 20 0 0 0
+H001 (7) 21 0 0 0
+H013 (6) 23 2 2 3
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (9) 22 1 1 1
+H010 (2) 24 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+ /------- H002
+ /-------------14
+ | \------- H009
+ |
+ /-----17 /------- H007
+ | | /------15
+ | | | \------- H011
+ /-----18 \-----16
+ | | \--------------- H012
+ | |
+ /------19 \----------------------------- H006
+ | |
+ /-----20 \------------------------------------ H008
+ | |
+ /-----21 \-------------------------------------------- H014
+ | |
+ | \--------------------------------------------------- H001
+ |
+ /------23---------------------------------------------------------- H013
+ | |
+ | | /------- H003
+------24 \-------------------------------------------------22
+ | \------- H005
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_21 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_21 --> node_20 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_20 --> node_19 10 1 1.000 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_19 --> node_18 9 1 1.000 2 ==> 1
+ node_14 --> H009 12 1 0.333 2 ==> 1
+ node_17 --> node_16 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_16 --> H012 11 1 0.333 2 --> 1
+ 13 1 0.333 1 --> 0
+ node_18 --> H006 11 1 0.333 2 --> 1
+ node_19 --> H008 11 1 0.333 2 --> 1
+ node_23 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+ node_24 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 39:
+
+Branch lengths and linkages for tree #39
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 22 root 0 0 0
+ 21 22 0 0 0
+ 19 21 2 2 2
+ 18 19 1 1 2
+ 16 18 2 2 3
+ 15 16 2 0 2
+ 14 15 1 1 1
+H002 (1) 14 0 0 0
+H009 (11) 14 1 1 1
+H006 (12) 14 1 1 1
+H008 (4) 15 1 1 1
+H014 (5) 16 0 0 1
+ 17 18 2 1 2
+H007 (3) 17 1 1 1
+H012 (10) 17 1 1 1
+H011 (13) 17 1 1 1
+H013 (6) 19 0 0 0
+H001 (7) 21 2 2 2
+ 20 21 1 1 1
+H003 (8) 20 1 1 1
+H005 (9) 20 1 1 1
+H010 (2) 22 1 1 1
+-------------------------------------------------------------------------
+Sum 22
+
+Tree length = 22
+Consistency index (CI) = 0.5909
+Homoplasy index (HI) = 0.4091
+CI excluding uninformative characters = 0.5500
+HI excluding uninformative characters = 0.4500
+Retention index (RI) = 0.7805
+Rescaled consistency index (RC) = 0.4612
+
+ /--------- H002
+ |
+ /-------14--------- H009
+ | |
+ /-------15 \--------- H006
+ | |
+ /--------16 \------------------ H008
+ | |
+ | \--------------------------- H014
+ /-------18
+ | | /--------- H007
+ | | |
+ | \--------------------------17--------- H012
+ /-------19 |
+ | | \--------- H011
+ | |
+ | \---------------------------------------------- H013
+ /-------21
+ | +------------------------------------------------------- H001
+ | |
+ | | /--------- H003
+--------22 \--------------------------------------------20
+ | \--------- H005
+ |
+ \---------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_19 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_19 --> node_18 8 1 1.000 2 ==> 1
+ node_18 --> node_16 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_16 --> node_15 10 1 0.500 2 --> 1
+ 13 1 0.500 0 --> 1
+ node_15 --> node_14 9 1 0.500 2 ==> 1
+ node_14 --> H009 12 1 0.333 2 ==> 1
+ node_14 --> H006 11 1 0.333 2 ==> 1
+ node_15 --> H008 11 1 0.333 2 ==> 1
+ node_18 --> node_17 9 1 0.500 2 ==> 1
+ 10 1 0.500 2 --> 1
+ node_17 --> H007 12 1 0.333 2 ==> 1
+ node_17 --> H012 11 1 0.333 2 ==> 1
+ node_17 --> H011 13 1 0.500 0 ==> 1
+ node_21 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_21 --> node_20 3 1 1.000 2 ==> 1
+ node_20 --> H003 4 1 1.000 2 ==> 1
+ node_20 --> H005 12 1 0.333 2 ==> 1
+ node_22 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 40:
+
+Branch lengths and linkages for tree #40
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 22 root 0 0 0
+ 21 22 0 0 0
+ 19 21 2 2 2
+ 18 19 1 1 3
+ 16 18 2 2 3
+ 15 16 3 0 3
+H002 (1) 15 0 0 0
+ 14 15 1 1 1
+H008 (4) 14 1 1 1
+H006 (12) 14 0 0 0
+H009 (11) 15 1 1 1
+H014 (5) 16 0 0 2
+ 17 18 2 0 2
+H007 (3) 17 1 1 1
+H012 (10) 17 1 1 1
+H011 (13) 17 1 1 1
+H013 (6) 19 0 0 0
+H001 (7) 21 2 2 2
+ 20 21 1 1 1
+H003 (8) 20 1 1 1
+H005 (9) 20 1 1 1
+H010 (2) 22 1 1 1
+-------------------------------------------------------------------------
+Sum 22
+
+Tree length = 22
+Consistency index (CI) = 0.5909
+Homoplasy index (HI) = 0.4091
+CI excluding uninformative characters = 0.5500
+HI excluding uninformative characters = 0.4500
+Retention index (RI) = 0.7805
+Rescaled consistency index (RC) = 0.4612
+
+ /------------------ H002
+ |
+ | /--------- H008
+ /-------15-------14
+ | | \--------- H006
+ | |
+ /--------16 \------------------ H009
+ | |
+ | \--------------------------- H014
+ /-------18
+ | | /--------- H007
+ | | |
+ | \--------------------------17--------- H012
+ /-------19 |
+ | | \--------- H011
+ | |
+ | \---------------------------------------------- H013
+ /-------21
+ | +------------------------------------------------------- H001
+ | |
+ | | /--------- H003
+--------22 \--------------------------------------------20
+ | \--------- H005
+ |
+ \---------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_19 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_19 --> node_18 8 1 1.000 2 ==> 1
+ node_18 --> node_16 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_16 --> node_15 9 1 0.333 2 --> 1
+ 10 1 0.500 2 --> 1
+ 13 1 0.500 0 --> 1
+ node_15 --> node_14 11 1 0.500 2 ==> 1
+ node_14 --> H008 9 1 0.333 1 ==> 2
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_18 --> node_17 9 1 0.333 2 --> 1
+ 10 1 0.500 2 --> 1
+ node_17 --> H007 12 1 0.333 2 ==> 1
+ node_17 --> H012 11 1 0.500 2 ==> 1
+ node_17 --> H011 13 1 0.500 0 ==> 1
+ node_21 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_21 --> node_20 3 1 1.000 2 ==> 1
+ node_20 --> H003 4 1 1.000 2 ==> 1
+ node_20 --> H005 12 1 0.333 2 ==> 1
+ node_22 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 41:
+
+Branch lengths and linkages for tree #41
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 22 23 0 0 0
+ 20 22 2 2 2
+ 19 20 2 2 3
+ 17 19 3 3 3
+ 14 17 1 0 1
+H002 (1) 14 0 0 0
+H009 (11) 14 1 1 1
+ 16 17 0 0 1
+ 15 16 1 1 1
+H008 (4) 15 0 0 1
+H006 (12) 15 1 0 1
+H014 (5) 16 1 1 2
+ 18 19 1 0 1
+H007 (3) 18 1 1 1
+H012 (10) 18 1 1 1
+H011 (13) 18 1 1 1
+H013 (6) 20 0 0 0
+H001 (7) 22 2 2 2
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (9) 21 1 1 1
+H010 (2) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 22
+
+Tree length = 22
+Consistency index (CI) = 0.5909
+Homoplasy index (HI) = 0.4091
+CI excluding uninformative characters = 0.5500
+HI excluding uninformative characters = 0.4500
+Retention index (RI) = 0.7805
+Rescaled consistency index (RC) = 0.4612
+
+ /--------- H002
+ /----------------14
+ | \--------- H009
+ |
+ /--------17 /--------- H008
+ | | /-------15
+ | | | \--------- H006
+ | \-------16
+ /-------19 \------------------ H014
+ | |
+ | | /--------- H007
+ | | |
+ /-------20 \--------------------------18--------- H012
+ | | |
+ | | \--------- H011
+ | |
+ | \---------------------------------------------- H013
+ /-------22
+ | +------------------------------------------------------- H001
+ | |
+ | | /--------- H003
+--------23 \--------------------------------------------21
+ | \--------- H005
+ |
+ \---------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_20 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_20 --> node_19 8 1 1.000 2 ==> 1
+ 10 1 0.500 2 ==> 1
+ node_19 --> node_17 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ 13 1 0.500 0 ==> 1
+ node_17 --> node_14 9 1 0.333 2 --> 1
+ node_14 --> H009 12 1 0.333 2 ==> 1
+ node_16 --> node_15 11 1 0.500 2 ==> 1
+ node_15 --> H006 9 1 0.333 2 --> 1
+ node_16 --> H014 10 1 0.500 1 ==> 2
+ node_19 --> node_18 9 1 0.333 2 --> 1
+ node_18 --> H007 12 1 0.333 2 ==> 1
+ node_18 --> H012 11 1 0.500 2 ==> 1
+ node_18 --> H011 13 1 0.500 0 ==> 1
+ node_22 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 42:
+
+Branch lengths and linkages for tree #42
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 22 root 0 0 0
+ 21 22 0 0 0
+ 19 21 2 2 2
+ 18 19 2 2 3
+ 16 18 3 3 3
+ 14 16 1 0 1
+H002 (1) 14 0 0 0
+H009 (11) 14 1 1 1
+ 15 16 1 1 1
+H008 (4) 15 0 0 1
+H006 (12) 15 1 0 1
+H014 (5) 16 1 1 2
+ 17 18 1 0 1
+H007 (3) 17 1 1 1
+H012 (10) 17 1 1 1
+H011 (13) 17 1 1 1
+H013 (6) 19 0 0 0
+H001 (7) 21 2 2 2
+ 20 21 1 1 1
+H003 (8) 20 1 1 1
+H005 (9) 20 1 1 1
+H010 (2) 22 1 1 1
+-------------------------------------------------------------------------
+Sum 22
+
+Tree length = 22
+Consistency index (CI) = 0.5909
+Homoplasy index (HI) = 0.4091
+CI excluding uninformative characters = 0.5500
+HI excluding uninformative characters = 0.4500
+Retention index (RI) = 0.7805
+Rescaled consistency index (RC) = 0.4612
+
+ /---------- H002
+ /---------14
+ | \---------- H009
+ |
+ | /---------- H008
+ /--------16---------15
+ | | \---------- H006
+ | |
+ | \--------------------- H014
+ /---------18
+ | | /---------- H007
+ | | |
+ | \-------------------17---------- H012
+ /--------19 |
+ | | \---------- H011
+ | |
+ | \------------------------------------------ H013
+ /---------21
+ | +---------------------------------------------------- H001
+ | |
+ | | /---------- H003
+---------22 \----------------------------------------20
+ | \---------- H005
+ |
+ \--------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_19 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_19 --> node_18 8 1 1.000 2 ==> 1
+ 10 1 0.500 2 ==> 1
+ node_18 --> node_16 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ 13 1 0.500 0 ==> 1
+ node_16 --> node_14 9 1 0.333 2 --> 1
+ node_14 --> H009 12 1 0.333 2 ==> 1
+ node_16 --> node_15 11 1 0.500 2 ==> 1
+ node_15 --> H006 9 1 0.333 2 --> 1
+ node_16 --> H014 10 1 0.500 1 ==> 2
+ node_18 --> node_17 9 1 0.333 2 --> 1
+ node_17 --> H007 12 1 0.333 2 ==> 1
+ node_17 --> H012 11 1 0.500 2 ==> 1
+ node_17 --> H011 13 1 0.500 0 ==> 1
+ node_21 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_21 --> node_20 3 1 1.000 2 ==> 1
+ node_20 --> H003 4 1 1.000 2 ==> 1
+ node_20 --> H005 12 1 0.333 2 ==> 1
+ node_22 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 43:
+
+Branch lengths and linkages for tree #43
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 22 root 0 0 0
+ 21 22 0 0 0
+ 19 21 2 2 2
+ 18 19 1 1 3
+ 17 18 2 2 2
+ 15 17 3 1 3
+H002 (1) 15 0 0 0
+ 14 15 1 1 1
+H008 (4) 14 1 1 1
+H006 (12) 14 0 0 0
+H009 (11) 15 1 1 1
+ 16 17 0 0 2
+H007 (3) 16 1 1 1
+H012 (10) 16 1 1 1
+H011 (13) 16 1 1 1
+H014 (5) 18 2 0 2
+H013 (6) 19 0 0 0
+H001 (7) 21 2 2 2
+ 20 21 1 1 1
+H003 (8) 20 1 1 1
+H005 (9) 20 1 1 1
+H010 (2) 22 1 1 1
+-------------------------------------------------------------------------
+Sum 22
+
+Tree length = 22
+Consistency index (CI) = 0.5909
+Homoplasy index (HI) = 0.4091
+CI excluding uninformative characters = 0.5500
+HI excluding uninformative characters = 0.4500
+Retention index (RI) = 0.7805
+Rescaled consistency index (RC) = 0.4612
+
+ /------------------ H002
+ |
+ | /--------- H008
+ /-------15-------14
+ | | \--------- H006
+ | |
+ | \------------------ H009
+ /--------17
+ | | /--------- H007
+ | | |
+ | \----------------16--------- H012
+ /-------18 |
+ | | \--------- H011
+ | |
+ /-------19 \------------------------------------- H014
+ | |
+ | \---------------------------------------------- H013
+ |
+ /-------21------------------------------------------------------- H001
+ | |
+ | | /--------- H003
+--------22 \--------------------------------------------20
+ | \--------- H005
+ |
+ \---------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_19 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_19 --> node_18 8 1 1.000 2 ==> 1
+ node_18 --> node_17 9 1 0.500 2 ==> 1
+ 10 1 1.000 2 ==> 1
+ node_17 --> node_15 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ 13 1 0.500 0 ==> 1
+ node_15 --> node_14 11 1 0.500 2 ==> 1
+ node_14 --> H008 9 1 0.500 1 ==> 2
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_16 --> H007 12 1 0.333 2 ==> 1
+ node_16 --> H012 11 1 0.500 2 ==> 1
+ node_16 --> H011 13 1 0.500 0 ==> 1
+ node_18 --> H014 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ node_21 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_21 --> node_20 3 1 1.000 2 ==> 1
+ node_20 --> H003 4 1 1.000 2 ==> 1
+ node_20 --> H005 12 1 0.333 2 ==> 1
+ node_22 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 44:
+
+Branch lengths and linkages for tree #44
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 22 root 0 0 0
+ 21 22 0 0 0
+ 19 21 2 2 2
+ 18 19 1 1 1
+ 17 18 2 2 2
+ 16 17 1 1 1
+ 15 16 3 3 3
+ 14 15 1 1 1
+H002 (1) 14 0 0 0
+H009 (11) 14 1 1 1
+H008 (4) 15 1 1 1
+H006 (12) 15 0 0 0
+H012 (10) 16 0 0 0
+H007 (3) 17 1 1 1
+H011 (13) 17 1 1 1
+H014 (5) 18 2 2 2
+H013 (6) 19 0 0 0
+H001 (7) 21 2 2 2
+ 20 21 1 1 1
+H003 (8) 20 1 1 1
+H005 (9) 20 1 1 1
+H010 (2) 22 1 1 1
+-------------------------------------------------------------------------
+Sum 22
+
+Tree length = 22
+Consistency index (CI) = 0.5909
+Homoplasy index (HI) = 0.4091
+CI excluding uninformative characters = 0.5500
+HI excluding uninformative characters = 0.4500
+Retention index (RI) = 0.7805
+Rescaled consistency index (RC) = 0.4612
+
+ /-------- H002
+ /------14
+ | \-------- H009
+ |
+ /------15---------------- H008
+ | |
+ /------16 \---------------- H006
+ | |
+ | \------------------------ H012
+ /-------17
+ | +-------------------------------- H007
+ | |
+ /------18 \-------------------------------- H011
+ | |
+ /------19 \----------------------------------------- H014
+ | |
+ | \------------------------------------------------- H013
+ |
+ /------21--------------------------------------------------------- H001
+ | |
+ | | /-------- H003
+-------22 \-----------------------------------------------20
+ | \-------- H005
+ |
+ \----------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_19 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_19 --> node_18 8 1 1.000 2 ==> 1
+ node_18 --> node_17 9 1 0.500 2 ==> 1
+ 10 1 1.000 2 ==> 1
+ node_17 --> node_16 11 1 0.500 2 ==> 1
+ node_16 --> node_15 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ 13 1 0.500 0 ==> 1
+ node_15 --> node_14 11 1 0.500 1 ==> 2
+ node_14 --> H009 12 1 0.333 2 ==> 1
+ node_15 --> H008 9 1 0.500 1 ==> 2
+ node_17 --> H007 12 1 0.333 2 ==> 1
+ node_17 --> H011 13 1 0.500 0 ==> 1
+ node_18 --> H014 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_21 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_21 --> node_20 3 1 1.000 2 ==> 1
+ node_20 --> H003 4 1 1.000 2 ==> 1
+ node_20 --> H005 12 1 0.333 2 ==> 1
+ node_22 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 45:
+
+Branch lengths and linkages for tree #45
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 21 root 0 0 0
+ 20 21 0 0 0
+ 18 20 2 2 2
+ 17 18 3 3 4
+ 16 17 2 1 2
+ 15 16 1 1 1
+H002 (1) 15 0 0 0
+ 14 15 2 2 3
+H007 (3) 14 2 1 2
+H012 (10) 14 2 1 2
+H011 (13) 14 0 0 1
+H009 (11) 15 1 1 1
+H006 (12) 15 1 1 1
+H008 (4) 16 1 1 1
+H014 (5) 17 0 0 0
+H013 (6) 18 0 0 1
+H001 (7) 20 2 2 2
+ 19 20 1 1 1
+H003 (8) 19 1 1 1
+H005 (9) 19 1 1 1
+H010 (2) 21 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+ /------------------ H002
+ |
+ | /--------- H007
+ | |
+ +-------14--------- H012
+ /-------15 |
+ | | \--------- H011
+ | |
+ | +------------------ H009
+ /--------16 |
+ | | \------------------ H006
+ | |
+ /-------17 \--------------------------- H008
+ | |
+ /-------18 \------------------------------------- H014
+ | |
+ | \---------------------------------------------- H013
+ |
+ /-------20------------------------------------------------------- H001
+ | |
+ | | /--------- H003
+--------21 \--------------------------------------------19
+ | \--------- H005
+ |
+ \---------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_20 --> node_18 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_18 --> node_17 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_17 --> node_16 10 1 1.000 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_16 --> node_15 9 1 1.000 2 ==> 1
+ node_15 --> node_14 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_14 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_14 --> H012 11 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_15 --> H006 11 1 0.333 2 ==> 1
+ node_16 --> H008 11 1 0.333 2 ==> 1
+ node_20 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_20 --> node_19 3 1 1.000 2 ==> 1
+ node_19 --> H003 4 1 1.000 2 ==> 1
+ node_19 --> H005 12 1 0.333 2 ==> 1
+ node_21 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 46:
+
+Branch lengths and linkages for tree #46
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 22 23 0 0 0
+ 20 22 2 2 2
+ 19 20 3 3 4
+ 18 19 2 1 3
+ 17 18 1 1 1
+ 14 17 0 0 1
+H002 (1) 14 0 0 0
+H009 (11) 14 1 1 1
+ 16 17 2 2 3
+ 15 16 0 0 1
+H007 (3) 15 2 1 2
+H011 (13) 15 0 0 1
+H012 (10) 16 2 0 2
+H006 (12) 17 1 0 1
+H008 (4) 18 1 0 1
+H014 (5) 19 0 0 0
+H013 (6) 20 0 0 1
+H001 (7) 22 2 2 2
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (9) 21 1 1 1
+H010 (2) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+ /-------- H002
+ /--------------14
+ | \-------- H009
+ |
+ | /-------- H007
+ | /------15
+ /------17 | \-------- H011
+ | +------16
+ | | \---------------- H012
+ /-------18 |
+ | | \------------------------ H006
+ | |
+ /------19 \-------------------------------- H008
+ | |
+ /------20 \----------------------------------------- H014
+ | |
+ | \------------------------------------------------- H013
+ |
+ /------22--------------------------------------------------------- H001
+ | |
+ | | /-------- H003
+-------23 \-----------------------------------------------21
+ | \-------- H005
+ |
+ \----------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_20 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_20 --> node_19 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_19 --> node_18 10 1 1.000 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_18 --> node_17 9 1 1.000 2 ==> 1
+ node_14 --> H009 12 1 0.333 2 ==> 1
+ node_17 --> node_16 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_16 --> H012 11 1 0.333 2 --> 1
+ 13 1 0.333 1 --> 0
+ node_17 --> H006 11 1 0.333 2 --> 1
+ node_18 --> H008 11 1 0.333 2 --> 1
+ node_22 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 47:
+
+Branch lengths and linkages for tree #47
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 24 root 0 0 0
+ 23 24 0 0 0
+ 21 23 2 2 2
+ 20 21 3 3 4
+ 19 20 2 1 3
+ 18 19 1 1 1
+ 14 18 0 0 1
+H002 (1) 14 0 0 0
+H009 (11) 14 1 1 1
+ 17 18 0 0 1
+ 16 17 2 2 3
+ 15 16 0 0 1
+H007 (3) 15 2 1 2
+H011 (13) 15 0 0 1
+H012 (10) 16 2 0 2
+H006 (12) 17 1 0 1
+H008 (4) 19 1 0 1
+H014 (5) 20 0 0 0
+H013 (6) 21 0 0 1
+H001 (7) 23 2 2 2
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (9) 22 1 1 1
+H010 (2) 24 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+ /------- H002
+ /--------------------14
+ | \------- H009
+ |
+ | /------- H007
+ /-----18 /------15
+ | | | \------- H011
+ | | /-----16
+ | | | \--------------- H012
+ /------19 \-----17
+ | | \---------------------- H006
+ | |
+ /-----20 \------------------------------------ H008
+ | |
+ /-----21 \-------------------------------------------- H014
+ | |
+ | \--------------------------------------------------- H013
+ |
+ /------23---------------------------------------------------------- H001
+ | |
+ | | /------- H003
+------24 \-------------------------------------------------22
+ | \------- H005
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_21 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_21 --> node_20 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_20 --> node_19 10 1 1.000 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_19 --> node_18 9 1 1.000 2 ==> 1
+ node_14 --> H009 12 1 0.333 2 ==> 1
+ node_17 --> node_16 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_16 --> H012 11 1 0.333 2 --> 1
+ 13 1 0.333 1 --> 0
+ node_17 --> H006 11 1 0.333 2 --> 1
+ node_19 --> H008 11 1 0.333 2 --> 1
+ node_23 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+ node_24 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 48:
+
+Branch lengths and linkages for tree #48
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 22 23 0 0 0
+ 20 22 2 2 2
+ 19 20 1 1 3
+ 17 19 2 2 3
+ 16 17 2 0 3
+ 14 16 1 0 1
+H002 (1) 14 0 0 0
+H009 (11) 14 1 1 1
+ 15 16 1 1 1
+H008 (4) 15 0 0 1
+H006 (12) 15 1 0 1
+H014 (5) 17 0 0 2
+ 18 19 2 0 2
+H007 (3) 18 1 1 1
+H012 (10) 18 1 1 1
+H011 (13) 18 1 1 1
+H013 (6) 20 0 0 0
+H001 (7) 22 2 2 2
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (9) 21 1 1 1
+H010 (2) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 22
+
+Tree length = 22
+Consistency index (CI) = 0.5909
+Homoplasy index (HI) = 0.4091
+CI excluding uninformative characters = 0.5500
+HI excluding uninformative characters = 0.4500
+Retention index (RI) = 0.7805
+Rescaled consistency index (RC) = 0.4612
+
+ /--------- H002
+ /-------14
+ | \--------- H009
+ /-------16
+ | | /--------- H008
+ | \-------15
+ /--------17 \--------- H006
+ | |
+ | \--------------------------- H014
+ /-------19
+ | | /--------- H007
+ | | |
+ | \--------------------------18--------- H012
+ /-------20 |
+ | | \--------- H011
+ | |
+ | \---------------------------------------------- H013
+ /-------22
+ | +------------------------------------------------------- H001
+ | |
+ | | /--------- H003
+--------23 \--------------------------------------------21
+ | \--------- H005
+ |
+ \---------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_20 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_20 --> node_19 8 1 1.000 2 ==> 1
+ node_19 --> node_17 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_17 --> node_16 10 1 0.500 2 --> 1
+ 13 1 0.500 0 --> 1
+ node_16 --> node_14 9 1 0.333 2 --> 1
+ node_14 --> H009 12 1 0.333 2 ==> 1
+ node_16 --> node_15 11 1 0.500 2 ==> 1
+ node_15 --> H006 9 1 0.333 2 --> 1
+ node_19 --> node_18 9 1 0.333 2 --> 1
+ 10 1 0.500 2 --> 1
+ node_18 --> H007 12 1 0.333 2 ==> 1
+ node_18 --> H012 11 1 0.500 2 ==> 1
+ node_18 --> H011 13 1 0.500 0 ==> 1
+ node_22 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 49:
+
+Branch lengths and linkages for tree #49
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 21 root 0 0 0
+ 20 21 0 0 0
+ 18 20 2 2 2
+ 17 18 3 3 3
+ 16 17 1 1 1
+ 15 16 3 3 3
+ 14 15 1 1 1
+H002 (1) 14 0 0 0
+H014 (5) 14 2 2 2
+H009 (11) 14 1 1 1
+H008 (4) 15 1 1 1
+H006 (12) 15 0 0 0
+H012 (10) 16 0 0 0
+H007 (3) 17 1 1 1
+H011 (13) 17 1 1 1
+H013 (6) 18 0 0 0
+H001 (7) 20 2 2 2
+ 19 20 1 1 1
+H003 (8) 19 1 1 1
+H005 (9) 19 1 1 1
+H010 (2) 21 1 1 1
+-------------------------------------------------------------------------
+Sum 22
+
+Tree length = 22
+Consistency index (CI) = 0.5909
+Homoplasy index (HI) = 0.4091
+CI excluding uninformative characters = 0.5500
+HI excluding uninformative characters = 0.4500
+Retention index (RI) = 0.7805
+Rescaled consistency index (RC) = 0.4612
+
+ /--------- H002
+ |
+ /-------14--------- H014
+ | |
+ | \--------- H009
+ /-------15
+ | +------------------ H008
+ | |
+ /--------16 \------------------ H006
+ | |
+ | \--------------------------- H012
+ /-------17
+ | +------------------------------------- H007
+ | |
+ /-------18 \------------------------------------- H011
+ | |
+ | \---------------------------------------------- H013
+ |
+ /-------20------------------------------------------------------- H001
+ | |
+ | | /--------- H003
+--------21 \--------------------------------------------19
+ | \--------- H005
+ |
+ \---------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_20 --> node_18 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_18 --> node_17 8 1 1.000 2 ==> 1
+ 9 1 0.333 2 ==> 1
+ 10 1 0.500 2 ==> 1
+ node_17 --> node_16 11 1 0.500 2 ==> 1
+ node_16 --> node_15 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ 13 1 0.500 0 ==> 1
+ node_15 --> node_14 11 1 0.500 1 ==> 2
+ node_14 --> H014 9 1 0.333 1 ==> 2
+ 10 1 0.500 1 ==> 2
+ node_14 --> H009 12 1 0.333 2 ==> 1
+ node_15 --> H008 9 1 0.333 1 ==> 2
+ node_17 --> H007 12 1 0.333 2 ==> 1
+ node_17 --> H011 13 1 0.500 0 ==> 1
+ node_20 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_20 --> node_19 3 1 1.000 2 ==> 1
+ node_19 --> H003 4 1 1.000 2 ==> 1
+ node_19 --> H005 12 1 0.333 2 ==> 1
+ node_21 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 50:
+
+Branch lengths and linkages for tree #50
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 22 root 0 0 0
+ 21 22 0 0 0
+ 19 21 2 2 2
+ 18 19 3 3 4
+ 17 18 1 1 3
+ 15 17 1 0 1
+H002 (1) 15 0 0 0
+ 14 15 2 2 3
+H007 (3) 14 1 1 2
+H012 (10) 14 1 1 2
+H011 (13) 14 1 0 1
+H009 (11) 15 2 1 2
+ 16 17 2 1 2
+H008 (4) 16 0 0 1
+H006 (12) 16 1 0 1
+H014 (5) 18 0 0 0
+H013 (6) 19 0 0 1
+H001 (7) 21 2 2 2
+ 20 21 1 1 1
+H003 (8) 20 1 1 1
+H005 (9) 20 1 1 1
+H010 (2) 22 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+ /------------------ H002
+ |
+ | /--------- H007
+ | |
+ /-------15-------14--------- H012
+ | | |
+ | | \--------- H011
+ | |
+ /--------17 \------------------ H009
+ | |
+ | | /--------- H008
+ /-------18 \----------------16
+ | | \--------- H006
+ | |
+ /-------19 \------------------------------------- H014
+ | |
+ | \---------------------------------------------- H013
+ |
+ /-------21------------------------------------------------------- H001
+ | |
+ | | /--------- H003
+--------22 \--------------------------------------------20
+ | \--------- H005
+ |
+ \---------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_19 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_19 --> node_18 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_18 --> node_17 10 1 1.000 2 ==> 1
+ node_17 --> node_15 9 1 0.500 2 --> 1
+ node_15 --> node_14 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_14 --> H007 12 1 0.333 2 ==> 1
+ node_14 --> H012 11 1 0.500 2 ==> 1
+ node_14 --> H011 13 1 0.333 0 --> 1
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_17 --> node_16 11 1 0.500 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_16 --> H006 9 1 0.500 2 --> 1
+ node_21 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_21 --> node_20 3 1 1.000 2 ==> 1
+ node_20 --> H003 4 1 1.000 2 ==> 1
+ node_20 --> H005 12 1 0.333 2 ==> 1
+ node_22 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 51:
+
+Branch lengths and linkages for tree #51
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 22 root 0 0 0
+ 21 22 0 0 0
+ 19 21 2 2 3
+ 18 19 3 3 4
+ 17 18 1 1 3
+ 15 17 1 0 1
+H002 (1) 15 0 0 0
+ 14 15 2 2 3
+H007 (3) 14 1 1 2
+H012 (10) 14 1 1 2
+H011 (13) 14 1 0 1
+H009 (11) 15 2 1 2
+ 16 17 2 1 2
+H008 (4) 16 0 0 1
+H006 (12) 16 1 0 1
+H014 (5) 18 0 0 0
+H001 (7) 19 0 0 0
+H013 (6) 21 2 2 3
+ 20 21 1 1 1
+H003 (8) 20 1 1 1
+H005 (9) 20 1 1 1
+H010 (2) 22 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+ /------------------ H002
+ |
+ | /--------- H007
+ | |
+ /-------15-------14--------- H012
+ | | |
+ | | \--------- H011
+ | |
+ /--------17 \------------------ H009
+ | |
+ | | /--------- H008
+ /-------18 \----------------16
+ | | \--------- H006
+ | |
+ /-------19 \------------------------------------- H014
+ | |
+ | \---------------------------------------------- H001
+ |
+ /-------21------------------------------------------------------- H013
+ | |
+ | | /--------- H003
+--------22 \--------------------------------------------20
+ | \--------- H005
+ |
+ \---------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_19 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_19 --> node_18 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_18 --> node_17 10 1 1.000 2 ==> 1
+ node_17 --> node_15 9 1 0.500 2 --> 1
+ node_15 --> node_14 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_14 --> H007 12 1 0.333 2 ==> 1
+ node_14 --> H012 11 1 0.500 2 ==> 1
+ node_14 --> H011 13 1 0.333 0 --> 1
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_17 --> node_16 11 1 0.500 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_16 --> H006 9 1 0.500 2 --> 1
+ node_21 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ node_21 --> node_20 3 1 1.000 2 ==> 1
+ node_20 --> H003 4 1 1.000 2 ==> 1
+ node_20 --> H005 12 1 0.333 2 ==> 1
+ node_22 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 52:
+
+Branch lengths and linkages for tree #52
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 24 root 0 0 0
+ 23 24 0 0 0
+ 21 23 2 2 3
+ 20 21 3 3 4
+ 19 20 2 1 3
+ 18 19 1 1 1
+ 14 18 0 0 1
+H002 (1) 14 0 0 0
+H009 (11) 14 1 1 1
+ 17 18 0 0 1
+ 16 17 2 2 3
+ 15 16 0 0 1
+H007 (3) 15 2 1 2
+H011 (13) 15 0 0 1
+H012 (10) 16 2 0 2
+H006 (12) 17 1 0 1
+H008 (4) 19 1 0 1
+H014 (5) 20 0 0 0
+H001 (7) 21 0 0 0
+H013 (6) 23 2 2 3
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (9) 22 1 1 1
+H010 (2) 24 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+ /------- H002
+ /--------------------14
+ | \------- H009
+ |
+ | /------- H007
+ /-----18 /------15
+ | | | \------- H011
+ | | /-----16
+ | | | \--------------- H012
+ /------19 \-----17
+ | | \---------------------- H006
+ | |
+ /-----20 \------------------------------------ H008
+ | |
+ /-----21 \-------------------------------------------- H014
+ | |
+ | \--------------------------------------------------- H001
+ |
+ /------23---------------------------------------------------------- H013
+ | |
+ | | /------- H003
+------24 \-------------------------------------------------22
+ | \------- H005
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_21 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_21 --> node_20 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_20 --> node_19 10 1 1.000 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_19 --> node_18 9 1 1.000 2 ==> 1
+ node_14 --> H009 12 1 0.333 2 ==> 1
+ node_17 --> node_16 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_16 --> H012 11 1 0.333 2 --> 1
+ 13 1 0.333 1 --> 0
+ node_17 --> H006 11 1 0.333 2 --> 1
+ node_19 --> H008 11 1 0.333 2 --> 1
+ node_23 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+ node_24 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 53:
+
+Branch lengths and linkages for tree #53
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 22 23 0 0 0
+ 20 22 0 0 2
+ 19 20 2 2 3
+ 18 19 3 1 4
+ 17 18 1 1 3
+ 15 17 1 0 1
+H002 (1) 15 0 0 0
+ 14 15 2 2 3
+H007 (3) 14 1 1 2
+H012 (10) 14 1 1 2
+H011 (13) 14 1 0 1
+H009 (11) 15 2 1 2
+ 16 17 2 1 2
+H008 (4) 16 0 0 1
+H006 (12) 16 1 0 1
+H014 (5) 18 0 0 0
+H001 (7) 19 0 0 2
+H013 (6) 20 2 0 3
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (9) 21 1 1 1
+H010 (2) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+ /---------------- H002
+ |
+ | /-------- H007
+ | |
+ /------15------14-------- H012
+ | | |
+ | | \-------- H011
+ | |
+ /------17 \---------------- H009
+ | |
+ | | /-------- H008
+ /-------18 \--------------16
+ | | \-------- H006
+ | |
+ /------19 \-------------------------------- H014
+ | |
+ /------20 \----------------------------------------- H001
+ | |
+ | \------------------------------------------------- H013
+ /------22
+ | | /-------- H003
+ | \-----------------------------------------------21
+-------23 \-------- H005
+ |
+ \----------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_20 --> node_19 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_19 --> node_18 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_18 --> node_17 10 1 1.000 2 ==> 1
+ node_17 --> node_15 9 1 0.500 2 --> 1
+ node_15 --> node_14 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_14 --> H007 12 1 0.333 2 ==> 1
+ node_14 --> H012 11 1 0.500 2 ==> 1
+ node_14 --> H011 13 1 0.333 0 --> 1
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_17 --> node_16 11 1 0.500 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_16 --> H006 9 1 0.500 2 --> 1
+ node_20 --> H013 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 54:
+
+Branch lengths and linkages for tree #54
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 22 root 0 0 0
+ 21 22 0 0 0
+ 19 21 0 0 2
+ 18 19 2 2 3
+ 17 18 3 1 4
+ 16 17 2 2 3
+H002 (1) 16 0 0 0
+ 14 16 2 2 3
+H007 (3) 14 1 1 2
+H012 (10) 14 1 1 2
+H011 (13) 14 1 0 1
+ 15 16 2 1 2
+H008 (4) 15 1 1 1
+H006 (12) 15 0 0 0
+H009 (11) 16 2 1 2
+H014 (5) 17 0 0 0
+H001 (7) 18 0 0 2
+H013 (6) 19 2 0 3
+ 20 21 1 1 1
+H003 (8) 20 1 1 1
+H005 (9) 20 1 1 1
+H010 (2) 22 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+ /------------------ H002
+ |
+ | /--------- H007
+ | |
+ +-------14--------- H012
+ | |
+ /-------16 \--------- H011
+ | |
+ | | /--------- H008
+ | +-------15
+ /--------17 | \--------- H006
+ | | |
+ | | \------------------ H009
+ /-------18 |
+ | | \--------------------------- H014
+ | |
+ /-------19 \------------------------------------- H001
+ | |
+ | \---------------------------------------------- H013
+ /-------21
+ | | /--------- H003
+ | \--------------------------------------------20
+--------22 \--------- H005
+ |
+ \---------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_19 --> node_18 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_18 --> node_17 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_17 --> node_16 9 1 0.500 2 ==> 1
+ 10 1 1.000 2 ==> 1
+ node_16 --> node_14 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_14 --> H007 12 1 0.333 2 ==> 1
+ node_14 --> H012 11 1 0.500 2 ==> 1
+ node_14 --> H011 13 1 0.333 0 --> 1
+ node_16 --> node_15 11 1 0.500 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_15 --> H008 9 1 0.500 1 ==> 2
+ node_16 --> H009 12 1 0.333 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_19 --> H013 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ node_21 --> node_20 3 1 1.000 2 ==> 1
+ node_20 --> H003 4 1 1.000 2 ==> 1
+ node_20 --> H005 12 1 0.333 2 ==> 1
+ node_22 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 55:
+
+Branch lengths and linkages for tree #55
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 24 root 0 0 0
+ 23 24 0 0 0
+ 21 23 0 0 2
+ 20 21 2 2 3
+ 19 20 3 1 4
+ 18 19 2 1 2
+ 17 18 1 1 1
+H002 (1) 17 0 0 0
+ 16 17 0 0 1
+ 15 16 2 2 3
+H007 (3) 15 2 0 2
+ 14 15 0 0 1
+H012 (10) 14 2 1 2
+H011 (13) 14 0 0 1
+H009 (11) 16 1 0 1
+H006 (12) 17 1 1 1
+H008 (4) 18 1 1 1
+H014 (5) 19 0 0 0
+H001 (7) 20 0 0 2
+H013 (6) 21 2 0 3
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (9) 22 1 1 1
+H010 (2) 24 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+ /--------------------------- H002
+ |
+ | /------------- H007
+ | |
+ | /-----15 /------- H012
+ /----17 | \----14
+ | +-----16 \------- H011
+ | | |
+ | | \-------------------- H009
+ /-----18 |
+ | | \--------------------------- H006
+ | |
+ /----19 \--------------------------------- H008
+ | |
+ /-----20 \---------------------------------------- H014
+ | |
+ /-----21 \---------------------------------------------- H001
+ | |
+ | \----------------------------------------------------- H013
+ /----23
+ | | /------- H003
+ | \---------------------------------------------------22
+------24 \------- H005
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_20 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_20 --> node_19 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_19 --> node_18 10 1 1.000 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_18 --> node_17 9 1 1.000 2 ==> 1
+ node_16 --> node_15 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 --> 1
+ 13 1 0.333 1 --> 0
+ node_14 --> H012 11 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_16 --> H009 12 1 0.333 2 --> 1
+ node_17 --> H006 11 1 0.333 2 ==> 1
+ node_18 --> H008 11 1 0.333 2 ==> 1
+ node_21 --> H013 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+ node_24 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 56:
+
+Branch lengths and linkages for tree #56
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 24 root 0 0 0
+ 23 24 0 0 0
+ 21 23 0 0 2
+ 20 21 2 2 3
+ 19 20 3 1 4
+ 18 19 2 1 2
+ 17 18 1 1 1
+H002 (1) 17 0 0 0
+ 16 17 0 0 1
+ 15 16 2 2 3
+ 14 15 0 0 1
+H007 (3) 14 2 1 2
+H011 (13) 14 0 0 1
+H012 (10) 15 2 0 2
+H006 (12) 16 1 0 1
+H009 (11) 17 1 1 1
+H008 (4) 18 1 1 1
+H014 (5) 19 0 0 0
+H001 (7) 20 0 0 2
+H013 (6) 21 2 0 3
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (9) 22 1 1 1
+H010 (2) 24 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+ /--------------------------- H002
+ |
+ | /------- H007
+ | /----14
+ | | \------- H011
+ /----17 /-----15
+ | | | \------------- H012
+ | +-----16
+ | | \-------------------- H006
+ /-----18 |
+ | | \--------------------------- H009
+ | |
+ /----19 \--------------------------------- H008
+ | |
+ /-----20 \---------------------------------------- H014
+ | |
+ /-----21 \---------------------------------------------- H001
+ | |
+ | \----------------------------------------------------- H013
+ /----23
+ | | /------- H003
+ | \---------------------------------------------------22
+------24 \------- H005
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_20 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_20 --> node_19 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_19 --> node_18 10 1 1.000 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_18 --> node_17 9 1 1.000 2 ==> 1
+ node_16 --> node_15 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_14 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_15 --> H012 11 1 0.333 2 --> 1
+ 13 1 0.333 1 --> 0
+ node_16 --> H006 11 1 0.333 2 --> 1
+ node_17 --> H009 12 1 0.333 2 ==> 1
+ node_18 --> H008 11 1 0.333 2 ==> 1
+ node_21 --> H013 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+ node_24 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 57:
+
+Branch lengths and linkages for tree #57
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 21 root 0 0 0
+ 20 21 0 0 0
+ 18 20 2 2 3
+ 17 18 3 3 4
+ 16 17 2 1 2
+ 15 16 1 1 1
+H002 (1) 15 0 0 0
+ 14 15 2 2 3
+H007 (3) 14 2 1 2
+H012 (10) 14 2 1 2
+H011 (13) 14 0 0 1
+H009 (11) 15 1 1 1
+H006 (12) 15 1 1 1
+H008 (4) 16 1 1 1
+H014 (5) 17 0 0 0
+H001 (7) 18 0 0 0
+H013 (6) 20 2 2 3
+ 19 20 1 1 1
+H003 (8) 19 1 1 1
+H005 (9) 19 1 1 1
+H010 (2) 21 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+ /------------------ H002
+ |
+ | /--------- H007
+ | |
+ +-------14--------- H012
+ /-------15 |
+ | | \--------- H011
+ | |
+ | +------------------ H009
+ /--------16 |
+ | | \------------------ H006
+ | |
+ /-------17 \--------------------------- H008
+ | |
+ /-------18 \------------------------------------- H014
+ | |
+ | \---------------------------------------------- H001
+ |
+ /-------20------------------------------------------------------- H013
+ | |
+ | | /--------- H003
+--------21 \--------------------------------------------19
+ | \--------- H005
+ |
+ \---------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_20 --> node_18 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_18 --> node_17 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_17 --> node_16 10 1 1.000 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_16 --> node_15 9 1 1.000 2 ==> 1
+ node_15 --> node_14 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_14 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_14 --> H012 11 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_15 --> H006 11 1 0.333 2 ==> 1
+ node_16 --> H008 11 1 0.333 2 ==> 1
+ node_20 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ node_20 --> node_19 3 1 1.000 2 ==> 1
+ node_19 --> H003 4 1 1.000 2 ==> 1
+ node_19 --> H005 12 1 0.333 2 ==> 1
+ node_21 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 58:
+
+Branch lengths and linkages for tree #58
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 24 root 0 0 0
+ 23 24 0 0 0
+ 21 23 0 0 2
+ 20 21 2 2 2
+ 19 20 3 1 4
+ 18 19 2 2 3
+H002 (1) 18 0 0 0
+ 16 18 0 0 1
+ 15 16 2 2 3
+H007 (3) 15 1 0 2
+ 14 15 0 0 1
+H012 (10) 14 1 1 2
+H011 (13) 14 1 0 1
+H009 (11) 16 2 0 2
+ 17 18 2 1 2
+H008 (4) 17 1 1 1
+H006 (12) 17 0 0 0
+H014 (5) 19 0 0 0
+H013 (6) 20 0 0 3
+H001 (7) 21 2 0 2
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (9) 22 1 1 1
+H010 (2) 24 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+ /----------------------------- H002
+ |
+ | /--------------- H007
+ | |
+ | /-----15 /------- H012
+ | | \------14
+ /-----18-----16 \------- H011
+ | | |
+ | | \---------------------- H009
+ | |
+ /------19 | /------- H008
+ | | \--------------------17
+ | | \------- H006
+ /-----20 |
+ | | \------------------------------------ H014
+ | |
+ /-----21 \-------------------------------------------- H013
+ | |
+ | \--------------------------------------------------- H001
+ /------23
+ | | /------- H003
+ | \-------------------------------------------------22
+------24 \------- H005
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_20 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_20 --> node_19 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_19 --> node_18 9 1 0.500 2 ==> 1
+ 10 1 1.000 2 ==> 1
+ node_16 --> node_15 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 --> 1
+ node_14 --> H012 11 1 0.500 2 ==> 1
+ node_14 --> H011 13 1 0.333 0 --> 1
+ node_16 --> H009 12 1 0.333 2 --> 1
+ 13 1 0.333 0 --> 1
+ node_18 --> node_17 11 1 0.500 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_17 --> H008 9 1 0.500 1 ==> 2
+ node_21 --> H001 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+ node_24 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 59:
+
+Branch lengths and linkages for tree #59
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 25 root 0 0 0
+ 24 25 0 0 0
+ 22 24 0 0 2
+ 21 22 2 2 2
+ 20 21 3 1 4
+ 19 20 1 1 3
+ 17 19 1 0 1
+H002 (1) 17 0 0 0
+ 16 17 0 0 1
+ 15 16 2 2 3
+H007 (3) 15 1 0 2
+ 14 15 0 0 1
+H012 (10) 14 1 1 2
+H011 (13) 14 1 0 1
+H009 (11) 16 2 0 2
+ 18 19 2 1 2
+H008 (4) 18 0 0 1
+H006 (12) 18 1 0 1
+H014 (5) 20 0 0 0
+H013 (6) 21 0 0 3
+H001 (7) 22 2 0 2
+ 23 24 1 1 1
+H003 (8) 23 1 1 1
+H005 (9) 23 1 1 1
+H010 (2) 25 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+ /--------------------------- H002
+ |
+ | /------------- H007
+ /----17 |
+ | | /-----15 /------- H012
+ | | | \----14
+ | \-----16 \------- H011
+ /-----19 |
+ | | \-------------------- H009
+ | |
+ | | /------- H008
+ /----20 \------------------------18
+ | | \------- H006
+ | |
+ /-----21 \---------------------------------------- H014
+ | |
+ /-----22 \---------------------------------------------- H013
+ | |
+ | \----------------------------------------------------- H001
+ /----24
+ | | /------- H003
+ | \---------------------------------------------------23
+------25 \------- H005
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_21 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_21 --> node_20 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_20 --> node_19 10 1 1.000 2 ==> 1
+ node_19 --> node_17 9 1 0.500 2 --> 1
+ node_16 --> node_15 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 --> 1
+ node_14 --> H012 11 1 0.500 2 ==> 1
+ node_14 --> H011 13 1 0.333 0 --> 1
+ node_16 --> H009 12 1 0.333 2 --> 1
+ 13 1 0.333 0 --> 1
+ node_19 --> node_18 11 1 0.500 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_18 --> H006 9 1 0.500 2 --> 1
+ node_22 --> H001 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ node_24 --> node_23 3 1 1.000 2 ==> 1
+ node_23 --> H003 4 1 1.000 2 ==> 1
+ node_23 --> H005 12 1 0.333 2 ==> 1
+ node_25 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 60:
+
+Branch lengths and linkages for tree #60
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 22 23 0 0 0
+ 20 22 2 2 3
+ 19 20 3 3 4
+ 18 19 2 2 3
+H002 (1) 18 0 0 0
+ 16 18 0 0 1
+ 15 16 2 2 3
+H007 (3) 15 1 0 2
+ 14 15 0 0 1
+H012 (10) 14 1 1 2
+H011 (13) 14 1 0 1
+H009 (11) 16 2 0 2
+ 17 18 2 1 2
+H008 (4) 17 1 1 1
+H006 (12) 17 0 0 0
+H014 (5) 19 0 0 0
+H001 (7) 20 0 0 0
+H013 (6) 22 2 2 3
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (9) 21 1 1 1
+H010 (2) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+ /-------------------------------- H002
+ |
+ | /---------------- H007
+ | |
+ | /------15 /-------- H012
+ | | \------14
+ /-------18------16 \-------- H011
+ | | |
+ | | \------------------------ H009
+ | |
+ /------19 | /-------- H008
+ | | \----------------------17
+ | | \-------- H006
+ /------20 |
+ | | \----------------------------------------- H014
+ | |
+ | \------------------------------------------------- H001
+ /------22
+ | +--------------------------------------------------------- H013
+ | |
+ | | /-------- H003
+-------23 \-----------------------------------------------21
+ | \-------- H005
+ |
+ \----------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_20 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_20 --> node_19 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_19 --> node_18 9 1 0.500 2 ==> 1
+ 10 1 1.000 2 ==> 1
+ node_16 --> node_15 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 --> 1
+ node_14 --> H012 11 1 0.500 2 ==> 1
+ node_14 --> H011 13 1 0.333 0 --> 1
+ node_16 --> H009 12 1 0.333 2 --> 1
+ 13 1 0.333 0 --> 1
+ node_18 --> node_17 11 1 0.500 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_17 --> H008 9 1 0.500 1 ==> 2
+ node_22 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 61:
+
+Branch lengths and linkages for tree #61
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 24 root 0 0 0
+ 23 24 0 0 0
+ 21 23 0 0 2
+ 20 21 2 2 2
+ 19 20 3 1 4
+ 18 19 2 1 2
+ 17 18 1 1 1
+H002 (1) 17 0 0 0
+ 16 17 0 0 1
+ 15 16 2 2 3
+H007 (3) 15 2 0 2
+ 14 15 0 0 1
+H012 (10) 14 2 1 2
+H011 (13) 14 0 0 1
+H009 (11) 16 1 0 1
+H006 (12) 17 1 1 1
+H008 (4) 18 1 1 1
+H014 (5) 19 0 0 0
+H013 (6) 20 0 0 3
+H001 (7) 21 2 0 2
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (9) 22 1 1 1
+H010 (2) 24 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+ /--------------------------- H002
+ |
+ | /------------- H007
+ | |
+ | /-----15 /------- H012
+ /----17 | \----14
+ | +-----16 \------- H011
+ | | |
+ | | \-------------------- H009
+ /-----18 |
+ | | \--------------------------- H006
+ | |
+ /----19 \--------------------------------- H008
+ | |
+ /-----20 \---------------------------------------- H014
+ | |
+ /-----21 \---------------------------------------------- H013
+ | |
+ | \----------------------------------------------------- H001
+ /----23
+ | | /------- H003
+ | \---------------------------------------------------22
+------24 \------- H005
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_20 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_20 --> node_19 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_19 --> node_18 10 1 1.000 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_18 --> node_17 9 1 1.000 2 ==> 1
+ node_16 --> node_15 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 --> 1
+ 13 1 0.333 1 --> 0
+ node_14 --> H012 11 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_16 --> H009 12 1 0.333 2 --> 1
+ node_17 --> H006 11 1 0.333 2 ==> 1
+ node_18 --> H008 11 1 0.333 2 ==> 1
+ node_21 --> H001 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+ node_24 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 62:
+
+Branch lengths and linkages for tree #62
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 24 root 0 0 0
+ 23 24 0 0 0
+ 21 23 0 0 2
+ 20 21 2 2 2
+ 19 20 3 1 4
+ 18 19 2 2 3
+H002 (1) 18 0 0 0
+ 17 18 0 0 1
+ 15 17 2 2 3
+ 14 15 0 0 1
+H007 (3) 14 1 1 2
+H011 (13) 14 1 0 1
+H012 (10) 15 1 0 2
+ 16 17 2 0 2
+H008 (4) 16 1 1 1
+H006 (12) 16 0 0 0
+H009 (11) 18 2 1 2
+H014 (5) 19 0 0 0
+H013 (6) 20 0 0 3
+H001 (7) 21 2 0 2
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (9) 22 1 1 1
+H010 (2) 24 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+ /----------------------------- H002
+ |
+ | /------- H007
+ | /------14
+ | | \------- H011
+ | /-----15
+ /-----18 | \--------------- H012
+ | +-----17
+ | | | /------- H008
+ | | \-------------16
+ /------19 | \------- H006
+ | | |
+ | | \----------------------------- H009
+ /-----20 |
+ | | \------------------------------------ H014
+ | |
+ /-----21 \-------------------------------------------- H013
+ | |
+ | \--------------------------------------------------- H001
+ /------23
+ | | /------- H003
+ | \-------------------------------------------------22
+------24 \------- H005
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_20 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_20 --> node_19 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_19 --> node_18 9 1 0.500 2 ==> 1
+ 10 1 1.000 2 ==> 1
+ node_17 --> node_15 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_14 --> H007 12 1 0.333 2 ==> 1
+ node_14 --> H011 13 1 0.333 0 --> 1
+ node_15 --> H012 11 1 0.500 2 --> 1
+ node_17 --> node_16 11 1 0.500 2 --> 1
+ 13 1 0.333 0 --> 1
+ node_16 --> H008 9 1 0.500 1 ==> 2
+ node_18 --> H009 12 1 0.333 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_21 --> H001 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+ node_24 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 63:
+
+Branch lengths and linkages for tree #63
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 22 23 0 0 0
+ 20 22 0 0 2
+ 19 20 2 2 2
+ 18 19 3 1 4
+ 17 18 3 2 3
+H002 (1) 17 0 0 0
+ 16 17 1 1 1
+ 15 16 2 2 3
+ 14 15 1 1 1
+H007 (3) 14 2 1 2
+H011 (13) 14 0 0 1
+H012 (10) 15 1 0 1
+H008 (4) 16 1 1 1
+H006 (12) 16 0 0 0
+H009 (11) 17 1 1 1
+H014 (5) 18 0 0 0
+H013 (6) 19 0 0 3
+H001 (7) 20 2 0 2
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (9) 21 1 1 1
+H010 (2) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+ /----------------------------- H002
+ |
+ | /------- H007
+ | /------14
+ | | \------- H011
+ | /-----15
+ /-----17 | \--------------- H012
+ | | |
+ | +-----16---------------------- H008
+ | | |
+ /------18 | \---------------------- H006
+ | | |
+ | | \----------------------------- H009
+ /-----19 |
+ | | \------------------------------------ H014
+ | |
+ /-----20 \-------------------------------------------- H013
+ | |
+ | \--------------------------------------------------- H001
+ /------22
+ | | /------- H003
+ | \-------------------------------------------------21
+------23 \------- H005
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_20 --> node_19 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_19 --> node_18 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_18 --> node_17 9 1 0.500 2 ==> 1
+ 10 1 1.000 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_17 --> node_16 11 1 0.500 2 ==> 1
+ node_16 --> node_15 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_15 --> node_14 11 1 0.500 1 ==> 2
+ node_14 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_15 --> H012 13 1 0.333 1 --> 0
+ node_16 --> H008 9 1 0.500 1 ==> 2
+ node_17 --> H009 12 1 0.333 2 ==> 1
+ node_20 --> H001 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 64:
+
+Branch lengths and linkages for tree #64
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 24 root 0 0 0
+ 23 24 0 0 0
+ 21 23 0 0 2
+ 20 21 2 2 3
+ 19 20 3 1 4
+ 18 19 2 2 3
+H002 (1) 18 0 0 0
+ 16 18 0 0 1
+ 15 16 2 2 3
+H007 (3) 15 1 0 2
+ 14 15 0 0 1
+H012 (10) 14 1 1 2
+H011 (13) 14 1 0 1
+H009 (11) 16 2 0 2
+ 17 18 2 1 2
+H008 (4) 17 1 1 1
+H006 (12) 17 0 0 0
+H014 (5) 19 0 0 0
+H001 (7) 20 0 0 2
+H013 (6) 21 2 0 3
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (9) 22 1 1 1
+H010 (2) 24 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+ /----------------------------- H002
+ |
+ | /--------------- H007
+ | |
+ | /-----15 /------- H012
+ | | \------14
+ /-----18-----16 \------- H011
+ | | |
+ | | \---------------------- H009
+ | |
+ /------19 | /------- H008
+ | | \--------------------17
+ | | \------- H006
+ /-----20 |
+ | | \------------------------------------ H014
+ | |
+ /-----21 \-------------------------------------------- H001
+ | |
+ | \--------------------------------------------------- H013
+ /------23
+ | | /------- H003
+ | \-------------------------------------------------22
+------24 \------- H005
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_20 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_20 --> node_19 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_19 --> node_18 9 1 0.500 2 ==> 1
+ 10 1 1.000 2 ==> 1
+ node_16 --> node_15 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 --> 1
+ node_14 --> H012 11 1 0.500 2 ==> 1
+ node_14 --> H011 13 1 0.333 0 --> 1
+ node_16 --> H009 12 1 0.333 2 --> 1
+ 13 1 0.333 0 --> 1
+ node_18 --> node_17 11 1 0.500 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_17 --> H008 9 1 0.500 1 ==> 2
+ node_21 --> H013 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+ node_24 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 65:
+
+Branch lengths and linkages for tree #65
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 22 23 0 0 0
+ 20 22 2 2 2
+ 19 20 3 3 4
+ 18 19 2 2 3
+H002 (1) 18 0 0 0
+ 16 18 0 0 1
+ 15 16 2 2 3
+H007 (3) 15 1 0 2
+ 14 15 0 0 1
+H012 (10) 14 1 1 2
+H011 (13) 14 1 0 1
+H009 (11) 16 2 0 2
+ 17 18 2 1 2
+H008 (4) 17 1 1 1
+H006 (12) 17 0 0 0
+H014 (5) 19 0 0 0
+H013 (6) 20 0 0 1
+H001 (7) 22 2 2 2
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (9) 21 1 1 1
+H010 (2) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+ /-------------------------------- H002
+ |
+ | /---------------- H007
+ | |
+ | /------15 /-------- H012
+ | | \------14
+ /-------18------16 \-------- H011
+ | | |
+ | | \------------------------ H009
+ | |
+ /------19 | /-------- H008
+ | | \----------------------17
+ | | \-------- H006
+ /------20 |
+ | | \----------------------------------------- H014
+ | |
+ | \------------------------------------------------- H013
+ /------22
+ | +--------------------------------------------------------- H001
+ | |
+ | | /-------- H003
+-------23 \-----------------------------------------------21
+ | \-------- H005
+ |
+ \----------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_20 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_20 --> node_19 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_19 --> node_18 9 1 0.500 2 ==> 1
+ 10 1 1.000 2 ==> 1
+ node_16 --> node_15 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 --> 1
+ node_14 --> H012 11 1 0.500 2 ==> 1
+ node_14 --> H011 13 1 0.333 0 --> 1
+ node_16 --> H009 12 1 0.333 2 --> 1
+ 13 1 0.333 0 --> 1
+ node_18 --> node_17 11 1 0.500 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_17 --> H008 9 1 0.500 1 ==> 2
+ node_22 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 66:
+
+Branch lengths and linkages for tree #66
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 21 root 0 0 0
+ 20 21 0 0 0
+ 18 20 2 2 3
+ 17 18 3 3 4
+ 16 17 2 2 3
+H002 (1) 16 0 0 0
+ 14 16 2 2 3
+H007 (3) 14 1 1 2
+H012 (10) 14 1 1 2
+H011 (13) 14 1 0 1
+ 15 16 2 1 2
+H008 (4) 15 1 1 1
+H006 (12) 15 0 0 0
+H009 (11) 16 2 1 2
+H014 (5) 17 0 0 0
+H001 (7) 18 0 0 0
+H013 (6) 20 2 2 3
+ 19 20 1 1 1
+H003 (8) 19 1 1 1
+H005 (9) 19 1 1 1
+H010 (2) 21 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+ /--------------------- H002
+ |
+ | /---------- H007
+ | |
+ +---------14---------- H012
+ | |
+ /--------16 \---------- H011
+ | |
+ | | /---------- H008
+ | +---------15
+ /---------17 | \---------- H006
+ | | |
+ | | \--------------------- H009
+ /--------18 |
+ | | \------------------------------- H014
+ | |
+ | \------------------------------------------ H001
+ /---------20
+ | +---------------------------------------------------- H013
+ | |
+ | | /---------- H003
+---------21 \----------------------------------------19
+ | \---------- H005
+ |
+ \--------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_20 --> node_18 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_18 --> node_17 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_17 --> node_16 9 1 0.500 2 ==> 1
+ 10 1 1.000 2 ==> 1
+ node_16 --> node_14 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_14 --> H007 12 1 0.333 2 ==> 1
+ node_14 --> H012 11 1 0.500 2 ==> 1
+ node_14 --> H011 13 1 0.333 0 --> 1
+ node_16 --> node_15 11 1 0.500 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_15 --> H008 9 1 0.500 1 ==> 2
+ node_16 --> H009 12 1 0.333 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_20 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ node_20 --> node_19 3 1 1.000 2 ==> 1
+ node_19 --> H003 4 1 1.000 2 ==> 1
+ node_19 --> H005 12 1 0.333 2 ==> 1
+ node_21 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 67:
+
+Branch lengths and linkages for tree #67
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 22 23 0 0 0
+ 20 22 2 2 2
+ 19 20 3 3 4
+ 18 19 2 2 3
+H002 (1) 18 0 0 0
+ 17 18 0 0 1
+ 15 17 2 2 3
+ 14 15 0 0 1
+H007 (3) 14 1 1 2
+H011 (13) 14 1 0 1
+H012 (10) 15 1 0 2
+ 16 17 2 0 2
+H008 (4) 16 1 1 1
+H006 (12) 16 0 0 0
+H009 (11) 18 2 1 2
+H014 (5) 19 0 0 0
+H013 (6) 20 0 0 1
+H001 (7) 22 2 2 2
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (9) 21 1 1 1
+H010 (2) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+ /-------------------------------- H002
+ |
+ | /-------- H007
+ | /------14
+ | | \-------- H011
+ | /------15
+ /-------18 | \---------------- H012
+ | +------17
+ | | | /-------- H008
+ | | \--------------16
+ /------19 | \-------- H006
+ | | |
+ | | \-------------------------------- H009
+ /------20 |
+ | | \----------------------------------------- H014
+ | |
+ | \------------------------------------------------- H013
+ /------22
+ | +--------------------------------------------------------- H001
+ | |
+ | | /-------- H003
+-------23 \-----------------------------------------------21
+ | \-------- H005
+ |
+ \----------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_20 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_20 --> node_19 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_19 --> node_18 9 1 0.500 2 ==> 1
+ 10 1 1.000 2 ==> 1
+ node_17 --> node_15 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_14 --> H007 12 1 0.333 2 ==> 1
+ node_14 --> H011 13 1 0.333 0 --> 1
+ node_15 --> H012 11 1 0.500 2 --> 1
+ node_17 --> node_16 11 1 0.500 2 --> 1
+ 13 1 0.333 0 --> 1
+ node_16 --> H008 9 1 0.500 1 ==> 2
+ node_18 --> H009 12 1 0.333 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_22 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 68:
+
+Branch lengths and linkages for tree #68
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 24 root 0 0 0
+ 23 24 0 0 0
+ 21 23 2 2 2
+ 20 21 3 3 4
+ 19 20 2 1 3
+ 14 19 1 0 1
+H002 (1) 14 0 0 0
+H009 (11) 14 1 1 1
+ 18 19 1 1 1
+ 17 18 1 0 1
+ 16 17 2 2 3
+ 15 16 1 1 1
+H007 (3) 15 2 1 2
+H011 (13) 15 0 0 1
+H012 (10) 16 1 0 1
+H006 (12) 17 0 0 0
+H008 (4) 18 0 0 1
+H014 (5) 20 0 0 0
+H013 (6) 21 0 0 1
+H001 (7) 23 2 2 2
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (9) 22 1 1 1
+H010 (2) 24 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+ /------- H002
+ /---------------------------14
+ | \------- H009
+ |
+ | /------- H007
+ | /------15
+ /------19 | \------- H011
+ | | /-----16
+ | | | \--------------- H012
+ | | /-----17
+ /-----20 | | \---------------------- H006
+ | | \-----18
+ | | \----------------------------- H008
+ /-----21 |
+ | | \-------------------------------------------- H014
+ | |
+ | \--------------------------------------------------- H013
+ /------23
+ | +---------------------------------------------------------- H001
+ | |
+ | | /------- H003
+------24 \-------------------------------------------------22
+ | \------- H005
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_21 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_21 --> node_20 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_20 --> node_19 10 1 1.000 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_19 --> node_14 9 1 0.500 2 --> 1
+ node_14 --> H009 12 1 0.333 2 ==> 1
+ node_19 --> node_18 11 1 0.500 2 ==> 1
+ node_18 --> node_17 9 1 0.500 2 --> 1
+ node_17 --> node_16 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_16 --> node_15 11 1 0.500 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_16 --> H012 13 1 0.333 1 --> 0
+ node_23 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+ node_24 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 69:
+
+Branch lengths and linkages for tree #69
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 22 root 0 0 0
+ 21 22 0 0 0
+ 19 21 2 2 2
+ 18 19 3 3 4
+ 17 18 3 2 3
+H002 (1) 17 0 0 0
+ 16 17 1 1 1
+ 15 16 2 2 3
+ 14 15 1 1 1
+H007 (3) 14 2 1 2
+H011 (13) 14 0 0 1
+H012 (10) 15 1 0 1
+H008 (4) 16 1 1 1
+H006 (12) 16 0 0 0
+H009 (11) 17 1 1 1
+H014 (5) 18 0 0 0
+H013 (6) 19 0 0 1
+H001 (7) 21 2 2 2
+ 20 21 1 1 1
+H003 (8) 20 1 1 1
+H005 (9) 20 1 1 1
+H010 (2) 22 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+ /-------------------------------- H002
+ |
+ | /-------- H007
+ | /------14
+ | | \-------- H011
+ | /------15
+ /-------17 | \---------------- H012
+ | | |
+ | +------16------------------------ H008
+ | | |
+ /------18 | \------------------------ H006
+ | | |
+ | | \-------------------------------- H009
+ /------19 |
+ | | \----------------------------------------- H014
+ | |
+ | \------------------------------------------------- H013
+ /------21
+ | +--------------------------------------------------------- H001
+ | |
+ | | /-------- H003
+-------22 \-----------------------------------------------20
+ | \-------- H005
+ |
+ \----------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_19 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_19 --> node_18 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_18 --> node_17 9 1 0.500 2 ==> 1
+ 10 1 1.000 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_17 --> node_16 11 1 0.500 2 ==> 1
+ node_16 --> node_15 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_15 --> node_14 11 1 0.500 1 ==> 2
+ node_14 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_15 --> H012 13 1 0.333 1 --> 0
+ node_16 --> H008 9 1 0.500 1 ==> 2
+ node_17 --> H009 12 1 0.333 2 ==> 1
+ node_21 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_21 --> node_20 3 1 1.000 2 ==> 1
+ node_20 --> H003 4 1 1.000 2 ==> 1
+ node_20 --> H005 12 1 0.333 2 ==> 1
+ node_22 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 70:
+
+Branch lengths and linkages for tree #70
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 21 root 0 0 0
+ 20 21 0 0 0
+ 18 20 2 2 2
+ 17 18 3 3 4
+ 16 17 2 2 3
+H002 (1) 16 0 0 0
+ 14 16 2 2 3
+H007 (3) 14 1 1 2
+H012 (10) 14 1 1 2
+H011 (13) 14 1 0 1
+ 15 16 2 1 2
+H008 (4) 15 1 1 1
+H006 (12) 15 0 0 0
+H009 (11) 16 2 1 2
+H014 (5) 17 0 0 0
+H013 (6) 18 0 0 1
+H001 (7) 20 2 2 2
+ 19 20 1 1 1
+H003 (8) 19 1 1 1
+H005 (9) 19 1 1 1
+H010 (2) 21 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+ /--------------------- H002
+ |
+ | /---------- H007
+ | |
+ +---------14---------- H012
+ | |
+ /--------16 \---------- H011
+ | |
+ | | /---------- H008
+ | +---------15
+ /---------17 | \---------- H006
+ | | |
+ | | \--------------------- H009
+ /--------18 |
+ | | \------------------------------- H014
+ | |
+ | \------------------------------------------ H013
+ /---------20
+ | +---------------------------------------------------- H001
+ | |
+ | | /---------- H003
+---------21 \----------------------------------------19
+ | \---------- H005
+ |
+ \--------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_20 --> node_18 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_18 --> node_17 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_17 --> node_16 9 1 0.500 2 ==> 1
+ 10 1 1.000 2 ==> 1
+ node_16 --> node_14 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_14 --> H007 12 1 0.333 2 ==> 1
+ node_14 --> H012 11 1 0.500 2 ==> 1
+ node_14 --> H011 13 1 0.333 0 --> 1
+ node_16 --> node_15 11 1 0.500 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_15 --> H008 9 1 0.500 1 ==> 2
+ node_16 --> H009 12 1 0.333 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_20 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_20 --> node_19 3 1 1.000 2 ==> 1
+ node_19 --> H003 4 1 1.000 2 ==> 1
+ node_19 --> H005 12 1 0.333 2 ==> 1
+ node_21 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 71:
+
+Branch lengths and linkages for tree #71
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 24 root 0 0 0
+ 23 24 0 0 0
+ 21 23 2 2 2
+ 20 21 3 3 4
+ 19 20 1 1 3
+ 17 19 1 0 1
+H002 (1) 17 0 0 0
+ 16 17 0 0 1
+ 15 16 2 2 3
+H007 (3) 15 1 0 2
+ 14 15 0 0 1
+H012 (10) 14 1 1 2
+H011 (13) 14 1 0 1
+H009 (11) 16 2 0 2
+ 18 19 2 1 2
+H008 (4) 18 0 0 1
+H006 (12) 18 1 0 1
+H014 (5) 20 0 0 0
+H013 (6) 21 0 0 1
+H001 (7) 23 2 2 2
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (9) 22 1 1 1
+H010 (2) 24 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+ /----------------------------- H002
+ |
+ | /--------------- H007
+ /-----17 |
+ | | /-----15 /------- H012
+ | | | \------14
+ | \-----16 \------- H011
+ /------19 |
+ | | \---------------------- H009
+ | |
+ | | /------- H008
+ /-----20 \---------------------------18
+ | | \------- H006
+ | |
+ /-----21 \-------------------------------------------- H014
+ | |
+ | \--------------------------------------------------- H013
+ |
+ /------23---------------------------------------------------------- H001
+ | |
+ | | /------- H003
+------24 \-------------------------------------------------22
+ | \------- H005
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_21 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_21 --> node_20 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_20 --> node_19 10 1 1.000 2 ==> 1
+ node_19 --> node_17 9 1 0.500 2 --> 1
+ node_16 --> node_15 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 --> 1
+ node_14 --> H012 11 1 0.500 2 ==> 1
+ node_14 --> H011 13 1 0.333 0 --> 1
+ node_16 --> H009 12 1 0.333 2 --> 1
+ 13 1 0.333 0 --> 1
+ node_19 --> node_18 11 1 0.500 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_18 --> H006 9 1 0.500 2 --> 1
+ node_23 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+ node_24 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 72:
+
+Branch lengths and linkages for tree #72
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 22 23 0 0 0
+ 20 22 2 2 3
+ 19 20 3 3 4
+ 18 19 2 1 3
+ 17 18 1 1 1
+ 14 17 0 0 1
+H002 (1) 14 0 0 0
+H009 (11) 14 1 1 1
+ 16 17 2 2 3
+ 15 16 0 0 1
+H007 (3) 15 2 1 2
+H011 (13) 15 0 0 1
+H012 (10) 16 2 0 2
+H006 (12) 17 1 0 1
+H008 (4) 18 1 0 1
+H014 (5) 19 0 0 0
+H001 (7) 20 0 0 0
+H013 (6) 22 2 2 3
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (9) 21 1 1 1
+H010 (2) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+ /-------- H002
+ /--------------14
+ | \-------- H009
+ |
+ | /-------- H007
+ | /------15
+ /------17 | \-------- H011
+ | +------16
+ | | \---------------- H012
+ /-------18 |
+ | | \------------------------ H006
+ | |
+ /------19 \-------------------------------- H008
+ | |
+ /------20 \----------------------------------------- H014
+ | |
+ | \------------------------------------------------- H001
+ |
+ /------22--------------------------------------------------------- H013
+ | |
+ | | /-------- H003
+-------23 \-----------------------------------------------21
+ | \-------- H005
+ |
+ \----------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_20 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_20 --> node_19 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_19 --> node_18 10 1 1.000 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_18 --> node_17 9 1 1.000 2 ==> 1
+ node_14 --> H009 12 1 0.333 2 ==> 1
+ node_17 --> node_16 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_16 --> H012 11 1 0.333 2 --> 1
+ 13 1 0.333 1 --> 0
+ node_17 --> H006 11 1 0.333 2 --> 1
+ node_18 --> H008 11 1 0.333 2 --> 1
+ node_22 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 73:
+
+Branch lengths and linkages for tree #73
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 25 root 0 0 0
+ 24 25 0 0 0
+ 22 24 0 0 2
+ 21 22 2 2 2
+ 20 21 3 1 4
+ 19 20 2 1 3
+ 14 19 1 0 1
+H002 (1) 14 0 0 0
+H009 (11) 14 1 1 1
+ 18 19 1 1 1
+ 17 18 1 0 1
+ 16 17 2 2 3
+ 15 16 1 1 1
+H007 (3) 15 2 1 2
+H011 (13) 15 0 0 1
+H012 (10) 16 1 0 1
+H006 (12) 17 0 0 0
+H008 (4) 18 0 0 1
+H014 (5) 20 0 0 0
+H013 (6) 21 0 0 3
+H001 (7) 22 2 0 2
+ 23 24 1 1 1
+H003 (8) 23 1 1 1
+H005 (9) 23 1 1 1
+H010 (2) 25 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+ /------- H002
+ /------------------------14
+ | \------- H009
+ |
+ | /------- H007
+ | /----15
+ /-----19 | \------- H011
+ | | /-----16
+ | | | \------------- H012
+ | | /-----17
+ /----20 | | \-------------------- H006
+ | | \----18
+ | | \--------------------------- H008
+ /-----21 |
+ | | \---------------------------------------- H014
+ | |
+ /-----22 \---------------------------------------------- H013
+ | |
+ | \----------------------------------------------------- H001
+ /----24
+ | | /------- H003
+ | \---------------------------------------------------23
+------25 \------- H005
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_21 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_21 --> node_20 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_20 --> node_19 10 1 1.000 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_19 --> node_14 9 1 0.500 2 --> 1
+ node_14 --> H009 12 1 0.333 2 ==> 1
+ node_19 --> node_18 11 1 0.500 2 ==> 1
+ node_18 --> node_17 9 1 0.500 2 --> 1
+ node_17 --> node_16 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_16 --> node_15 11 1 0.500 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_16 --> H012 13 1 0.333 1 --> 0
+ node_22 --> H001 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ node_24 --> node_23 3 1 1.000 2 ==> 1
+ node_23 --> H003 4 1 1.000 2 ==> 1
+ node_23 --> H005 12 1 0.333 2 ==> 1
+ node_25 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 74:
+
+Branch lengths and linkages for tree #74
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 25 root 0 0 0
+ 24 25 0 0 0
+ 22 24 0 0 2
+ 21 22 2 2 3
+ 20 21 3 1 4
+ 19 20 2 1 3
+ 18 19 1 1 1
+ 17 18 0 0 1
+H002 (1) 17 0 0 0
+ 16 17 0 0 1
+ 15 16 2 2 3
+H007 (3) 15 2 0 2
+ 14 15 0 0 1
+H012 (10) 14 2 1 2
+H011 (13) 14 0 0 1
+H009 (11) 16 1 0 1
+H006 (12) 18 1 0 1
+H008 (4) 19 1 0 1
+H014 (5) 20 0 0 0
+H001 (7) 21 0 0 2
+H013 (6) 22 2 0 3
+ 23 24 1 1 1
+H003 (8) 23 1 1 1
+H005 (9) 23 1 1 1
+H010 (2) 25 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+ /------------------------ H002
+ |
+ | /------------ H007
+ /----17 |
+ | | /----15 /------ H012
+ | | | \----14
+ | \----16 \------ H011
+ /----18 |
+ | | \------------------ H009
+ | |
+ /-----19 \------------------------------ H006
+ | |
+ /----20 \------------------------------------ H008
+ | |
+ /----21 \------------------------------------------- H014
+ | |
+ /----22 \------------------------------------------------- H001
+ | |
+ | \------------------------------------------------------- H013
+ /----24
+ | | /------ H003
+ | \-----------------------------------------------------23
+-----25 \------ H005
+ |
+ \------------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_21 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_21 --> node_20 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_20 --> node_19 10 1 1.000 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_19 --> node_18 9 1 1.000 2 ==> 1
+ node_16 --> node_15 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 --> 1
+ 13 1 0.333 1 --> 0
+ node_14 --> H012 11 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_16 --> H009 12 1 0.333 2 --> 1
+ node_18 --> H006 11 1 0.333 2 --> 1
+ node_19 --> H008 11 1 0.333 2 --> 1
+ node_22 --> H013 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ node_24 --> node_23 3 1 1.000 2 ==> 1
+ node_23 --> H003 4 1 1.000 2 ==> 1
+ node_23 --> H005 12 1 0.333 2 ==> 1
+ node_25 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 75:
+
+Branch lengths and linkages for tree #75
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 25 root 0 0 0
+ 24 25 0 0 0
+ 22 24 0 0 2
+ 21 22 2 2 3
+ 20 21 3 1 4
+ 19 20 2 1 3
+ 18 19 1 1 1
+ 17 18 0 0 1
+ 14 17 0 0 1
+H002 (1) 14 0 0 0
+H009 (11) 14 1 1 1
+ 16 17 2 2 3
+ 15 16 0 0 1
+H007 (3) 15 2 1 2
+H011 (13) 15 0 0 1
+H012 (10) 16 2 0 2
+H006 (12) 18 1 0 1
+H008 (4) 19 1 0 1
+H014 (5) 20 0 0 0
+H001 (7) 21 0 0 2
+H013 (6) 22 2 0 3
+ 23 24 1 1 1
+H003 (8) 23 1 1 1
+H005 (9) 23 1 1 1
+H010 (2) 25 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+ /------- H002
+ /-----------14
+ | \------- H009
+ |
+ /-----17 /------- H007
+ | | /----15
+ | | | \------- H011
+ /----18 \-----16
+ | | \------------- H012
+ | |
+ /-----19 \--------------------------- H006
+ | |
+ /----20 \--------------------------------- H008
+ | |
+ /-----21 \---------------------------------------- H014
+ | |
+ /-----22 \---------------------------------------------- H001
+ | |
+ | \----------------------------------------------------- H013
+ /----24
+ | | /------- H003
+ | \---------------------------------------------------23
+------25 \------- H005
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_21 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_21 --> node_20 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_20 --> node_19 10 1 1.000 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_19 --> node_18 9 1 1.000 2 ==> 1
+ node_14 --> H009 12 1 0.333 2 ==> 1
+ node_17 --> node_16 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_16 --> H012 11 1 0.333 2 --> 1
+ 13 1 0.333 1 --> 0
+ node_18 --> H006 11 1 0.333 2 --> 1
+ node_19 --> H008 11 1 0.333 2 --> 1
+ node_22 --> H013 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ node_24 --> node_23 3 1 1.000 2 ==> 1
+ node_23 --> H003 4 1 1.000 2 ==> 1
+ node_23 --> H005 12 1 0.333 2 ==> 1
+ node_25 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 76:
+
+Branch lengths and linkages for tree #76
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 25 root 0 0 0
+ 24 25 0 0 0
+ 22 24 0 0 2
+ 21 22 2 2 3
+ 20 21 3 1 4
+ 19 20 2 1 3
+ 18 19 1 1 1
+ 14 18 0 0 1
+H002 (1) 14 0 0 0
+H009 (11) 14 1 1 1
+ 17 18 0 0 1
+ 16 17 2 2 3
+ 15 16 0 0 1
+H007 (3) 15 2 1 2
+H011 (13) 15 0 0 1
+H012 (10) 16 2 0 2
+H006 (12) 17 1 0 1
+H008 (4) 19 1 0 1
+H014 (5) 20 0 0 0
+H001 (7) 21 0 0 2
+H013 (6) 22 2 0 3
+ 23 24 1 1 1
+H003 (8) 23 1 1 1
+H005 (9) 23 1 1 1
+H010 (2) 25 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+ /------- H002
+ /------------------14
+ | \------- H009
+ |
+ | /------- H007
+ /----18 /----15
+ | | | \------- H011
+ | | /-----16
+ | | | \------------- H012
+ /-----19 \-----17
+ | | \-------------------- H006
+ | |
+ /----20 \--------------------------------- H008
+ | |
+ /-----21 \---------------------------------------- H014
+ | |
+ /-----22 \---------------------------------------------- H001
+ | |
+ | \----------------------------------------------------- H013
+ /----24
+ | | /------- H003
+ | \---------------------------------------------------23
+------25 \------- H005
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_21 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_21 --> node_20 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_20 --> node_19 10 1 1.000 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_19 --> node_18 9 1 1.000 2 ==> 1
+ node_14 --> H009 12 1 0.333 2 ==> 1
+ node_17 --> node_16 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_16 --> H012 11 1 0.333 2 --> 1
+ 13 1 0.333 1 --> 0
+ node_17 --> H006 11 1 0.333 2 --> 1
+ node_19 --> H008 11 1 0.333 2 --> 1
+ node_22 --> H013 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ node_24 --> node_23 3 1 1.000 2 ==> 1
+ node_23 --> H003 4 1 1.000 2 ==> 1
+ node_23 --> H005 12 1 0.333 2 ==> 1
+ node_25 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 77:
+
+Branch lengths and linkages for tree #77
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 24 root 0 0 0
+ 23 24 0 0 0
+ 21 23 0 0 2
+ 20 21 2 2 3
+ 19 20 3 1 4
+ 18 19 2 1 3
+ 17 18 1 1 1
+ 14 17 0 0 1
+H002 (1) 14 0 0 0
+H009 (11) 14 1 1 1
+ 16 17 2 2 3
+ 15 16 0 0 1
+H007 (3) 15 2 1 2
+H011 (13) 15 0 0 1
+H012 (10) 16 2 0 2
+H006 (12) 17 1 0 1
+H008 (4) 18 1 0 1
+H014 (5) 19 0 0 0
+H001 (7) 20 0 0 2
+H013 (6) 21 2 0 3
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (9) 22 1 1 1
+H010 (2) 24 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+ /------- H002
+ /-------------14
+ | \------- H009
+ |
+ | /------- H007
+ | /------15
+ /-----17 | \------- H011
+ | +-----16
+ | | \--------------- H012
+ /-----18 |
+ | | \---------------------- H006
+ | |
+ /------19 \----------------------------- H008
+ | |
+ /-----20 \------------------------------------ H014
+ | |
+ /-----21 \-------------------------------------------- H001
+ | |
+ | \--------------------------------------------------- H013
+ /------23
+ | | /------- H003
+ | \-------------------------------------------------22
+------24 \------- H005
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_20 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_20 --> node_19 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_19 --> node_18 10 1 1.000 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_18 --> node_17 9 1 1.000 2 ==> 1
+ node_14 --> H009 12 1 0.333 2 ==> 1
+ node_17 --> node_16 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_16 --> H012 11 1 0.333 2 --> 1
+ 13 1 0.333 1 --> 0
+ node_17 --> H006 11 1 0.333 2 --> 1
+ node_18 --> H008 11 1 0.333 2 --> 1
+ node_21 --> H013 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+ node_24 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 78:
+
+Branch lengths and linkages for tree #78
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 25 root 0 0 0
+ 24 25 0 0 0
+ 22 24 0 0 2
+ 21 22 2 2 3
+ 20 21 3 1 4
+ 19 20 1 1 3
+ 17 19 1 0 1
+H002 (1) 17 0 0 0
+ 16 17 0 0 1
+ 15 16 2 2 3
+H007 (3) 15 1 0 2
+ 14 15 0 0 1
+H012 (10) 14 1 1 2
+H011 (13) 14 1 0 1
+H009 (11) 16 2 0 2
+ 18 19 2 1 2
+H008 (4) 18 0 0 1
+H006 (12) 18 1 0 1
+H014 (5) 20 0 0 0
+H001 (7) 21 0 0 2
+H013 (6) 22 2 0 3
+ 23 24 1 1 1
+H003 (8) 23 1 1 1
+H005 (9) 23 1 1 1
+H010 (2) 25 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+ /--------------------------- H002
+ |
+ | /------------- H007
+ /----17 |
+ | | /-----15 /------- H012
+ | | | \----14
+ | \-----16 \------- H011
+ /-----19 |
+ | | \-------------------- H009
+ | |
+ | | /------- H008
+ /----20 \------------------------18
+ | | \------- H006
+ | |
+ /-----21 \---------------------------------------- H014
+ | |
+ /-----22 \---------------------------------------------- H001
+ | |
+ | \----------------------------------------------------- H013
+ /----24
+ | | /------- H003
+ | \---------------------------------------------------23
+------25 \------- H005
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_21 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_21 --> node_20 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_20 --> node_19 10 1 1.000 2 ==> 1
+ node_19 --> node_17 9 1 0.500 2 --> 1
+ node_16 --> node_15 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 --> 1
+ node_14 --> H012 11 1 0.500 2 ==> 1
+ node_14 --> H011 13 1 0.333 0 --> 1
+ node_16 --> H009 12 1 0.333 2 --> 1
+ 13 1 0.333 0 --> 1
+ node_19 --> node_18 11 1 0.500 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_18 --> H006 9 1 0.500 2 --> 1
+ node_22 --> H013 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ node_24 --> node_23 3 1 1.000 2 ==> 1
+ node_23 --> H003 4 1 1.000 2 ==> 1
+ node_23 --> H005 12 1 0.333 2 ==> 1
+ node_25 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 79:
+
+Branch lengths and linkages for tree #79
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 22 23 0 0 0
+ 20 22 2 2 2
+ 19 20 3 3 4
+ 18 19 2 1 2
+ 17 18 1 1 1
+H002 (1) 17 0 0 0
+ 16 17 0 0 1
+ 15 16 2 2 3
+H007 (3) 15 2 0 2
+ 14 15 0 0 1
+H012 (10) 14 2 1 2
+H011 (13) 14 0 0 1
+H009 (11) 16 1 0 1
+H006 (12) 17 1 1 1
+H008 (4) 18 1 1 1
+H014 (5) 19 0 0 0
+H013 (6) 20 0 0 1
+H001 (7) 22 2 2 2
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (9) 21 1 1 1
+H010 (2) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+ /----------------------------- H002
+ |
+ | /--------------- H007
+ | |
+ | /-----15 /------- H012
+ /-----17 | \------14
+ | +-----16 \------- H011
+ | | |
+ | | \---------------------- H009
+ /------18 |
+ | | \----------------------------- H006
+ | |
+ /-----19 \------------------------------------ H008
+ | |
+ /-----20 \-------------------------------------------- H014
+ | |
+ | \--------------------------------------------------- H013
+ |
+ /------22---------------------------------------------------------- H001
+ | |
+ | | /------- H003
+------23 \-------------------------------------------------21
+ | \------- H005
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_20 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_20 --> node_19 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_19 --> node_18 10 1 1.000 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_18 --> node_17 9 1 1.000 2 ==> 1
+ node_16 --> node_15 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 --> 1
+ 13 1 0.333 1 --> 0
+ node_14 --> H012 11 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_16 --> H009 12 1 0.333 2 --> 1
+ node_17 --> H006 11 1 0.333 2 ==> 1
+ node_18 --> H008 11 1 0.333 2 ==> 1
+ node_22 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 80:
+
+Branch lengths and linkages for tree #80
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 24 root 0 0 0
+ 23 24 0 0 0
+ 21 23 2 2 3
+ 20 21 3 3 4
+ 19 20 1 1 3
+ 17 19 1 0 1
+H002 (1) 17 0 0 0
+ 16 17 0 0 1
+ 15 16 2 2 3
+H007 (3) 15 1 0 2
+ 14 15 0 0 1
+H012 (10) 14 1 1 2
+H011 (13) 14 1 0 1
+H009 (11) 16 2 0 2
+ 18 19 2 1 2
+H008 (4) 18 0 0 1
+H006 (12) 18 1 0 1
+H014 (5) 20 0 0 0
+H001 (7) 21 0 0 0
+H013 (6) 23 2 2 3
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (9) 22 1 1 1
+H010 (2) 24 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+ /----------------------------- H002
+ |
+ | /--------------- H007
+ /-----17 |
+ | | /-----15 /------- H012
+ | | | \------14
+ | \-----16 \------- H011
+ /------19 |
+ | | \---------------------- H009
+ | |
+ | | /------- H008
+ /-----20 \---------------------------18
+ | | \------- H006
+ | |
+ /-----21 \-------------------------------------------- H014
+ | |
+ | \--------------------------------------------------- H001
+ |
+ /------23---------------------------------------------------------- H013
+ | |
+ | | /------- H003
+------24 \-------------------------------------------------22
+ | \------- H005
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_21 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_21 --> node_20 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_20 --> node_19 10 1 1.000 2 ==> 1
+ node_19 --> node_17 9 1 0.500 2 --> 1
+ node_16 --> node_15 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 --> 1
+ node_14 --> H012 11 1 0.500 2 ==> 1
+ node_14 --> H011 13 1 0.333 0 --> 1
+ node_16 --> H009 12 1 0.333 2 --> 1
+ 13 1 0.333 0 --> 1
+ node_19 --> node_18 11 1 0.500 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_18 --> H006 9 1 0.500 2 --> 1
+ node_23 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+ node_24 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 81:
+
+Branch lengths and linkages for tree #81
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 22 23 0 0 0
+ 20 22 2 2 3
+ 19 20 3 3 4
+ 18 19 2 1 2
+ 17 18 1 1 1
+H002 (1) 17 0 0 0
+ 16 17 0 0 1
+ 15 16 2 2 3
+H007 (3) 15 2 0 2
+ 14 15 0 0 1
+H012 (10) 14 2 1 2
+H011 (13) 14 0 0 1
+H009 (11) 16 1 0 1
+H006 (12) 17 1 1 1
+H008 (4) 18 1 1 1
+H014 (5) 19 0 0 0
+H001 (7) 20 0 0 0
+H013 (6) 22 2 2 3
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (9) 21 1 1 1
+H010 (2) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+ /----------------------------- H002
+ |
+ | /--------------- H007
+ | |
+ | /-----15 /------- H012
+ /-----17 | \------14
+ | +-----16 \------- H011
+ | | |
+ | | \---------------------- H009
+ /------18 |
+ | | \----------------------------- H006
+ | |
+ /-----19 \------------------------------------ H008
+ | |
+ /-----20 \-------------------------------------------- H014
+ | |
+ | \--------------------------------------------------- H001
+ |
+ /------22---------------------------------------------------------- H013
+ | |
+ | | /------- H003
+------23 \-------------------------------------------------21
+ | \------- H005
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_20 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_20 --> node_19 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_19 --> node_18 10 1 1.000 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_18 --> node_17 9 1 1.000 2 ==> 1
+ node_16 --> node_15 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 --> 1
+ 13 1 0.333 1 --> 0
+ node_14 --> H012 11 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_16 --> H009 12 1 0.333 2 --> 1
+ node_17 --> H006 11 1 0.333 2 ==> 1
+ node_18 --> H008 11 1 0.333 2 ==> 1
+ node_22 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 82:
+
+Branch lengths and linkages for tree #82
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 24 root 0 0 0
+ 23 24 0 0 0
+ 21 23 2 2 3
+ 20 21 3 3 4
+ 19 20 2 1 3
+ 14 19 1 0 1
+H002 (1) 14 0 0 0
+H009 (11) 14 1 1 1
+ 18 19 1 1 1
+ 17 18 1 0 1
+ 16 17 2 2 3
+ 15 16 1 1 1
+H007 (3) 15 2 1 2
+H011 (13) 15 0 0 1
+H012 (10) 16 1 0 1
+H006 (12) 17 0 0 0
+H008 (4) 18 0 0 1
+H014 (5) 20 0 0 0
+H001 (7) 21 0 0 0
+H013 (6) 23 2 2 3
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (9) 22 1 1 1
+H010 (2) 24 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+ /------- H002
+ /---------------------------14
+ | \------- H009
+ |
+ | /------- H007
+ | /------15
+ /------19 | \------- H011
+ | | /-----16
+ | | | \--------------- H012
+ | | /-----17
+ /-----20 | | \---------------------- H006
+ | | \-----18
+ | | \----------------------------- H008
+ /-----21 |
+ | | \-------------------------------------------- H014
+ | |
+ | \--------------------------------------------------- H001
+ /------23
+ | +---------------------------------------------------------- H013
+ | |
+ | | /------- H003
+------24 \-------------------------------------------------22
+ | \------- H005
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_21 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_21 --> node_20 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_20 --> node_19 10 1 1.000 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_19 --> node_14 9 1 0.500 2 --> 1
+ node_14 --> H009 12 1 0.333 2 ==> 1
+ node_19 --> node_18 11 1 0.500 2 ==> 1
+ node_18 --> node_17 9 1 0.500 2 --> 1
+ node_17 --> node_16 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_16 --> node_15 11 1 0.500 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_16 --> H012 13 1 0.333 1 --> 0
+ node_23 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+ node_24 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 83:
+
+Branch lengths and linkages for tree #83
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 22 23 0 0 0
+ 20 22 2 2 2
+ 19 20 3 3 4
+ 18 19 2 1 2
+ 17 18 1 1 1
+H002 (1) 17 0 0 0
+ 16 17 0 0 1
+ 15 16 2 2 3
+ 14 15 0 0 1
+H007 (3) 14 2 1 2
+H011 (13) 14 0 0 1
+H012 (10) 15 2 0 2
+H006 (12) 16 1 0 1
+H009 (11) 17 1 1 1
+H008 (4) 18 1 1 1
+H014 (5) 19 0 0 0
+H013 (6) 20 0 0 1
+H001 (7) 22 2 2 2
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (9) 21 1 1 1
+H010 (2) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+ /----------------------------- H002
+ |
+ | /------- H007
+ | /------14
+ | | \------- H011
+ /-----17 /-----15
+ | | | \--------------- H012
+ | +-----16
+ | | \---------------------- H006
+ /------18 |
+ | | \----------------------------- H009
+ | |
+ /-----19 \------------------------------------ H008
+ | |
+ /-----20 \-------------------------------------------- H014
+ | |
+ | \--------------------------------------------------- H013
+ |
+ /------22---------------------------------------------------------- H001
+ | |
+ | | /------- H003
+------23 \-------------------------------------------------21
+ | \------- H005
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_20 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_20 --> node_19 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_19 --> node_18 10 1 1.000 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_18 --> node_17 9 1 1.000 2 ==> 1
+ node_16 --> node_15 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_14 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_15 --> H012 11 1 0.333 2 --> 1
+ 13 1 0.333 1 --> 0
+ node_16 --> H006 11 1 0.333 2 --> 1
+ node_17 --> H009 12 1 0.333 2 ==> 1
+ node_18 --> H008 11 1 0.333 2 ==> 1
+ node_22 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 84:
+
+Branch lengths and linkages for tree #84
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 22 23 0 0 0
+ 20 22 2 2 3
+ 19 20 3 3 4
+ 18 19 2 1 2
+ 17 18 1 1 1
+H002 (1) 17 0 0 0
+ 16 17 0 0 1
+ 15 16 2 2 3
+ 14 15 0 0 1
+H007 (3) 14 2 1 2
+H011 (13) 14 0 0 1
+H012 (10) 15 2 0 2
+H006 (12) 16 1 0 1
+H009 (11) 17 1 1 1
+H008 (4) 18 1 1 1
+H014 (5) 19 0 0 0
+H001 (7) 20 0 0 0
+H013 (6) 22 2 2 3
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (9) 21 1 1 1
+H010 (2) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+ /----------------------------- H002
+ |
+ | /------- H007
+ | /------14
+ | | \------- H011
+ /-----17 /-----15
+ | | | \--------------- H012
+ | +-----16
+ | | \---------------------- H006
+ /------18 |
+ | | \----------------------------- H009
+ | |
+ /-----19 \------------------------------------ H008
+ | |
+ /-----20 \-------------------------------------------- H014
+ | |
+ | \--------------------------------------------------- H001
+ |
+ /------22---------------------------------------------------------- H013
+ | |
+ | | /------- H003
+------23 \-------------------------------------------------21
+ | \------- H005
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_20 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_20 --> node_19 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_19 --> node_18 10 1 1.000 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_18 --> node_17 9 1 1.000 2 ==> 1
+ node_16 --> node_15 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_14 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_15 --> H012 11 1 0.333 2 --> 1
+ 13 1 0.333 1 --> 0
+ node_16 --> H006 11 1 0.333 2 --> 1
+ node_17 --> H009 12 1 0.333 2 ==> 1
+ node_18 --> H008 11 1 0.333 2 ==> 1
+ node_22 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 85:
+
+Branch lengths and linkages for tree #85
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 24 root 0 0 0
+ 23 24 0 0 0
+ 21 23 0 0 2
+ 20 21 2 2 3
+ 19 20 3 1 4
+ 18 19 2 2 3
+H002 (1) 18 0 0 0
+ 17 18 0 0 1
+ 15 17 2 2 3
+ 14 15 0 0 1
+H007 (3) 14 1 1 2
+H011 (13) 14 1 0 1
+H012 (10) 15 1 0 2
+ 16 17 2 0 2
+H008 (4) 16 1 1 1
+H006 (12) 16 0 0 0
+H009 (11) 18 2 1 2
+H014 (5) 19 0 0 0
+H001 (7) 20 0 0 2
+H013 (6) 21 2 0 3
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (9) 22 1 1 1
+H010 (2) 24 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+ /----------------------------- H002
+ |
+ | /------- H007
+ | /------14
+ | | \------- H011
+ | /-----15
+ /-----18 | \--------------- H012
+ | +-----17
+ | | | /------- H008
+ | | \-------------16
+ /------19 | \------- H006
+ | | |
+ | | \----------------------------- H009
+ /-----20 |
+ | | \------------------------------------ H014
+ | |
+ /-----21 \-------------------------------------------- H001
+ | |
+ | \--------------------------------------------------- H013
+ /------23
+ | | /------- H003
+ | \-------------------------------------------------22
+------24 \------- H005
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_20 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_20 --> node_19 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_19 --> node_18 9 1 0.500 2 ==> 1
+ 10 1 1.000 2 ==> 1
+ node_17 --> node_15 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_14 --> H007 12 1 0.333 2 ==> 1
+ node_14 --> H011 13 1 0.333 0 --> 1
+ node_15 --> H012 11 1 0.500 2 --> 1
+ node_17 --> node_16 11 1 0.500 2 --> 1
+ 13 1 0.333 0 --> 1
+ node_16 --> H008 9 1 0.500 1 ==> 2
+ node_18 --> H009 12 1 0.333 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_21 --> H013 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+ node_24 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 86:
+
+Branch lengths and linkages for tree #86
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 25 root 0 0 0
+ 24 25 0 0 0
+ 22 24 0 0 2
+ 21 22 2 2 3
+ 20 21 3 1 4
+ 19 20 2 1 3
+ 14 19 1 0 1
+H002 (1) 14 0 0 0
+H009 (11) 14 1 1 1
+ 18 19 1 1 1
+ 17 18 1 0 1
+ 16 17 2 2 3
+ 15 16 1 1 1
+H007 (3) 15 2 1 2
+H011 (13) 15 0 0 1
+H012 (10) 16 1 0 1
+H006 (12) 17 0 0 0
+H008 (4) 18 0 0 1
+H014 (5) 20 0 0 0
+H001 (7) 21 0 0 2
+H013 (6) 22 2 0 3
+ 23 24 1 1 1
+H003 (8) 23 1 1 1
+H005 (9) 23 1 1 1
+H010 (2) 25 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+ /------- H002
+ /------------------------14
+ | \------- H009
+ |
+ | /------- H007
+ | /----15
+ /-----19 | \------- H011
+ | | /-----16
+ | | | \------------- H012
+ | | /-----17
+ /----20 | | \-------------------- H006
+ | | \----18
+ | | \--------------------------- H008
+ /-----21 |
+ | | \---------------------------------------- H014
+ | |
+ /-----22 \---------------------------------------------- H001
+ | |
+ | \----------------------------------------------------- H013
+ /----24
+ | | /------- H003
+ | \---------------------------------------------------23
+------25 \------- H005
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_21 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_21 --> node_20 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_20 --> node_19 10 1 1.000 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_19 --> node_14 9 1 0.500 2 --> 1
+ node_14 --> H009 12 1 0.333 2 ==> 1
+ node_19 --> node_18 11 1 0.500 2 ==> 1
+ node_18 --> node_17 9 1 0.500 2 --> 1
+ node_17 --> node_16 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_16 --> node_15 11 1 0.500 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_16 --> H012 13 1 0.333 1 --> 0
+ node_22 --> H013 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ node_24 --> node_23 3 1 1.000 2 ==> 1
+ node_23 --> H003 4 1 1.000 2 ==> 1
+ node_23 --> H005 12 1 0.333 2 ==> 1
+ node_25 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 87:
+
+Branch lengths and linkages for tree #87
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 22 23 0 0 0
+ 20 22 2 2 3
+ 19 20 3 3 4
+ 18 19 2 2 3
+H002 (1) 18 0 0 0
+ 17 18 0 0 1
+ 15 17 2 2 3
+ 14 15 0 0 1
+H007 (3) 14 1 1 2
+H011 (13) 14 1 0 1
+H012 (10) 15 1 0 2
+ 16 17 2 0 2
+H008 (4) 16 1 1 1
+H006 (12) 16 0 0 0
+H009 (11) 18 2 1 2
+H014 (5) 19 0 0 0
+H001 (7) 20 0 0 0
+H013 (6) 22 2 2 3
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (9) 21 1 1 1
+H010 (2) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+ /-------------------------------- H002
+ |
+ | /-------- H007
+ | /------14
+ | | \-------- H011
+ | /------15
+ /-------18 | \---------------- H012
+ | +------17
+ | | | /-------- H008
+ | | \--------------16
+ /------19 | \-------- H006
+ | | |
+ | | \-------------------------------- H009
+ /------20 |
+ | | \----------------------------------------- H014
+ | |
+ | \------------------------------------------------- H001
+ /------22
+ | +--------------------------------------------------------- H013
+ | |
+ | | /-------- H003
+-------23 \-----------------------------------------------21
+ | \-------- H005
+ |
+ \----------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_20 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_20 --> node_19 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_19 --> node_18 9 1 0.500 2 ==> 1
+ 10 1 1.000 2 ==> 1
+ node_17 --> node_15 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_14 --> H007 12 1 0.333 2 ==> 1
+ node_14 --> H011 13 1 0.333 0 --> 1
+ node_15 --> H012 11 1 0.500 2 --> 1
+ node_17 --> node_16 11 1 0.500 2 --> 1
+ 13 1 0.333 0 --> 1
+ node_16 --> H008 9 1 0.500 1 ==> 2
+ node_18 --> H009 12 1 0.333 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_22 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 88:
+
+Branch lengths and linkages for tree #88
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 22 23 0 0 0
+ 20 22 0 0 2
+ 19 20 2 2 3
+ 18 19 3 1 4
+ 17 18 3 2 3
+H002 (1) 17 0 0 0
+ 16 17 1 1 1
+ 15 16 2 2 3
+ 14 15 1 1 1
+H007 (3) 14 2 1 2
+H011 (13) 14 0 0 1
+H012 (10) 15 1 0 1
+H008 (4) 16 1 1 1
+H006 (12) 16 0 0 0
+H009 (11) 17 1 1 1
+H014 (5) 18 0 0 0
+H001 (7) 19 0 0 2
+H013 (6) 20 2 0 3
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (9) 21 1 1 1
+H010 (2) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+ /----------------------------- H002
+ |
+ | /------- H007
+ | /------14
+ | | \------- H011
+ | /-----15
+ /-----17 | \--------------- H012
+ | | |
+ | +-----16---------------------- H008
+ | | |
+ /------18 | \---------------------- H006
+ | | |
+ | | \----------------------------- H009
+ /-----19 |
+ | | \------------------------------------ H014
+ | |
+ /-----20 \-------------------------------------------- H001
+ | |
+ | \--------------------------------------------------- H013
+ /------22
+ | | /------- H003
+ | \-------------------------------------------------21
+------23 \------- H005
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_20 --> node_19 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_19 --> node_18 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_18 --> node_17 9 1 0.500 2 ==> 1
+ 10 1 1.000 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_17 --> node_16 11 1 0.500 2 ==> 1
+ node_16 --> node_15 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_15 --> node_14 11 1 0.500 1 ==> 2
+ node_14 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_15 --> H012 13 1 0.333 1 --> 0
+ node_16 --> H008 9 1 0.500 1 ==> 2
+ node_17 --> H009 12 1 0.333 2 ==> 1
+ node_20 --> H013 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 89:
+
+Branch lengths and linkages for tree #89
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 22 root 0 0 0
+ 21 22 0 0 0
+ 19 21 2 2 3
+ 18 19 3 3 4
+ 17 18 3 2 3
+H002 (1) 17 0 0 0
+ 16 17 1 1 1
+ 15 16 2 2 3
+ 14 15 1 1 1
+H007 (3) 14 2 1 2
+H011 (13) 14 0 0 1
+H012 (10) 15 1 0 1
+H008 (4) 16 1 1 1
+H006 (12) 16 0 0 0
+H009 (11) 17 1 1 1
+H014 (5) 18 0 0 0
+H001 (7) 19 0 0 0
+H013 (6) 21 2 2 3
+ 20 21 1 1 1
+H003 (8) 20 1 1 1
+H005 (9) 20 1 1 1
+H010 (2) 22 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+ /-------------------------------- H002
+ |
+ | /-------- H007
+ | /------14
+ | | \-------- H011
+ | /------15
+ /-------17 | \---------------- H012
+ | | |
+ | +------16------------------------ H008
+ | | |
+ /------18 | \------------------------ H006
+ | | |
+ | | \-------------------------------- H009
+ /------19 |
+ | | \----------------------------------------- H014
+ | |
+ | \------------------------------------------------- H001
+ /------21
+ | +--------------------------------------------------------- H013
+ | |
+ | | /-------- H003
+-------22 \-----------------------------------------------20
+ | \-------- H005
+ |
+ \----------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_19 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_19 --> node_18 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_18 --> node_17 9 1 0.500 2 ==> 1
+ 10 1 1.000 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_17 --> node_16 11 1 0.500 2 ==> 1
+ node_16 --> node_15 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_15 --> node_14 11 1 0.500 1 ==> 2
+ node_14 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_15 --> H012 13 1 0.333 1 --> 0
+ node_16 --> H008 9 1 0.500 1 ==> 2
+ node_17 --> H009 12 1 0.333 2 ==> 1
+ node_21 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ node_21 --> node_20 3 1 1.000 2 ==> 1
+ node_20 --> H003 4 1 1.000 2 ==> 1
+ node_20 --> H005 12 1 0.333 2 ==> 1
+ node_22 --> H010 5 1 1.000 2 ==> 1
diff --git a/trunk/test/paup/ancestor_absent/localisation/test.tree b/trunk/test/paup/ancestor_absent/localisation/test.tree
new file mode 100644
index 0000000000000000000000000000000000000000..f5e8deaf5898b31b1eec89f2782a5eff7920d123
--- /dev/null
+++ b/trunk/test/paup/ancestor_absent/localisation/test.tree
@@ -0,0 +1,121 @@
+#NEXUS
+
+Begin trees; [Treefile saved Fri Jan 13 11:11:19 2006]
+[!
+>Data file = /home/cbardel/recherche/logiciel/altree/test/paup/ancestor_absent/localisation/et_caco.paup
+>Heuristic search settings:
+> Optimality criterion = parsimony
+> Character-status summary:
+> 1 character is excluded
+> Of the remaining 12 included characters:
+> All characters are of type 'unord'
+> All characters have equal weight
+> 2 characters are parsimony-uninformative
+> Number of (included) parsimony-informative characters = 10
+> Starting tree(s) obtained via stepwise addition
+> Addition sequence: simple (reference taxon = H002)
+> Number of trees held at each step during stepwise addition = 1
+> Branch-swapping algorithm: tree-bisection-reconnection (TBR)
+> Steepest descent option not in effect
+> 'MaxTrees' setting = 2000 (will not be increased)
+> Branches collapsed (creating polytomies) if maximum branch length is zero
+> 'MulTrees' option in effect
+> Topological constraints not enforced
+> Trees are unrooted
+>
+>Heuristic search completed
+> Total number of rearrangements tried = 69978
+> Score of best tree(s) found = 20
+> Number of trees retained = 89
+> Time used = <1 sec (CPU time = 0.09 sec)
+]
+tree PAUP_1 = [&R] (((((H002,(H008,H014),H009,H006),H007,H012,H011),H013),H001,(H003,H005)),H010);
+tree PAUP_2 = [&R] (((((((H002,(H007,H012,H011),H009,H006),H008),H014),H013),H001),(H003,H005)),H010);
+tree PAUP_3 = [&R] (((((H002,((H008,H014),H006),H009),H007,H012,H011),H013),H001,(H003,H005)),H010);
+tree PAUP_4 = [&R] (((((((H002,H009),(H008,H014),H006),H012),H007,H011),H013),H001,(H003,H005)),H010);
+tree PAUP_5 = [&R] (((((((H002,H009),((H008,H014),H006)),H012),H007,H011),H013),H001,(H003,H005)),H010);
+tree PAUP_6 = [&R] ((((((H002,H009,H006),(H008,H014)),(H007,H012,H011)),H013),H001,(H003,H005)),H010);
+tree PAUP_7 = [&R] ((((((H002,H009,H006),H008,H014),(H007,H012,H011)),H013),H001,(H003,H005)),H010);
+tree PAUP_8 = [&R] ((((((((H002,H009),H006),H008),H014),(H007,H012,H011)),H013),H001,(H003,H005)),H010);
+tree PAUP_9 = [&R] (((((((H002,((H008,H014),H006)),H009),H007),H012,H011),H013),H001,(H003,H005)),H010);
+tree PAUP_10 = [&R] (((((H002,((H008,H006),H014),H009),H007,H012,H011),H013),H001,(H003,H005)),H010);
+tree PAUP_11 = [&R] ((((((((H002,H009),(H008,H014)),H006),H012),H007,H011),H013),H001,(H003,H005)),H010);
+tree PAUP_12 = [&R] (((((H002,(H008,H006),H014,H009),H007,H012,H011),H013),H001,(H003,H005)),H010);
+tree PAUP_13 = [&R] (((((((H002,(H007,H012,H011),H009,H006),H008),H014),H001),H013),(H003,H005)),H010);
+tree PAUP_14 = [&R] ((((((((H002,(H007,H012,H011),H009),H006),H008),H014),H013),H001),(H003,H005)),H010);
+tree PAUP_15 = [&R] ((((((H002,(H007,H012,H011),(H008,H006),H009),H014),H013),H001),(H003,H005)),H010);
+tree PAUP_16 = [&R] (((((((H002,(H008,H006),H009),(H007,H012,H011)),H014),H013),H001),(H003,H005)),H010);
+tree PAUP_17 = [&R] ((((((H002,(H008,H006),H009),H007,H012,H011),H014),H013),H001,(H003,H005)),H010);
+tree PAUP_18 = [&R] (((((((H002,(H007,H012,H011),H009),H006),H008),H014),H001),H013,(H003,H005)),H010);
+tree PAUP_19 = [&R] (((((((H002,(H007,H012,H011),H009),(H008,H006)),H014),H013),H001),(H003,H005)),H010);
+tree PAUP_20 = [&R] ((((((((H002,(H007,H012,H011),H009),H006),H008),H014),H001),H013),(H003,H005)),H010);
+tree PAUP_21 = [&R] (((((((H002,(((H007,H011),H012),H006),H009),H008),H014),H013),H001),(H003,H005)),H010);
+tree PAUP_22 = [&R] (((((((H002,(H007,H012,H011),H009),H006),H008),H014),H013),H001,(H003,H005)),H010);
+tree PAUP_23 = [&R] (((((((((H002,H009),((H007,H011),H012)),H006),H008),H014),H013),H001),(H003,H005)),H010);
+tree PAUP_24 = [&R] ((((((((H002,H009),(((H007,H011),H012),H006)),H008),H014),H013),H001),(H003,H005)),H010);
+tree PAUP_25 = [&R] ((((((((H002,H009),((H007,H011),H012),H006),H008),H014),H013),H001),(H003,H005)),H010);
+tree PAUP_26 = [&R] ((((((((H002,((H007,(H012,H011)),H009)),H006),H008),H014),H013),H001),(H003,H005)),H010);
+tree PAUP_27 = [&R] (((((((H002,(H008,H014),H006),H009),H007),H012,H011),H013),H001,(H003,H005)),H010);
+tree PAUP_28 = [&R] (((((((H002,(H008,H006),H014),H009),H007),H012,H011),H013),H001,(H003,H005)),H010);
+tree PAUP_29 = [&R] (((((((H002,((H008,H006),H014)),H009),H007),H012,H011),H013),H001,(H003,H005)),H010);
+tree PAUP_30 = [&R] (((((((H002,((H007,(H012,H011)),H009)),H006),H008),H014),H013),H001,(H003,H005)),H010);
+tree PAUP_31 = [&R] (((((((H002,((H007,(H012,H011)),H009)),H006),H008),H014),H001),H013,(H003,H005)),H010);
+tree PAUP_32 = [&R] ((((((((H002,(H008,H006)),H009),H007),H012,H011),H014),H013),H001,(H003,H005)),H010);
+tree PAUP_33 = [&R] (((((((((H002,H009),H014),H008),H006),H012),H007,H011),H013),H001,(H003,H005)),H010);
+tree PAUP_34 = [&R] (((((((H002,(H008,H014),H009),H006),H012),H007,H011),H013),H001,(H003,H005)),H010);
+tree PAUP_35 = [&R] ((((((((H002,H009),((H007,H011),H012)),H006),H008),H014),H013),H001,(H003,H005)),H010);
+tree PAUP_36 = [&R] (((((((H002,H014,H009),(H008,H006)),H012),H007,H011),H013),H001,(H003,H005)),H010);
+tree PAUP_37 = [&R] ((((((((H002,H009),(H008,H006)),H012),H007,H011),H014),H013),H001,(H003,H005)),H010);
+tree PAUP_38 = [&R] ((((((((H002,H009),((H007,H011),H012)),H006),H008),H014),H001),H013,(H003,H005)),H010);
+tree PAUP_39 = [&R] (((((((H002,H009,H006),H008),H014),(H007,H012,H011)),H013),H001,(H003,H005)),H010);
+tree PAUP_40 = [&R] ((((((H002,(H008,H006),H009),H014),(H007,H012,H011)),H013),H001,(H003,H005)),H010);
+tree PAUP_41 = [&R] ((((((H002,H009),((H008,H006),H014)),(H007,H012,H011)),H013),H001,(H003,H005)),H010);
+tree PAUP_42 = [&R] ((((((H002,H009),(H008,H006),H014),(H007,H012,H011)),H013),H001,(H003,H005)),H010);
+tree PAUP_43 = [&R] ((((((H002,(H008,H006),H009),(H007,H012,H011)),H014),H013),H001,(H003,H005)),H010);
+tree PAUP_44 = [&R] ((((((((H002,H009),H008,H006),H012),H007,H011),H014),H013),H001,(H003,H005)),H010);
+tree PAUP_45 = [&R] ((((((H002,(H007,H012,H011),H009,H006),H008),H014),H013),H001,(H003,H005)),H010);
+tree PAUP_46 = [&R] (((((((H002,H009),((H007,H011),H012),H006),H008),H014),H013),H001,(H003,H005)),H010);
+tree PAUP_47 = [&R] (((((((H002,H009),(((H007,H011),H012),H006)),H008),H014),H013),H001,(H003,H005)),H010);
+tree PAUP_48 = [&R] (((((((H002,H009),(H008,H006)),H014),(H007,H012,H011)),H013),H001,(H003,H005)),H010);
+tree PAUP_49 = [&R] (((((((H002,H014,H009),H008,H006),H012),H007,H011),H013),H001,(H003,H005)),H010);
+tree PAUP_50 = [&R] ((((((H002,(H007,H012,H011),H009),(H008,H006)),H014),H013),H001,(H003,H005)),H010);
+tree PAUP_51 = [&R] ((((((H002,(H007,H012,H011),H009),(H008,H006)),H014),H001),H013,(H003,H005)),H010);
+tree PAUP_52 = [&R] (((((((H002,H009),(((H007,H011),H012),H006)),H008),H014),H001),H013,(H003,H005)),H010);
+tree PAUP_53 = [&R] (((((((H002,(H007,H012,H011),H009),(H008,H006)),H014),H001),H013),(H003,H005)),H010);
+tree PAUP_54 = [&R] ((((((H002,(H007,H012,H011),(H008,H006),H009),H014),H001),H013),(H003,H005)),H010);
+tree PAUP_55 = [&R] (((((((H002,((H007,(H012,H011)),H009),H006),H008),H014),H001),H013),(H003,H005)),H010);
+tree PAUP_56 = [&R] (((((((H002,(((H007,H011),H012),H006),H009),H008),H014),H001),H013),(H003,H005)),H010);
+tree PAUP_57 = [&R] ((((((H002,(H007,H012,H011),H009,H006),H008),H014),H001),H013,(H003,H005)),H010);
+tree PAUP_58 = [&R] ((((((H002,((H007,(H012,H011)),H009),(H008,H006)),H014),H013),H001),(H003,H005)),H010);
+tree PAUP_59 = [&R] (((((((H002,((H007,(H012,H011)),H009)),(H008,H006)),H014),H013),H001),(H003,H005)),H010);
+tree PAUP_60 = [&R] (((((H002,((H007,(H012,H011)),H009),(H008,H006)),H014),H001),H013,(H003,H005)),H010);
+tree PAUP_61 = [&R] (((((((H002,((H007,(H012,H011)),H009),H006),H008),H014),H013),H001),(H003,H005)),H010);
+tree PAUP_62 = [&R] ((((((H002,(((H007,H011),H012),(H008,H006)),H009),H014),H013),H001),(H003,H005)),H010);
+tree PAUP_63 = [&R] ((((((H002,(((H007,H011),H012),H008,H006),H009),H014),H013),H001),(H003,H005)),H010);
+tree PAUP_64 = [&R] ((((((H002,((H007,(H012,H011)),H009),(H008,H006)),H014),H001),H013),(H003,H005)),H010);
+tree PAUP_65 = [&R] (((((H002,((H007,(H012,H011)),H009),(H008,H006)),H014),H013),H001,(H003,H005)),H010);
+tree PAUP_66 = [&R] (((((H002,(H007,H012,H011),(H008,H006),H009),H014),H001),H013,(H003,H005)),H010);
+tree PAUP_67 = [&R] (((((H002,(((H007,H011),H012),(H008,H006)),H009),H014),H013),H001,(H003,H005)),H010);
+tree PAUP_68 = [&R] ((((((H002,H009),((((H007,H011),H012),H006),H008)),H014),H013),H001,(H003,H005)),H010);
+tree PAUP_69 = [&R] (((((H002,(((H007,H011),H012),H008,H006),H009),H014),H013),H001,(H003,H005)),H010);
+tree PAUP_70 = [&R] (((((H002,(H007,H012,H011),(H008,H006),H009),H014),H013),H001,(H003,H005)),H010);
+tree PAUP_71 = [&R] ((((((H002,((H007,(H012,H011)),H009)),(H008,H006)),H014),H013),H001,(H003,H005)),H010);
+tree PAUP_72 = [&R] (((((((H002,H009),((H007,H011),H012),H006),H008),H014),H001),H013,(H003,H005)),H010);
+tree PAUP_73 = [&R] (((((((H002,H009),((((H007,H011),H012),H006),H008)),H014),H013),H001),(H003,H005)),H010);
+tree PAUP_74 = [&R] ((((((((H002,((H007,(H012,H011)),H009)),H006),H008),H014),H001),H013),(H003,H005)),H010);
+tree PAUP_75 = [&R] (((((((((H002,H009),((H007,H011),H012)),H006),H008),H014),H001),H013),(H003,H005)),H010);
+tree PAUP_76 = [&R] ((((((((H002,H009),(((H007,H011),H012),H006)),H008),H014),H001),H013),(H003,H005)),H010);
+tree PAUP_77 = [&R] ((((((((H002,H009),((H007,H011),H012),H006),H008),H014),H001),H013),(H003,H005)),H010);
+tree PAUP_78 = [&R] (((((((H002,((H007,(H012,H011)),H009)),(H008,H006)),H014),H001),H013),(H003,H005)),H010);
+tree PAUP_79 = [&R] ((((((H002,((H007,(H012,H011)),H009),H006),H008),H014),H013),H001,(H003,H005)),H010);
+tree PAUP_80 = [&R] ((((((H002,((H007,(H012,H011)),H009)),(H008,H006)),H014),H001),H013,(H003,H005)),H010);
+tree PAUP_81 = [&R] ((((((H002,((H007,(H012,H011)),H009),H006),H008),H014),H001),H013,(H003,H005)),H010);
+tree PAUP_82 = [&R] ((((((H002,H009),((((H007,H011),H012),H006),H008)),H014),H001),H013,(H003,H005)),H010);
+tree PAUP_83 = [&R] ((((((H002,(((H007,H011),H012),H006),H009),H008),H014),H013),H001,(H003,H005)),H010);
+tree PAUP_84 = [&R] ((((((H002,(((H007,H011),H012),H006),H009),H008),H014),H001),H013,(H003,H005)),H010);
+tree PAUP_85 = [&R] ((((((H002,(((H007,H011),H012),(H008,H006)),H009),H014),H001),H013),(H003,H005)),H010);
+tree PAUP_86 = [&R] (((((((H002,H009),((((H007,H011),H012),H006),H008)),H014),H001),H013),(H003,H005)),H010);
+tree PAUP_87 = [&R] (((((H002,(((H007,H011),H012),(H008,H006)),H009),H014),H001),H013,(H003,H005)),H010);
+tree PAUP_88 = [&R] ((((((H002,(((H007,H011),H012),H008,H006),H009),H014),H001),H013),(H003,H005)),H010);
+tree PAUP_89 = [&R] (((((H002,(((H007,H011),H012),H008,H006),H009),H014),H001),H013,(H003,H005)),H010);
+End;
diff --git a/trunk/test/paup/ancestor_present/association/1_caco.asso b/trunk/test/paup/ancestor_present/association/1_caco.asso
new file mode 100644
index 0000000000000000000000000000000000000000..0c5149d67fc2bba3df85fec5ff15f7069c4da70e
--- /dev/null
+++ b/trunk/test/paup/ancestor_present/association/1_caco.asso
@@ -0,0 +1,58 @@
+
+ /----* H002 case/control:8/6
+ | /----* H007 case/control:7/13
+ | | Site: 12 Sens: 2-->1
+ | |----* H012 case/control:1/4
+ | | Site: 11 Sens: 2-->1
+ |----* 15 case/control:13/18
+ | | Site: 1 Sens: 1-->2
+ | | Site: 2 Sens: 1-->2
+ | \----* H011 case/control:5/1
+ /----* 17 case/control:66/41
+ | | Site: 10 Sens: 2-->1
+ | | Site: 9 Sens: 2-->1
+ | | /----* H008 case/control:9/2
+ | | | Site: 9 Sens: 1-->2
+ | |----* 16 case/control:37/15
+ | | | Site: 11 Sens: 2-->1
+ | | \----* H006 case/control:28/13
+ | \----* H009 case/control:8/2
+ | Site: 12 Sens: 2-->1
+ /----* 18 case/control:70/43
+ | | Site: 8 Sens: 2-->1
+ | | Site: 1 Sens: 2-->1
+ | | Site: 2 Sens: 2-->1
+ | \----* H014 case/control:4/2
+ /----* 19 case/control:72/47
+ | | Site: 6 Sens: 2-->1
+ | | Site: 7 Sens: 2-->1
+ | \----* H013 case/control:2/4
+ |----* H001 case/control:11/9
+ | Site: 1 Sens: 2-->1
+ | Site: 2 Sens: 2-->1
+ | /----* H003 case/control:5/6
+ | | Site: 4 Sens: 2-->1
+ |----* 20 case/control:12/13
+ | | Site: 3 Sens: 2-->1
+ | \----* H005 case/control:7/7
+ | Site: 12 Sens: 2-->1
+-----* 22+(21) case/control:200/200
+ |
+ | [0] ddl=4 chi2=9.33 p_value_chi2=0.0535
+ | [1] ddl=6 chi2=11.24 p_value_chi2=0.07
+ | [2] ddl=7 chi2=11.30 p_value_chi2=0.112
+ | [3] ddl=10 chi2=19.46 p_value_chi2=0.029
+ | [4] ddl=13 chi2=25.55 p_value_chi2=0.015
+ |----* H000 case/control:98/126
+ \----* H010 case/control:7/5
+ Site: 5 Sens: 2-->1
+
+ Number of permutation: 1
+
+p_val for each level:
+level 1 p-value (non corrected) 0
+level 2 p-value (non corrected) 0
+level 3 p-value (non corrected) 0
+level 4 p-value (non corrected) 0
+level 5 p-value (non corrected) 0
+corrected minimal p_value in the tree: 0
diff --git a/trunk/test/paup/ancestor_present/association/caco.paup b/trunk/test/paup/ancestor_present/association/caco.paup
new file mode 100644
index 0000000000000000000000000000000000000000..23216c4a176220bcc898ec6c95158496b32dd2d6
--- /dev/null
+++ b/trunk/test/paup/ancestor_present/association/caco.paup
@@ -0,0 +1,38 @@
+#Nexus
+Begin data;
+dimension ntax=14 nchar=12;
+format symbols="0123456789" missing=?;
+matrix
+H002 112221111122
+H010 222212222222
+H007 222221111121
+H008 112221112112
+H014 112221112222
+H013 222221122222
+H001 112222222222
+H003 221122222222
+H000 222222222222
+H005 221222222221
+H012 222221111112
+H009 112221111121
+H006 112221111112
+H011 222221111122
+;
+end;
+begin assumptions;
+ancstates *anc vector = 222222222222;
+end;
+begin paup;
+set nowarnreset autoclose maxtrees = 2000 increase= no [- Auto AutoInc = 100] monitor = no taxlabels = full
+root=lundberg warnroot=no opt=deltran [- acctran] ancstates=anc;
+hsearch;
+savetrees from=1 to=1000 file= test.tree root=yes format=altnexus;
+cleartrees nowarn=yes;
+gettrees rooted=yes file=test.tree;
+log file = test.res.log replace= yes [- no];
+describetrees all /plot=cladogram [- phylogram] brlens=yes
+rootmethod=lundberg apolist=yes;
+log stop;
+end;
+quit;
+[WARNING, this file is designed for bi-allelic data. If it is not the case, you may have to modify this input file, for example by specifying the ordered option in the typeset command in the assumption block]
diff --git a/trunk/test/paup/ancestor_present/association/nb_cas_control.txt b/trunk/test/paup/ancestor_present/association/nb_cas_control.txt
new file mode 100644
index 0000000000000000000000000000000000000000..73e173744797dd3e08c5ed9ecd92e2f659aba392
--- /dev/null
+++ b/trunk/test/paup/ancestor_present/association/nb_cas_control.txt
@@ -0,0 +1,16 @@
+H002 m008 c006
+# ceci est un commentaire
+; cici aussi
+H010 cases_007 c005
+H007 m_007 c013
+H008 case009 c002
+H014 m004 c002
+H013 m002 c004
+H001 m011 c009
+H003 m005 c006
+H000 m098 c126
+H005 m007 c007
+H012 m001 c004
+H009 m008 c002
+H006 m028 c013
+H011 m005 c001
diff --git a/trunk/test/paup/ancestor_present/association/run_altree b/trunk/test/paup/ancestor_present/association/run_altree
new file mode 100755
index 0000000000000000000000000000000000000000..b86bbe08173fbf66764112bb409a78d4188926e8
--- /dev/null
+++ b/trunk/test/paup/ancestor_present/association/run_altree
@@ -0,0 +1,16 @@
+#!/bin/sh -x
+
+#To run paup:
+paup caco.paup
+
+# To perform the association test (on the forst tree found in the file
+#test.res.log
+../../../../altree -i test.res.log -j nb_cas_control.txt -a -t SNP \
+ -p paup -r 1 --tree-to-analyse 1 -o 1_caco.asso
+
+
+# To perform the association test without the permutation test (using
+# a theshold for the chi2)
+#../../../../altree -i test.res.log -j nb_cas_control.txt -a -t SNP \
+#-p paup --tree-to-analyse 1 --chi2-threshold 0.05 -r 0 \
+#-o 1_caco.asso
diff --git a/trunk/test/paup/ancestor_present/association/test.res.log b/trunk/test/paup/ancestor_present/association/test.res.log
new file mode 100644
index 0000000000000000000000000000000000000000..fcd098f51164eff6d5f0538d63a2c87ba60e7aa3
--- /dev/null
+++ b/trunk/test/paup/ancestor_present/association/test.res.log
@@ -0,0 +1,8564 @@
+
+P A U P *
+Portable version 4.0b10 for Unix
+Thu Jan 12 21:56:48 2006
+
+ -----------------------------NOTICE-----------------------------
+ This is a beta-test version. Please report any crashes,
+ apparent calculation errors, or other anomalous results.
+ There are no restrictions on publication of results obtained
+ with this version, but you should check the WWW site
+ frequently for bug announcements and/or updated versions.
+ See the README file on the distribution media for details.
+ ----------------------------------------------------------------
+
+Tree description:
+
+ Optimality criterion = parsimony
+ Character-status summary:
+ Of 12 total characters:
+ All characters are of type 'unord'
+ All characters have equal weight
+ 2 characters are parsimony-uninformative
+ Number of parsimony-informative characters = 10
+ Character-state optimization: Delayed transformation (DELTRAN)
+ AncStates = "anc"
+
+Tree number 1:
+
+Branch lengths and linkages for tree #1
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 22 root 0 0 0
+ 21 22 0 0 0
+ 19 21 2 2 2
+ 18 19 3 3 3
+ 17 18 2 2 2
+H002 (1) 17 0 0 0
+ 15 17 2 2 2
+H007 (3) 15 1 1 1
+H012 (11) 15 1 1 1
+H011 (14) 15 0 0 0
+ 16 17 1 1 1
+H008 (4) 16 1 1 1
+H006 (13) 16 0 0 0
+H009 (12) 17 1 1 1
+H014 (5) 18 0 0 0
+H013 (6) 19 0 0 0
+H001 (7) 21 2 2 2
+ 20 21 1 1 1
+H003 (8) 20 1 1 1
+H005 (10) 20 1 1 1
+H000 (9) 21 0 0 0
+H010 (2) 22 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.8095
+Rescaled consistency index (RC) = 0.4857
+
+ /--------------------- H002
+ |
+ | /---------- H007
+ | |
+ +---------15---------- H012
+ | |
+ /--------17 \---------- H011
+ | |
+ | | /---------- H008
+ | +---------16
+ /---------18 | \---------- H006
+ | | |
+ | | \--------------------- H009
+ /--------19 |
+ | | \------------------------------- H014
+ | |
+ | \------------------------------------------ H013
+ |
+ +---------------------------------------------------- H001
+ /---------21
+ | | /---------- H003
+ | +----------------------------------------20
+ | | \---------- H005
+---------22 |
+ | \---------------------------------------------------- H000
+ |
+ \--------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_19 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_19 --> node_18 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_18 --> node_17 9 1 0.500 2 ==> 1
+ 10 1 1.000 2 ==> 1
+ node_17 --> node_15 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ node_15 --> H012 11 1 0.500 2 ==> 1
+ node_17 --> node_16 11 1 0.500 2 ==> 1
+ node_16 --> H008 9 1 0.500 1 ==> 2
+ node_17 --> H009 12 1 0.333 2 ==> 1
+ node_21 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_21 --> node_20 3 1 1.000 2 ==> 1
+ node_20 --> H003 4 1 1.000 2 ==> 1
+ node_20 --> H005 12 1 0.333 2 ==> 1
+ node_22 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 2:
+
+Branch lengths and linkages for tree #2
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 22 23 0 0 0
+ 20 22 2 2 2
+ 19 20 1 1 3
+ 18 19 2 2 2
+ 16 18 2 0 2
+H002 (1) 16 0 0 0
+ 15 16 1 1 1
+H008 (4) 15 1 1 1
+H006 (13) 15 0 0 0
+H009 (12) 16 1 1 1
+ 17 18 0 0 2
+H007 (3) 17 1 1 1
+H012 (11) 17 1 1 1
+H011 (14) 17 0 0 0
+H014 (5) 19 2 0 2
+H013 (6) 20 0 0 0
+H001 (7) 22 2 2 2
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (10) 21 1 1 1
+H000 (9) 22 0 0 0
+H010 (2) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.8095
+Rescaled consistency index (RC) = 0.4857
+
+ /------------------ H002
+ |
+ | /--------- H008
+ /-------16-------15
+ | | \--------- H006
+ | |
+ | \------------------ H009
+ /--------18
+ | | /--------- H007
+ | | |
+ | \----------------17--------- H012
+ /-------19 |
+ | | \--------- H011
+ | |
+ /-------20 \------------------------------------- H014
+ | |
+ | \---------------------------------------------- H013
+ |
+ +------------------------------------------------------- H001
+ /-------22
+ | | /--------- H003
+ | +--------------------------------------------21
+ | | \--------- H005
+--------23 |
+ | \------------------------------------------------------- H000
+ |
+ \---------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_20 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_20 --> node_19 8 1 1.000 2 ==> 1
+ node_19 --> node_18 9 1 0.500 2 ==> 1
+ 10 1 1.000 2 ==> 1
+ node_18 --> node_16 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ node_16 --> node_15 11 1 0.500 2 ==> 1
+ node_15 --> H008 9 1 0.500 1 ==> 2
+ node_16 --> H009 12 1 0.333 2 ==> 1
+ node_17 --> H007 12 1 0.333 2 ==> 1
+ node_17 --> H012 11 1 0.500 2 ==> 1
+ node_19 --> H014 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ node_22 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 3:
+
+Branch lengths and linkages for tree #3
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 22 23 0 0 0
+ 20 22 0 0 2
+ 19 20 2 2 2
+ 18 19 3 1 3
+ 17 18 2 2 2
+H002 (1) 17 0 0 0
+ 15 17 2 2 2
+H007 (3) 15 1 1 1
+H012 (11) 15 1 1 1
+H011 (14) 15 0 0 0
+ 16 17 1 1 1
+H008 (4) 16 1 1 1
+H006 (13) 16 0 0 0
+H009 (12) 17 1 1 1
+H014 (5) 18 0 0 0
+H013 (6) 19 0 0 2
+H001 (7) 20 2 0 2
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (10) 21 1 1 1
+H000 (9) 22 0 0 0
+H010 (2) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.8095
+Rescaled consistency index (RC) = 0.4857
+
+ /------------------ H002
+ |
+ | /--------- H007
+ | |
+ +-------15--------- H012
+ | |
+ /-------17 \--------- H011
+ | |
+ | | /--------- H008
+ | +-------16
+ /--------18 | \--------- H006
+ | | |
+ | | \------------------ H009
+ /-------19 |
+ | | \--------------------------- H014
+ | |
+ /-------20 \------------------------------------- H013
+ | |
+ | \---------------------------------------------- H001
+ |
+ /-------22 /--------- H003
+ | +--------------------------------------------21
+ | | \--------- H005
+--------23 |
+ | \------------------------------------------------------- H000
+ |
+ \---------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_20 --> node_19 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_19 --> node_18 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_18 --> node_17 9 1 0.500 2 ==> 1
+ 10 1 1.000 2 ==> 1
+ node_17 --> node_15 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ node_15 --> H012 11 1 0.500 2 ==> 1
+ node_17 --> node_16 11 1 0.500 2 ==> 1
+ node_16 --> H008 9 1 0.500 1 ==> 2
+ node_17 --> H009 12 1 0.333 2 ==> 1
+ node_20 --> H001 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 4:
+
+Branch lengths and linkages for tree #4
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 24 root 0 0 0
+ 23 24 0 0 0
+ 21 23 2 2 2
+ 20 21 3 3 3
+ 19 20 2 2 2
+H002 (1) 19 0 0 0
+ 17 19 0 0 1
+ 16 17 2 2 2
+H007 (3) 16 1 0 1
+ 15 16 0 0 1
+H012 (11) 15 1 1 1
+H011 (14) 15 0 0 0
+H009 (12) 17 1 0 1
+ 18 19 1 1 1
+H008 (4) 18 1 1 1
+H006 (13) 18 0 0 0
+H014 (5) 20 0 0 0
+H013 (6) 21 0 0 0
+H001 (7) 23 2 2 2
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (10) 22 1 1 1
+H000 (9) 23 0 0 0
+H010 (2) 24 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.8095
+Rescaled consistency index (RC) = 0.4857
+
+ /-------------------------------- H002
+ |
+ | /---------------- H007
+ | |
+ | /------16 /-------- H012
+ | | \------15
+ /-------19------17 \-------- H011
+ | | |
+ | | \------------------------ H009
+ | |
+ /------20 | /-------- H008
+ | | \----------------------18
+ | | \-------- H006
+ /------21 |
+ | | \----------------------------------------- H014
+ | |
+ | \------------------------------------------------- H013
+ |
+ +--------------------------------------------------------- H001
+ /------23
+ | | /-------- H003
+ | +-----------------------------------------------22
+ | | \-------- H005
+-------24 |
+ | \--------------------------------------------------------- H000
+ |
+ \----------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_21 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_21 --> node_20 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_20 --> node_19 9 1 0.500 2 ==> 1
+ 10 1 1.000 2 ==> 1
+ node_17 --> node_16 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 --> 1
+ node_15 --> H012 11 1 0.500 2 ==> 1
+ node_17 --> H009 12 1 0.333 2 --> 1
+ node_19 --> node_18 11 1 0.500 2 ==> 1
+ node_18 --> H008 9 1 0.500 1 ==> 2
+ node_23 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+ node_24 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 5:
+
+Branch lengths and linkages for tree #5
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 22 23 0 0 0
+ 20 22 2 2 2
+ 19 20 1 1 3
+ 17 19 2 2 2
+ 16 17 2 0 2
+H002 (1) 16 0 0 0
+ 15 16 1 1 1
+H008 (4) 15 1 1 1
+H006 (13) 15 0 0 0
+H009 (12) 16 1 1 1
+H014 (5) 17 0 0 2
+ 18 19 2 0 2
+H007 (3) 18 1 1 1
+H012 (11) 18 1 1 1
+H011 (14) 18 0 0 0
+H013 (6) 20 0 0 0
+H001 (7) 22 2 2 2
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (10) 21 1 1 1
+H000 (9) 22 0 0 0
+H010 (2) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.8095
+Rescaled consistency index (RC) = 0.4857
+
+ /------------------ H002
+ |
+ | /--------- H008
+ /-------16-------15
+ | | \--------- H006
+ | |
+ /--------17 \------------------ H009
+ | |
+ | \--------------------------- H014
+ /-------19
+ | | /--------- H007
+ | | |
+ | \--------------------------18--------- H012
+ /-------20 |
+ | | \--------- H011
+ | |
+ | \---------------------------------------------- H013
+ |
+ +------------------------------------------------------- H001
+ /-------22
+ | | /--------- H003
+ | +--------------------------------------------21
+ | | \--------- H005
+--------23 |
+ | \------------------------------------------------------- H000
+ |
+ \---------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_20 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_20 --> node_19 8 1 1.000 2 ==> 1
+ node_19 --> node_17 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_17 --> node_16 9 1 0.333 2 --> 1
+ 10 1 0.500 2 --> 1
+ node_16 --> node_15 11 1 0.500 2 ==> 1
+ node_15 --> H008 9 1 0.333 1 ==> 2
+ node_16 --> H009 12 1 0.333 2 ==> 1
+ node_19 --> node_18 9 1 0.333 2 --> 1
+ 10 1 0.500 2 --> 1
+ node_18 --> H007 12 1 0.333 2 ==> 1
+ node_18 --> H012 11 1 0.500 2 ==> 1
+ node_22 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 6:
+
+Branch lengths and linkages for tree #6
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 24 root 0 0 0
+ 23 24 0 0 0
+ 21 23 2 2 2
+ 20 21 3 3 3
+ 19 20 2 2 2
+H002 (1) 19 0 0 0
+ 18 19 0 0 1
+ 16 18 2 2 2
+ 15 16 0 0 1
+H007 (3) 15 1 1 1
+H011 (14) 15 0 0 0
+H012 (11) 16 1 0 1
+ 17 18 1 0 1
+H008 (4) 17 1 1 1
+H006 (13) 17 0 0 0
+H009 (12) 19 1 1 1
+H014 (5) 20 0 0 0
+H013 (6) 21 0 0 0
+H001 (7) 23 2 2 2
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (10) 22 1 1 1
+H000 (9) 23 0 0 0
+H010 (2) 24 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.8095
+Rescaled consistency index (RC) = 0.4857
+
+ /-------------------------------- H002
+ |
+ | /-------- H007
+ | /------15
+ | | \-------- H011
+ | /------16
+ /-------19 | \---------------- H012
+ | +------18
+ | | | /-------- H008
+ | | \--------------17
+ /------20 | \-------- H006
+ | | |
+ | | \-------------------------------- H009
+ /------21 |
+ | | \----------------------------------------- H014
+ | |
+ | \------------------------------------------------- H013
+ |
+ +--------------------------------------------------------- H001
+ /------23
+ | | /-------- H003
+ | +-----------------------------------------------22
+ | | \-------- H005
+-------24 |
+ | \--------------------------------------------------------- H000
+ |
+ \----------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_21 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_21 --> node_20 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_20 --> node_19 9 1 0.500 2 ==> 1
+ 10 1 1.000 2 ==> 1
+ node_18 --> node_16 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ node_16 --> H012 11 1 0.500 2 --> 1
+ node_18 --> node_17 11 1 0.500 2 --> 1
+ node_17 --> H008 9 1 0.500 1 ==> 2
+ node_19 --> H009 12 1 0.333 2 ==> 1
+ node_23 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+ node_24 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 7:
+
+Branch lengths and linkages for tree #7
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 22 23 0 0 0
+ 20 22 2 2 2
+ 19 20 3 3 3
+ 18 19 2 2 2
+H002 (1) 18 0 0 0
+ 17 18 1 1 1
+ 16 17 2 2 2
+ 15 16 1 1 1
+H007 (3) 15 1 1 1
+H011 (14) 15 0 0 0
+H012 (11) 16 0 0 0
+H008 (4) 17 1 1 1
+H006 (13) 17 0 0 0
+H009 (12) 18 1 1 1
+H014 (5) 19 0 0 0
+H013 (6) 20 0 0 0
+H001 (7) 22 2 2 2
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (10) 21 1 1 1
+H000 (9) 22 0 0 0
+H010 (2) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.8095
+Rescaled consistency index (RC) = 0.4857
+
+ /-------------------------------- H002
+ |
+ | /-------- H007
+ | /------15
+ | | \-------- H011
+ | /------16
+ /-------18 | \---------------- H012
+ | | |
+ | +------17------------------------ H008
+ | | |
+ /------19 | \------------------------ H006
+ | | |
+ | | \-------------------------------- H009
+ /------20 |
+ | | \----------------------------------------- H014
+ | |
+ | \------------------------------------------------- H013
+ |
+ +--------------------------------------------------------- H001
+ /------22
+ | | /-------- H003
+ | +-----------------------------------------------21
+ | | \-------- H005
+-------23 |
+ | \--------------------------------------------------------- H000
+ |
+ \----------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_20 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_20 --> node_19 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_19 --> node_18 9 1 0.500 2 ==> 1
+ 10 1 1.000 2 ==> 1
+ node_18 --> node_17 11 1 0.500 2 ==> 1
+ node_17 --> node_16 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_16 --> node_15 11 1 0.500 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ node_17 --> H008 9 1 0.500 1 ==> 2
+ node_18 --> H009 12 1 0.333 2 ==> 1
+ node_22 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 8:
+
+Branch lengths and linkages for tree #8
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 25 root 0 0 0
+ 24 25 0 0 0
+ 22 24 2 2 2
+ 21 22 3 3 3
+ 20 21 1 1 2
+ 18 20 1 0 1
+H002 (1) 18 0 0 0
+ 17 18 0 0 1
+ 16 17 2 2 2
+H007 (3) 16 1 0 1
+ 15 16 0 0 1
+H012 (11) 15 1 1 1
+H011 (14) 15 0 0 0
+H009 (12) 17 1 0 1
+ 19 20 1 1 1
+H008 (4) 19 0 0 1
+H006 (13) 19 1 0 1
+H014 (5) 21 0 0 0
+H013 (6) 22 0 0 0
+H001 (7) 24 2 2 2
+ 23 24 1 1 1
+H003 (8) 23 1 1 1
+H005 (10) 23 1 1 1
+H000 (9) 24 0 0 0
+H010 (2) 25 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.8095
+Rescaled consistency index (RC) = 0.4857
+
+ /----------------------------- H002
+ |
+ | /--------------- H007
+ /-----18 |
+ | | /-----16 /------- H012
+ | | | \------15
+ | \-----17 \------- H011
+ /------20 |
+ | | \---------------------- H009
+ | |
+ | | /------- H008
+ /-----21 \---------------------------19
+ | | \------- H006
+ | |
+ /-----22 \-------------------------------------------- H014
+ | |
+ | \--------------------------------------------------- H013
+ |
+ +---------------------------------------------------------- H001
+ /------24
+ | | /------- H003
+ | +-------------------------------------------------23
+ | | \------- H005
+------25 |
+ | \---------------------------------------------------------- H000
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_24 --> node_22 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_22 --> node_21 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_21 --> node_20 10 1 1.000 2 ==> 1
+ node_20 --> node_18 9 1 0.500 2 --> 1
+ node_17 --> node_16 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 --> 1
+ node_15 --> H012 11 1 0.500 2 ==> 1
+ node_17 --> H009 12 1 0.333 2 --> 1
+ node_20 --> node_19 11 1 0.500 2 ==> 1
+ node_19 --> H006 9 1 0.500 2 --> 1
+ node_24 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_24 --> node_23 3 1 1.000 2 ==> 1
+ node_23 --> H003 4 1 1.000 2 ==> 1
+ node_23 --> H005 12 1 0.333 2 ==> 1
+ node_25 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 9:
+
+Branch lengths and linkages for tree #9
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 24 root 0 0 0
+ 23 24 0 0 0
+ 21 23 2 2 2
+ 20 21 1 1 1
+ 19 20 2 2 2
+ 18 19 0 0 1
+ 17 18 2 2 2
+ 16 17 0 0 1
+H002 (1) 16 0 0 0
+ 15 16 1 1 1
+H008 (4) 15 1 1 1
+H006 (13) 15 0 0 0
+H009 (12) 17 1 0 1
+H007 (3) 18 1 0 1
+H012 (11) 19 1 1 1
+H011 (14) 19 0 0 0
+H014 (5) 20 2 2 2
+H013 (6) 21 0 0 0
+H001 (7) 23 2 2 2
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (10) 22 1 1 1
+H000 (9) 23 0 0 0
+H010 (2) 24 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.8095
+Rescaled consistency index (RC) = 0.4857
+
+ /--------------- H002
+ |
+ /-----16 /------- H008
+ | \------15
+ /-----17 \------- H006
+ | |
+ /-----18 \---------------------- H009
+ | |
+ | \----------------------------- H007
+ /------19
+ | +------------------------------------ H012
+ | |
+ /-----20 \------------------------------------ H011
+ | |
+ /-----21 \-------------------------------------------- H014
+ | |
+ | \--------------------------------------------------- H013
+ |
+ +---------------------------------------------------------- H001
+ /------23
+ | | /------- H003
+ | +-------------------------------------------------22
+ | | \------- H005
+------24 |
+ | \---------------------------------------------------------- H000
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_21 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_21 --> node_20 8 1 1.000 2 ==> 1
+ node_20 --> node_19 9 1 0.500 2 ==> 1
+ 10 1 1.000 2 ==> 1
+ node_18 --> node_17 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_16 --> node_15 11 1 0.500 2 ==> 1
+ node_15 --> H008 9 1 0.500 1 ==> 2
+ node_17 --> H009 12 1 0.333 2 --> 1
+ node_18 --> H007 12 1 0.333 2 --> 1
+ node_19 --> H012 11 1 0.500 2 ==> 1
+ node_20 --> H014 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_23 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+ node_24 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 10:
+
+Branch lengths and linkages for tree #10
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 22 root 0 0 0
+ 21 22 0 0 0
+ 19 21 2 2 2
+ 18 19 1 1 1
+ 17 18 2 2 2
+ 16 17 2 2 2
+H002 (1) 16 0 0 0
+ 15 16 1 1 1
+H008 (4) 15 1 1 1
+H006 (13) 15 0 0 0
+H009 (12) 16 1 1 1
+H007 (3) 17 1 1 1
+H012 (11) 17 1 1 1
+H011 (14) 17 0 0 0
+H014 (5) 18 2 2 2
+H013 (6) 19 0 0 0
+H001 (7) 21 2 2 2
+ 20 21 1 1 1
+H003 (8) 20 1 1 1
+H005 (10) 20 1 1 1
+H000 (9) 21 0 0 0
+H010 (2) 22 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.8095
+Rescaled consistency index (RC) = 0.4857
+
+ /------------------ H002
+ |
+ | /--------- H008
+ /-------16-------15
+ | | \--------- H006
+ | |
+ | \------------------ H009
+ |
+ /--------17--------------------------- H007
+ | |
+ | +--------------------------- H012
+ /-------18 |
+ | | \--------------------------- H011
+ | |
+ /-------19 \------------------------------------- H014
+ | |
+ | \---------------------------------------------- H013
+ |
+ +------------------------------------------------------- H001
+ /-------21
+ | | /--------- H003
+ | +--------------------------------------------20
+ | | \--------- H005
+--------22 |
+ | \------------------------------------------------------- H000
+ |
+ \---------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_19 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_19 --> node_18 8 1 1.000 2 ==> 1
+ node_18 --> node_17 9 1 0.500 2 ==> 1
+ 10 1 1.000 2 ==> 1
+ node_17 --> node_16 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_16 --> node_15 11 1 0.500 2 ==> 1
+ node_15 --> H008 9 1 0.500 1 ==> 2
+ node_16 --> H009 12 1 0.333 2 ==> 1
+ node_17 --> H007 12 1 0.333 2 ==> 1
+ node_17 --> H012 11 1 0.500 2 ==> 1
+ node_18 --> H014 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_21 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_21 --> node_20 3 1 1.000 2 ==> 1
+ node_20 --> H003 4 1 1.000 2 ==> 1
+ node_20 --> H005 12 1 0.333 2 ==> 1
+ node_22 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 11:
+
+Branch lengths and linkages for tree #11
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 25 root 0 0 0
+ 24 25 0 0 0
+ 22 24 2 2 2
+ 21 22 3 3 3
+ 20 21 1 1 2
+ 19 20 1 1 1
+ 18 19 0 0 1
+H002 (1) 18 0 0 0
+ 17 18 0 0 1
+ 16 17 2 2 2
+H007 (3) 16 1 0 1
+ 15 16 0 0 1
+H012 (11) 15 1 1 1
+H011 (14) 15 0 0 0
+H009 (12) 17 1 0 1
+H006 (13) 19 1 0 1
+H008 (4) 20 1 0 1
+H014 (5) 21 0 0 0
+H013 (6) 22 0 0 0
+H001 (7) 24 2 2 2
+ 23 24 1 1 1
+H003 (8) 23 1 1 1
+H005 (10) 23 1 1 1
+H000 (9) 24 0 0 0
+H010 (2) 25 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.8095
+Rescaled consistency index (RC) = 0.4857
+
+ /--------------------------- H002
+ |
+ | /------------- H007
+ /----18 |
+ | | /-----16 /------- H012
+ | | | \----15
+ | \-----17 \------- H011
+ /-----19 |
+ | | \-------------------- H009
+ | |
+ /----20 \--------------------------------- H006
+ | |
+ /-----21 \---------------------------------------- H008
+ | |
+ /-----22 \---------------------------------------------- H014
+ | |
+ | \----------------------------------------------------- H013
+ |
+ +------------------------------------------------------------ H001
+ /----24
+ | | /------- H003
+ | +---------------------------------------------------23
+ | | \------- H005
+------25 |
+ | \------------------------------------------------------------ H000
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_24 --> node_22 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_22 --> node_21 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_21 --> node_20 10 1 1.000 2 ==> 1
+ node_20 --> node_19 9 1 1.000 2 ==> 1
+ node_17 --> node_16 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 --> 1
+ node_15 --> H012 11 1 0.333 2 ==> 1
+ node_17 --> H009 12 1 0.333 2 --> 1
+ node_19 --> H006 11 1 0.333 2 --> 1
+ node_20 --> H008 11 1 0.333 2 --> 1
+ node_24 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_24 --> node_23 3 1 1.000 2 ==> 1
+ node_23 --> H003 4 1 1.000 2 ==> 1
+ node_23 --> H005 12 1 0.333 2 ==> 1
+ node_25 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 12:
+
+Branch lengths and linkages for tree #12
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 21 root 0 0 0
+ 20 21 0 0 0
+ 18 20 2 2 2
+ 17 18 3 3 3
+ 16 17 2 2 2
+H002 (1) 16 0 0 0
+ 15 16 1 1 1
+H008 (4) 15 1 1 1
+H006 (13) 15 0 0 0
+H014 (5) 16 2 2 2
+H009 (12) 16 1 1 1
+H007 (3) 17 1 1 1
+H012 (11) 17 1 1 1
+H011 (14) 17 0 0 0
+H013 (6) 18 0 0 0
+H001 (7) 20 2 2 2
+ 19 20 1 1 1
+H003 (8) 19 1 1 1
+H005 (10) 19 1 1 1
+H000 (9) 20 0 0 0
+H010 (2) 21 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.8095
+Rescaled consistency index (RC) = 0.4857
+
+ /--------------------- H002
+ |
+ | /---------- H008
+ +---------15
+ /--------16 \---------- H006
+ | |
+ | +--------------------- H014
+ | |
+ | \--------------------- H009
+ /---------17
+ | +------------------------------- H007
+ | |
+ | +------------------------------- H012
+ /--------18 |
+ | | \------------------------------- H011
+ | |
+ | \------------------------------------------ H013
+ |
+ +---------------------------------------------------- H001
+ /---------20
+ | | /---------- H003
+ | +----------------------------------------19
+ | | \---------- H005
+---------21 |
+ | \---------------------------------------------------- H000
+ |
+ \--------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_20 --> node_18 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_18 --> node_17 8 1 1.000 2 ==> 1
+ 9 1 0.333 2 ==> 1
+ 10 1 0.500 2 ==> 1
+ node_17 --> node_16 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_16 --> node_15 11 1 0.500 2 ==> 1
+ node_15 --> H008 9 1 0.333 1 ==> 2
+ node_16 --> H014 9 1 0.333 1 ==> 2
+ 10 1 0.500 1 ==> 2
+ node_16 --> H009 12 1 0.333 2 ==> 1
+ node_17 --> H007 12 1 0.333 2 ==> 1
+ node_17 --> H012 11 1 0.500 2 ==> 1
+ node_20 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_20 --> node_19 3 1 1.000 2 ==> 1
+ node_19 --> H003 4 1 1.000 2 ==> 1
+ node_19 --> H005 12 1 0.333 2 ==> 1
+ node_21 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 13:
+
+Branch lengths and linkages for tree #13
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 22 root 0 0 0
+ 21 22 0 0 0
+ 19 21 2 2 2
+ 18 19 3 3 3
+ 17 18 2 2 2
+H002 (1) 17 0 0 0
+ 15 17 2 2 2
+H007 (3) 15 1 1 1
+H012 (11) 15 1 1 1
+H011 (14) 15 0 0 0
+ 16 17 1 1 1
+H008 (4) 16 1 1 1
+H006 (13) 16 0 0 0
+H009 (12) 17 1 1 1
+H014 (5) 18 0 0 0
+H001 (7) 19 0 0 0
+H013 (6) 21 2 2 2
+ 20 21 1 1 1
+H003 (8) 20 1 1 1
+H005 (10) 20 1 1 1
+H000 (9) 21 0 0 0
+H010 (2) 22 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.8095
+Rescaled consistency index (RC) = 0.4857
+
+ /--------------------- H002
+ |
+ | /---------- H007
+ | |
+ +---------15---------- H012
+ | |
+ /--------17 \---------- H011
+ | |
+ | | /---------- H008
+ | +---------16
+ /---------18 | \---------- H006
+ | | |
+ | | \--------------------- H009
+ /--------19 |
+ | | \------------------------------- H014
+ | |
+ | \------------------------------------------ H001
+ |
+ +---------------------------------------------------- H013
+ /---------21
+ | | /---------- H003
+ | +----------------------------------------20
+ | | \---------- H005
+---------22 |
+ | \---------------------------------------------------- H000
+ |
+ \--------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_19 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_19 --> node_18 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_18 --> node_17 9 1 0.500 2 ==> 1
+ 10 1 1.000 2 ==> 1
+ node_17 --> node_15 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ node_15 --> H012 11 1 0.500 2 ==> 1
+ node_17 --> node_16 11 1 0.500 2 ==> 1
+ node_16 --> H008 9 1 0.500 1 ==> 2
+ node_17 --> H009 12 1 0.333 2 ==> 1
+ node_21 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ node_21 --> node_20 3 1 1.000 2 ==> 1
+ node_20 --> H003 4 1 1.000 2 ==> 1
+ node_20 --> H005 12 1 0.333 2 ==> 1
+ node_22 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 14:
+
+Branch lengths and linkages for tree #14
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 22 23 0 0 0
+ 20 22 0 0 2
+ 19 20 2 2 2
+ 18 19 3 1 3
+ 17 18 2 2 2
+H002 (1) 17 0 0 0
+ 15 17 2 2 2
+H007 (3) 15 1 1 1
+H012 (11) 15 1 1 1
+H011 (14) 15 0 0 0
+ 16 17 1 1 1
+H008 (4) 16 1 1 1
+H006 (13) 16 0 0 0
+H009 (12) 17 1 1 1
+H014 (5) 18 0 0 0
+H001 (7) 19 0 0 2
+H013 (6) 20 2 0 2
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (10) 21 1 1 1
+H000 (9) 22 0 0 0
+H010 (2) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.8095
+Rescaled consistency index (RC) = 0.4857
+
+ /------------------ H002
+ |
+ | /--------- H007
+ | |
+ +-------15--------- H012
+ | |
+ /-------17 \--------- H011
+ | |
+ | | /--------- H008
+ | +-------16
+ /--------18 | \--------- H006
+ | | |
+ | | \------------------ H009
+ /-------19 |
+ | | \--------------------------- H014
+ | |
+ /-------20 \------------------------------------- H001
+ | |
+ | \---------------------------------------------- H013
+ |
+ /-------22 /--------- H003
+ | +--------------------------------------------21
+ | | \--------- H005
+--------23 |
+ | \------------------------------------------------------- H000
+ |
+ \---------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_20 --> node_19 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_19 --> node_18 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_18 --> node_17 9 1 0.500 2 ==> 1
+ 10 1 1.000 2 ==> 1
+ node_17 --> node_15 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ node_15 --> H012 11 1 0.500 2 ==> 1
+ node_17 --> node_16 11 1 0.500 2 ==> 1
+ node_16 --> H008 9 1 0.500 1 ==> 2
+ node_17 --> H009 12 1 0.333 2 ==> 1
+ node_20 --> H013 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 15:
+
+Branch lengths and linkages for tree #15
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 22 23 0 0 0
+ 20 22 2 2 2
+ 19 20 3 3 3
+ 18 19 1 1 2
+ 16 18 1 0 1
+H002 (1) 16 0 0 0
+ 15 16 2 2 2
+H007 (3) 15 1 1 1
+H012 (11) 15 1 1 1
+H011 (14) 15 0 0 0
+H009 (12) 16 1 1 1
+ 17 18 1 1 1
+H008 (4) 17 0 0 1
+H006 (13) 17 1 0 1
+H014 (5) 19 0 0 0
+H013 (6) 20 0 0 0
+H001 (7) 22 2 2 2
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (10) 21 1 1 1
+H000 (9) 22 0 0 0
+H010 (2) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.8095
+Rescaled consistency index (RC) = 0.4857
+
+ /------------------ H002
+ |
+ | /--------- H007
+ | |
+ /-------16-------15--------- H012
+ | | |
+ | | \--------- H011
+ | |
+ /--------18 \------------------ H009
+ | |
+ | | /--------- H008
+ /-------19 \----------------17
+ | | \--------- H006
+ | |
+ /-------20 \------------------------------------- H014
+ | |
+ | \---------------------------------------------- H013
+ |
+ +------------------------------------------------------- H001
+ /-------22
+ | | /--------- H003
+ | +--------------------------------------------21
+ | | \--------- H005
+--------23 |
+ | \------------------------------------------------------- H000
+ |
+ \---------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_20 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_20 --> node_19 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_19 --> node_18 10 1 1.000 2 ==> 1
+ node_18 --> node_16 9 1 0.500 2 --> 1
+ node_16 --> node_15 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ node_15 --> H012 11 1 0.500 2 ==> 1
+ node_16 --> H009 12 1 0.333 2 ==> 1
+ node_18 --> node_17 11 1 0.500 2 ==> 1
+ node_17 --> H006 9 1 0.500 2 --> 1
+ node_22 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 16:
+
+Branch lengths and linkages for tree #16
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 22 root 0 0 0
+ 21 22 0 0 0
+ 19 21 2 2 2
+ 18 19 3 3 3
+ 17 18 1 1 1
+ 16 17 1 1 1
+H002 (1) 16 0 0 0
+ 15 16 2 2 2
+H007 (3) 15 1 1 1
+H012 (11) 15 1 1 1
+H011 (14) 15 0 0 0
+H009 (12) 16 1 1 1
+H006 (13) 16 1 1 1
+H008 (4) 17 1 1 1
+H014 (5) 18 0 0 0
+H013 (6) 19 0 0 0
+H001 (7) 21 2 2 2
+ 20 21 1 1 1
+H003 (8) 20 1 1 1
+H005 (10) 20 1 1 1
+H000 (9) 21 0 0 0
+H010 (2) 22 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.8095
+Rescaled consistency index (RC) = 0.4857
+
+ /------------------ H002
+ |
+ | /--------- H007
+ | |
+ +-------15--------- H012
+ /-------16 |
+ | | \--------- H011
+ | |
+ | +------------------ H009
+ /--------17 |
+ | | \------------------ H006
+ | |
+ /-------18 \--------------------------- H008
+ | |
+ /-------19 \------------------------------------- H014
+ | |
+ | \---------------------------------------------- H013
+ |
+ +------------------------------------------------------- H001
+ /-------21
+ | | /--------- H003
+ | +--------------------------------------------20
+ | | \--------- H005
+--------22 |
+ | \------------------------------------------------------- H000
+ |
+ \---------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_19 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_19 --> node_18 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_18 --> node_17 10 1 1.000 2 ==> 1
+ node_17 --> node_16 9 1 1.000 2 ==> 1
+ node_16 --> node_15 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ node_15 --> H012 11 1 0.333 2 ==> 1
+ node_16 --> H009 12 1 0.333 2 ==> 1
+ node_16 --> H006 11 1 0.333 2 ==> 1
+ node_17 --> H008 11 1 0.333 2 ==> 1
+ node_21 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_21 --> node_20 3 1 1.000 2 ==> 1
+ node_20 --> H003 4 1 1.000 2 ==> 1
+ node_20 --> H005 12 1 0.333 2 ==> 1
+ node_22 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 17:
+
+Branch lengths and linkages for tree #17
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 24 root 0 0 0
+ 23 24 0 0 0
+ 21 23 0 0 2
+ 20 21 2 2 2
+ 19 20 1 1 3
+ 18 19 2 2 2
+ 16 18 2 0 2
+H002 (1) 16 0 0 0
+ 15 16 1 1 1
+H008 (4) 15 1 1 1
+H006 (13) 15 0 0 0
+H009 (12) 16 1 1 1
+ 17 18 0 0 2
+H007 (3) 17 1 1 1
+H012 (11) 17 1 1 1
+H011 (14) 17 0 0 0
+H014 (5) 19 2 0 2
+H013 (6) 20 0 0 2
+H001 (7) 21 2 0 2
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (10) 22 1 1 1
+H000 (9) 23 0 0 0
+H010 (2) 24 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.8095
+Rescaled consistency index (RC) = 0.4857
+
+ /---------------- H002
+ |
+ | /-------- H008
+ /------16------15
+ | | \-------- H006
+ | |
+ | \---------------- H009
+ /------18
+ | | /-------- H007
+ | | |
+ | \--------------17-------- H012
+ /-------19 |
+ | | \-------- H011
+ | |
+ /------20 \-------------------------------- H014
+ | |
+ /------21 \----------------------------------------- H013
+ | |
+ | \------------------------------------------------- H001
+ |
+ /------23 /-------- H003
+ | +-----------------------------------------------22
+ | | \-------- H005
+-------24 |
+ | \--------------------------------------------------------- H000
+ |
+ \----------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_20 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_20 --> node_19 8 1 1.000 2 ==> 1
+ node_19 --> node_18 9 1 0.500 2 ==> 1
+ 10 1 1.000 2 ==> 1
+ node_18 --> node_16 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ node_16 --> node_15 11 1 0.500 2 ==> 1
+ node_15 --> H008 9 1 0.500 1 ==> 2
+ node_16 --> H009 12 1 0.333 2 ==> 1
+ node_17 --> H007 12 1 0.333 2 ==> 1
+ node_17 --> H012 11 1 0.500 2 ==> 1
+ node_19 --> H014 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ node_21 --> H001 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+ node_24 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 18:
+
+Branch lengths and linkages for tree #18
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 24 root 0 0 0
+ 23 24 0 0 0
+ 21 23 0 0 2
+ 20 21 2 2 2
+ 19 20 3 1 3
+ 18 19 1 1 2
+ 16 18 1 0 1
+H002 (1) 16 0 0 0
+ 15 16 2 2 2
+H007 (3) 15 1 1 1
+H012 (11) 15 1 1 1
+H011 (14) 15 0 0 0
+H009 (12) 16 1 1 1
+ 17 18 1 1 1
+H008 (4) 17 0 0 1
+H006 (13) 17 1 0 1
+H014 (5) 19 0 0 0
+H013 (6) 20 0 0 2
+H001 (7) 21 2 0 2
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (10) 22 1 1 1
+H000 (9) 23 0 0 0
+H010 (2) 24 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.8095
+Rescaled consistency index (RC) = 0.4857
+
+ /---------------- H002
+ |
+ | /-------- H007
+ | |
+ /------16------15-------- H012
+ | | |
+ | | \-------- H011
+ | |
+ /------18 \---------------- H009
+ | |
+ | | /-------- H008
+ /-------19 \--------------17
+ | | \-------- H006
+ | |
+ /------20 \-------------------------------- H014
+ | |
+ /------21 \----------------------------------------- H013
+ | |
+ | \------------------------------------------------- H001
+ |
+ /------23 /-------- H003
+ | +-----------------------------------------------22
+ | | \-------- H005
+-------24 |
+ | \--------------------------------------------------------- H000
+ |
+ \----------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_20 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_20 --> node_19 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_19 --> node_18 10 1 1.000 2 ==> 1
+ node_18 --> node_16 9 1 0.500 2 --> 1
+ node_16 --> node_15 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ node_15 --> H012 11 1 0.500 2 ==> 1
+ node_16 --> H009 12 1 0.333 2 ==> 1
+ node_18 --> node_17 11 1 0.500 2 ==> 1
+ node_17 --> H006 9 1 0.500 2 --> 1
+ node_21 --> H001 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+ node_24 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 19:
+
+Branch lengths and linkages for tree #19
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 24 root 0 0 0
+ 23 24 0 0 0
+ 21 23 0 0 2
+ 20 21 2 2 2
+ 19 20 3 1 3
+ 18 19 1 1 2
+ 17 18 1 1 1
+ 16 17 0 0 1
+H002 (1) 16 0 0 0
+ 15 16 2 2 2
+H007 (3) 15 1 1 1
+H012 (11) 15 1 1 1
+H011 (14) 15 0 0 0
+H009 (12) 16 1 1 1
+H006 (13) 17 1 0 1
+H008 (4) 18 1 0 1
+H014 (5) 19 0 0 0
+H013 (6) 20 0 0 2
+H001 (7) 21 2 0 2
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (10) 22 1 1 1
+H000 (9) 23 0 0 0
+H010 (2) 24 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.8095
+Rescaled consistency index (RC) = 0.4857
+
+ /--------------- H002
+ |
+ | /------- H007
+ | |
+ /-----16------15------- H012
+ | | |
+ | | \------- H011
+ /-----17 |
+ | | \--------------- H009
+ | |
+ /-----18 \---------------------- H006
+ | |
+ /------19 \----------------------------- H008
+ | |
+ /-----20 \------------------------------------ H014
+ | |
+ /-----21 \-------------------------------------------- H013
+ | |
+ | \--------------------------------------------------- H001
+ |
+ /------23 /------- H003
+ | +-------------------------------------------------22
+ | | \------- H005
+------24 |
+ | \---------------------------------------------------------- H000
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_20 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_20 --> node_19 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_19 --> node_18 10 1 1.000 2 ==> 1
+ node_18 --> node_17 9 1 1.000 2 ==> 1
+ node_16 --> node_15 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ node_15 --> H012 11 1 0.333 2 ==> 1
+ node_16 --> H009 12 1 0.333 2 ==> 1
+ node_17 --> H006 11 1 0.333 2 --> 1
+ node_18 --> H008 11 1 0.333 2 --> 1
+ node_21 --> H001 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+ node_24 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 20:
+
+Branch lengths and linkages for tree #20
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 25 root 0 0 0
+ 24 25 0 0 0
+ 22 24 0 0 2
+ 21 22 2 2 2
+ 20 21 3 1 3
+ 19 20 2 2 2
+H002 (1) 19 0 0 0
+ 18 19 0 0 1
+ 16 18 2 2 2
+ 15 16 0 0 1
+H007 (3) 15 1 1 1
+H011 (14) 15 0 0 0
+H012 (11) 16 1 0 1
+ 17 18 1 0 1
+H008 (4) 17 1 1 1
+H006 (13) 17 0 0 0
+H009 (12) 19 1 1 1
+H014 (5) 20 0 0 0
+H013 (6) 21 0 0 2
+H001 (7) 22 2 0 2
+ 23 24 1 1 1
+H003 (8) 23 1 1 1
+H005 (10) 23 1 1 1
+H000 (9) 24 0 0 0
+H010 (2) 25 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.8095
+Rescaled consistency index (RC) = 0.4857
+
+ /----------------------------- H002
+ |
+ | /------- H007
+ | /------15
+ | | \------- H011
+ | /-----16
+ /-----19 | \--------------- H012
+ | +-----18
+ | | | /------- H008
+ | | \-------------17
+ /------20 | \------- H006
+ | | |
+ | | \----------------------------- H009
+ /-----21 |
+ | | \------------------------------------ H014
+ | |
+ /-----22 \-------------------------------------------- H013
+ | |
+ | \--------------------------------------------------- H001
+ |
+ /------24 /------- H003
+ | +-------------------------------------------------23
+ | | \------- H005
+------25 |
+ | \---------------------------------------------------------- H000
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_21 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_21 --> node_20 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_20 --> node_19 9 1 0.500 2 ==> 1
+ 10 1 1.000 2 ==> 1
+ node_18 --> node_16 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ node_16 --> H012 11 1 0.500 2 --> 1
+ node_18 --> node_17 11 1 0.500 2 --> 1
+ node_17 --> H008 9 1 0.500 1 ==> 2
+ node_19 --> H009 12 1 0.333 2 ==> 1
+ node_22 --> H001 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ node_24 --> node_23 3 1 1.000 2 ==> 1
+ node_23 --> H003 4 1 1.000 2 ==> 1
+ node_23 --> H005 12 1 0.333 2 ==> 1
+ node_25 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 21:
+
+Branch lengths and linkages for tree #21
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 24 root 0 0 0
+ 23 24 0 0 0
+ 21 23 0 0 2
+ 20 21 2 2 2
+ 19 20 3 1 3
+ 18 19 2 2 2
+H002 (1) 18 0 0 0
+ 17 18 1 1 1
+ 16 17 2 2 2
+ 15 16 1 1 1
+H007 (3) 15 1 1 1
+H011 (14) 15 0 0 0
+H012 (11) 16 0 0 0
+H008 (4) 17 1 1 1
+H006 (13) 17 0 0 0
+H009 (12) 18 1 1 1
+H014 (5) 19 0 0 0
+H013 (6) 20 0 0 2
+H001 (7) 21 2 0 2
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (10) 22 1 1 1
+H000 (9) 23 0 0 0
+H010 (2) 24 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.8095
+Rescaled consistency index (RC) = 0.4857
+
+ /----------------------------- H002
+ |
+ | /------- H007
+ | /------15
+ | | \------- H011
+ | /-----16
+ /-----18 | \--------------- H012
+ | | |
+ | +-----17---------------------- H008
+ | | |
+ /------19 | \---------------------- H006
+ | | |
+ | | \----------------------------- H009
+ /-----20 |
+ | | \------------------------------------ H014
+ | |
+ /-----21 \-------------------------------------------- H013
+ | |
+ | \--------------------------------------------------- H001
+ |
+ /------23 /------- H003
+ | +-------------------------------------------------22
+ | | \------- H005
+------24 |
+ | \---------------------------------------------------------- H000
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_20 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_20 --> node_19 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_19 --> node_18 9 1 0.500 2 ==> 1
+ 10 1 1.000 2 ==> 1
+ node_18 --> node_17 11 1 0.500 2 ==> 1
+ node_17 --> node_16 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_16 --> node_15 11 1 0.500 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ node_17 --> H008 9 1 0.500 1 ==> 2
+ node_18 --> H009 12 1 0.333 2 ==> 1
+ node_21 --> H001 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+ node_24 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 22:
+
+Branch lengths and linkages for tree #22
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 25 root 0 0 0
+ 24 25 0 0 0
+ 22 24 0 0 2
+ 21 22 2 2 2
+ 20 21 3 1 3
+ 19 20 2 2 2
+H002 (1) 19 0 0 0
+ 17 19 0 0 1
+ 16 17 2 2 2
+H007 (3) 16 1 0 1
+ 15 16 0 0 1
+H012 (11) 15 1 1 1
+H011 (14) 15 0 0 0
+H009 (12) 17 1 0 1
+ 18 19 1 1 1
+H008 (4) 18 1 1 1
+H006 (13) 18 0 0 0
+H014 (5) 20 0 0 0
+H013 (6) 21 0 0 2
+H001 (7) 22 2 0 2
+ 23 24 1 1 1
+H003 (8) 23 1 1 1
+H005 (10) 23 1 1 1
+H000 (9) 24 0 0 0
+H010 (2) 25 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.8095
+Rescaled consistency index (RC) = 0.4857
+
+ /----------------------------- H002
+ |
+ | /--------------- H007
+ | |
+ | /-----16 /------- H012
+ | | \------15
+ /-----19-----17 \------- H011
+ | | |
+ | | \---------------------- H009
+ | |
+ /------20 | /------- H008
+ | | \--------------------18
+ | | \------- H006
+ /-----21 |
+ | | \------------------------------------ H014
+ | |
+ /-----22 \-------------------------------------------- H013
+ | |
+ | \--------------------------------------------------- H001
+ |
+ /------24 /------- H003
+ | +-------------------------------------------------23
+ | | \------- H005
+------25 |
+ | \---------------------------------------------------------- H000
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_21 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_21 --> node_20 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_20 --> node_19 9 1 0.500 2 ==> 1
+ 10 1 1.000 2 ==> 1
+ node_17 --> node_16 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 --> 1
+ node_15 --> H012 11 1 0.500 2 ==> 1
+ node_17 --> H009 12 1 0.333 2 --> 1
+ node_19 --> node_18 11 1 0.500 2 ==> 1
+ node_18 --> H008 9 1 0.500 1 ==> 2
+ node_22 --> H001 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ node_24 --> node_23 3 1 1.000 2 ==> 1
+ node_23 --> H003 4 1 1.000 2 ==> 1
+ node_23 --> H005 12 1 0.333 2 ==> 1
+ node_25 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 23:
+
+Branch lengths and linkages for tree #23
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 24 root 0 0 0
+ 23 24 0 0 0
+ 21 23 2 2 2
+ 20 21 1 1 1
+ 19 20 2 2 2
+ 18 19 0 0 1
+ 17 18 2 2 2
+ 15 17 0 0 1
+H002 (1) 15 0 0 0
+H009 (12) 15 1 1 1
+ 16 17 1 0 1
+H008 (4) 16 1 1 1
+H006 (13) 16 0 0 0
+H012 (11) 18 1 0 1
+H007 (3) 19 1 1 1
+H011 (14) 19 0 0 0
+H014 (5) 20 2 2 2
+H013 (6) 21 0 0 0
+H001 (7) 23 2 2 2
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (10) 22 1 1 1
+H000 (9) 23 0 0 0
+H010 (2) 24 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.8095
+Rescaled consistency index (RC) = 0.4857
+
+ /-------- H002
+ /------15
+ | \-------- H009
+ /------17
+ | | /-------- H008
+ | \------16
+ /------18 \-------- H006
+ | |
+ | \------------------------ H012
+ /-------19
+ | +-------------------------------- H007
+ | |
+ /------20 \-------------------------------- H011
+ | |
+ /------21 \----------------------------------------- H014
+ | |
+ | \------------------------------------------------- H013
+ |
+ +--------------------------------------------------------- H001
+ /------23
+ | | /-------- H003
+ | +-----------------------------------------------22
+ | | \-------- H005
+-------24 |
+ | \--------------------------------------------------------- H000
+ |
+ \----------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_21 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_21 --> node_20 8 1 1.000 2 ==> 1
+ node_20 --> node_19 9 1 0.500 2 ==> 1
+ 10 1 1.000 2 ==> 1
+ node_18 --> node_17 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_17 --> node_16 11 1 0.500 2 --> 1
+ node_16 --> H008 9 1 0.500 1 ==> 2
+ node_18 --> H012 11 1 0.500 2 --> 1
+ node_19 --> H007 12 1 0.333 2 ==> 1
+ node_20 --> H014 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_23 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+ node_24 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 24:
+
+Branch lengths and linkages for tree #24
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 24 root 0 0 0
+ 23 24 0 0 0
+ 21 23 2 2 2
+ 20 21 1 1 3
+ 18 20 2 2 2
+ 17 18 1 0 2
+ 15 17 1 0 1
+H002 (1) 15 0 0 0
+H009 (12) 15 1 1 1
+ 16 17 1 1 1
+H008 (4) 16 0 0 1
+H006 (13) 16 1 0 1
+H014 (5) 18 0 0 2
+ 19 20 2 0 2
+H007 (3) 19 1 1 1
+H012 (11) 19 1 1 1
+H011 (14) 19 0 0 0
+H013 (6) 21 0 0 0
+H001 (7) 23 2 2 2
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (10) 22 1 1 1
+H000 (9) 23 0 0 0
+H010 (2) 24 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.8095
+Rescaled consistency index (RC) = 0.4857
+
+ /--------- H002
+ /-------15
+ | \--------- H009
+ /-------17
+ | | /--------- H008
+ | \-------16
+ /--------18 \--------- H006
+ | |
+ | \--------------------------- H014
+ /-------20
+ | | /--------- H007
+ | | |
+ | \--------------------------19--------- H012
+ /-------21 |
+ | | \--------- H011
+ | |
+ | \---------------------------------------------- H013
+ |
+ +------------------------------------------------------- H001
+ /-------23
+ | | /--------- H003
+ | +--------------------------------------------22
+ | | \--------- H005
+--------24 |
+ | \------------------------------------------------------- H000
+ |
+ \---------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_21 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_21 --> node_20 8 1 1.000 2 ==> 1
+ node_20 --> node_18 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_18 --> node_17 10 1 0.500 2 --> 1
+ node_17 --> node_15 9 1 0.333 2 --> 1
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_17 --> node_16 11 1 0.500 2 ==> 1
+ node_16 --> H006 9 1 0.333 2 --> 1
+ node_20 --> node_19 9 1 0.333 2 --> 1
+ 10 1 0.500 2 --> 1
+ node_19 --> H007 12 1 0.333 2 ==> 1
+ node_19 --> H012 11 1 0.500 2 ==> 1
+ node_23 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+ node_24 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 25:
+
+Branch lengths and linkages for tree #25
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 22 23 0 0 0
+ 20 22 2 2 2
+ 19 20 1 1 1
+ 18 19 2 2 2
+ 17 18 1 1 1
+ 16 17 2 2 2
+ 15 16 1 1 1
+H002 (1) 15 0 0 0
+H009 (12) 15 1 1 1
+H008 (4) 16 1 1 1
+H006 (13) 16 0 0 0
+H012 (11) 17 0 0 0
+H007 (3) 18 1 1 1
+H011 (14) 18 0 0 0
+H014 (5) 19 2 2 2
+H013 (6) 20 0 0 0
+H001 (7) 22 2 2 2
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (10) 21 1 1 1
+H000 (9) 22 0 0 0
+H010 (2) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.8095
+Rescaled consistency index (RC) = 0.4857
+
+ /-------- H002
+ /------15
+ | \-------- H009
+ |
+ /------16---------------- H008
+ | |
+ /------17 \---------------- H006
+ | |
+ | \------------------------ H012
+ /-------18
+ | +-------------------------------- H007
+ | |
+ /------19 \-------------------------------- H011
+ | |
+ /------20 \----------------------------------------- H014
+ | |
+ | \------------------------------------------------- H013
+ |
+ +--------------------------------------------------------- H001
+ /------22
+ | | /-------- H003
+ | +-----------------------------------------------21
+ | | \-------- H005
+-------23 |
+ | \--------------------------------------------------------- H000
+ |
+ \----------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_20 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_20 --> node_19 8 1 1.000 2 ==> 1
+ node_19 --> node_18 9 1 0.500 2 ==> 1
+ 10 1 1.000 2 ==> 1
+ node_18 --> node_17 11 1 0.500 2 ==> 1
+ node_17 --> node_16 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_16 --> node_15 11 1 0.500 1 ==> 2
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_16 --> H008 9 1 0.500 1 ==> 2
+ node_18 --> H007 12 1 0.333 2 ==> 1
+ node_19 --> H014 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_22 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 26:
+
+Branch lengths and linkages for tree #26
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 24 root 0 0 0
+ 23 24 0 0 0
+ 21 23 2 2 2
+ 20 21 1 1 2
+ 18 20 2 2 2
+ 17 18 1 0 2
+ 16 17 1 1 1
+ 15 16 0 0 1
+H002 (1) 15 0 0 0
+H009 (12) 15 1 1 1
+H006 (13) 16 1 0 1
+H008 (4) 17 1 0 1
+H014 (5) 18 0 0 1
+ 19 20 2 1 2
+H007 (3) 19 1 1 1
+H012 (11) 19 1 1 1
+H011 (14) 19 0 0 0
+H013 (6) 21 0 0 0
+H001 (7) 23 2 2 2
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (10) 22 1 1 1
+H000 (9) 23 0 0 0
+H010 (2) 24 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.8095
+Rescaled consistency index (RC) = 0.4857
+
+ /-------- H002
+ /------15
+ | \-------- H009
+ /------16
+ | \---------------- H006
+ /------17
+ | \------------------------ H008
+ /-------18
+ | \-------------------------------- H014
+ |
+ /------20 /-------- H007
+ | | |
+ | \-------------------------------19-------- H012
+ /------21 |
+ | | \-------- H011
+ | |
+ | \------------------------------------------------- H013
+ |
+ +--------------------------------------------------------- H001
+ /------23
+ | | /-------- H003
+ | +-----------------------------------------------22
+ | | \-------- H005
+-------24 |
+ | \--------------------------------------------------------- H000
+ |
+ \----------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_21 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_21 --> node_20 8 1 1.000 2 ==> 1
+ node_20 --> node_18 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_18 --> node_17 10 1 0.500 2 --> 1
+ node_17 --> node_16 9 1 0.500 2 ==> 1
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_16 --> H006 11 1 0.333 2 --> 1
+ node_17 --> H008 11 1 0.333 2 --> 1
+ node_20 --> node_19 9 1 0.500 2 ==> 1
+ 10 1 0.500 2 --> 1
+ node_19 --> H007 12 1 0.333 2 ==> 1
+ node_19 --> H012 11 1 0.333 2 ==> 1
+ node_23 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+ node_24 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 27:
+
+Branch lengths and linkages for tree #27
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 22 root 0 0 0
+ 21 22 0 0 0
+ 19 21 2 2 2
+ 18 19 3 3 3
+ 17 18 2 2 2
+H002 (1) 17 0 0 0
+ 16 17 0 0 1
+ 15 16 1 1 1
+H008 (4) 15 1 0 1
+H006 (13) 15 0 0 1
+H014 (5) 16 2 1 2
+H009 (12) 17 1 1 1
+H007 (3) 18 1 1 1
+H012 (11) 18 1 1 1
+H011 (14) 18 0 0 0
+H013 (6) 19 0 0 0
+H001 (7) 21 2 2 2
+ 20 21 1 1 1
+H003 (8) 20 1 1 1
+H005 (10) 20 1 1 1
+H000 (9) 21 0 0 0
+H010 (2) 22 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.8095
+Rescaled consistency index (RC) = 0.4857
+
+ /--------------------------- H002
+ |
+ | /--------- H008
+ | /-------15
+ /--------17 | \--------- H006
+ | +-------16
+ | | \------------------ H014
+ | |
+ | \--------------------------- H009
+ /-------18
+ | +------------------------------------- H007
+ | |
+ | +------------------------------------- H012
+ /-------19 |
+ | | \------------------------------------- H011
+ | |
+ | \---------------------------------------------- H013
+ |
+ +------------------------------------------------------- H001
+ /-------21
+ | | /--------- H003
+ | +--------------------------------------------20
+ | | \--------- H005
+--------22 |
+ | \------------------------------------------------------- H000
+ |
+ \---------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_19 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_19 --> node_18 8 1 1.000 2 ==> 1
+ 9 1 0.333 2 ==> 1
+ 10 1 0.500 2 ==> 1
+ node_18 --> node_17 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_16 --> node_15 11 1 0.500 2 ==> 1
+ node_15 --> H008 9 1 0.333 1 --> 2
+ node_16 --> H014 9 1 0.333 1 --> 2
+ 10 1 0.500 1 ==> 2
+ node_17 --> H009 12 1 0.333 2 ==> 1
+ node_18 --> H007 12 1 0.333 2 ==> 1
+ node_18 --> H012 11 1 0.500 2 ==> 1
+ node_21 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_21 --> node_20 3 1 1.000 2 ==> 1
+ node_20 --> H003 4 1 1.000 2 ==> 1
+ node_20 --> H005 12 1 0.333 2 ==> 1
+ node_22 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 28:
+
+Branch lengths and linkages for tree #28
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 22 root 0 0 0
+ 21 22 0 0 0
+ 19 21 2 2 2
+ 18 19 3 3 3
+ 17 18 2 2 2
+H002 (1) 17 0 0 0
+ 16 17 0 0 1
+ 15 16 1 1 1
+H008 (4) 15 1 0 1
+H014 (5) 15 1 1 2
+H006 (13) 16 1 0 1
+H009 (12) 17 1 1 1
+H007 (3) 18 1 1 1
+H012 (11) 18 1 1 1
+H011 (14) 18 0 0 0
+H013 (6) 19 0 0 0
+H001 (7) 21 2 2 2
+ 20 21 1 1 1
+H003 (8) 20 1 1 1
+H005 (10) 20 1 1 1
+H000 (9) 21 0 0 0
+H010 (2) 22 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.8095
+Rescaled consistency index (RC) = 0.4857
+
+ /--------------------------- H002
+ |
+ | /--------- H008
+ | /-------15
+ /--------17 | \--------- H014
+ | +-------16
+ | | \------------------ H006
+ | |
+ | \--------------------------- H009
+ /-------18
+ | +------------------------------------- H007
+ | |
+ | +------------------------------------- H012
+ /-------19 |
+ | | \------------------------------------- H011
+ | |
+ | \---------------------------------------------- H013
+ |
+ +------------------------------------------------------- H001
+ /-------21
+ | | /--------- H003
+ | +--------------------------------------------20
+ | | \--------- H005
+--------22 |
+ | \------------------------------------------------------- H000
+ |
+ \---------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_19 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_19 --> node_18 8 1 1.000 2 ==> 1
+ 9 1 0.500 2 ==> 1
+ 10 1 0.500 2 ==> 1
+ node_18 --> node_17 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_16 --> node_15 9 1 0.500 1 ==> 2
+ node_15 --> H008 11 1 0.333 2 --> 1
+ node_15 --> H014 10 1 0.500 1 ==> 2
+ node_16 --> H006 11 1 0.333 2 --> 1
+ node_17 --> H009 12 1 0.333 2 ==> 1
+ node_18 --> H007 12 1 0.333 2 ==> 1
+ node_18 --> H012 11 1 0.333 2 ==> 1
+ node_21 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_21 --> node_20 3 1 1.000 2 ==> 1
+ node_20 --> H003 4 1 1.000 2 ==> 1
+ node_20 --> H005 12 1 0.333 2 ==> 1
+ node_22 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 29:
+
+Branch lengths and linkages for tree #29
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 22 23 0 0 0
+ 20 22 0 0 2
+ 19 20 2 2 2
+ 18 19 3 1 3
+ 17 18 1 1 1
+ 16 17 1 1 1
+H002 (1) 16 0 0 0
+ 15 16 2 2 2
+H007 (3) 15 1 1 1
+H012 (11) 15 1 1 1
+H011 (14) 15 0 0 0
+H009 (12) 16 1 1 1
+H006 (13) 16 1 1 1
+H008 (4) 17 1 1 1
+H014 (5) 18 0 0 0
+H013 (6) 19 0 0 2
+H001 (7) 20 2 0 2
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (10) 21 1 1 1
+H000 (9) 22 0 0 0
+H010 (2) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.8095
+Rescaled consistency index (RC) = 0.4857
+
+ /---------------- H002
+ |
+ | /-------- H007
+ | |
+ +------15-------- H012
+ /------16 |
+ | | \-------- H011
+ | |
+ | +---------------- H009
+ /------17 |
+ | | \---------------- H006
+ | |
+ /-------18 \------------------------ H008
+ | |
+ /------19 \-------------------------------- H014
+ | |
+ /------20 \----------------------------------------- H013
+ | |
+ | \------------------------------------------------- H001
+ |
+ /------22 /-------- H003
+ | +-----------------------------------------------21
+ | | \-------- H005
+-------23 |
+ | \--------------------------------------------------------- H000
+ |
+ \----------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_20 --> node_19 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_19 --> node_18 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_18 --> node_17 10 1 1.000 2 ==> 1
+ node_17 --> node_16 9 1 1.000 2 ==> 1
+ node_16 --> node_15 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ node_15 --> H012 11 1 0.333 2 ==> 1
+ node_16 --> H009 12 1 0.333 2 ==> 1
+ node_16 --> H006 11 1 0.333 2 ==> 1
+ node_17 --> H008 11 1 0.333 2 ==> 1
+ node_20 --> H001 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 30:
+
+Branch lengths and linkages for tree #30
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 22 23 0 0 0
+ 20 22 2 2 2
+ 19 20 2 2 3
+ 17 19 2 2 2
+ 15 17 1 0 1
+H002 (1) 15 0 0 0
+H009 (12) 15 1 1 1
+ 16 17 1 1 1
+H008 (4) 16 0 0 1
+H006 (13) 16 1 0 1
+H014 (5) 17 1 1 2
+ 18 19 1 0 1
+H007 (3) 18 1 1 1
+H012 (11) 18 1 1 1
+H011 (14) 18 0 0 0
+H013 (6) 20 0 0 0
+H001 (7) 22 2 2 2
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (10) 21 1 1 1
+H000 (9) 22 0 0 0
+H010 (2) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.8095
+Rescaled consistency index (RC) = 0.4857
+
+ /---------- H002
+ /---------15
+ | \---------- H009
+ |
+ | /---------- H008
+ /--------17---------16
+ | | \---------- H006
+ | |
+ | \--------------------- H014
+ /---------19
+ | | /---------- H007
+ | | |
+ | \-------------------18---------- H012
+ /--------20 |
+ | | \---------- H011
+ | |
+ | \------------------------------------------ H013
+ |
+ +---------------------------------------------------- H001
+ /---------22
+ | | /---------- H003
+ | +----------------------------------------21
+ | | \---------- H005
+---------23 |
+ | \---------------------------------------------------- H000
+ |
+ \--------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_20 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_20 --> node_19 8 1 1.000 2 ==> 1
+ 10 1 0.500 2 ==> 1
+ node_19 --> node_17 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_17 --> node_15 9 1 0.333 2 --> 1
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_17 --> node_16 11 1 0.500 2 ==> 1
+ node_16 --> H006 9 1 0.333 2 --> 1
+ node_17 --> H014 10 1 0.500 1 ==> 2
+ node_19 --> node_18 9 1 0.333 2 --> 1
+ node_18 --> H007 12 1 0.333 2 ==> 1
+ node_18 --> H012 11 1 0.500 2 ==> 1
+ node_22 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 31:
+
+Branch lengths and linkages for tree #31
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 26 root 0 0 0
+ 25 26 0 0 0
+ 23 25 0 0 2
+ 22 23 2 2 2
+ 21 22 3 1 3
+ 20 21 1 1 2
+ 18 20 1 0 1
+H002 (1) 18 0 0 0
+ 17 18 0 0 1
+ 16 17 2 2 2
+H007 (3) 16 1 0 1
+ 15 16 0 0 1
+H012 (11) 15 1 1 1
+H011 (14) 15 0 0 0
+H009 (12) 17 1 0 1
+ 19 20 1 1 1
+H008 (4) 19 0 0 1
+H006 (13) 19 1 0 1
+H014 (5) 21 0 0 0
+H013 (6) 22 0 0 2
+H001 (7) 23 2 0 2
+ 24 25 1 1 1
+H003 (8) 24 1 1 1
+H005 (10) 24 1 1 1
+H000 (9) 25 0 0 0
+H010 (2) 26 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.8095
+Rescaled consistency index (RC) = 0.4857
+
+ /--------------------------- H002
+ |
+ | /------------- H007
+ /----18 |
+ | | /-----16 /------- H012
+ | | | \----15
+ | \-----17 \------- H011
+ /-----20 |
+ | | \-------------------- H009
+ | |
+ | | /------- H008
+ /----21 \------------------------19
+ | | \------- H006
+ | |
+ /-----22 \---------------------------------------- H014
+ | |
+ /-----23 \---------------------------------------------- H013
+ | |
+ | \----------------------------------------------------- H001
+ |
+ /----25 /------- H003
+ | +---------------------------------------------------24
+ | | \------- H005
+------26 |
+ | \------------------------------------------------------------ H000
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_22 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_22 --> node_21 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_21 --> node_20 10 1 1.000 2 ==> 1
+ node_20 --> node_18 9 1 0.500 2 --> 1
+ node_17 --> node_16 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 --> 1
+ node_15 --> H012 11 1 0.500 2 ==> 1
+ node_17 --> H009 12 1 0.333 2 --> 1
+ node_20 --> node_19 11 1 0.500 2 ==> 1
+ node_19 --> H006 9 1 0.500 2 --> 1
+ node_23 --> H001 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ node_25 --> node_24 3 1 1.000 2 ==> 1
+ node_24 --> H003 4 1 1.000 2 ==> 1
+ node_24 --> H005 12 1 0.333 2 ==> 1
+ node_26 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 32:
+
+Branch lengths and linkages for tree #32
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 26 root 0 0 0
+ 25 26 0 0 0
+ 23 25 0 0 2
+ 22 23 2 2 2
+ 21 22 3 1 3
+ 20 21 1 1 2
+ 15 20 1 0 1
+H002 (1) 15 0 0 0
+H009 (12) 15 1 1 1
+ 19 20 1 1 1
+ 18 19 1 0 1
+ 17 18 2 2 2
+ 16 17 1 1 1
+H007 (3) 16 1 1 1
+H011 (14) 16 0 0 0
+H012 (11) 17 0 0 0
+H006 (13) 18 0 0 0
+H008 (4) 19 0 0 1
+H014 (5) 21 0 0 0
+H013 (6) 22 0 0 2
+H001 (7) 23 2 0 2
+ 24 25 1 1 1
+H003 (8) 24 1 1 1
+H005 (10) 24 1 1 1
+H000 (9) 25 0 0 0
+H010 (2) 26 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.8095
+Rescaled consistency index (RC) = 0.4857
+
+ /------- H002
+ /------------------------15
+ | \------- H009
+ |
+ | /------- H007
+ | /----16
+ /-----20 | \------- H011
+ | | /-----17
+ | | | \------------- H012
+ | | /-----18
+ /----21 | | \-------------------- H006
+ | | \----19
+ | | \--------------------------- H008
+ /-----22 |
+ | | \---------------------------------------- H014
+ | |
+ /-----23 \---------------------------------------------- H013
+ | |
+ | \----------------------------------------------------- H001
+ |
+ /----25 /------- H003
+ | +---------------------------------------------------24
+ | | \------- H005
+------26 |
+ | \------------------------------------------------------------ H000
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_22 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_22 --> node_21 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_21 --> node_20 10 1 1.000 2 ==> 1
+ node_20 --> node_15 9 1 0.500 2 --> 1
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_20 --> node_19 11 1 0.500 2 ==> 1
+ node_19 --> node_18 9 1 0.500 2 --> 1
+ node_18 --> node_17 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_17 --> node_16 11 1 0.500 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 ==> 1
+ node_23 --> H001 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ node_25 --> node_24 3 1 1.000 2 ==> 1
+ node_24 --> H003 4 1 1.000 2 ==> 1
+ node_24 --> H005 12 1 0.333 2 ==> 1
+ node_26 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 33:
+
+Branch lengths and linkages for tree #33
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 24 root 0 0 0
+ 23 24 0 0 0
+ 21 23 2 2 2
+ 20 21 3 3 3
+ 19 20 1 1 1
+ 18 19 1 1 1
+H002 (1) 18 0 0 0
+ 17 18 0 0 1
+ 16 17 2 2 2
+H007 (3) 16 1 0 1
+ 15 16 0 0 1
+H012 (11) 15 1 1 1
+H011 (14) 15 0 0 0
+H009 (12) 17 1 0 1
+H006 (13) 18 1 1 1
+H008 (4) 19 1 1 1
+H014 (5) 20 0 0 0
+H013 (6) 21 0 0 0
+H001 (7) 23 2 2 2
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (10) 22 1 1 1
+H000 (9) 23 0 0 0
+H010 (2) 24 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.8095
+Rescaled consistency index (RC) = 0.4857
+
+ /----------------------------- H002
+ |
+ | /--------------- H007
+ | |
+ | /-----16 /------- H012
+ /-----18 | \------15
+ | +-----17 \------- H011
+ | | |
+ | | \---------------------- H009
+ /------19 |
+ | | \----------------------------- H006
+ | |
+ /-----20 \------------------------------------ H008
+ | |
+ /-----21 \-------------------------------------------- H014
+ | |
+ | \--------------------------------------------------- H013
+ |
+ +---------------------------------------------------------- H001
+ /------23
+ | | /------- H003
+ | +-------------------------------------------------22
+ | | \------- H005
+------24 |
+ | \---------------------------------------------------------- H000
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_21 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_21 --> node_20 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_20 --> node_19 10 1 1.000 2 ==> 1
+ node_19 --> node_18 9 1 1.000 2 ==> 1
+ node_17 --> node_16 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 --> 1
+ node_15 --> H012 11 1 0.333 2 ==> 1
+ node_17 --> H009 12 1 0.333 2 --> 1
+ node_18 --> H006 11 1 0.333 2 ==> 1
+ node_19 --> H008 11 1 0.333 2 ==> 1
+ node_23 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+ node_24 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 34:
+
+Branch lengths and linkages for tree #34
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 24 root 0 0 0
+ 23 24 0 0 0
+ 21 23 2 2 2
+ 20 21 3 3 3
+ 19 20 2 2 2
+H002 (1) 19 0 0 0
+ 17 19 0 0 1
+ 16 17 2 2 2
+H007 (3) 16 1 0 1
+ 15 16 0 0 1
+H012 (11) 15 1 1 1
+H011 (14) 15 0 0 0
+H009 (12) 17 1 0 1
+ 18 19 1 1 1
+H008 (4) 18 1 1 1
+H006 (13) 18 0 0 0
+H014 (5) 20 0 0 0
+H001 (7) 21 0 0 0
+H013 (6) 23 2 2 2
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (10) 22 1 1 1
+H000 (9) 23 0 0 0
+H010 (2) 24 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.8095
+Rescaled consistency index (RC) = 0.4857
+
+ /-------------------------------- H002
+ |
+ | /---------------- H007
+ | |
+ | /------16 /-------- H012
+ | | \------15
+ /-------19------17 \-------- H011
+ | | |
+ | | \------------------------ H009
+ | |
+ /------20 | /-------- H008
+ | | \----------------------18
+ | | \-------- H006
+ /------21 |
+ | | \----------------------------------------- H014
+ | |
+ | \------------------------------------------------- H001
+ |
+ +--------------------------------------------------------- H013
+ /------23
+ | | /-------- H003
+ | +-----------------------------------------------22
+ | | \-------- H005
+-------24 |
+ | \--------------------------------------------------------- H000
+ |
+ \----------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_21 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_21 --> node_20 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_20 --> node_19 9 1 0.500 2 ==> 1
+ 10 1 1.000 2 ==> 1
+ node_17 --> node_16 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 --> 1
+ node_15 --> H012 11 1 0.500 2 ==> 1
+ node_17 --> H009 12 1 0.333 2 --> 1
+ node_19 --> node_18 11 1 0.500 2 ==> 1
+ node_18 --> H008 9 1 0.500 1 ==> 2
+ node_23 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+ node_24 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 35:
+
+Branch lengths and linkages for tree #35
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 22 23 0 0 0
+ 20 22 2 2 2
+ 19 20 3 3 3
+ 18 19 0 0 1
+ 17 18 2 2 2
+ 16 17 0 0 1
+H002 (1) 16 0 0 0
+ 15 16 1 1 1
+H008 (4) 15 1 1 1
+H006 (13) 15 0 0 0
+H014 (5) 16 2 2 2
+H009 (12) 17 1 0 1
+H007 (3) 18 1 0 1
+H012 (11) 19 1 1 1
+H011 (14) 19 0 0 0
+H013 (6) 20 0 0 0
+H001 (7) 22 2 2 2
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (10) 21 1 1 1
+H000 (9) 22 0 0 0
+H010 (2) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.8095
+Rescaled consistency index (RC) = 0.4857
+
+ /---------------- H002
+ |
+ | /-------- H008
+ /------16------15
+ | | \-------- H006
+ | |
+ /------17 \---------------- H014
+ | |
+ /-------18 \------------------------ H009
+ | |
+ | \-------------------------------- H007
+ /------19
+ | +----------------------------------------- H012
+ | |
+ /------20 \----------------------------------------- H011
+ | |
+ | \------------------------------------------------- H013
+ |
+ +--------------------------------------------------------- H001
+ /------22
+ | | /-------- H003
+ | +-----------------------------------------------21
+ | | \-------- H005
+-------23 |
+ | \--------------------------------------------------------- H000
+ |
+ \----------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_20 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_20 --> node_19 8 1 1.000 2 ==> 1
+ 9 1 0.333 2 ==> 1
+ 10 1 0.500 2 ==> 1
+ node_18 --> node_17 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_16 --> node_15 11 1 0.500 2 ==> 1
+ node_15 --> H008 9 1 0.333 1 ==> 2
+ node_16 --> H014 9 1 0.333 1 ==> 2
+ 10 1 0.500 1 ==> 2
+ node_17 --> H009 12 1 0.333 2 --> 1
+ node_18 --> H007 12 1 0.333 2 --> 1
+ node_19 --> H012 11 1 0.500 2 ==> 1
+ node_22 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 36:
+
+Branch lengths and linkages for tree #36
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 25 root 0 0 0
+ 24 25 0 0 0
+ 22 24 0 0 2
+ 21 22 2 2 2
+ 20 21 3 1 3
+ 19 20 2 2 2
+H002 (1) 19 0 0 0
+ 17 19 0 0 1
+ 16 17 2 2 2
+H007 (3) 16 1 0 1
+ 15 16 0 0 1
+H012 (11) 15 1 1 1
+H011 (14) 15 0 0 0
+H009 (12) 17 1 0 1
+ 18 19 1 1 1
+H008 (4) 18 1 1 1
+H006 (13) 18 0 0 0
+H014 (5) 20 0 0 0
+H001 (7) 21 0 0 2
+H013 (6) 22 2 0 2
+ 23 24 1 1 1
+H003 (8) 23 1 1 1
+H005 (10) 23 1 1 1
+H000 (9) 24 0 0 0
+H010 (2) 25 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.8095
+Rescaled consistency index (RC) = 0.4857
+
+ /----------------------------- H002
+ |
+ | /--------------- H007
+ | |
+ | /-----16 /------- H012
+ | | \------15
+ /-----19-----17 \------- H011
+ | | |
+ | | \---------------------- H009
+ | |
+ /------20 | /------- H008
+ | | \--------------------18
+ | | \------- H006
+ /-----21 |
+ | | \------------------------------------ H014
+ | |
+ /-----22 \-------------------------------------------- H001
+ | |
+ | \--------------------------------------------------- H013
+ |
+ /------24 /------- H003
+ | +-------------------------------------------------23
+ | | \------- H005
+------25 |
+ | \---------------------------------------------------------- H000
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_21 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_21 --> node_20 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_20 --> node_19 9 1 0.500 2 ==> 1
+ 10 1 1.000 2 ==> 1
+ node_17 --> node_16 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 --> 1
+ node_15 --> H012 11 1 0.500 2 ==> 1
+ node_17 --> H009 12 1 0.333 2 --> 1
+ node_19 --> node_18 11 1 0.500 2 ==> 1
+ node_18 --> H008 9 1 0.500 1 ==> 2
+ node_22 --> H013 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ node_24 --> node_23 3 1 1.000 2 ==> 1
+ node_23 --> H003 4 1 1.000 2 ==> 1
+ node_23 --> H005 12 1 0.333 2 ==> 1
+ node_25 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 37:
+
+Branch lengths and linkages for tree #37
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 22 23 0 0 0
+ 20 22 2 2 2
+ 19 20 3 3 3
+ 18 19 0 0 1
+ 17 18 2 2 2
+ 15 17 0 0 1
+H002 (1) 15 0 0 0
+H014 (5) 15 2 2 2
+H009 (12) 15 1 1 1
+ 16 17 1 0 1
+H008 (4) 16 1 1 1
+H006 (13) 16 0 0 0
+H012 (11) 18 1 0 1
+H007 (3) 19 1 1 1
+H011 (14) 19 0 0 0
+H013 (6) 20 0 0 0
+H001 (7) 22 2 2 2
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (10) 21 1 1 1
+H000 (9) 22 0 0 0
+H010 (2) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.8095
+Rescaled consistency index (RC) = 0.4857
+
+ /--------- H002
+ |
+ /-------15--------- H014
+ | |
+ | \--------- H009
+ /-------17
+ | | /--------- H008
+ | \-------16
+ /--------18 \--------- H006
+ | |
+ | \--------------------------- H012
+ /-------19
+ | +------------------------------------- H007
+ | |
+ /-------20 \------------------------------------- H011
+ | |
+ | \---------------------------------------------- H013
+ |
+ +------------------------------------------------------- H001
+ /-------22
+ | | /--------- H003
+ | +--------------------------------------------21
+ | | \--------- H005
+--------23 |
+ | \------------------------------------------------------- H000
+ |
+ \---------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_20 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_20 --> node_19 8 1 1.000 2 ==> 1
+ 9 1 0.333 2 ==> 1
+ 10 1 0.500 2 ==> 1
+ node_18 --> node_17 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_15 --> H014 9 1 0.333 1 ==> 2
+ 10 1 0.500 1 ==> 2
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_17 --> node_16 11 1 0.500 2 --> 1
+ node_16 --> H008 9 1 0.333 1 ==> 2
+ node_18 --> H012 11 1 0.500 2 --> 1
+ node_19 --> H007 12 1 0.333 2 ==> 1
+ node_22 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 38:
+
+Branch lengths and linkages for tree #38
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 24 root 0 0 0
+ 23 24 0 0 0
+ 21 23 2 2 2
+ 20 21 2 2 3
+ 18 20 2 2 2
+ 15 18 1 0 1
+H002 (1) 15 0 0 0
+H009 (12) 15 1 1 1
+ 17 18 0 0 1
+ 16 17 1 1 1
+H008 (4) 16 0 0 1
+H006 (13) 16 1 0 1
+H014 (5) 17 1 1 2
+ 19 20 1 0 1
+H007 (3) 19 1 1 1
+H012 (11) 19 1 1 1
+H011 (14) 19 0 0 0
+H013 (6) 21 0 0 0
+H001 (7) 23 2 2 2
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (10) 22 1 1 1
+H000 (9) 23 0 0 0
+H010 (2) 24 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.8095
+Rescaled consistency index (RC) = 0.4857
+
+ /--------- H002
+ /----------------15
+ | \--------- H009
+ |
+ /--------18 /--------- H008
+ | | /-------16
+ | | | \--------- H006
+ | \-------17
+ /-------20 \------------------ H014
+ | |
+ | | /--------- H007
+ | | |
+ /-------21 \--------------------------19--------- H012
+ | | |
+ | | \--------- H011
+ | |
+ | \---------------------------------------------- H013
+ |
+ /-------23------------------------------------------------------- H001
+ | |
+ | | /--------- H003
+ | +--------------------------------------------22
+--------24 | \--------- H005
+ | |
+ | \------------------------------------------------------- H000
+ |
+ \---------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_21 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_21 --> node_20 8 1 1.000 2 ==> 1
+ 10 1 0.500 2 ==> 1
+ node_20 --> node_18 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_18 --> node_15 9 1 0.333 2 --> 1
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_17 --> node_16 11 1 0.500 2 ==> 1
+ node_16 --> H006 9 1 0.333 2 --> 1
+ node_17 --> H014 10 1 0.500 1 ==> 2
+ node_20 --> node_19 9 1 0.333 2 --> 1
+ node_19 --> H007 12 1 0.333 2 ==> 1
+ node_19 --> H012 11 1 0.500 2 ==> 1
+ node_23 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+ node_24 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 39:
+
+Branch lengths and linkages for tree #39
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 22 23 0 0 0
+ 20 22 2 2 2
+ 19 20 1 1 2
+ 17 19 2 2 2
+ 16 17 1 0 1
+ 15 16 1 1 1
+H002 (1) 15 0 0 0
+H009 (12) 15 1 1 1
+H006 (13) 15 1 1 1
+H008 (4) 16 1 1 1
+H014 (5) 17 0 0 1
+ 18 19 2 1 2
+H007 (3) 18 1 1 1
+H012 (11) 18 1 1 1
+H011 (14) 18 0 0 0
+H013 (6) 20 0 0 0
+H001 (7) 22 2 2 2
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (10) 21 1 1 1
+H000 (9) 22 0 0 0
+H010 (2) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.8095
+Rescaled consistency index (RC) = 0.4857
+
+ /--------- H002
+ |
+ /-------15--------- H009
+ | |
+ /-------16 \--------- H006
+ | |
+ /--------17 \------------------ H008
+ | |
+ | \--------------------------- H014
+ /-------19
+ | | /--------- H007
+ | | |
+ | \--------------------------18--------- H012
+ /-------20 |
+ | | \--------- H011
+ | |
+ | \---------------------------------------------- H013
+ |
+ +------------------------------------------------------- H001
+ /-------22
+ | | /--------- H003
+ | +--------------------------------------------21
+ | | \--------- H005
+--------23 |
+ | \------------------------------------------------------- H000
+ |
+ \---------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_20 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_20 --> node_19 8 1 1.000 2 ==> 1
+ node_19 --> node_17 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_17 --> node_16 10 1 0.500 2 --> 1
+ node_16 --> node_15 9 1 0.500 2 ==> 1
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_15 --> H006 11 1 0.333 2 ==> 1
+ node_16 --> H008 11 1 0.333 2 ==> 1
+ node_19 --> node_18 9 1 0.500 2 ==> 1
+ 10 1 0.500 2 --> 1
+ node_18 --> H007 12 1 0.333 2 ==> 1
+ node_18 --> H012 11 1 0.333 2 ==> 1
+ node_22 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 40:
+
+Branch lengths and linkages for tree #40
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 22 23 0 0 0
+ 20 22 2 2 2
+ 19 20 2 2 3
+ 17 19 2 2 2
+ 15 17 1 0 1
+H002 (1) 15 0 0 0
+H009 (12) 15 1 1 1
+H006 (13) 15 1 1 1
+ 16 17 0 0 1
+H008 (4) 16 1 1 1
+H014 (5) 16 1 1 1
+ 18 19 1 0 1
+H007 (3) 18 1 1 1
+H012 (11) 18 1 1 1
+H011 (14) 18 0 0 0
+H013 (6) 20 0 0 0
+H001 (7) 22 2 2 2
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (10) 21 1 1 1
+H000 (9) 22 0 0 0
+H010 (2) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.8095
+Rescaled consistency index (RC) = 0.4857
+
+ /---------- H002
+ |
+ /---------15---------- H009
+ | |
+ | \---------- H006
+ /--------17
+ | | /---------- H008
+ | \---------16
+ | \---------- H014
+ /---------19
+ | | /---------- H007
+ | | |
+ | \-------------------18---------- H012
+ /--------20 |
+ | | \---------- H011
+ | |
+ | \------------------------------------------ H013
+ |
+ +---------------------------------------------------- H001
+ /---------22
+ | | /---------- H003
+ | +----------------------------------------21
+ | | \---------- H005
+---------23 |
+ | \---------------------------------------------------- H000
+ |
+ \--------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_20 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_20 --> node_19 8 1 1.000 2 ==> 1
+ 10 1 0.500 2 ==> 1
+ node_19 --> node_17 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_17 --> node_15 9 1 0.500 2 --> 1
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_15 --> H006 11 1 0.333 2 ==> 1
+ node_16 --> H008 11 1 0.333 2 ==> 1
+ node_16 --> H014 10 1 0.500 1 ==> 2
+ node_19 --> node_18 9 1 0.500 2 --> 1
+ node_18 --> H007 12 1 0.333 2 ==> 1
+ node_18 --> H012 11 1 0.333 2 ==> 1
+ node_22 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 41:
+
+Branch lengths and linkages for tree #41
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 22 root 0 0 0
+ 21 22 0 0 0
+ 19 21 2 2 2
+ 18 19 2 2 2
+ 16 18 2 2 2
+ 15 16 1 1 1
+H002 (1) 15 0 0 0
+H009 (12) 15 1 1 1
+H006 (13) 15 1 1 1
+H008 (4) 16 1 1 1
+H014 (5) 16 1 1 1
+ 17 18 1 1 1
+H007 (3) 17 1 1 1
+H012 (11) 17 1 1 1
+H011 (14) 17 0 0 0
+H013 (6) 19 0 0 0
+H001 (7) 21 2 2 2
+ 20 21 1 1 1
+H003 (8) 20 1 1 1
+H005 (10) 20 1 1 1
+H000 (9) 21 0 0 0
+H010 (2) 22 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.8095
+Rescaled consistency index (RC) = 0.4857
+
+ /---------- H002
+ |
+ /---------15---------- H009
+ | |
+ | \---------- H006
+ /--------16
+ | +--------------------- H008
+ | |
+ | \--------------------- H014
+ /---------18
+ | | /---------- H007
+ | | |
+ | \-------------------17---------- H012
+ /--------19 |
+ | | \---------- H011
+ | |
+ | \------------------------------------------ H013
+ |
+ +---------------------------------------------------- H001
+ /---------21
+ | | /---------- H003
+ | +----------------------------------------20
+ | | \---------- H005
+---------22 |
+ | \---------------------------------------------------- H000
+ |
+ \--------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_19 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_19 --> node_18 8 1 1.000 2 ==> 1
+ 10 1 0.500 2 ==> 1
+ node_18 --> node_16 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_16 --> node_15 9 1 0.500 2 ==> 1
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_15 --> H006 11 1 0.333 2 ==> 1
+ node_16 --> H008 11 1 0.333 2 ==> 1
+ node_16 --> H014 10 1 0.500 1 ==> 2
+ node_18 --> node_17 9 1 0.500 2 ==> 1
+ node_17 --> H007 12 1 0.333 2 ==> 1
+ node_17 --> H012 11 1 0.333 2 ==> 1
+ node_21 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_21 --> node_20 3 1 1.000 2 ==> 1
+ node_20 --> H003 4 1 1.000 2 ==> 1
+ node_20 --> H005 12 1 0.333 2 ==> 1
+ node_22 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 42:
+
+Branch lengths and linkages for tree #42
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 22 root 0 0 0
+ 21 22 0 0 0
+ 19 21 2 2 2
+ 18 19 3 3 3
+ 17 18 1 1 1
+ 16 17 2 2 2
+ 15 16 1 1 1
+H002 (1) 15 0 0 0
+H014 (5) 15 2 2 2
+H009 (12) 15 1 1 1
+H008 (4) 16 1 1 1
+H006 (13) 16 0 0 0
+H012 (11) 17 0 0 0
+H007 (3) 18 1 1 1
+H011 (14) 18 0 0 0
+H013 (6) 19 0 0 0
+H001 (7) 21 2 2 2
+ 20 21 1 1 1
+H003 (8) 20 1 1 1
+H005 (10) 20 1 1 1
+H000 (9) 21 0 0 0
+H010 (2) 22 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.8095
+Rescaled consistency index (RC) = 0.4857
+
+ /--------- H002
+ |
+ /-------15--------- H014
+ | |
+ | \--------- H009
+ /-------16
+ | +------------------ H008
+ | |
+ /--------17 \------------------ H006
+ | |
+ | \--------------------------- H012
+ /-------18
+ | +------------------------------------- H007
+ | |
+ /-------19 \------------------------------------- H011
+ | |
+ | \---------------------------------------------- H013
+ |
+ +------------------------------------------------------- H001
+ /-------21
+ | | /--------- H003
+ | +--------------------------------------------20
+ | | \--------- H005
+--------22 |
+ | \------------------------------------------------------- H000
+ |
+ \---------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_19 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_19 --> node_18 8 1 1.000 2 ==> 1
+ 9 1 0.333 2 ==> 1
+ 10 1 0.500 2 ==> 1
+ node_18 --> node_17 11 1 0.500 2 ==> 1
+ node_17 --> node_16 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_16 --> node_15 11 1 0.500 1 ==> 2
+ node_15 --> H014 9 1 0.333 1 ==> 2
+ 10 1 0.500 1 ==> 2
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_16 --> H008 9 1 0.333 1 ==> 2
+ node_18 --> H007 12 1 0.333 2 ==> 1
+ node_21 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_21 --> node_20 3 1 1.000 2 ==> 1
+ node_20 --> H003 4 1 1.000 2 ==> 1
+ node_20 --> H005 12 1 0.333 2 ==> 1
+ node_22 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 43:
+
+Branch lengths and linkages for tree #43
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 25 root 0 0 0
+ 24 25 0 0 0
+ 22 24 2 2 2
+ 21 22 3 3 3
+ 20 21 1 1 2
+ 19 20 1 1 1
+ 18 19 0 0 1
+ 15 18 0 0 1
+H002 (1) 15 0 0 0
+H009 (12) 15 1 1 1
+ 17 18 2 2 2
+ 16 17 0 0 1
+H007 (3) 16 1 1 1
+H011 (14) 16 0 0 0
+H012 (11) 17 1 0 1
+H006 (13) 19 1 0 1
+H008 (4) 20 1 0 1
+H014 (5) 21 0 0 0
+H013 (6) 22 0 0 0
+H001 (7) 24 2 2 2
+ 23 24 1 1 1
+H003 (8) 23 1 1 1
+H005 (10) 23 1 1 1
+H000 (9) 24 0 0 0
+H010 (2) 25 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.8095
+Rescaled consistency index (RC) = 0.4857
+
+ /------- H002
+ /-------------15
+ | \------- H009
+ |
+ /-----18 /------- H007
+ | | /------16
+ | | | \------- H011
+ /-----19 \-----17
+ | | \--------------- H012
+ | |
+ /------20 \----------------------------- H006
+ | |
+ /-----21 \------------------------------------ H008
+ | |
+ /-----22 \-------------------------------------------- H014
+ | |
+ | \--------------------------------------------------- H013
+ |
+ +---------------------------------------------------------- H001
+ /------24
+ | | /------- H003
+ | +-------------------------------------------------23
+ | | \------- H005
+------25 |
+ | \---------------------------------------------------------- H000
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_24 --> node_22 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_22 --> node_21 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_21 --> node_20 10 1 1.000 2 ==> 1
+ node_20 --> node_19 9 1 1.000 2 ==> 1
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_18 --> node_17 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 ==> 1
+ node_17 --> H012 11 1 0.333 2 --> 1
+ node_19 --> H006 11 1 0.333 2 --> 1
+ node_20 --> H008 11 1 0.333 2 --> 1
+ node_24 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_24 --> node_23 3 1 1.000 2 ==> 1
+ node_23 --> H003 4 1 1.000 2 ==> 1
+ node_23 --> H005 12 1 0.333 2 ==> 1
+ node_25 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 44:
+
+Branch lengths and linkages for tree #44
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 25 root 0 0 0
+ 24 25 0 0 0
+ 22 24 2 2 2
+ 21 22 3 3 3
+ 20 21 1 1 2
+ 15 20 1 0 1
+H002 (1) 15 0 0 0
+H009 (12) 15 1 1 1
+ 19 20 1 1 1
+ 18 19 1 0 1
+ 17 18 2 2 2
+ 16 17 1 1 1
+H007 (3) 16 1 1 1
+H011 (14) 16 0 0 0
+H012 (11) 17 0 0 0
+H006 (13) 18 0 0 0
+H008 (4) 19 0 0 1
+H014 (5) 21 0 0 0
+H013 (6) 22 0 0 0
+H001 (7) 24 2 2 2
+ 23 24 1 1 1
+H003 (8) 23 1 1 1
+H005 (10) 23 1 1 1
+H000 (9) 24 0 0 0
+H010 (2) 25 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.8095
+Rescaled consistency index (RC) = 0.4857
+
+ /------- H002
+ /---------------------------15
+ | \------- H009
+ |
+ | /------- H007
+ | /------16
+ /------20 | \------- H011
+ | | /-----17
+ | | | \--------------- H012
+ | | /-----18
+ /-----21 | | \---------------------- H006
+ | | \-----19
+ | | \----------------------------- H008
+ /-----22 |
+ | | \-------------------------------------------- H014
+ | |
+ | \--------------------------------------------------- H013
+ |
+ +---------------------------------------------------------- H001
+ /------24
+ | | /------- H003
+ | +-------------------------------------------------23
+ | | \------- H005
+------25 |
+ | \---------------------------------------------------------- H000
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_24 --> node_22 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_22 --> node_21 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_21 --> node_20 10 1 1.000 2 ==> 1
+ node_20 --> node_15 9 1 0.500 2 --> 1
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_20 --> node_19 11 1 0.500 2 ==> 1
+ node_19 --> node_18 9 1 0.500 2 --> 1
+ node_18 --> node_17 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_17 --> node_16 11 1 0.500 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 ==> 1
+ node_24 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_24 --> node_23 3 1 1.000 2 ==> 1
+ node_23 --> H003 4 1 1.000 2 ==> 1
+ node_23 --> H005 12 1 0.333 2 ==> 1
+ node_25 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 45:
+
+Branch lengths and linkages for tree #45
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 25 root 0 0 0
+ 24 25 0 0 0
+ 22 24 2 2 2
+ 21 22 3 3 3
+ 20 21 1 1 2
+ 19 20 1 1 1
+ 15 19 0 0 1
+H002 (1) 15 0 0 0
+H009 (12) 15 1 1 1
+ 18 19 0 0 1
+ 17 18 2 2 2
+ 16 17 0 0 1
+H007 (3) 16 1 1 1
+H011 (14) 16 0 0 0
+H012 (11) 17 1 0 1
+H006 (13) 18 1 0 1
+H008 (4) 20 1 0 1
+H014 (5) 21 0 0 0
+H013 (6) 22 0 0 0
+H001 (7) 24 2 2 2
+ 23 24 1 1 1
+H003 (8) 23 1 1 1
+H005 (10) 23 1 1 1
+H000 (9) 24 0 0 0
+H010 (2) 25 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.8095
+Rescaled consistency index (RC) = 0.4857
+
+ /------- H002
+ /--------------------15
+ | \------- H009
+ |
+ | /------- H007
+ /-----19 /------16
+ | | | \------- H011
+ | | /-----17
+ | | | \--------------- H012
+ /------20 \-----18
+ | | \---------------------- H006
+ | |
+ /-----21 \------------------------------------ H008
+ | |
+ /-----22 \-------------------------------------------- H014
+ | |
+ | \--------------------------------------------------- H013
+ |
+ +---------------------------------------------------------- H001
+ /------24
+ | | /------- H003
+ | +-------------------------------------------------23
+ | | \------- H005
+------25 |
+ | \---------------------------------------------------------- H000
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_24 --> node_22 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_22 --> node_21 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_21 --> node_20 10 1 1.000 2 ==> 1
+ node_20 --> node_19 9 1 1.000 2 ==> 1
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_18 --> node_17 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 ==> 1
+ node_17 --> H012 11 1 0.333 2 --> 1
+ node_18 --> H006 11 1 0.333 2 --> 1
+ node_20 --> H008 11 1 0.333 2 --> 1
+ node_24 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_24 --> node_23 3 1 1.000 2 ==> 1
+ node_23 --> H003 4 1 1.000 2 ==> 1
+ node_23 --> H005 12 1 0.333 2 ==> 1
+ node_25 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 46:
+
+Branch lengths and linkages for tree #46
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 24 root 0 0 0
+ 23 24 0 0 0
+ 21 23 2 2 2
+ 20 21 3 3 3
+ 19 20 2 2 2
+H002 (1) 19 0 0 0
+ 18 19 0 0 1
+ 16 18 2 2 2
+ 15 16 0 0 1
+H007 (3) 15 1 1 1
+H011 (14) 15 0 0 0
+H012 (11) 16 1 0 1
+ 17 18 1 0 1
+H008 (4) 17 1 1 1
+H006 (13) 17 0 0 0
+H009 (12) 19 1 1 1
+H014 (5) 20 0 0 0
+H001 (7) 21 0 0 0
+H013 (6) 23 2 2 2
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (10) 22 1 1 1
+H000 (9) 23 0 0 0
+H010 (2) 24 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.8095
+Rescaled consistency index (RC) = 0.4857
+
+ /-------------------------------- H002
+ |
+ | /-------- H007
+ | /------15
+ | | \-------- H011
+ | /------16
+ /-------19 | \---------------- H012
+ | +------18
+ | | | /-------- H008
+ | | \--------------17
+ /------20 | \-------- H006
+ | | |
+ | | \-------------------------------- H009
+ /------21 |
+ | | \----------------------------------------- H014
+ | |
+ | \------------------------------------------------- H001
+ |
+ +--------------------------------------------------------- H013
+ /------23
+ | | /-------- H003
+ | +-----------------------------------------------22
+ | | \-------- H005
+-------24 |
+ | \--------------------------------------------------------- H000
+ |
+ \----------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_21 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_21 --> node_20 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_20 --> node_19 9 1 0.500 2 ==> 1
+ 10 1 1.000 2 ==> 1
+ node_18 --> node_16 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ node_16 --> H012 11 1 0.500 2 --> 1
+ node_18 --> node_17 11 1 0.500 2 --> 1
+ node_17 --> H008 9 1 0.500 1 ==> 2
+ node_19 --> H009 12 1 0.333 2 ==> 1
+ node_23 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+ node_24 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 47:
+
+Branch lengths and linkages for tree #47
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 25 root 0 0 0
+ 24 25 0 0 0
+ 22 24 0 0 2
+ 21 22 2 2 2
+ 20 21 3 1 3
+ 19 20 2 2 2
+H002 (1) 19 0 0 0
+ 18 19 0 0 1
+ 16 18 2 2 2
+ 15 16 0 0 1
+H007 (3) 15 1 1 1
+H011 (14) 15 0 0 0
+H012 (11) 16 1 0 1
+ 17 18 1 0 1
+H008 (4) 17 1 1 1
+H006 (13) 17 0 0 0
+H009 (12) 19 1 1 1
+H014 (5) 20 0 0 0
+H001 (7) 21 0 0 2
+H013 (6) 22 2 0 2
+ 23 24 1 1 1
+H003 (8) 23 1 1 1
+H005 (10) 23 1 1 1
+H000 (9) 24 0 0 0
+H010 (2) 25 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.8095
+Rescaled consistency index (RC) = 0.4857
+
+ /----------------------------- H002
+ |
+ | /------- H007
+ | /------15
+ | | \------- H011
+ | /-----16
+ /-----19 | \--------------- H012
+ | +-----18
+ | | | /------- H008
+ | | \-------------17
+ /------20 | \------- H006
+ | | |
+ | | \----------------------------- H009
+ /-----21 |
+ | | \------------------------------------ H014
+ | |
+ /-----22 \-------------------------------------------- H001
+ | |
+ | \--------------------------------------------------- H013
+ |
+ /------24 /------- H003
+ | +-------------------------------------------------23
+ | | \------- H005
+------25 |
+ | \---------------------------------------------------------- H000
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_21 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_21 --> node_20 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_20 --> node_19 9 1 0.500 2 ==> 1
+ 10 1 1.000 2 ==> 1
+ node_18 --> node_16 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ node_16 --> H012 11 1 0.500 2 --> 1
+ node_18 --> node_17 11 1 0.500 2 --> 1
+ node_17 --> H008 9 1 0.500 1 ==> 2
+ node_19 --> H009 12 1 0.333 2 ==> 1
+ node_22 --> H013 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ node_24 --> node_23 3 1 1.000 2 ==> 1
+ node_23 --> H003 4 1 1.000 2 ==> 1
+ node_23 --> H005 12 1 0.333 2 ==> 1
+ node_25 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 48:
+
+Branch lengths and linkages for tree #48
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 22 23 0 0 0
+ 20 22 2 2 2
+ 19 20 3 3 3
+ 18 19 1 1 2
+ 17 18 1 1 1
+ 16 17 0 0 1
+H002 (1) 16 0 0 0
+ 15 16 2 2 2
+H007 (3) 15 1 1 1
+H012 (11) 15 1 1 1
+H011 (14) 15 0 0 0
+H009 (12) 16 1 1 1
+H006 (13) 17 1 0 1
+H008 (4) 18 1 0 1
+H014 (5) 19 0 0 0
+H013 (6) 20 0 0 0
+H001 (7) 22 2 2 2
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (10) 21 1 1 1
+H000 (9) 22 0 0 0
+H010 (2) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.8095
+Rescaled consistency index (RC) = 0.4857
+
+ /---------------- H002
+ |
+ | /-------- H007
+ | |
+ /------16------15-------- H012
+ | | |
+ | | \-------- H011
+ /------17 |
+ | | \---------------- H009
+ | |
+ /-------18 \------------------------ H006
+ | |
+ /------19 \-------------------------------- H008
+ | |
+ /------20 \----------------------------------------- H014
+ | |
+ | \------------------------------------------------- H013
+ |
+ +--------------------------------------------------------- H001
+ /------22
+ | | /-------- H003
+ | +-----------------------------------------------21
+ | | \-------- H005
+-------23 |
+ | \--------------------------------------------------------- H000
+ |
+ \----------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_20 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_20 --> node_19 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_19 --> node_18 10 1 1.000 2 ==> 1
+ node_18 --> node_17 9 1 1.000 2 ==> 1
+ node_16 --> node_15 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ node_15 --> H012 11 1 0.333 2 ==> 1
+ node_16 --> H009 12 1 0.333 2 ==> 1
+ node_17 --> H006 11 1 0.333 2 --> 1
+ node_18 --> H008 11 1 0.333 2 --> 1
+ node_22 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 49:
+
+Branch lengths and linkages for tree #49
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 25 root 0 0 0
+ 24 25 0 0 0
+ 22 24 2 2 2
+ 21 22 3 3 3
+ 20 21 1 1 2
+ 18 20 1 0 1
+H002 (1) 18 0 0 0
+ 17 18 0 0 1
+ 16 17 2 2 2
+H007 (3) 16 1 0 1
+ 15 16 0 0 1
+H012 (11) 15 1 1 1
+H011 (14) 15 0 0 0
+H009 (12) 17 1 0 1
+ 19 20 1 1 1
+H008 (4) 19 0 0 1
+H006 (13) 19 1 0 1
+H014 (5) 21 0 0 0
+H001 (7) 22 0 0 0
+H013 (6) 24 2 2 2
+ 23 24 1 1 1
+H003 (8) 23 1 1 1
+H005 (10) 23 1 1 1
+H000 (9) 24 0 0 0
+H010 (2) 25 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.8095
+Rescaled consistency index (RC) = 0.4857
+
+ /----------------------------- H002
+ |
+ | /--------------- H007
+ /-----18 |
+ | | /-----16 /------- H012
+ | | | \------15
+ | \-----17 \------- H011
+ /------20 |
+ | | \---------------------- H009
+ | |
+ | | /------- H008
+ /-----21 \---------------------------19
+ | | \------- H006
+ | |
+ /-----22 \-------------------------------------------- H014
+ | |
+ | \--------------------------------------------------- H001
+ |
+ +---------------------------------------------------------- H013
+ /------24
+ | | /------- H003
+ | +-------------------------------------------------23
+ | | \------- H005
+------25 |
+ | \---------------------------------------------------------- H000
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_24 --> node_22 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_22 --> node_21 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_21 --> node_20 10 1 1.000 2 ==> 1
+ node_20 --> node_18 9 1 0.500 2 --> 1
+ node_17 --> node_16 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 --> 1
+ node_15 --> H012 11 1 0.500 2 ==> 1
+ node_17 --> H009 12 1 0.333 2 --> 1
+ node_20 --> node_19 11 1 0.500 2 ==> 1
+ node_19 --> H006 9 1 0.500 2 --> 1
+ node_24 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ node_24 --> node_23 3 1 1.000 2 ==> 1
+ node_23 --> H003 4 1 1.000 2 ==> 1
+ node_23 --> H005 12 1 0.333 2 ==> 1
+ node_25 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 50:
+
+Branch lengths and linkages for tree #50
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 24 root 0 0 0
+ 23 24 0 0 0
+ 21 23 2 2 2
+ 20 21 3 3 3
+ 19 20 0 0 1
+ 18 19 2 2 2
+ 17 18 0 0 1
+H002 (1) 17 0 0 0
+ 16 17 0 0 1
+ 15 16 1 1 1
+H008 (4) 15 1 0 1
+H006 (13) 15 0 0 1
+H014 (5) 16 2 1 2
+H009 (12) 18 1 0 1
+H007 (3) 19 1 0 1
+H012 (11) 20 1 1 1
+H011 (14) 20 0 0 0
+H013 (6) 21 0 0 0
+H001 (7) 23 2 2 2
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (10) 22 1 1 1
+H000 (9) 23 0 0 0
+H010 (2) 24 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.8095
+Rescaled consistency index (RC) = 0.4857
+
+ /---------------------- H002
+ |
+ | /------- H008
+ /-----17 /------15
+ | | | \------- H006
+ | \-----16
+ /-----18 \--------------- H014
+ | |
+ /------19 \----------------------------- H009
+ | |
+ | \------------------------------------ H007
+ /-----20
+ | +-------------------------------------------- H012
+ | |
+ /-----21 \-------------------------------------------- H011
+ | |
+ | \--------------------------------------------------- H013
+ |
+ +---------------------------------------------------------- H001
+ /------23
+ | | /------- H003
+ | +-------------------------------------------------22
+ | | \------- H005
+------24 |
+ | \---------------------------------------------------------- H000
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_21 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_21 --> node_20 8 1 1.000 2 ==> 1
+ 9 1 0.333 2 ==> 1
+ 10 1 0.500 2 ==> 1
+ node_19 --> node_18 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_16 --> node_15 11 1 0.500 2 ==> 1
+ node_15 --> H008 9 1 0.333 1 --> 2
+ node_16 --> H014 9 1 0.333 1 --> 2
+ 10 1 0.500 1 ==> 2
+ node_18 --> H009 12 1 0.333 2 --> 1
+ node_19 --> H007 12 1 0.333 2 --> 1
+ node_20 --> H012 11 1 0.500 2 ==> 1
+ node_23 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+ node_24 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 51:
+
+Branch lengths and linkages for tree #51
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 26 root 0 0 0
+ 25 26 0 0 0
+ 23 25 0 0 2
+ 22 23 2 2 2
+ 21 22 3 1 3
+ 20 21 1 1 2
+ 18 20 1 0 1
+H002 (1) 18 0 0 0
+ 17 18 0 0 1
+ 16 17 2 2 2
+H007 (3) 16 1 0 1
+ 15 16 0 0 1
+H012 (11) 15 1 1 1
+H011 (14) 15 0 0 0
+H009 (12) 17 1 0 1
+ 19 20 1 1 1
+H008 (4) 19 0 0 1
+H006 (13) 19 1 0 1
+H014 (5) 21 0 0 0
+H001 (7) 22 0 0 2
+H013 (6) 23 2 0 2
+ 24 25 1 1 1
+H003 (8) 24 1 1 1
+H005 (10) 24 1 1 1
+H000 (9) 25 0 0 0
+H010 (2) 26 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.8095
+Rescaled consistency index (RC) = 0.4857
+
+ /--------------------------- H002
+ |
+ | /------------- H007
+ /----18 |
+ | | /-----16 /------- H012
+ | | | \----15
+ | \-----17 \------- H011
+ /-----20 |
+ | | \-------------------- H009
+ | |
+ | | /------- H008
+ /----21 \------------------------19
+ | | \------- H006
+ | |
+ /-----22 \---------------------------------------- H014
+ | |
+ /-----23 \---------------------------------------------- H001
+ | |
+ | \----------------------------------------------------- H013
+ |
+ /----25 /------- H003
+ | +---------------------------------------------------24
+ | | \------- H005
+------26 |
+ | \------------------------------------------------------------ H000
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_22 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_22 --> node_21 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_21 --> node_20 10 1 1.000 2 ==> 1
+ node_20 --> node_18 9 1 0.500 2 --> 1
+ node_17 --> node_16 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 --> 1
+ node_15 --> H012 11 1 0.500 2 ==> 1
+ node_17 --> H009 12 1 0.333 2 --> 1
+ node_20 --> node_19 11 1 0.500 2 ==> 1
+ node_19 --> H006 9 1 0.500 2 --> 1
+ node_23 --> H013 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ node_25 --> node_24 3 1 1.000 2 ==> 1
+ node_24 --> H003 4 1 1.000 2 ==> 1
+ node_24 --> H005 12 1 0.333 2 ==> 1
+ node_26 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 52:
+
+Branch lengths and linkages for tree #52
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 24 root 0 0 0
+ 23 24 0 0 0
+ 21 23 2 2 2
+ 20 21 3 3 3
+ 19 20 0 0 1
+ 18 19 2 2 2
+ 17 18 0 0 1
+H002 (1) 17 0 0 0
+ 16 17 0 0 1
+ 15 16 1 1 1
+H008 (4) 15 1 0 1
+H014 (5) 15 1 1 2
+H006 (13) 16 1 0 1
+H009 (12) 18 1 0 1
+H007 (3) 19 1 0 1
+H012 (11) 20 1 1 1
+H011 (14) 20 0 0 0
+H013 (6) 21 0 0 0
+H001 (7) 23 2 2 2
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (10) 22 1 1 1
+H000 (9) 23 0 0 0
+H010 (2) 24 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.8095
+Rescaled consistency index (RC) = 0.4857
+
+ /---------------------- H002
+ |
+ | /------- H008
+ /-----17 /------15
+ | | | \------- H014
+ | \-----16
+ /-----18 \--------------- H006
+ | |
+ /------19 \----------------------------- H009
+ | |
+ | \------------------------------------ H007
+ /-----20
+ | +-------------------------------------------- H012
+ | |
+ /-----21 \-------------------------------------------- H011
+ | |
+ | \--------------------------------------------------- H013
+ |
+ +---------------------------------------------------------- H001
+ /------23
+ | | /------- H003
+ | +-------------------------------------------------22
+ | | \------- H005
+------24 |
+ | \---------------------------------------------------------- H000
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_21 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_21 --> node_20 8 1 1.000 2 ==> 1
+ 9 1 0.500 2 ==> 1
+ 10 1 0.500 2 ==> 1
+ node_19 --> node_18 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_16 --> node_15 9 1 0.500 1 ==> 2
+ node_15 --> H008 11 1 0.333 2 --> 1
+ node_15 --> H014 10 1 0.500 1 ==> 2
+ node_16 --> H006 11 1 0.333 2 --> 1
+ node_18 --> H009 12 1 0.333 2 --> 1
+ node_19 --> H007 12 1 0.333 2 --> 1
+ node_20 --> H012 11 1 0.333 2 ==> 1
+ node_23 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+ node_24 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 53:
+
+Branch lengths and linkages for tree #53
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 25 root 0 0 0
+ 24 25 0 0 0
+ 22 24 2 2 2
+ 21 22 3 3 3
+ 20 21 1 1 2
+ 19 20 1 1 1
+ 18 19 0 0 1
+H002 (1) 18 0 0 0
+ 17 18 0 0 1
+ 16 17 2 2 2
+H007 (3) 16 1 0 1
+ 15 16 0 0 1
+H012 (11) 15 1 1 1
+H011 (14) 15 0 0 0
+H009 (12) 17 1 0 1
+H006 (13) 19 1 0 1
+H008 (4) 20 1 0 1
+H014 (5) 21 0 0 0
+H001 (7) 22 0 0 0
+H013 (6) 24 2 2 2
+ 23 24 1 1 1
+H003 (8) 23 1 1 1
+H005 (10) 23 1 1 1
+H000 (9) 24 0 0 0
+H010 (2) 25 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.8095
+Rescaled consistency index (RC) = 0.4857
+
+ /--------------------------- H002
+ |
+ | /------------- H007
+ /----18 |
+ | | /-----16 /------- H012
+ | | | \----15
+ | \-----17 \------- H011
+ /-----19 |
+ | | \-------------------- H009
+ | |
+ /----20 \--------------------------------- H006
+ | |
+ /-----21 \---------------------------------------- H008
+ | |
+ /-----22 \---------------------------------------------- H014
+ | |
+ | \----------------------------------------------------- H001
+ |
+ +------------------------------------------------------------ H013
+ /----24
+ | | /------- H003
+ | +---------------------------------------------------23
+ | | \------- H005
+------25 |
+ | \------------------------------------------------------------ H000
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_24 --> node_22 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_22 --> node_21 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_21 --> node_20 10 1 1.000 2 ==> 1
+ node_20 --> node_19 9 1 1.000 2 ==> 1
+ node_17 --> node_16 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 --> 1
+ node_15 --> H012 11 1 0.333 2 ==> 1
+ node_17 --> H009 12 1 0.333 2 --> 1
+ node_19 --> H006 11 1 0.333 2 --> 1
+ node_20 --> H008 11 1 0.333 2 --> 1
+ node_24 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ node_24 --> node_23 3 1 1.000 2 ==> 1
+ node_23 --> H003 4 1 1.000 2 ==> 1
+ node_23 --> H005 12 1 0.333 2 ==> 1
+ node_25 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 54:
+
+Branch lengths and linkages for tree #54
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 24 root 0 0 0
+ 23 24 0 0 0
+ 21 23 2 2 2
+ 20 21 3 3 3
+ 19 20 1 1 2
+ 18 19 1 1 1
+ 15 18 0 0 1
+H002 (1) 15 0 0 0
+H009 (12) 15 1 1 1
+ 17 18 2 2 2
+ 16 17 0 0 1
+H007 (3) 16 1 1 1
+H011 (14) 16 0 0 0
+H012 (11) 17 1 0 1
+H006 (13) 18 1 0 1
+H008 (4) 19 1 0 1
+H014 (5) 20 0 0 0
+H013 (6) 21 0 0 0
+H001 (7) 23 2 2 2
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (10) 22 1 1 1
+H000 (9) 23 0 0 0
+H010 (2) 24 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.8095
+Rescaled consistency index (RC) = 0.4857
+
+ /-------- H002
+ /--------------15
+ | \-------- H009
+ |
+ | /-------- H007
+ | /------16
+ /------18 | \-------- H011
+ | +------17
+ | | \---------------- H012
+ /-------19 |
+ | | \------------------------ H006
+ | |
+ /------20 \-------------------------------- H008
+ | |
+ /------21 \----------------------------------------- H014
+ | |
+ | \------------------------------------------------- H013
+ |
+ +--------------------------------------------------------- H001
+ /------23
+ | | /-------- H003
+ | +-----------------------------------------------22
+ | | \-------- H005
+-------24 |
+ | \--------------------------------------------------------- H000
+ |
+ \----------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_21 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_21 --> node_20 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_20 --> node_19 10 1 1.000 2 ==> 1
+ node_19 --> node_18 9 1 1.000 2 ==> 1
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_18 --> node_17 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 ==> 1
+ node_17 --> H012 11 1 0.333 2 --> 1
+ node_18 --> H006 11 1 0.333 2 --> 1
+ node_19 --> H008 11 1 0.333 2 --> 1
+ node_23 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+ node_24 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 55:
+
+Branch lengths and linkages for tree #55
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 26 root 0 0 0
+ 25 26 0 0 0
+ 23 25 0 0 2
+ 22 23 2 2 2
+ 21 22 3 1 3
+ 20 21 1 1 2
+ 19 20 1 1 1
+ 18 19 0 0 1
+H002 (1) 18 0 0 0
+ 17 18 0 0 1
+ 16 17 2 2 2
+H007 (3) 16 1 0 1
+ 15 16 0 0 1
+H012 (11) 15 1 1 1
+H011 (14) 15 0 0 0
+H009 (12) 17 1 0 1
+H006 (13) 19 1 0 1
+H008 (4) 20 1 0 1
+H014 (5) 21 0 0 0
+H013 (6) 22 0 0 2
+H001 (7) 23 2 0 2
+ 24 25 1 1 1
+H003 (8) 24 1 1 1
+H005 (10) 24 1 1 1
+H000 (9) 25 0 0 0
+H010 (2) 26 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.8095
+Rescaled consistency index (RC) = 0.4857
+
+ /------------------------ H002
+ |
+ | /------------ H007
+ /----18 |
+ | | /----16 /------ H012
+ | | | \----15
+ | \----17 \------ H011
+ /----19 |
+ | | \------------------ H009
+ | |
+ /-----20 \------------------------------ H006
+ | |
+ /----21 \------------------------------------ H008
+ | |
+ /----22 \------------------------------------------- H014
+ | |
+ /----23 \------------------------------------------------- H013
+ | |
+ | \------------------------------------------------------- H001
+ |
+ /----25 /------ H003
+ | +-----------------------------------------------------24
+ | | \------ H005
+-----26 |
+ | \------------------------------------------------------------- H000
+ |
+ \------------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_22 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_22 --> node_21 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_21 --> node_20 10 1 1.000 2 ==> 1
+ node_20 --> node_19 9 1 1.000 2 ==> 1
+ node_17 --> node_16 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 --> 1
+ node_15 --> H012 11 1 0.333 2 ==> 1
+ node_17 --> H009 12 1 0.333 2 --> 1
+ node_19 --> H006 11 1 0.333 2 --> 1
+ node_20 --> H008 11 1 0.333 2 --> 1
+ node_23 --> H001 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ node_25 --> node_24 3 1 1.000 2 ==> 1
+ node_24 --> H003 4 1 1.000 2 ==> 1
+ node_24 --> H005 12 1 0.333 2 ==> 1
+ node_26 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 56:
+
+Branch lengths and linkages for tree #56
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 26 root 0 0 0
+ 25 26 0 0 0
+ 23 25 0 0 2
+ 22 23 2 2 2
+ 21 22 3 1 3
+ 20 21 1 1 2
+ 19 20 1 1 1
+ 18 19 0 0 1
+H002 (1) 18 0 0 0
+ 17 18 0 0 1
+ 16 17 2 2 2
+H007 (3) 16 1 0 1
+ 15 16 0 0 1
+H012 (11) 15 1 1 1
+H011 (14) 15 0 0 0
+H009 (12) 17 1 0 1
+H006 (13) 19 1 0 1
+H008 (4) 20 1 0 1
+H014 (5) 21 0 0 0
+H001 (7) 22 0 0 2
+H013 (6) 23 2 0 2
+ 24 25 1 1 1
+H003 (8) 24 1 1 1
+H005 (10) 24 1 1 1
+H000 (9) 25 0 0 0
+H010 (2) 26 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.8095
+Rescaled consistency index (RC) = 0.4857
+
+ /------------------------ H002
+ |
+ | /------------ H007
+ /----18 |
+ | | /----16 /------ H012
+ | | | \----15
+ | \----17 \------ H011
+ /----19 |
+ | | \------------------ H009
+ | |
+ /-----20 \------------------------------ H006
+ | |
+ /----21 \------------------------------------ H008
+ | |
+ /----22 \------------------------------------------- H014
+ | |
+ /----23 \------------------------------------------------- H001
+ | |
+ | \------------------------------------------------------- H013
+ |
+ /----25 /------ H003
+ | +-----------------------------------------------------24
+ | | \------ H005
+-----26 |
+ | \------------------------------------------------------------- H000
+ |
+ \------------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_22 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_22 --> node_21 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_21 --> node_20 10 1 1.000 2 ==> 1
+ node_20 --> node_19 9 1 1.000 2 ==> 1
+ node_17 --> node_16 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 --> 1
+ node_15 --> H012 11 1 0.333 2 ==> 1
+ node_17 --> H009 12 1 0.333 2 --> 1
+ node_19 --> H006 11 1 0.333 2 --> 1
+ node_20 --> H008 11 1 0.333 2 --> 1
+ node_23 --> H013 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ node_25 --> node_24 3 1 1.000 2 ==> 1
+ node_24 --> H003 4 1 1.000 2 ==> 1
+ node_24 --> H005 12 1 0.333 2 ==> 1
+ node_26 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 57:
+
+Branch lengths and linkages for tree #57
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 24 root 0 0 0
+ 23 24 0 0 0
+ 21 23 2 2 2
+ 20 21 3 3 3
+ 19 20 1 1 1
+ 18 19 2 2 2
+ 17 18 0 0 1
+ 16 17 1 1 1
+ 15 16 0 0 1
+H002 (1) 15 0 0 0
+H009 (12) 15 1 1 1
+H014 (5) 16 2 1 2
+H008 (4) 17 1 0 1
+H006 (13) 18 0 0 0
+H012 (11) 19 0 0 0
+H007 (3) 20 1 1 1
+H011 (14) 20 0 0 0
+H013 (6) 21 0 0 0
+H001 (7) 23 2 2 2
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (10) 22 1 1 1
+H000 (9) 23 0 0 0
+H010 (2) 24 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.8095
+Rescaled consistency index (RC) = 0.4857
+
+ /------- H002
+ /------15
+ | \------- H009
+ /-----16
+ | \--------------- H014
+ /-----17
+ | \---------------------- H008
+ /-----18
+ | \----------------------------- H006
+ /------19
+ | \------------------------------------ H012
+ |
+ /-----20-------------------------------------------- H007
+ | |
+ /-----21 \-------------------------------------------- H011
+ | |
+ | \--------------------------------------------------- H013
+ |
+ +---------------------------------------------------------- H001
+ /------23
+ | | /------- H003
+ | +-------------------------------------------------22
+ | | \------- H005
+------24 |
+ | \---------------------------------------------------------- H000
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_21 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_21 --> node_20 8 1 1.000 2 ==> 1
+ 9 1 0.333 2 ==> 1
+ 10 1 0.500 2 ==> 1
+ node_20 --> node_19 11 1 0.500 2 ==> 1
+ node_19 --> node_18 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_17 --> node_16 11 1 0.500 1 ==> 2
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_16 --> H014 9 1 0.333 1 --> 2
+ 10 1 0.500 1 ==> 2
+ node_17 --> H008 9 1 0.333 1 --> 2
+ node_20 --> H007 12 1 0.333 2 ==> 1
+ node_23 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+ node_24 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 58:
+
+Branch lengths and linkages for tree #58
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 21 root 0 0 0
+ 20 21 0 0 0
+ 18 20 2 2 2
+ 17 18 3 3 3
+ 16 17 2 2 2
+H002 (1) 16 0 0 0
+ 15 16 1 1 1
+H008 (4) 15 1 1 1
+H014 (5) 15 1 1 1
+H009 (12) 16 1 1 1
+H006 (13) 16 1 1 1
+H007 (3) 17 1 1 1
+H012 (11) 17 1 1 1
+H011 (14) 17 0 0 0
+H013 (6) 18 0 0 0
+H001 (7) 20 2 2 2
+ 19 20 1 1 1
+H003 (8) 19 1 1 1
+H005 (10) 19 1 1 1
+H000 (9) 20 0 0 0
+H010 (2) 21 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.8095
+Rescaled consistency index (RC) = 0.4857
+
+ /--------------------- H002
+ |
+ | /---------- H008
+ +---------15
+ /--------16 \---------- H014
+ | |
+ | +--------------------- H009
+ | |
+ | \--------------------- H006
+ /---------17
+ | +------------------------------- H007
+ | |
+ | +------------------------------- H012
+ /--------18 |
+ | | \------------------------------- H011
+ | |
+ | \------------------------------------------ H013
+ |
+ +---------------------------------------------------- H001
+ /---------20
+ | | /---------- H003
+ | +----------------------------------------19
+ | | \---------- H005
+---------21 |
+ | \---------------------------------------------------- H000
+ |
+ \--------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_20 --> node_18 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_18 --> node_17 8 1 1.000 2 ==> 1
+ 9 1 0.500 2 ==> 1
+ 10 1 0.500 2 ==> 1
+ node_17 --> node_16 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_16 --> node_15 9 1 0.500 1 ==> 2
+ node_15 --> H008 11 1 0.333 2 ==> 1
+ node_15 --> H014 10 1 0.500 1 ==> 2
+ node_16 --> H009 12 1 0.333 2 ==> 1
+ node_16 --> H006 11 1 0.333 2 ==> 1
+ node_17 --> H007 12 1 0.333 2 ==> 1
+ node_17 --> H012 11 1 0.333 2 ==> 1
+ node_20 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_20 --> node_19 3 1 1.000 2 ==> 1
+ node_19 --> H003 4 1 1.000 2 ==> 1
+ node_19 --> H005 12 1 0.333 2 ==> 1
+ node_21 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 59:
+
+Branch lengths and linkages for tree #59
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 22 23 0 0 0
+ 20 22 2 2 2
+ 19 20 3 3 3
+ 18 19 1 1 2
+ 16 18 1 0 1
+H002 (1) 16 0 0 0
+ 15 16 2 2 2
+H007 (3) 15 1 1 1
+H012 (11) 15 1 1 1
+H011 (14) 15 0 0 0
+H009 (12) 16 1 1 1
+ 17 18 1 1 1
+H008 (4) 17 0 0 1
+H006 (13) 17 1 0 1
+H014 (5) 19 0 0 0
+H001 (7) 20 0 0 0
+H013 (6) 22 2 2 2
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (10) 21 1 1 1
+H000 (9) 22 0 0 0
+H010 (2) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.8095
+Rescaled consistency index (RC) = 0.4857
+
+ /------------------ H002
+ |
+ | /--------- H007
+ | |
+ /-------16-------15--------- H012
+ | | |
+ | | \--------- H011
+ | |
+ /--------18 \------------------ H009
+ | |
+ | | /--------- H008
+ /-------19 \----------------17
+ | | \--------- H006
+ | |
+ /-------20 \------------------------------------- H014
+ | |
+ | \---------------------------------------------- H001
+ |
+ +------------------------------------------------------- H013
+ /-------22
+ | | /--------- H003
+ | +--------------------------------------------21
+ | | \--------- H005
+--------23 |
+ | \------------------------------------------------------- H000
+ |
+ \---------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_20 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_20 --> node_19 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_19 --> node_18 10 1 1.000 2 ==> 1
+ node_18 --> node_16 9 1 0.500 2 --> 1
+ node_16 --> node_15 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ node_15 --> H012 11 1 0.500 2 ==> 1
+ node_16 --> H009 12 1 0.333 2 ==> 1
+ node_18 --> node_17 11 1 0.500 2 ==> 1
+ node_17 --> H006 9 1 0.500 2 --> 1
+ node_22 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 60:
+
+Branch lengths and linkages for tree #60
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 24 root 0 0 0
+ 23 24 0 0 0
+ 21 23 2 2 2
+ 20 21 3 3 3
+ 19 20 1 1 1
+ 18 19 1 1 1
+H002 (1) 18 0 0 0
+ 17 18 0 0 1
+ 16 17 2 2 2
+H007 (3) 16 1 0 1
+ 15 16 0 0 1
+H012 (11) 15 1 1 1
+H011 (14) 15 0 0 0
+H009 (12) 17 1 0 1
+H006 (13) 18 1 1 1
+H008 (4) 19 1 1 1
+H014 (5) 20 0 0 0
+H001 (7) 21 0 0 0
+H013 (6) 23 2 2 2
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (10) 22 1 1 1
+H000 (9) 23 0 0 0
+H010 (2) 24 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.8095
+Rescaled consistency index (RC) = 0.4857
+
+ /----------------------------- H002
+ |
+ | /--------------- H007
+ | |
+ | /-----16 /------- H012
+ /-----18 | \------15
+ | +-----17 \------- H011
+ | | |
+ | | \---------------------- H009
+ /------19 |
+ | | \----------------------------- H006
+ | |
+ /-----20 \------------------------------------ H008
+ | |
+ /-----21 \-------------------------------------------- H014
+ | |
+ | \--------------------------------------------------- H001
+ |
+ +---------------------------------------------------------- H013
+ /------23
+ | | /------- H003
+ | +-------------------------------------------------22
+ | | \------- H005
+------24 |
+ | \---------------------------------------------------------- H000
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_21 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_21 --> node_20 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_20 --> node_19 10 1 1.000 2 ==> 1
+ node_19 --> node_18 9 1 1.000 2 ==> 1
+ node_17 --> node_16 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 --> 1
+ node_15 --> H012 11 1 0.333 2 ==> 1
+ node_17 --> H009 12 1 0.333 2 --> 1
+ node_18 --> H006 11 1 0.333 2 ==> 1
+ node_19 --> H008 11 1 0.333 2 ==> 1
+ node_23 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+ node_24 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 61:
+
+Branch lengths and linkages for tree #61
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 22 23 0 0 0
+ 20 22 2 2 2
+ 19 20 3 3 3
+ 18 19 2 2 2
+H002 (1) 18 0 0 0
+ 17 18 1 1 1
+ 16 17 2 2 2
+ 15 16 1 1 1
+H007 (3) 15 1 1 1
+H011 (14) 15 0 0 0
+H012 (11) 16 0 0 0
+H008 (4) 17 1 1 1
+H006 (13) 17 0 0 0
+H009 (12) 18 1 1 1
+H014 (5) 19 0 0 0
+H001 (7) 20 0 0 0
+H013 (6) 22 2 2 2
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (10) 21 1 1 1
+H000 (9) 22 0 0 0
+H010 (2) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.8095
+Rescaled consistency index (RC) = 0.4857
+
+ /-------------------------------- H002
+ |
+ | /-------- H007
+ | /------15
+ | | \-------- H011
+ | /------16
+ /-------18 | \---------------- H012
+ | | |
+ | +------17------------------------ H008
+ | | |
+ /------19 | \------------------------ H006
+ | | |
+ | | \-------------------------------- H009
+ /------20 |
+ | | \----------------------------------------- H014
+ | |
+ | \------------------------------------------------- H001
+ |
+ +--------------------------------------------------------- H013
+ /------22
+ | | /-------- H003
+ | +-----------------------------------------------21
+ | | \-------- H005
+-------23 |
+ | \--------------------------------------------------------- H000
+ |
+ \----------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_20 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_20 --> node_19 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_19 --> node_18 9 1 0.500 2 ==> 1
+ 10 1 1.000 2 ==> 1
+ node_18 --> node_17 11 1 0.500 2 ==> 1
+ node_17 --> node_16 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_16 --> node_15 11 1 0.500 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ node_17 --> H008 9 1 0.500 1 ==> 2
+ node_18 --> H009 12 1 0.333 2 ==> 1
+ node_22 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 62:
+
+Branch lengths and linkages for tree #62
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 24 root 0 0 0
+ 23 24 0 0 0
+ 21 23 0 0 2
+ 20 21 2 2 2
+ 19 20 3 1 3
+ 18 19 2 2 2
+H002 (1) 18 0 0 0
+ 17 18 1 1 1
+ 16 17 2 2 2
+ 15 16 1 1 1
+H007 (3) 15 1 1 1
+H011 (14) 15 0 0 0
+H012 (11) 16 0 0 0
+H008 (4) 17 1 1 1
+H006 (13) 17 0 0 0
+H009 (12) 18 1 1 1
+H014 (5) 19 0 0 0
+H001 (7) 20 0 0 2
+H013 (6) 21 2 0 2
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (10) 22 1 1 1
+H000 (9) 23 0 0 0
+H010 (2) 24 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.8095
+Rescaled consistency index (RC) = 0.4857
+
+ /----------------------------- H002
+ |
+ | /------- H007
+ | /------15
+ | | \------- H011
+ | /-----16
+ /-----18 | \--------------- H012
+ | | |
+ | +-----17---------------------- H008
+ | | |
+ /------19 | \---------------------- H006
+ | | |
+ | | \----------------------------- H009
+ /-----20 |
+ | | \------------------------------------ H014
+ | |
+ /-----21 \-------------------------------------------- H001
+ | |
+ | \--------------------------------------------------- H013
+ |
+ /------23 /------- H003
+ | +-------------------------------------------------22
+ | | \------- H005
+------24 |
+ | \---------------------------------------------------------- H000
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_20 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_20 --> node_19 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_19 --> node_18 9 1 0.500 2 ==> 1
+ 10 1 1.000 2 ==> 1
+ node_18 --> node_17 11 1 0.500 2 ==> 1
+ node_17 --> node_16 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_16 --> node_15 11 1 0.500 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ node_17 --> H008 9 1 0.500 1 ==> 2
+ node_18 --> H009 12 1 0.333 2 ==> 1
+ node_21 --> H013 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+ node_24 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 63:
+
+Branch lengths and linkages for tree #63
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 24 root 0 0 0
+ 23 24 0 0 0
+ 21 23 0 0 2
+ 20 21 2 2 2
+ 19 20 3 1 3
+ 18 19 1 1 2
+ 16 18 1 0 1
+H002 (1) 16 0 0 0
+ 15 16 2 2 2
+H007 (3) 15 1 1 1
+H012 (11) 15 1 1 1
+H011 (14) 15 0 0 0
+H009 (12) 16 1 1 1
+ 17 18 1 1 1
+H008 (4) 17 0 0 1
+H006 (13) 17 1 0 1
+H014 (5) 19 0 0 0
+H001 (7) 20 0 0 2
+H013 (6) 21 2 0 2
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (10) 22 1 1 1
+H000 (9) 23 0 0 0
+H010 (2) 24 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.8095
+Rescaled consistency index (RC) = 0.4857
+
+ /---------------- H002
+ |
+ | /-------- H007
+ | |
+ /------16------15-------- H012
+ | | |
+ | | \-------- H011
+ | |
+ /------18 \---------------- H009
+ | |
+ | | /-------- H008
+ /-------19 \--------------17
+ | | \-------- H006
+ | |
+ /------20 \-------------------------------- H014
+ | |
+ /------21 \----------------------------------------- H001
+ | |
+ | \------------------------------------------------- H013
+ |
+ /------23 /-------- H003
+ | +-----------------------------------------------22
+ | | \-------- H005
+-------24 |
+ | \--------------------------------------------------------- H000
+ |
+ \----------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_20 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_20 --> node_19 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_19 --> node_18 10 1 1.000 2 ==> 1
+ node_18 --> node_16 9 1 0.500 2 --> 1
+ node_16 --> node_15 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ node_15 --> H012 11 1 0.500 2 ==> 1
+ node_16 --> H009 12 1 0.333 2 ==> 1
+ node_18 --> node_17 11 1 0.500 2 ==> 1
+ node_17 --> H006 9 1 0.500 2 --> 1
+ node_21 --> H013 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+ node_24 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 64:
+
+Branch lengths and linkages for tree #64
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 22 23 0 0 0
+ 20 22 0 0 2
+ 19 20 2 2 2
+ 18 19 3 1 3
+ 17 18 1 1 1
+ 16 17 1 1 1
+H002 (1) 16 0 0 0
+ 15 16 2 2 2
+H007 (3) 15 1 1 1
+H012 (11) 15 1 1 1
+H011 (14) 15 0 0 0
+H009 (12) 16 1 1 1
+H006 (13) 16 1 1 1
+H008 (4) 17 1 1 1
+H014 (5) 18 0 0 0
+H001 (7) 19 0 0 2
+H013 (6) 20 2 0 2
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (10) 21 1 1 1
+H000 (9) 22 0 0 0
+H010 (2) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.8095
+Rescaled consistency index (RC) = 0.4857
+
+ /---------------- H002
+ |
+ | /-------- H007
+ | |
+ +------15-------- H012
+ /------16 |
+ | | \-------- H011
+ | |
+ | +---------------- H009
+ /------17 |
+ | | \---------------- H006
+ | |
+ /-------18 \------------------------ H008
+ | |
+ /------19 \-------------------------------- H014
+ | |
+ /------20 \----------------------------------------- H001
+ | |
+ | \------------------------------------------------- H013
+ |
+ /------22 /-------- H003
+ | +-----------------------------------------------21
+ | | \-------- H005
+-------23 |
+ | \--------------------------------------------------------- H000
+ |
+ \----------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_20 --> node_19 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_19 --> node_18 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_18 --> node_17 10 1 1.000 2 ==> 1
+ node_17 --> node_16 9 1 1.000 2 ==> 1
+ node_16 --> node_15 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ node_15 --> H012 11 1 0.333 2 ==> 1
+ node_16 --> H009 12 1 0.333 2 ==> 1
+ node_16 --> H006 11 1 0.333 2 ==> 1
+ node_17 --> H008 11 1 0.333 2 ==> 1
+ node_20 --> H013 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 65:
+
+Branch lengths and linkages for tree #65
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 22 root 0 0 0
+ 21 22 0 0 0
+ 19 21 2 2 2
+ 18 19 3 3 3
+ 17 18 1 1 1
+ 16 17 1 1 1
+H002 (1) 16 0 0 0
+ 15 16 2 2 2
+H007 (3) 15 1 1 1
+H012 (11) 15 1 1 1
+H011 (14) 15 0 0 0
+H009 (12) 16 1 1 1
+H006 (13) 16 1 1 1
+H008 (4) 17 1 1 1
+H014 (5) 18 0 0 0
+H001 (7) 19 0 0 0
+H013 (6) 21 2 2 2
+ 20 21 1 1 1
+H003 (8) 20 1 1 1
+H005 (10) 20 1 1 1
+H000 (9) 21 0 0 0
+H010 (2) 22 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.8095
+Rescaled consistency index (RC) = 0.4857
+
+ /------------------ H002
+ |
+ | /--------- H007
+ | |
+ +-------15--------- H012
+ /-------16 |
+ | | \--------- H011
+ | |
+ | +------------------ H009
+ /--------17 |
+ | | \------------------ H006
+ | |
+ /-------18 \--------------------------- H008
+ | |
+ /-------19 \------------------------------------- H014
+ | |
+ | \---------------------------------------------- H001
+ |
+ +------------------------------------------------------- H013
+ /-------21
+ | | /--------- H003
+ | +--------------------------------------------20
+ | | \--------- H005
+--------22 |
+ | \------------------------------------------------------- H000
+ |
+ \---------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_19 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_19 --> node_18 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_18 --> node_17 10 1 1.000 2 ==> 1
+ node_17 --> node_16 9 1 1.000 2 ==> 1
+ node_16 --> node_15 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ node_15 --> H012 11 1 0.333 2 ==> 1
+ node_16 --> H009 12 1 0.333 2 ==> 1
+ node_16 --> H006 11 1 0.333 2 ==> 1
+ node_17 --> H008 11 1 0.333 2 ==> 1
+ node_21 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ node_21 --> node_20 3 1 1.000 2 ==> 1
+ node_20 --> H003 4 1 1.000 2 ==> 1
+ node_20 --> H005 12 1 0.333 2 ==> 1
+ node_22 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 66:
+
+Branch lengths and linkages for tree #66
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 24 root 0 0 0
+ 23 24 0 0 0
+ 21 23 2 2 2
+ 20 21 3 3 3
+ 19 20 1 1 1
+ 18 19 1 1 1
+H002 (1) 18 0 0 0
+ 17 18 0 0 1
+ 16 17 2 2 2
+ 15 16 0 0 1
+H007 (3) 15 1 1 1
+H011 (14) 15 0 0 0
+H012 (11) 16 1 0 1
+H006 (13) 17 1 0 1
+H009 (12) 18 1 1 1
+H008 (4) 19 1 1 1
+H014 (5) 20 0 0 0
+H013 (6) 21 0 0 0
+H001 (7) 23 2 2 2
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (10) 22 1 1 1
+H000 (9) 23 0 0 0
+H010 (2) 24 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.8095
+Rescaled consistency index (RC) = 0.4857
+
+ /----------------------------- H002
+ |
+ | /------- H007
+ | /------15
+ | | \------- H011
+ /-----18 /-----16
+ | | | \--------------- H012
+ | +-----17
+ | | \---------------------- H006
+ /------19 |
+ | | \----------------------------- H009
+ | |
+ /-----20 \------------------------------------ H008
+ | |
+ /-----21 \-------------------------------------------- H014
+ | |
+ | \--------------------------------------------------- H013
+ |
+ +---------------------------------------------------------- H001
+ /------23
+ | | /------- H003
+ | +-------------------------------------------------22
+ | | \------- H005
+------24 |
+ | \---------------------------------------------------------- H000
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_21 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_21 --> node_20 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_20 --> node_19 10 1 1.000 2 ==> 1
+ node_19 --> node_18 9 1 1.000 2 ==> 1
+ node_17 --> node_16 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ node_16 --> H012 11 1 0.333 2 --> 1
+ node_17 --> H006 11 1 0.333 2 --> 1
+ node_18 --> H009 12 1 0.333 2 ==> 1
+ node_19 --> H008 11 1 0.333 2 ==> 1
+ node_23 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+ node_24 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 67:
+
+Branch lengths and linkages for tree #67
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 26 root 0 0 0
+ 25 26 0 0 0
+ 23 25 0 0 2
+ 22 23 2 2 2
+ 21 22 3 1 3
+ 20 21 1 1 2
+ 19 20 1 1 1
+ 18 19 0 0 1
+ 15 18 0 0 1
+H002 (1) 15 0 0 0
+H009 (12) 15 1 1 1
+ 17 18 2 2 2
+ 16 17 0 0 1
+H007 (3) 16 1 1 1
+H011 (14) 16 0 0 0
+H012 (11) 17 1 0 1
+H006 (13) 19 1 0 1
+H008 (4) 20 1 0 1
+H014 (5) 21 0 0 0
+H013 (6) 22 0 0 2
+H001 (7) 23 2 0 2
+ 24 25 1 1 1
+H003 (8) 24 1 1 1
+H005 (10) 24 1 1 1
+H000 (9) 25 0 0 0
+H010 (2) 26 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.8095
+Rescaled consistency index (RC) = 0.4857
+
+ /------- H002
+ /-----------15
+ | \------- H009
+ |
+ /-----18 /------- H007
+ | | /----16
+ | | | \------- H011
+ /----19 \-----17
+ | | \------------- H012
+ | |
+ /-----20 \--------------------------- H006
+ | |
+ /----21 \--------------------------------- H008
+ | |
+ /-----22 \---------------------------------------- H014
+ | |
+ /-----23 \---------------------------------------------- H013
+ | |
+ | \----------------------------------------------------- H001
+ |
+ /----25 /------- H003
+ | +---------------------------------------------------24
+ | | \------- H005
+------26 |
+ | \------------------------------------------------------------ H000
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_22 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_22 --> node_21 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_21 --> node_20 10 1 1.000 2 ==> 1
+ node_20 --> node_19 9 1 1.000 2 ==> 1
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_18 --> node_17 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 ==> 1
+ node_17 --> H012 11 1 0.333 2 --> 1
+ node_19 --> H006 11 1 0.333 2 --> 1
+ node_20 --> H008 11 1 0.333 2 --> 1
+ node_23 --> H001 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ node_25 --> node_24 3 1 1.000 2 ==> 1
+ node_24 --> H003 4 1 1.000 2 ==> 1
+ node_24 --> H005 12 1 0.333 2 ==> 1
+ node_26 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 68:
+
+Branch lengths and linkages for tree #68
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 25 root 0 0 0
+ 24 25 0 0 0
+ 22 24 0 0 2
+ 21 22 2 2 2
+ 20 21 3 1 3
+ 19 20 1 1 1
+ 18 19 1 1 1
+H002 (1) 18 0 0 0
+ 17 18 0 0 1
+ 16 17 2 2 2
+ 15 16 0 0 1
+H007 (3) 15 1 1 1
+H011 (14) 15 0 0 0
+H012 (11) 16 1 0 1
+H006 (13) 17 1 0 1
+H009 (12) 18 1 1 1
+H008 (4) 19 1 1 1
+H014 (5) 20 0 0 0
+H013 (6) 21 0 0 2
+H001 (7) 22 2 0 2
+ 23 24 1 1 1
+H003 (8) 23 1 1 1
+H005 (10) 23 1 1 1
+H000 (9) 24 0 0 0
+H010 (2) 25 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.8095
+Rescaled consistency index (RC) = 0.4857
+
+ /--------------------------- H002
+ |
+ | /------- H007
+ | /----15
+ | | \------- H011
+ /----18 /-----16
+ | | | \------------- H012
+ | +-----17
+ | | \-------------------- H006
+ /-----19 |
+ | | \--------------------------- H009
+ | |
+ /----20 \--------------------------------- H008
+ | |
+ /-----21 \---------------------------------------- H014
+ | |
+ /-----22 \---------------------------------------------- H013
+ | |
+ | \----------------------------------------------------- H001
+ |
+ /----24 /------- H003
+ | +---------------------------------------------------23
+ | | \------- H005
+------25 |
+ | \------------------------------------------------------------ H000
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_21 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_21 --> node_20 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_20 --> node_19 10 1 1.000 2 ==> 1
+ node_19 --> node_18 9 1 1.000 2 ==> 1
+ node_17 --> node_16 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ node_16 --> H012 11 1 0.333 2 --> 1
+ node_17 --> H006 11 1 0.333 2 --> 1
+ node_18 --> H009 12 1 0.333 2 ==> 1
+ node_19 --> H008 11 1 0.333 2 ==> 1
+ node_22 --> H001 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ node_24 --> node_23 3 1 1.000 2 ==> 1
+ node_23 --> H003 4 1 1.000 2 ==> 1
+ node_23 --> H005 12 1 0.333 2 ==> 1
+ node_25 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 69:
+
+Branch lengths and linkages for tree #69
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 22 23 0 0 0
+ 20 22 2 2 2
+ 19 20 3 3 3
+ 18 19 1 1 2
+ 17 18 1 1 1
+ 16 17 0 0 1
+H002 (1) 16 0 0 0
+ 15 16 2 2 2
+H007 (3) 15 1 1 1
+H012 (11) 15 1 1 1
+H011 (14) 15 0 0 0
+H009 (12) 16 1 1 1
+H006 (13) 17 1 0 1
+H008 (4) 18 1 0 1
+H014 (5) 19 0 0 0
+H001 (7) 20 0 0 0
+H013 (6) 22 2 2 2
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (10) 21 1 1 1
+H000 (9) 22 0 0 0
+H010 (2) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.8095
+Rescaled consistency index (RC) = 0.4857
+
+ /---------------- H002
+ |
+ | /-------- H007
+ | |
+ /------16------15-------- H012
+ | | |
+ | | \-------- H011
+ /------17 |
+ | | \---------------- H009
+ | |
+ /-------18 \------------------------ H006
+ | |
+ /------19 \-------------------------------- H008
+ | |
+ /------20 \----------------------------------------- H014
+ | |
+ | \------------------------------------------------- H001
+ |
+ +--------------------------------------------------------- H013
+ /------22
+ | | /-------- H003
+ | +-----------------------------------------------21
+ | | \-------- H005
+-------23 |
+ | \--------------------------------------------------------- H000
+ |
+ \----------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_20 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_20 --> node_19 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_19 --> node_18 10 1 1.000 2 ==> 1
+ node_18 --> node_17 9 1 1.000 2 ==> 1
+ node_16 --> node_15 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ node_15 --> H012 11 1 0.333 2 ==> 1
+ node_16 --> H009 12 1 0.333 2 ==> 1
+ node_17 --> H006 11 1 0.333 2 --> 1
+ node_18 --> H008 11 1 0.333 2 --> 1
+ node_22 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 70:
+
+Branch lengths and linkages for tree #70
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 24 root 0 0 0
+ 23 24 0 0 0
+ 21 23 0 0 2
+ 20 21 2 2 2
+ 19 20 3 1 3
+ 18 19 1 1 2
+ 17 18 1 1 1
+ 16 17 0 0 1
+H002 (1) 16 0 0 0
+ 15 16 2 2 2
+H007 (3) 15 1 1 1
+H012 (11) 15 1 1 1
+H011 (14) 15 0 0 0
+H009 (12) 16 1 1 1
+H006 (13) 17 1 0 1
+H008 (4) 18 1 0 1
+H014 (5) 19 0 0 0
+H001 (7) 20 0 0 2
+H013 (6) 21 2 0 2
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (10) 22 1 1 1
+H000 (9) 23 0 0 0
+H010 (2) 24 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.8095
+Rescaled consistency index (RC) = 0.4857
+
+ /--------------- H002
+ |
+ | /------- H007
+ | |
+ /-----16------15------- H012
+ | | |
+ | | \------- H011
+ /-----17 |
+ | | \--------------- H009
+ | |
+ /-----18 \---------------------- H006
+ | |
+ /------19 \----------------------------- H008
+ | |
+ /-----20 \------------------------------------ H014
+ | |
+ /-----21 \-------------------------------------------- H001
+ | |
+ | \--------------------------------------------------- H013
+ |
+ /------23 /------- H003
+ | +-------------------------------------------------22
+ | | \------- H005
+------24 |
+ | \---------------------------------------------------------- H000
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_20 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_20 --> node_19 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_19 --> node_18 10 1 1.000 2 ==> 1
+ node_18 --> node_17 9 1 1.000 2 ==> 1
+ node_16 --> node_15 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ node_15 --> H012 11 1 0.333 2 ==> 1
+ node_16 --> H009 12 1 0.333 2 ==> 1
+ node_17 --> H006 11 1 0.333 2 --> 1
+ node_18 --> H008 11 1 0.333 2 --> 1
+ node_21 --> H013 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+ node_24 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 71:
+
+Branch lengths and linkages for tree #71
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 26 root 0 0 0
+ 25 26 0 0 0
+ 23 25 0 0 2
+ 22 23 2 2 2
+ 21 22 3 1 3
+ 20 21 1 1 2
+ 19 20 1 1 1
+ 15 19 0 0 1
+H002 (1) 15 0 0 0
+H009 (12) 15 1 1 1
+ 18 19 0 0 1
+ 17 18 2 2 2
+ 16 17 0 0 1
+H007 (3) 16 1 1 1
+H011 (14) 16 0 0 0
+H012 (11) 17 1 0 1
+H006 (13) 18 1 0 1
+H008 (4) 20 1 0 1
+H014 (5) 21 0 0 0
+H013 (6) 22 0 0 2
+H001 (7) 23 2 0 2
+ 24 25 1 1 1
+H003 (8) 24 1 1 1
+H005 (10) 24 1 1 1
+H000 (9) 25 0 0 0
+H010 (2) 26 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.8095
+Rescaled consistency index (RC) = 0.4857
+
+ /------- H002
+ /------------------15
+ | \------- H009
+ |
+ | /------- H007
+ /----19 /----16
+ | | | \------- H011
+ | | /-----17
+ | | | \------------- H012
+ /-----20 \-----18
+ | | \-------------------- H006
+ | |
+ /----21 \--------------------------------- H008
+ | |
+ /-----22 \---------------------------------------- H014
+ | |
+ /-----23 \---------------------------------------------- H013
+ | |
+ | \----------------------------------------------------- H001
+ |
+ /----25 /------- H003
+ | +---------------------------------------------------24
+ | | \------- H005
+------26 |
+ | \------------------------------------------------------------ H000
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_22 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_22 --> node_21 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_21 --> node_20 10 1 1.000 2 ==> 1
+ node_20 --> node_19 9 1 1.000 2 ==> 1
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_18 --> node_17 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 ==> 1
+ node_17 --> H012 11 1 0.333 2 --> 1
+ node_18 --> H006 11 1 0.333 2 --> 1
+ node_20 --> H008 11 1 0.333 2 --> 1
+ node_23 --> H001 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ node_25 --> node_24 3 1 1.000 2 ==> 1
+ node_24 --> H003 4 1 1.000 2 ==> 1
+ node_24 --> H005 12 1 0.333 2 ==> 1
+ node_26 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 72:
+
+Branch lengths and linkages for tree #72
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 25 root 0 0 0
+ 24 25 0 0 0
+ 22 24 0 0 2
+ 21 22 2 2 2
+ 20 21 3 1 3
+ 19 20 1 1 2
+ 18 19 1 1 1
+ 15 18 0 0 1
+H002 (1) 15 0 0 0
+H009 (12) 15 1 1 1
+ 17 18 2 2 2
+ 16 17 0 0 1
+H007 (3) 16 1 1 1
+H011 (14) 16 0 0 0
+H012 (11) 17 1 0 1
+H006 (13) 18 1 0 1
+H008 (4) 19 1 0 1
+H014 (5) 20 0 0 0
+H013 (6) 21 0 0 2
+H001 (7) 22 2 0 2
+ 23 24 1 1 1
+H003 (8) 23 1 1 1
+H005 (10) 23 1 1 1
+H000 (9) 24 0 0 0
+H010 (2) 25 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.8095
+Rescaled consistency index (RC) = 0.4857
+
+ /------- H002
+ /-------------15
+ | \------- H009
+ |
+ | /------- H007
+ | /------16
+ /-----18 | \------- H011
+ | +-----17
+ | | \--------------- H012
+ /-----19 |
+ | | \---------------------- H006
+ | |
+ /------20 \----------------------------- H008
+ | |
+ /-----21 \------------------------------------ H014
+ | |
+ /-----22 \-------------------------------------------- H013
+ | |
+ | \--------------------------------------------------- H001
+ |
+ /------24 /------- H003
+ | +-------------------------------------------------23
+ | | \------- H005
+------25 |
+ | \---------------------------------------------------------- H000
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_21 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_21 --> node_20 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_20 --> node_19 10 1 1.000 2 ==> 1
+ node_19 --> node_18 9 1 1.000 2 ==> 1
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_18 --> node_17 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 ==> 1
+ node_17 --> H012 11 1 0.333 2 --> 1
+ node_18 --> H006 11 1 0.333 2 --> 1
+ node_19 --> H008 11 1 0.333 2 --> 1
+ node_22 --> H001 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ node_24 --> node_23 3 1 1.000 2 ==> 1
+ node_23 --> H003 4 1 1.000 2 ==> 1
+ node_23 --> H005 12 1 0.333 2 ==> 1
+ node_25 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 73:
+
+Branch lengths and linkages for tree #73
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 25 root 0 0 0
+ 24 25 0 0 0
+ 22 24 0 0 2
+ 21 22 2 2 2
+ 20 21 3 1 3
+ 19 20 1 1 1
+ 18 19 1 1 1
+H002 (1) 18 0 0 0
+ 17 18 0 0 1
+ 16 17 2 2 2
+H007 (3) 16 1 0 1
+ 15 16 0 0 1
+H012 (11) 15 1 1 1
+H011 (14) 15 0 0 0
+H009 (12) 17 1 0 1
+H006 (13) 18 1 1 1
+H008 (4) 19 1 1 1
+H014 (5) 20 0 0 0
+H013 (6) 21 0 0 2
+H001 (7) 22 2 0 2
+ 23 24 1 1 1
+H003 (8) 23 1 1 1
+H005 (10) 23 1 1 1
+H000 (9) 24 0 0 0
+H010 (2) 25 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.8095
+Rescaled consistency index (RC) = 0.4857
+
+ /--------------------------- H002
+ |
+ | /------------- H007
+ | |
+ | /-----16 /------- H012
+ /----18 | \----15
+ | +-----17 \------- H011
+ | | |
+ | | \-------------------- H009
+ /-----19 |
+ | | \--------------------------- H006
+ | |
+ /----20 \--------------------------------- H008
+ | |
+ /-----21 \---------------------------------------- H014
+ | |
+ /-----22 \---------------------------------------------- H013
+ | |
+ | \----------------------------------------------------- H001
+ |
+ /----24 /------- H003
+ | +---------------------------------------------------23
+ | | \------- H005
+------25 |
+ | \------------------------------------------------------------ H000
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_21 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_21 --> node_20 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_20 --> node_19 10 1 1.000 2 ==> 1
+ node_19 --> node_18 9 1 1.000 2 ==> 1
+ node_17 --> node_16 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 --> 1
+ node_15 --> H012 11 1 0.333 2 ==> 1
+ node_17 --> H009 12 1 0.333 2 --> 1
+ node_18 --> H006 11 1 0.333 2 ==> 1
+ node_19 --> H008 11 1 0.333 2 ==> 1
+ node_22 --> H001 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ node_24 --> node_23 3 1 1.000 2 ==> 1
+ node_23 --> H003 4 1 1.000 2 ==> 1
+ node_23 --> H005 12 1 0.333 2 ==> 1
+ node_25 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 74:
+
+Branch lengths and linkages for tree #74
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 24 root 0 0 0
+ 23 24 0 0 0
+ 21 23 2 2 2
+ 20 21 3 3 3
+ 19 20 0 0 1
+ 18 19 2 2 2
+ 15 18 0 0 1
+H002 (1) 15 0 0 0
+H009 (12) 15 1 1 1
+ 17 18 0 0 1
+ 16 17 1 1 1
+H008 (4) 16 1 0 1
+H014 (5) 16 1 1 2
+H006 (13) 17 1 0 1
+H012 (11) 19 1 0 1
+H007 (3) 20 1 1 1
+H011 (14) 20 0 0 0
+H013 (6) 21 0 0 0
+H001 (7) 23 2 2 2
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (10) 22 1 1 1
+H000 (9) 23 0 0 0
+H010 (2) 24 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.8095
+Rescaled consistency index (RC) = 0.4857
+
+ /-------- H002
+ /--------------15
+ | \-------- H009
+ |
+ /------18 /-------- H008
+ | | /------16
+ | | | \-------- H014
+ /-------19 \------17
+ | | \---------------- H006
+ | |
+ | \-------------------------------- H012
+ /------20
+ | +----------------------------------------- H007
+ | |
+ /------21 \----------------------------------------- H011
+ | |
+ | \------------------------------------------------- H013
+ |
+ +--------------------------------------------------------- H001
+ /------23
+ | | /-------- H003
+ | +-----------------------------------------------22
+ | | \-------- H005
+-------24 |
+ | \--------------------------------------------------------- H000
+ |
+ \----------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_21 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_21 --> node_20 8 1 1.000 2 ==> 1
+ 9 1 0.500 2 ==> 1
+ 10 1 0.500 2 ==> 1
+ node_19 --> node_18 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_17 --> node_16 9 1 0.500 1 ==> 2
+ node_16 --> H008 11 1 0.333 2 --> 1
+ node_16 --> H014 10 1 0.500 1 ==> 2
+ node_17 --> H006 11 1 0.333 2 --> 1
+ node_19 --> H012 11 1 0.333 2 --> 1
+ node_20 --> H007 12 1 0.333 2 ==> 1
+ node_23 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+ node_24 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 75:
+
+Branch lengths and linkages for tree #75
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 24 root 0 0 0
+ 23 24 0 0 0
+ 21 23 2 2 2
+ 20 21 3 3 3
+ 19 20 0 0 1
+ 18 19 2 2 2
+ 17 18 0 0 1
+ 15 17 0 0 1
+H002 (1) 15 0 0 0
+H009 (12) 15 1 1 1
+ 16 17 1 1 1
+H008 (4) 16 1 0 1
+H014 (5) 16 1 1 2
+H006 (13) 18 1 0 1
+H012 (11) 19 1 0 1
+H007 (3) 20 1 1 1
+H011 (14) 20 0 0 0
+H013 (6) 21 0 0 0
+H001 (7) 23 2 2 2
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (10) 22 1 1 1
+H000 (9) 23 0 0 0
+H010 (2) 24 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.8095
+Rescaled consistency index (RC) = 0.4857
+
+ /-------- H002
+ /------15
+ | \-------- H009
+ /------17
+ | | /-------- H008
+ | \------16
+ /------18 \-------- H014
+ | |
+ /-------19 \------------------------ H006
+ | |
+ | \-------------------------------- H012
+ /------20
+ | +----------------------------------------- H007
+ | |
+ /------21 \----------------------------------------- H011
+ | |
+ | \------------------------------------------------- H013
+ |
+ +--------------------------------------------------------- H001
+ /------23
+ | | /-------- H003
+ | +-----------------------------------------------22
+ | | \-------- H005
+-------24 |
+ | \--------------------------------------------------------- H000
+ |
+ \----------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_21 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_21 --> node_20 8 1 1.000 2 ==> 1
+ 9 1 0.500 2 ==> 1
+ 10 1 0.500 2 ==> 1
+ node_19 --> node_18 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_17 --> node_16 9 1 0.500 1 ==> 2
+ node_16 --> H008 11 1 0.333 2 --> 1
+ node_16 --> H014 10 1 0.500 1 ==> 2
+ node_18 --> H006 11 1 0.333 2 --> 1
+ node_19 --> H012 11 1 0.333 2 --> 1
+ node_20 --> H007 12 1 0.333 2 ==> 1
+ node_23 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+ node_24 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 76:
+
+Branch lengths and linkages for tree #76
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 22 23 0 0 0
+ 20 22 2 2 2
+ 19 20 3 3 3
+ 18 19 0 0 1
+ 17 18 2 2 2
+ 15 17 0 0 1
+H002 (1) 15 0 0 0
+H009 (12) 15 1 1 1
+ 16 17 1 1 1
+H008 (4) 16 1 0 1
+H014 (5) 16 1 1 2
+H006 (13) 17 1 0 1
+H012 (11) 18 1 0 1
+H007 (3) 19 1 1 1
+H011 (14) 19 0 0 0
+H013 (6) 20 0 0 0
+H001 (7) 22 2 2 2
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (10) 21 1 1 1
+H000 (9) 22 0 0 0
+H010 (2) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.8095
+Rescaled consistency index (RC) = 0.4857
+
+ /--------- H002
+ /-------15
+ | \--------- H009
+ |
+ | /--------- H008
+ /-------17-------16
+ | | \--------- H014
+ | |
+ /--------18 \------------------ H006
+ | |
+ | \--------------------------- H012
+ /-------19
+ | +------------------------------------- H007
+ | |
+ /-------20 \------------------------------------- H011
+ | |
+ | \---------------------------------------------- H013
+ |
+ +------------------------------------------------------- H001
+ /-------22
+ | | /--------- H003
+ | +--------------------------------------------21
+ | | \--------- H005
+--------23 |
+ | \------------------------------------------------------- H000
+ |
+ \---------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_20 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_20 --> node_19 8 1 1.000 2 ==> 1
+ 9 1 0.500 2 ==> 1
+ 10 1 0.500 2 ==> 1
+ node_18 --> node_17 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_17 --> node_16 9 1 0.500 1 ==> 2
+ node_16 --> H008 11 1 0.333 2 --> 1
+ node_16 --> H014 10 1 0.500 1 ==> 2
+ node_17 --> H006 11 1 0.333 2 --> 1
+ node_18 --> H012 11 1 0.333 2 --> 1
+ node_19 --> H007 12 1 0.333 2 ==> 1
+ node_22 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 77:
+
+Branch lengths and linkages for tree #77
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 25 root 0 0 0
+ 24 25 0 0 0
+ 22 24 2 2 2
+ 21 22 3 3 3
+ 20 21 1 1 2
+ 15 20 1 0 1
+H002 (1) 15 0 0 0
+H009 (12) 15 1 1 1
+ 19 20 1 1 1
+ 18 19 1 0 1
+ 17 18 2 2 2
+ 16 17 1 1 1
+H007 (3) 16 1 1 1
+H011 (14) 16 0 0 0
+H012 (11) 17 0 0 0
+H006 (13) 18 0 0 0
+H008 (4) 19 0 0 1
+H014 (5) 21 0 0 0
+H001 (7) 22 0 0 0
+H013 (6) 24 2 2 2
+ 23 24 1 1 1
+H003 (8) 23 1 1 1
+H005 (10) 23 1 1 1
+H000 (9) 24 0 0 0
+H010 (2) 25 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.8095
+Rescaled consistency index (RC) = 0.4857
+
+ /------- H002
+ /---------------------------15
+ | \------- H009
+ |
+ | /------- H007
+ | /------16
+ /------20 | \------- H011
+ | | /-----17
+ | | | \--------------- H012
+ | | /-----18
+ /-----21 | | \---------------------- H006
+ | | \-----19
+ | | \----------------------------- H008
+ /-----22 |
+ | | \-------------------------------------------- H014
+ | |
+ | \--------------------------------------------------- H001
+ |
+ +---------------------------------------------------------- H013
+ /------24
+ | | /------- H003
+ | +-------------------------------------------------23
+ | | \------- H005
+------25 |
+ | \---------------------------------------------------------- H000
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_24 --> node_22 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_22 --> node_21 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_21 --> node_20 10 1 1.000 2 ==> 1
+ node_20 --> node_15 9 1 0.500 2 --> 1
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_20 --> node_19 11 1 0.500 2 ==> 1
+ node_19 --> node_18 9 1 0.500 2 --> 1
+ node_18 --> node_17 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_17 --> node_16 11 1 0.500 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 ==> 1
+ node_24 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ node_24 --> node_23 3 1 1.000 2 ==> 1
+ node_23 --> H003 4 1 1.000 2 ==> 1
+ node_23 --> H005 12 1 0.333 2 ==> 1
+ node_25 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 78:
+
+Branch lengths and linkages for tree #78
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 26 root 0 0 0
+ 25 26 0 0 0
+ 23 25 0 0 2
+ 22 23 2 2 2
+ 21 22 3 1 3
+ 20 21 1 1 2
+ 15 20 1 0 1
+H002 (1) 15 0 0 0
+H009 (12) 15 1 1 1
+ 19 20 1 1 1
+ 18 19 1 0 1
+ 17 18 2 2 2
+ 16 17 1 1 1
+H007 (3) 16 1 1 1
+H011 (14) 16 0 0 0
+H012 (11) 17 0 0 0
+H006 (13) 18 0 0 0
+H008 (4) 19 0 0 1
+H014 (5) 21 0 0 0
+H001 (7) 22 0 0 2
+H013 (6) 23 2 0 2
+ 24 25 1 1 1
+H003 (8) 24 1 1 1
+H005 (10) 24 1 1 1
+H000 (9) 25 0 0 0
+H010 (2) 26 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.8095
+Rescaled consistency index (RC) = 0.4857
+
+ /------- H002
+ /------------------------15
+ | \------- H009
+ |
+ | /------- H007
+ | /----16
+ /-----20 | \------- H011
+ | | /-----17
+ | | | \------------- H012
+ | | /-----18
+ /----21 | | \-------------------- H006
+ | | \----19
+ | | \--------------------------- H008
+ /-----22 |
+ | | \---------------------------------------- H014
+ | |
+ /-----23 \---------------------------------------------- H001
+ | |
+ | \----------------------------------------------------- H013
+ |
+ /----25 /------- H003
+ | +---------------------------------------------------24
+ | | \------- H005
+------26 |
+ | \------------------------------------------------------------ H000
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_22 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_22 --> node_21 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_21 --> node_20 10 1 1.000 2 ==> 1
+ node_20 --> node_15 9 1 0.500 2 --> 1
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_20 --> node_19 11 1 0.500 2 ==> 1
+ node_19 --> node_18 9 1 0.500 2 --> 1
+ node_18 --> node_17 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_17 --> node_16 11 1 0.500 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 ==> 1
+ node_23 --> H013 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ node_25 --> node_24 3 1 1.000 2 ==> 1
+ node_24 --> H003 4 1 1.000 2 ==> 1
+ node_24 --> H005 12 1 0.333 2 ==> 1
+ node_26 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 79:
+
+Branch lengths and linkages for tree #79
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 25 root 0 0 0
+ 24 25 0 0 0
+ 22 24 0 0 2
+ 21 22 2 2 2
+ 20 21 3 1 3
+ 19 20 1 1 1
+ 18 19 1 1 1
+H002 (1) 18 0 0 0
+ 17 18 0 0 1
+ 16 17 2 2 2
+H007 (3) 16 1 0 1
+ 15 16 0 0 1
+H012 (11) 15 1 1 1
+H011 (14) 15 0 0 0
+H009 (12) 17 1 0 1
+H006 (13) 18 1 1 1
+H008 (4) 19 1 1 1
+H014 (5) 20 0 0 0
+H001 (7) 21 0 0 2
+H013 (6) 22 2 0 2
+ 23 24 1 1 1
+H003 (8) 23 1 1 1
+H005 (10) 23 1 1 1
+H000 (9) 24 0 0 0
+H010 (2) 25 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.8095
+Rescaled consistency index (RC) = 0.4857
+
+ /--------------------------- H002
+ |
+ | /------------- H007
+ | |
+ | /-----16 /------- H012
+ /----18 | \----15
+ | +-----17 \------- H011
+ | | |
+ | | \-------------------- H009
+ /-----19 |
+ | | \--------------------------- H006
+ | |
+ /----20 \--------------------------------- H008
+ | |
+ /-----21 \---------------------------------------- H014
+ | |
+ /-----22 \---------------------------------------------- H001
+ | |
+ | \----------------------------------------------------- H013
+ |
+ /----24 /------- H003
+ | +---------------------------------------------------23
+ | | \------- H005
+------25 |
+ | \------------------------------------------------------------ H000
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_21 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_21 --> node_20 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_20 --> node_19 10 1 1.000 2 ==> 1
+ node_19 --> node_18 9 1 1.000 2 ==> 1
+ node_17 --> node_16 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 --> 1
+ node_15 --> H012 11 1 0.333 2 ==> 1
+ node_17 --> H009 12 1 0.333 2 --> 1
+ node_18 --> H006 11 1 0.333 2 ==> 1
+ node_19 --> H008 11 1 0.333 2 ==> 1
+ node_22 --> H013 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ node_24 --> node_23 3 1 1.000 2 ==> 1
+ node_23 --> H003 4 1 1.000 2 ==> 1
+ node_23 --> H005 12 1 0.333 2 ==> 1
+ node_25 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 80:
+
+Branch lengths and linkages for tree #80
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 22 23 0 0 0
+ 20 22 2 2 2
+ 19 20 3 3 3
+ 18 19 0 0 1
+ 17 18 2 2 2
+ 16 17 0 0 1
+H002 (1) 16 0 0 0
+ 15 16 1 1 1
+H008 (4) 15 1 1 1
+H014 (5) 15 1 1 1
+H006 (13) 16 1 1 1
+H009 (12) 17 1 0 1
+H007 (3) 18 1 0 1
+H012 (11) 19 1 1 1
+H011 (14) 19 0 0 0
+H013 (6) 20 0 0 0
+H001 (7) 22 2 2 2
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (10) 21 1 1 1
+H000 (9) 22 0 0 0
+H010 (2) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.8095
+Rescaled consistency index (RC) = 0.4857
+
+ /---------------- H002
+ |
+ | /-------- H008
+ /------16------15
+ | | \-------- H014
+ | |
+ /------17 \---------------- H006
+ | |
+ /-------18 \------------------------ H009
+ | |
+ | \-------------------------------- H007
+ /------19
+ | +----------------------------------------- H012
+ | |
+ /------20 \----------------------------------------- H011
+ | |
+ | \------------------------------------------------- H013
+ |
+ +--------------------------------------------------------- H001
+ /------22
+ | | /-------- H003
+ | +-----------------------------------------------21
+ | | \-------- H005
+-------23 |
+ | \--------------------------------------------------------- H000
+ |
+ \----------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_20 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_20 --> node_19 8 1 1.000 2 ==> 1
+ 9 1 0.500 2 ==> 1
+ 10 1 0.500 2 ==> 1
+ node_18 --> node_17 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_16 --> node_15 9 1 0.500 1 ==> 2
+ node_15 --> H008 11 1 0.333 2 ==> 1
+ node_15 --> H014 10 1 0.500 1 ==> 2
+ node_16 --> H006 11 1 0.333 2 ==> 1
+ node_17 --> H009 12 1 0.333 2 --> 1
+ node_18 --> H007 12 1 0.333 2 --> 1
+ node_19 --> H012 11 1 0.333 2 ==> 1
+ node_22 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 81:
+
+Branch lengths and linkages for tree #81
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 22 23 0 0 0
+ 20 22 2 2 2
+ 19 20 3 3 3
+ 18 19 0 0 1
+ 17 18 2 2 2
+ 16 17 0 0 1
+H002 (1) 16 0 0 0
+ 15 16 1 1 1
+H008 (4) 15 1 1 1
+H014 (5) 15 1 1 1
+H009 (12) 16 1 1 1
+H006 (13) 17 1 0 1
+H012 (11) 18 1 0 1
+H007 (3) 19 1 1 1
+H011 (14) 19 0 0 0
+H013 (6) 20 0 0 0
+H001 (7) 22 2 2 2
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (10) 21 1 1 1
+H000 (9) 22 0 0 0
+H010 (2) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.8095
+Rescaled consistency index (RC) = 0.4857
+
+ /---------------- H002
+ |
+ | /-------- H008
+ /------16------15
+ | | \-------- H014
+ | |
+ /------17 \---------------- H009
+ | |
+ /-------18 \------------------------ H006
+ | |
+ | \-------------------------------- H012
+ /------19
+ | +----------------------------------------- H007
+ | |
+ /------20 \----------------------------------------- H011
+ | |
+ | \------------------------------------------------- H013
+ |
+ +--------------------------------------------------------- H001
+ /------22
+ | | /-------- H003
+ | +-----------------------------------------------21
+ | | \-------- H005
+-------23 |
+ | \--------------------------------------------------------- H000
+ |
+ \----------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_20 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_20 --> node_19 8 1 1.000 2 ==> 1
+ 9 1 0.500 2 ==> 1
+ 10 1 0.500 2 ==> 1
+ node_18 --> node_17 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_16 --> node_15 9 1 0.500 1 ==> 2
+ node_15 --> H008 11 1 0.333 2 ==> 1
+ node_15 --> H014 10 1 0.500 1 ==> 2
+ node_16 --> H009 12 1 0.333 2 ==> 1
+ node_17 --> H006 11 1 0.333 2 --> 1
+ node_18 --> H012 11 1 0.333 2 --> 1
+ node_19 --> H007 12 1 0.333 2 ==> 1
+ node_22 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 82:
+
+Branch lengths and linkages for tree #82
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 25 root 0 0 0
+ 24 25 0 0 0
+ 22 24 2 2 2
+ 21 22 3 3 3
+ 20 21 1 1 2
+ 19 20 1 1 1
+ 18 19 0 0 1
+ 15 18 0 0 1
+H002 (1) 15 0 0 0
+H009 (12) 15 1 1 1
+ 17 18 2 2 2
+ 16 17 0 0 1
+H007 (3) 16 1 1 1
+H011 (14) 16 0 0 0
+H012 (11) 17 1 0 1
+H006 (13) 19 1 0 1
+H008 (4) 20 1 0 1
+H014 (5) 21 0 0 0
+H001 (7) 22 0 0 0
+H013 (6) 24 2 2 2
+ 23 24 1 1 1
+H003 (8) 23 1 1 1
+H005 (10) 23 1 1 1
+H000 (9) 24 0 0 0
+H010 (2) 25 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.8095
+Rescaled consistency index (RC) = 0.4857
+
+ /------- H002
+ /-------------15
+ | \------- H009
+ |
+ /-----18 /------- H007
+ | | /------16
+ | | | \------- H011
+ /-----19 \-----17
+ | | \--------------- H012
+ | |
+ /------20 \----------------------------- H006
+ | |
+ /-----21 \------------------------------------ H008
+ | |
+ /-----22 \-------------------------------------------- H014
+ | |
+ | \--------------------------------------------------- H001
+ |
+ +---------------------------------------------------------- H013
+ /------24
+ | | /------- H003
+ | +-------------------------------------------------23
+ | | \------- H005
+------25 |
+ | \---------------------------------------------------------- H000
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_24 --> node_22 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_22 --> node_21 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_21 --> node_20 10 1 1.000 2 ==> 1
+ node_20 --> node_19 9 1 1.000 2 ==> 1
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_18 --> node_17 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 ==> 1
+ node_17 --> H012 11 1 0.333 2 --> 1
+ node_19 --> H006 11 1 0.333 2 --> 1
+ node_20 --> H008 11 1 0.333 2 --> 1
+ node_24 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ node_24 --> node_23 3 1 1.000 2 ==> 1
+ node_23 --> H003 4 1 1.000 2 ==> 1
+ node_23 --> H005 12 1 0.333 2 ==> 1
+ node_25 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 83:
+
+Branch lengths and linkages for tree #83
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 26 root 0 0 0
+ 25 26 0 0 0
+ 23 25 0 0 2
+ 22 23 2 2 2
+ 21 22 3 1 3
+ 20 21 1 1 2
+ 19 20 1 1 1
+ 18 19 0 0 1
+ 15 18 0 0 1
+H002 (1) 15 0 0 0
+H009 (12) 15 1 1 1
+ 17 18 2 2 2
+ 16 17 0 0 1
+H007 (3) 16 1 1 1
+H011 (14) 16 0 0 0
+H012 (11) 17 1 0 1
+H006 (13) 19 1 0 1
+H008 (4) 20 1 0 1
+H014 (5) 21 0 0 0
+H001 (7) 22 0 0 2
+H013 (6) 23 2 0 2
+ 24 25 1 1 1
+H003 (8) 24 1 1 1
+H005 (10) 24 1 1 1
+H000 (9) 25 0 0 0
+H010 (2) 26 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.8095
+Rescaled consistency index (RC) = 0.4857
+
+ /------- H002
+ /-----------15
+ | \------- H009
+ |
+ /-----18 /------- H007
+ | | /----16
+ | | | \------- H011
+ /----19 \-----17
+ | | \------------- H012
+ | |
+ /-----20 \--------------------------- H006
+ | |
+ /----21 \--------------------------------- H008
+ | |
+ /-----22 \---------------------------------------- H014
+ | |
+ /-----23 \---------------------------------------------- H001
+ | |
+ | \----------------------------------------------------- H013
+ |
+ /----25 /------- H003
+ | +---------------------------------------------------24
+ | | \------- H005
+------26 |
+ | \------------------------------------------------------------ H000
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_22 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_22 --> node_21 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_21 --> node_20 10 1 1.000 2 ==> 1
+ node_20 --> node_19 9 1 1.000 2 ==> 1
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_18 --> node_17 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 ==> 1
+ node_17 --> H012 11 1 0.333 2 --> 1
+ node_19 --> H006 11 1 0.333 2 --> 1
+ node_20 --> H008 11 1 0.333 2 --> 1
+ node_23 --> H013 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ node_25 --> node_24 3 1 1.000 2 ==> 1
+ node_24 --> H003 4 1 1.000 2 ==> 1
+ node_24 --> H005 12 1 0.333 2 ==> 1
+ node_26 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 84:
+
+Branch lengths and linkages for tree #84
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 25 root 0 0 0
+ 24 25 0 0 0
+ 22 24 2 2 2
+ 21 22 3 3 3
+ 20 21 1 1 2
+ 19 20 1 1 1
+ 15 19 0 0 1
+H002 (1) 15 0 0 0
+H009 (12) 15 1 1 1
+ 18 19 0 0 1
+ 17 18 2 2 2
+ 16 17 0 0 1
+H007 (3) 16 1 1 1
+H011 (14) 16 0 0 0
+H012 (11) 17 1 0 1
+H006 (13) 18 1 0 1
+H008 (4) 20 1 0 1
+H014 (5) 21 0 0 0
+H001 (7) 22 0 0 0
+H013 (6) 24 2 2 2
+ 23 24 1 1 1
+H003 (8) 23 1 1 1
+H005 (10) 23 1 1 1
+H000 (9) 24 0 0 0
+H010 (2) 25 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.8095
+Rescaled consistency index (RC) = 0.4857
+
+ /------- H002
+ /--------------------15
+ | \------- H009
+ |
+ | /------- H007
+ /-----19 /------16
+ | | | \------- H011
+ | | /-----17
+ | | | \--------------- H012
+ /------20 \-----18
+ | | \---------------------- H006
+ | |
+ /-----21 \------------------------------------ H008
+ | |
+ /-----22 \-------------------------------------------- H014
+ | |
+ | \--------------------------------------------------- H001
+ |
+ +---------------------------------------------------------- H013
+ /------24
+ | | /------- H003
+ | +-------------------------------------------------23
+ | | \------- H005
+------25 |
+ | \---------------------------------------------------------- H000
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_24 --> node_22 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_22 --> node_21 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_21 --> node_20 10 1 1.000 2 ==> 1
+ node_20 --> node_19 9 1 1.000 2 ==> 1
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_18 --> node_17 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 ==> 1
+ node_17 --> H012 11 1 0.333 2 --> 1
+ node_18 --> H006 11 1 0.333 2 --> 1
+ node_20 --> H008 11 1 0.333 2 --> 1
+ node_24 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ node_24 --> node_23 3 1 1.000 2 ==> 1
+ node_23 --> H003 4 1 1.000 2 ==> 1
+ node_23 --> H005 12 1 0.333 2 ==> 1
+ node_25 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 85:
+
+Branch lengths and linkages for tree #85
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 26 root 0 0 0
+ 25 26 0 0 0
+ 23 25 0 0 2
+ 22 23 2 2 2
+ 21 22 3 1 3
+ 20 21 1 1 2
+ 19 20 1 1 1
+ 15 19 0 0 1
+H002 (1) 15 0 0 0
+H009 (12) 15 1 1 1
+ 18 19 0 0 1
+ 17 18 2 2 2
+ 16 17 0 0 1
+H007 (3) 16 1 1 1
+H011 (14) 16 0 0 0
+H012 (11) 17 1 0 1
+H006 (13) 18 1 0 1
+H008 (4) 20 1 0 1
+H014 (5) 21 0 0 0
+H001 (7) 22 0 0 2
+H013 (6) 23 2 0 2
+ 24 25 1 1 1
+H003 (8) 24 1 1 1
+H005 (10) 24 1 1 1
+H000 (9) 25 0 0 0
+H010 (2) 26 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.8095
+Rescaled consistency index (RC) = 0.4857
+
+ /------- H002
+ /------------------15
+ | \------- H009
+ |
+ | /------- H007
+ /----19 /----16
+ | | | \------- H011
+ | | /-----17
+ | | | \------------- H012
+ /-----20 \-----18
+ | | \-------------------- H006
+ | |
+ /----21 \--------------------------------- H008
+ | |
+ /-----22 \---------------------------------------- H014
+ | |
+ /-----23 \---------------------------------------------- H001
+ | |
+ | \----------------------------------------------------- H013
+ |
+ /----25 /------- H003
+ | +---------------------------------------------------24
+ | | \------- H005
+------26 |
+ | \------------------------------------------------------------ H000
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_22 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_22 --> node_21 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_21 --> node_20 10 1 1.000 2 ==> 1
+ node_20 --> node_19 9 1 1.000 2 ==> 1
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_18 --> node_17 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 ==> 1
+ node_17 --> H012 11 1 0.333 2 --> 1
+ node_18 --> H006 11 1 0.333 2 --> 1
+ node_20 --> H008 11 1 0.333 2 --> 1
+ node_23 --> H013 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ node_25 --> node_24 3 1 1.000 2 ==> 1
+ node_24 --> H003 4 1 1.000 2 ==> 1
+ node_24 --> H005 12 1 0.333 2 ==> 1
+ node_26 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 86:
+
+Branch lengths and linkages for tree #86
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 25 root 0 0 0
+ 24 25 0 0 0
+ 22 24 0 0 2
+ 21 22 2 2 2
+ 20 21 3 1 3
+ 19 20 1 1 1
+ 18 19 1 1 1
+H002 (1) 18 0 0 0
+ 17 18 0 0 1
+ 16 17 2 2 2
+ 15 16 0 0 1
+H007 (3) 15 1 1 1
+H011 (14) 15 0 0 0
+H012 (11) 16 1 0 1
+H006 (13) 17 1 0 1
+H009 (12) 18 1 1 1
+H008 (4) 19 1 1 1
+H014 (5) 20 0 0 0
+H001 (7) 21 0 0 2
+H013 (6) 22 2 0 2
+ 23 24 1 1 1
+H003 (8) 23 1 1 1
+H005 (10) 23 1 1 1
+H000 (9) 24 0 0 0
+H010 (2) 25 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.8095
+Rescaled consistency index (RC) = 0.4857
+
+ /--------------------------- H002
+ |
+ | /------- H007
+ | /----15
+ | | \------- H011
+ /----18 /-----16
+ | | | \------------- H012
+ | +-----17
+ | | \-------------------- H006
+ /-----19 |
+ | | \--------------------------- H009
+ | |
+ /----20 \--------------------------------- H008
+ | |
+ /-----21 \---------------------------------------- H014
+ | |
+ /-----22 \---------------------------------------------- H001
+ | |
+ | \----------------------------------------------------- H013
+ |
+ /----24 /------- H003
+ | +---------------------------------------------------23
+ | | \------- H005
+------25 |
+ | \------------------------------------------------------------ H000
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_21 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_21 --> node_20 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_20 --> node_19 10 1 1.000 2 ==> 1
+ node_19 --> node_18 9 1 1.000 2 ==> 1
+ node_17 --> node_16 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ node_16 --> H012 11 1 0.333 2 --> 1
+ node_17 --> H006 11 1 0.333 2 --> 1
+ node_18 --> H009 12 1 0.333 2 ==> 1
+ node_19 --> H008 11 1 0.333 2 ==> 1
+ node_22 --> H013 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ node_24 --> node_23 3 1 1.000 2 ==> 1
+ node_23 --> H003 4 1 1.000 2 ==> 1
+ node_23 --> H005 12 1 0.333 2 ==> 1
+ node_25 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 87:
+
+Branch lengths and linkages for tree #87
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 24 root 0 0 0
+ 23 24 0 0 0
+ 21 23 2 2 2
+ 20 21 3 3 3
+ 19 20 1 1 2
+ 18 19 1 1 1
+ 15 18 0 0 1
+H002 (1) 15 0 0 0
+H009 (12) 15 1 1 1
+ 17 18 2 2 2
+ 16 17 0 0 1
+H007 (3) 16 1 1 1
+H011 (14) 16 0 0 0
+H012 (11) 17 1 0 1
+H006 (13) 18 1 0 1
+H008 (4) 19 1 0 1
+H014 (5) 20 0 0 0
+H001 (7) 21 0 0 0
+H013 (6) 23 2 2 2
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (10) 22 1 1 1
+H000 (9) 23 0 0 0
+H010 (2) 24 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.8095
+Rescaled consistency index (RC) = 0.4857
+
+ /-------- H002
+ /--------------15
+ | \-------- H009
+ |
+ | /-------- H007
+ | /------16
+ /------18 | \-------- H011
+ | +------17
+ | | \---------------- H012
+ /-------19 |
+ | | \------------------------ H006
+ | |
+ /------20 \-------------------------------- H008
+ | |
+ /------21 \----------------------------------------- H014
+ | |
+ | \------------------------------------------------- H001
+ |
+ +--------------------------------------------------------- H013
+ /------23
+ | | /-------- H003
+ | +-----------------------------------------------22
+ | | \-------- H005
+-------24 |
+ | \--------------------------------------------------------- H000
+ |
+ \----------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_21 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_21 --> node_20 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_20 --> node_19 10 1 1.000 2 ==> 1
+ node_19 --> node_18 9 1 1.000 2 ==> 1
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_18 --> node_17 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 ==> 1
+ node_17 --> H012 11 1 0.333 2 --> 1
+ node_18 --> H006 11 1 0.333 2 --> 1
+ node_19 --> H008 11 1 0.333 2 --> 1
+ node_23 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+ node_24 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 88:
+
+Branch lengths and linkages for tree #88
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 25 root 0 0 0
+ 24 25 0 0 0
+ 22 24 0 0 2
+ 21 22 2 2 2
+ 20 21 3 1 3
+ 19 20 1 1 2
+ 18 19 1 1 1
+ 15 18 0 0 1
+H002 (1) 15 0 0 0
+H009 (12) 15 1 1 1
+ 17 18 2 2 2
+ 16 17 0 0 1
+H007 (3) 16 1 1 1
+H011 (14) 16 0 0 0
+H012 (11) 17 1 0 1
+H006 (13) 18 1 0 1
+H008 (4) 19 1 0 1
+H014 (5) 20 0 0 0
+H001 (7) 21 0 0 2
+H013 (6) 22 2 0 2
+ 23 24 1 1 1
+H003 (8) 23 1 1 1
+H005 (10) 23 1 1 1
+H000 (9) 24 0 0 0
+H010 (2) 25 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.8095
+Rescaled consistency index (RC) = 0.4857
+
+ /------- H002
+ /-------------15
+ | \------- H009
+ |
+ | /------- H007
+ | /------16
+ /-----18 | \------- H011
+ | +-----17
+ | | \--------------- H012
+ /-----19 |
+ | | \---------------------- H006
+ | |
+ /------20 \----------------------------- H008
+ | |
+ /-----21 \------------------------------------ H014
+ | |
+ /-----22 \-------------------------------------------- H001
+ | |
+ | \--------------------------------------------------- H013
+ |
+ /------24 /------- H003
+ | +-------------------------------------------------23
+ | | \------- H005
+------25 |
+ | \---------------------------------------------------------- H000
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_21 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_21 --> node_20 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_20 --> node_19 10 1 1.000 2 ==> 1
+ node_19 --> node_18 9 1 1.000 2 ==> 1
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_18 --> node_17 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 ==> 1
+ node_17 --> H012 11 1 0.333 2 --> 1
+ node_18 --> H006 11 1 0.333 2 --> 1
+ node_19 --> H008 11 1 0.333 2 --> 1
+ node_22 --> H013 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ node_24 --> node_23 3 1 1.000 2 ==> 1
+ node_23 --> H003 4 1 1.000 2 ==> 1
+ node_23 --> H005 12 1 0.333 2 ==> 1
+ node_25 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 89:
+
+Branch lengths and linkages for tree #89
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 24 root 0 0 0
+ 23 24 0 0 0
+ 21 23 2 2 2
+ 20 21 3 3 3
+ 19 20 1 1 1
+ 18 19 1 1 1
+H002 (1) 18 0 0 0
+ 17 18 0 0 1
+ 16 17 2 2 2
+ 15 16 0 0 1
+H007 (3) 15 1 1 1
+H011 (14) 15 0 0 0
+H012 (11) 16 1 0 1
+H006 (13) 17 1 0 1
+H009 (12) 18 1 1 1
+H008 (4) 19 1 1 1
+H014 (5) 20 0 0 0
+H001 (7) 21 0 0 0
+H013 (6) 23 2 2 2
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (10) 22 1 1 1
+H000 (9) 23 0 0 0
+H010 (2) 24 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.8095
+Rescaled consistency index (RC) = 0.4857
+
+ /----------------------------- H002
+ |
+ | /------- H007
+ | /------15
+ | | \------- H011
+ /-----18 /-----16
+ | | | \--------------- H012
+ | +-----17
+ | | \---------------------- H006
+ /------19 |
+ | | \----------------------------- H009
+ | |
+ /-----20 \------------------------------------ H008
+ | |
+ /-----21 \-------------------------------------------- H014
+ | |
+ | \--------------------------------------------------- H001
+ |
+ +---------------------------------------------------------- H013
+ /------23
+ | | /------- H003
+ | +-------------------------------------------------22
+ | | \------- H005
+------24 |
+ | \---------------------------------------------------------- H000
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_21 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_21 --> node_20 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_20 --> node_19 10 1 1.000 2 ==> 1
+ node_19 --> node_18 9 1 1.000 2 ==> 1
+ node_17 --> node_16 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ node_16 --> H012 11 1 0.333 2 --> 1
+ node_17 --> H006 11 1 0.333 2 --> 1
+ node_18 --> H009 12 1 0.333 2 ==> 1
+ node_19 --> H008 11 1 0.333 2 ==> 1
+ node_23 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+ node_24 --> H010 5 1 1.000 2 ==> 1
diff --git a/trunk/test/paup/ancestor_present/association/test.tree b/trunk/test/paup/ancestor_present/association/test.tree
new file mode 100644
index 0000000000000000000000000000000000000000..7cb65888a943298c092812af99a50a117cdcd6c4
--- /dev/null
+++ b/trunk/test/paup/ancestor_present/association/test.tree
@@ -0,0 +1,120 @@
+#NEXUS
+
+Begin trees; [Treefile saved Thu Jan 12 21:56:48 2006]
+[!
+>Data file = /home/cbardel/recherche/logiciel/altree/test/paup/ancestor_present/association/caco.paup
+>Heuristic search settings:
+> Optimality criterion = parsimony
+> Character-status summary:
+> Of 12 total characters:
+> All characters are of type 'unord'
+> All characters have equal weight
+> 2 characters are parsimony-uninformative
+> Number of parsimony-informative characters = 10
+> Starting tree(s) obtained via stepwise addition
+> Addition sequence: simple (reference taxon = H002)
+> Number of trees held at each step during stepwise addition = 1
+> Branch-swapping algorithm: tree-bisection-reconnection (TBR)
+> Steepest descent option not in effect
+> 'MaxTrees' setting = 2000 (will not be increased)
+> Branches collapsed (creating polytomies) if maximum branch length is zero
+> 'MulTrees' option in effect
+> Topological constraints not enforced
+> Trees are unrooted
+>
+>Heuristic search completed
+> Total number of rearrangements tried = 90130
+> Score of best tree(s) found = 20
+> Number of trees retained = 89
+> Time used = 1 sec (CPU time = 0.12 sec)
+]
+tree PAUP_1 = [&R] (((((H002,(H007,H012,H011),(H008,H006),H009),H014),H013),H001,(H003,H005),H000),H010);
+tree PAUP_2 = [&R] ((((((H002,(H008,H006),H009),(H007,H012,H011)),H014),H013),H001,(H003,H005),H000),H010);
+tree PAUP_3 = [&R] ((((((H002,(H007,H012,H011),(H008,H006),H009),H014),H013),H001),(H003,H005),H000),H010);
+tree PAUP_4 = [&R] (((((H002,((H007,(H012,H011)),H009),(H008,H006)),H014),H013),H001,(H003,H005),H000),H010);
+tree PAUP_5 = [&R] ((((((H002,(H008,H006),H009),H014),(H007,H012,H011)),H013),H001,(H003,H005),H000),H010);
+tree PAUP_6 = [&R] (((((H002,(((H007,H011),H012),(H008,H006)),H009),H014),H013),H001,(H003,H005),H000),H010);
+tree PAUP_7 = [&R] (((((H002,(((H007,H011),H012),H008,H006),H009),H014),H013),H001,(H003,H005),H000),H010);
+tree PAUP_8 = [&R] ((((((H002,((H007,(H012,H011)),H009)),(H008,H006)),H014),H013),H001,(H003,H005),H000),H010);
+tree PAUP_9 = [&R] ((((((((H002,(H008,H006)),H009),H007),H012,H011),H014),H013),H001,(H003,H005),H000),H010);
+tree PAUP_10 = [&R] ((((((H002,(H008,H006),H009),H007,H012,H011),H014),H013),H001,(H003,H005),H000),H010);
+tree PAUP_11 = [&R] (((((((H002,((H007,(H012,H011)),H009)),H006),H008),H014),H013),H001,(H003,H005),H000),H010);
+tree PAUP_12 = [&R] (((((H002,(H008,H006),H014,H009),H007,H012,H011),H013),H001,(H003,H005),H000),H010);
+tree PAUP_13 = [&R] (((((H002,(H007,H012,H011),(H008,H006),H009),H014),H001),H013,(H003,H005),H000),H010);
+tree PAUP_14 = [&R] ((((((H002,(H007,H012,H011),(H008,H006),H009),H014),H001),H013),(H003,H005),H000),H010);
+tree PAUP_15 = [&R] ((((((H002,(H007,H012,H011),H009),(H008,H006)),H014),H013),H001,(H003,H005),H000),H010);
+tree PAUP_16 = [&R] ((((((H002,(H007,H012,H011),H009,H006),H008),H014),H013),H001,(H003,H005),H000),H010);
+tree PAUP_17 = [&R] (((((((H002,(H008,H006),H009),(H007,H012,H011)),H014),H013),H001),(H003,H005),H000),H010);
+tree PAUP_18 = [&R] (((((((H002,(H007,H012,H011),H009),(H008,H006)),H014),H013),H001),(H003,H005),H000),H010);
+tree PAUP_19 = [&R] ((((((((H002,(H007,H012,H011),H009),H006),H008),H014),H013),H001),(H003,H005),H000),H010);
+tree PAUP_20 = [&R] ((((((H002,(((H007,H011),H012),(H008,H006)),H009),H014),H013),H001),(H003,H005),H000),H010);
+tree PAUP_21 = [&R] ((((((H002,(((H007,H011),H012),H008,H006),H009),H014),H013),H001),(H003,H005),H000),H010);
+tree PAUP_22 = [&R] ((((((H002,((H007,(H012,H011)),H009),(H008,H006)),H014),H013),H001),(H003,H005),H000),H010);
+tree PAUP_23 = [&R] ((((((((H002,H009),(H008,H006)),H012),H007,H011),H014),H013),H001,(H003,H005),H000),H010);
+tree PAUP_24 = [&R] (((((((H002,H009),(H008,H006)),H014),(H007,H012,H011)),H013),H001,(H003,H005),H000),H010);
+tree PAUP_25 = [&R] ((((((((H002,H009),H008,H006),H012),H007,H011),H014),H013),H001,(H003,H005),H000),H010);
+tree PAUP_26 = [&R] ((((((((H002,H009),H006),H008),H014),(H007,H012,H011)),H013),H001,(H003,H005),H000),H010);
+tree PAUP_27 = [&R] (((((H002,((H008,H006),H014),H009),H007,H012,H011),H013),H001,(H003,H005),H000),H010);
+tree PAUP_28 = [&R] (((((H002,((H008,H014),H006),H009),H007,H012,H011),H013),H001,(H003,H005),H000),H010);
+tree PAUP_29 = [&R] (((((((H002,(H007,H012,H011),H009,H006),H008),H014),H013),H001),(H003,H005),H000),H010);
+tree PAUP_30 = [&R] ((((((H002,H009),(H008,H006),H014),(H007,H012,H011)),H013),H001,(H003,H005),H000),H010);
+tree PAUP_31 = [&R] (((((((H002,((H007,(H012,H011)),H009)),(H008,H006)),H014),H013),H001),(H003,H005),H000),H010);
+tree PAUP_32 = [&R] (((((((H002,H009),((((H007,H011),H012),H006),H008)),H014),H013),H001),(H003,H005),H000),H010);
+tree PAUP_33 = [&R] ((((((H002,((H007,(H012,H011)),H009),H006),H008),H014),H013),H001,(H003,H005),H000),H010);
+tree PAUP_34 = [&R] (((((H002,((H007,(H012,H011)),H009),(H008,H006)),H014),H001),H013,(H003,H005),H000),H010);
+tree PAUP_35 = [&R] (((((((H002,(H008,H006),H014),H009),H007),H012,H011),H013),H001,(H003,H005),H000),H010);
+tree PAUP_36 = [&R] ((((((H002,((H007,(H012,H011)),H009),(H008,H006)),H014),H001),H013),(H003,H005),H000),H010);
+tree PAUP_37 = [&R] (((((((H002,H014,H009),(H008,H006)),H012),H007,H011),H013),H001,(H003,H005),H000),H010);
+tree PAUP_38 = [&R] ((((((H002,H009),((H008,H006),H014)),(H007,H012,H011)),H013),H001,(H003,H005),H000),H010);
+tree PAUP_39 = [&R] (((((((H002,H009,H006),H008),H014),(H007,H012,H011)),H013),H001,(H003,H005),H000),H010);
+tree PAUP_40 = [&R] ((((((H002,H009,H006),(H008,H014)),(H007,H012,H011)),H013),H001,(H003,H005),H000),H010);
+tree PAUP_41 = [&R] ((((((H002,H009,H006),H008,H014),(H007,H012,H011)),H013),H001,(H003,H005),H000),H010);
+tree PAUP_42 = [&R] (((((((H002,H014,H009),H008,H006),H012),H007,H011),H013),H001,(H003,H005),H000),H010);
+tree PAUP_43 = [&R] ((((((((H002,H009),((H007,H011),H012)),H006),H008),H014),H013),H001,(H003,H005),H000),H010);
+tree PAUP_44 = [&R] ((((((H002,H009),((((H007,H011),H012),H006),H008)),H014),H013),H001,(H003,H005),H000),H010);
+tree PAUP_45 = [&R] (((((((H002,H009),(((H007,H011),H012),H006)),H008),H014),H013),H001,(H003,H005),H000),H010);
+tree PAUP_46 = [&R] (((((H002,(((H007,H011),H012),(H008,H006)),H009),H014),H001),H013,(H003,H005),H000),H010);
+tree PAUP_47 = [&R] ((((((H002,(((H007,H011),H012),(H008,H006)),H009),H014),H001),H013),(H003,H005),H000),H010);
+tree PAUP_48 = [&R] (((((((H002,(H007,H012,H011),H009),H006),H008),H014),H013),H001,(H003,H005),H000),H010);
+tree PAUP_49 = [&R] ((((((H002,((H007,(H012,H011)),H009)),(H008,H006)),H014),H001),H013,(H003,H005),H000),H010);
+tree PAUP_50 = [&R] (((((((H002,((H008,H006),H014)),H009),H007),H012,H011),H013),H001,(H003,H005),H000),H010);
+tree PAUP_51 = [&R] (((((((H002,((H007,(H012,H011)),H009)),(H008,H006)),H014),H001),H013),(H003,H005),H000),H010);
+tree PAUP_52 = [&R] (((((((H002,((H008,H014),H006)),H009),H007),H012,H011),H013),H001,(H003,H005),H000),H010);
+tree PAUP_53 = [&R] (((((((H002,((H007,(H012,H011)),H009)),H006),H008),H014),H001),H013,(H003,H005),H000),H010);
+tree PAUP_54 = [&R] (((((((H002,H009),((H007,H011),H012),H006),H008),H014),H013),H001,(H003,H005),H000),H010);
+tree PAUP_55 = [&R] ((((((((H002,((H007,(H012,H011)),H009)),H006),H008),H014),H013),H001),(H003,H005),H000),H010);
+tree PAUP_56 = [&R] ((((((((H002,((H007,(H012,H011)),H009)),H006),H008),H014),H001),H013),(H003,H005),H000),H010);
+tree PAUP_57 = [&R] (((((((((H002,H009),H014),H008),H006),H012),H007,H011),H013),H001,(H003,H005),H000),H010);
+tree PAUP_58 = [&R] (((((H002,(H008,H014),H009,H006),H007,H012,H011),H013),H001,(H003,H005),H000),H010);
+tree PAUP_59 = [&R] ((((((H002,(H007,H012,H011),H009),(H008,H006)),H014),H001),H013,(H003,H005),H000),H010);
+tree PAUP_60 = [&R] ((((((H002,((H007,(H012,H011)),H009),H006),H008),H014),H001),H013,(H003,H005),H000),H010);
+tree PAUP_61 = [&R] (((((H002,(((H007,H011),H012),H008,H006),H009),H014),H001),H013,(H003,H005),H000),H010);
+tree PAUP_62 = [&R] ((((((H002,(((H007,H011),H012),H008,H006),H009),H014),H001),H013),(H003,H005),H000),H010);
+tree PAUP_63 = [&R] (((((((H002,(H007,H012,H011),H009),(H008,H006)),H014),H001),H013),(H003,H005),H000),H010);
+tree PAUP_64 = [&R] (((((((H002,(H007,H012,H011),H009,H006),H008),H014),H001),H013),(H003,H005),H000),H010);
+tree PAUP_65 = [&R] ((((((H002,(H007,H012,H011),H009,H006),H008),H014),H001),H013,(H003,H005),H000),H010);
+tree PAUP_66 = [&R] ((((((H002,(((H007,H011),H012),H006),H009),H008),H014),H013),H001,(H003,H005),H000),H010);
+tree PAUP_67 = [&R] (((((((((H002,H009),((H007,H011),H012)),H006),H008),H014),H013),H001),(H003,H005),H000),H010);
+tree PAUP_68 = [&R] (((((((H002,(((H007,H011),H012),H006),H009),H008),H014),H013),H001),(H003,H005),H000),H010);
+tree PAUP_69 = [&R] (((((((H002,(H007,H012,H011),H009),H006),H008),H014),H001),H013,(H003,H005),H000),H010);
+tree PAUP_70 = [&R] ((((((((H002,(H007,H012,H011),H009),H006),H008),H014),H001),H013),(H003,H005),H000),H010);
+tree PAUP_71 = [&R] ((((((((H002,H009),(((H007,H011),H012),H006)),H008),H014),H013),H001),(H003,H005),H000),H010);
+tree PAUP_72 = [&R] ((((((((H002,H009),((H007,H011),H012),H006),H008),H014),H013),H001),(H003,H005),H000),H010);
+tree PAUP_73 = [&R] (((((((H002,((H007,(H012,H011)),H009),H006),H008),H014),H013),H001),(H003,H005),H000),H010);
+tree PAUP_74 = [&R] (((((((H002,H009),((H008,H014),H006)),H012),H007,H011),H013),H001,(H003,H005),H000),H010);
+tree PAUP_75 = [&R] ((((((((H002,H009),(H008,H014)),H006),H012),H007,H011),H013),H001,(H003,H005),H000),H010);
+tree PAUP_76 = [&R] (((((((H002,H009),(H008,H014),H006),H012),H007,H011),H013),H001,(H003,H005),H000),H010);
+tree PAUP_77 = [&R] ((((((H002,H009),((((H007,H011),H012),H006),H008)),H014),H001),H013,(H003,H005),H000),H010);
+tree PAUP_78 = [&R] (((((((H002,H009),((((H007,H011),H012),H006),H008)),H014),H001),H013),(H003,H005),H000),H010);
+tree PAUP_79 = [&R] (((((((H002,((H007,(H012,H011)),H009),H006),H008),H014),H001),H013),(H003,H005),H000),H010);
+tree PAUP_80 = [&R] (((((((H002,(H008,H014),H006),H009),H007),H012,H011),H013),H001,(H003,H005),H000),H010);
+tree PAUP_81 = [&R] (((((((H002,(H008,H014),H009),H006),H012),H007,H011),H013),H001,(H003,H005),H000),H010);
+tree PAUP_82 = [&R] ((((((((H002,H009),((H007,H011),H012)),H006),H008),H014),H001),H013,(H003,H005),H000),H010);
+tree PAUP_83 = [&R] (((((((((H002,H009),((H007,H011),H012)),H006),H008),H014),H001),H013),(H003,H005),H000),H010);
+tree PAUP_84 = [&R] (((((((H002,H009),(((H007,H011),H012),H006)),H008),H014),H001),H013,(H003,H005),H000),H010);
+tree PAUP_85 = [&R] ((((((((H002,H009),(((H007,H011),H012),H006)),H008),H014),H001),H013),(H003,H005),H000),H010);
+tree PAUP_86 = [&R] (((((((H002,(((H007,H011),H012),H006),H009),H008),H014),H001),H013),(H003,H005),H000),H010);
+tree PAUP_87 = [&R] (((((((H002,H009),((H007,H011),H012),H006),H008),H014),H001),H013,(H003,H005),H000),H010);
+tree PAUP_88 = [&R] ((((((((H002,H009),((H007,H011),H012),H006),H008),H014),H001),H013),(H003,H005),H000),H010);
+tree PAUP_89 = [&R] ((((((H002,(((H007,H011),H012),H006),H009),H008),H014),H001),H013,(H003,H005),H000),H010);
+End;
diff --git a/trunk/test/paup/ancestor_present/localisation/caco.loc b/trunk/test/paup/ancestor_present/localisation/caco.loc
new file mode 100644
index 0000000000000000000000000000000000000000..f79bc37e15c57ef83fc112bdf82c9f38e891d978
--- /dev/null
+++ b/trunk/test/paup/ancestor_present/localisation/caco.loc
@@ -0,0 +1,27 @@
+Localisation method using S-character
+
+Results:
+site number 10 sens 2-->1 V_i = 3.32820117735137
+site number 11 sens 1-->2 V_i = 0.792593923901217
+site number 12 sens 1-->2 V_i = 0.792593923901217
+site number 4 sens 2-->1 V_i = -0.277350098112615
+site number 5 sens 2-->1 V_i = -0.277350098112615
+site number 3 sens 2-->1 V_i = -0.277350098112615
+site number 9 sens 2-->1 V_i = -0.277350098112615
+site number 8 sens 2-->1 V_i = -0.277350098112615
+site number 6 sens 2-->1 V_i = -0.392232270276368
+site number 8 sens 1-->2 V_i = -0.392232270276368
+site number 7 sens 2-->1 V_i = -0.392232270276368
+site number 4 sens 1-->2 V_i = -0.392232270276368
+site number 3 sens 1-->2 V_i = -0.392232270276368
+site number 10 sens 1-->2 V_i = -0.392232270276368
+site number 9 sens 1-->2 V_i = -0.392232270276368
+site number 5 sens 1-->2 V_i = -0.392232270276368
+site number 11 sens 2-->1 V_i = -0.480384461415261
+site number 2 sens 2-->1 V_i = -0.480384461415261
+site number 12 sens 2-->1 V_i = -0.480384461415261
+site number 2 sens 1-->2 V_i = -0.480384461415261
+site number 1 sens 2-->1 V_i = -0.480384461415261
+site number 1 sens 1-->2 V_i = -0.480384461415261
+site number 7 sens 1-->2 V_i = -0.554700196225229
+site number 6 sens 1-->2 V_i = -0.554700196225229
diff --git a/trunk/test/paup/ancestor_present/localisation/caco.paup b/trunk/test/paup/ancestor_present/localisation/caco.paup
new file mode 100644
index 0000000000000000000000000000000000000000..23216c4a176220bcc898ec6c95158496b32dd2d6
--- /dev/null
+++ b/trunk/test/paup/ancestor_present/localisation/caco.paup
@@ -0,0 +1,38 @@
+#Nexus
+Begin data;
+dimension ntax=14 nchar=12;
+format symbols="0123456789" missing=?;
+matrix
+H002 112221111122
+H010 222212222222
+H007 222221111121
+H008 112221112112
+H014 112221112222
+H013 222221122222
+H001 112222222222
+H003 221122222222
+H000 222222222222
+H005 221222222221
+H012 222221111112
+H009 112221111121
+H006 112221111112
+H011 222221111122
+;
+end;
+begin assumptions;
+ancstates *anc vector = 222222222222;
+end;
+begin paup;
+set nowarnreset autoclose maxtrees = 2000 increase= no [- Auto AutoInc = 100] monitor = no taxlabels = full
+root=lundberg warnroot=no opt=deltran [- acctran] ancstates=anc;
+hsearch;
+savetrees from=1 to=1000 file= test.tree root=yes format=altnexus;
+cleartrees nowarn=yes;
+gettrees rooted=yes file=test.tree;
+log file = test.res.log replace= yes [- no];
+describetrees all /plot=cladogram [- phylogram] brlens=yes
+rootmethod=lundberg apolist=yes;
+log stop;
+end;
+quit;
+[WARNING, this file is designed for bi-allelic data. If it is not the case, you may have to modify this input file, for example by specifying the ordered option in the typeset command in the assumption block]
diff --git a/trunk/test/paup/ancestor_present/localisation/et_caco.paup b/trunk/test/paup/ancestor_present/localisation/et_caco.paup
new file mode 100644
index 0000000000000000000000000000000000000000..1b53f941e06112bbcb993a564dec1be47d575c36
--- /dev/null
+++ b/trunk/test/paup/ancestor_present/localisation/et_caco.paup
@@ -0,0 +1,40 @@
+#Nexus
+Begin data;
+dimension ntax=14 nchar=13;
+format symbols="0123456789CG" missing=?;
+matrix
+H002 112221111122?
+H010 222212222222?
+H007 2222211111210
+H008 1122211121121
+H014 112221112222?
+H013 222221122222?
+H001 112222222222?
+H003 221122222222?
+H000 2222222222220
+H005 221222222221?
+H012 2222211111120
+H009 1122211111211
+H006 1122211111121
+H011 2222211111221
+;
+end;
+begin assumptions;
+ancstates *anc vector = 222222222222?;
+end;
+begin paup;
+exclude 13;
+set nowarnreset autoclose maxtrees = 2000 increase= no [- Auto AutoInc = 100] monitor = no taxlabels = full
+root=lundberg warnroot=no opt=deltran [- acctran] ancstates=anc;
+hsearch;
+savetrees from=1 to=1000 file= test.tree root=yes format=altnexus;
+cleartrees nowarn=yes;
+gettrees rooted=yes file=test.tree;
+log file = test.res.log replace= yes [- no];
+include 13;
+describetrees all /plot=cladogram [- phylogram] brlens=yes
+rootmethod=lundberg apolist=yes;
+log stop;
+end;
+quit;
+[WARNING, this file is designed for bi-allelic data. If it is not the case, you may have to modify this input file, for example by specifying the ordered option in the typeset command in the assumption block]
diff --git a/trunk/test/paup/ancestor_present/localisation/nb_cas_control.txt b/trunk/test/paup/ancestor_present/localisation/nb_cas_control.txt
new file mode 100644
index 0000000000000000000000000000000000000000..96b01484da94e596349ac0f87a9439e609ea02a0
--- /dev/null
+++ b/trunk/test/paup/ancestor_present/localisation/nb_cas_control.txt
@@ -0,0 +1,14 @@
+H002 m008 c006
+H010 m007 c005
+H007 m007 c013
+H008 m009 c002
+H014 m004 c002
+H013 m002 c004
+H001 m011 c009
+H003 m005 c006
+H000 m098 c126
+H005 m007 c007
+H012 m001 c004
+H009 m008 c002
+H006 m028 c013
+H011 m005 c001
diff --git a/trunk/test/paup/ancestor_present/localisation/run-prog b/trunk/test/paup/ancestor_present/localisation/run-prog
new file mode 100755
index 0000000000000000000000000000000000000000..496037002c23e27375e1d9208eaeab5d8a6ed3ff
--- /dev/null
+++ b/trunk/test/paup/ancestor_present/localisation/run-prog
@@ -0,0 +1,14 @@
+#!/bin/sh -x
+
+# To optain the paup input file containing the S character
+../../../../altree-add-S -i caco.paup -j \
+nb_cas_control.txt -o et_caco.paup -e 1 -t SNP -p 0.5
+
+# To run paup
+paup et_caco.paup
+
+# To perform the localisation test on the 89 equiparsimonious trees
+../../../../altree -i test.res.log \
+-j nb_cas_control.txt -t SNP -p paup --tree-to-analyse 89 \
+--s-site-number 13 --s-site-characters "0->1" \
+--co-evo double -l > caco.loc
diff --git a/trunk/test/paup/ancestor_present/localisation/test.res.log b/trunk/test/paup/ancestor_present/localisation/test.res.log
new file mode 100644
index 0000000000000000000000000000000000000000..431274e793993eca760d8baa87acbea3dc07406d
--- /dev/null
+++ b/trunk/test/paup/ancestor_present/localisation/test.res.log
@@ -0,0 +1,8807 @@
+
+P A U P *
+Portable version 4.0b10 for Unix
+Thu Jan 12 21:57:28 2006
+
+ -----------------------------NOTICE-----------------------------
+ This is a beta-test version. Please report any crashes,
+ apparent calculation errors, or other anomalous results.
+ There are no restrictions on publication of results obtained
+ with this version, but you should check the WWW site
+ frequently for bug announcements and/or updated versions.
+ See the README file on the distribution media for details.
+ ----------------------------------------------------------------
+
+Character-exclusion status changed:
+ 1 character re-included
+ Total number of characters now excluded = 0
+ Number of included characters = 13
+
+Tree description:
+
+ Optimality criterion = parsimony
+ Character-status summary:
+ Of 13 total characters:
+ All characters are of type 'unord'
+ All characters have equal weight
+ 2 characters are parsimony-uninformative
+ Number of parsimony-informative characters = 11
+ Character-state optimization: Delayed transformation (DELTRAN)
+ AncStates = "anc"
+
+Tree number 1:
+
+Branch lengths and linkages for tree #1
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 22 root 0 0 0
+ 21 22 0 0 0
+ 19 21 2 2 3
+ 18 19 3 3 4
+ 17 18 2 2 3
+H002 (1) 17 0 0 0
+ 15 17 2 2 3
+H007 (3) 15 1 1 2
+H012 (11) 15 1 1 2
+H011 (14) 15 1 0 1
+ 16 17 2 1 2
+H008 (4) 16 1 1 1
+H006 (13) 16 0 0 0
+H009 (12) 17 2 1 2
+H014 (5) 18 0 0 0
+H013 (6) 19 0 0 0
+H001 (7) 21 2 2 2
+ 20 21 1 1 1
+H003 (8) 20 1 1 1
+H005 (10) 20 1 1 1
+H000 (9) 21 0 0 1
+H010 (2) 22 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7727
+Rescaled consistency index (RC) = 0.4368
+
+ /--------------------- H002
+ |
+ | /---------- H007
+ | |
+ +---------15---------- H012
+ | |
+ /--------17 \---------- H011
+ | |
+ | | /---------- H008
+ | +---------16
+ /---------18 | \---------- H006
+ | | |
+ | | \--------------------- H009
+ /--------19 |
+ | | \------------------------------- H014
+ | |
+ | \------------------------------------------ H013
+ |
+ +---------------------------------------------------- H001
+ /---------21
+ | | /---------- H003
+ | +----------------------------------------20
+ | | \---------- H005
+---------22 |
+ | \---------------------------------------------------- H000
+ |
+ \--------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_19 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_19 --> node_18 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_18 --> node_17 9 1 0.500 2 ==> 1
+ 10 1 1.000 2 ==> 1
+ node_17 --> node_15 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ node_15 --> H012 11 1 0.500 2 ==> 1
+ node_15 --> H011 13 1 0.333 0 --> 1
+ node_17 --> node_16 11 1 0.500 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_16 --> H008 9 1 0.500 1 ==> 2
+ node_17 --> H009 12 1 0.333 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_21 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_21 --> node_20 3 1 1.000 2 ==> 1
+ node_20 --> H003 4 1 1.000 2 ==> 1
+ node_20 --> H005 12 1 0.333 2 ==> 1
+ node_22 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 2:
+
+Branch lengths and linkages for tree #2
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 22 23 0 0 0
+ 20 22 2 2 2
+ 19 20 1 1 3
+ 18 19 2 2 2
+ 16 18 3 1 3
+H002 (1) 16 0 0 0
+ 15 16 1 1 1
+H008 (4) 15 1 1 1
+H006 (13) 15 0 0 0
+H009 (12) 16 1 1 1
+ 17 18 0 0 2
+H007 (3) 17 1 1 1
+H012 (11) 17 1 1 1
+H011 (14) 17 1 1 1
+H014 (5) 19 2 0 2
+H013 (6) 20 0 0 0
+H001 (7) 22 2 2 2
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (10) 21 1 1 1
+H000 (9) 22 0 0 0
+H010 (2) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 22
+
+Tree length = 22
+Consistency index (CI) = 0.5909
+Homoplasy index (HI) = 0.4091
+CI excluding uninformative characters = 0.5500
+HI excluding uninformative characters = 0.4500
+Retention index (RI) = 0.7955
+Rescaled consistency index (RC) = 0.4700
+
+ /------------------ H002
+ |
+ | /--------- H008
+ /-------16-------15
+ | | \--------- H006
+ | |
+ | \------------------ H009
+ /--------18
+ | | /--------- H007
+ | | |
+ | \----------------17--------- H012
+ /-------19 |
+ | | \--------- H011
+ | |
+ /-------20 \------------------------------------- H014
+ | |
+ | \---------------------------------------------- H013
+ |
+ +------------------------------------------------------- H001
+ /-------22
+ | | /--------- H003
+ | +--------------------------------------------21
+ | | \--------- H005
+--------23 |
+ | \------------------------------------------------------- H000
+ |
+ \---------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_20 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_20 --> node_19 8 1 1.000 2 ==> 1
+ node_19 --> node_18 9 1 0.500 2 ==> 1
+ 10 1 1.000 2 ==> 1
+ node_18 --> node_16 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ 13 1 0.500 0 ==> 1
+ node_16 --> node_15 11 1 0.500 2 ==> 1
+ node_15 --> H008 9 1 0.500 1 ==> 2
+ node_16 --> H009 12 1 0.333 2 ==> 1
+ node_17 --> H007 12 1 0.333 2 ==> 1
+ node_17 --> H012 11 1 0.500 2 ==> 1
+ node_17 --> H011 13 1 0.500 0 ==> 1
+ node_19 --> H014 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ node_22 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 3:
+
+Branch lengths and linkages for tree #3
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 22 23 0 0 0
+ 20 22 0 0 3
+ 19 20 2 2 3
+ 18 19 3 1 4
+ 17 18 2 2 3
+H002 (1) 17 0 0 0
+ 15 17 2 2 3
+H007 (3) 15 1 1 2
+H012 (11) 15 1 1 2
+H011 (14) 15 1 0 1
+ 16 17 2 1 2
+H008 (4) 16 1 1 1
+H006 (13) 16 0 0 0
+H009 (12) 17 2 1 2
+H014 (5) 18 0 0 0
+H013 (6) 19 0 0 2
+H001 (7) 20 2 0 2
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (10) 21 1 1 1
+H000 (9) 22 0 0 1
+H010 (2) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7727
+Rescaled consistency index (RC) = 0.4368
+
+ /------------------ H002
+ |
+ | /--------- H007
+ | |
+ +-------15--------- H012
+ | |
+ /-------17 \--------- H011
+ | |
+ | | /--------- H008
+ | +-------16
+ /--------18 | \--------- H006
+ | | |
+ | | \------------------ H009
+ /-------19 |
+ | | \--------------------------- H014
+ | |
+ /-------20 \------------------------------------- H013
+ | |
+ | \---------------------------------------------- H001
+ |
+ /-------22 /--------- H003
+ | +--------------------------------------------21
+ | | \--------- H005
+--------23 |
+ | \------------------------------------------------------- H000
+ |
+ \---------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_20 --> node_19 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_19 --> node_18 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_18 --> node_17 9 1 0.500 2 ==> 1
+ 10 1 1.000 2 ==> 1
+ node_17 --> node_15 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ node_15 --> H012 11 1 0.500 2 ==> 1
+ node_15 --> H011 13 1 0.333 0 --> 1
+ node_17 --> node_16 11 1 0.500 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_16 --> H008 9 1 0.500 1 ==> 2
+ node_17 --> H009 12 1 0.333 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_20 --> H001 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 4:
+
+Branch lengths and linkages for tree #4
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 24 root 0 0 0
+ 23 24 0 0 0
+ 21 23 2 2 3
+ 20 21 3 3 4
+ 19 20 2 2 3
+H002 (1) 19 0 0 0
+ 17 19 0 0 1
+ 16 17 2 2 3
+H007 (3) 16 1 0 2
+ 15 16 0 0 1
+H012 (11) 15 1 1 2
+H011 (14) 15 1 0 1
+H009 (12) 17 2 0 2
+ 18 19 2 1 2
+H008 (4) 18 1 1 1
+H006 (13) 18 0 0 0
+H014 (5) 20 0 0 0
+H013 (6) 21 0 0 0
+H001 (7) 23 2 2 2
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (10) 22 1 1 1
+H000 (9) 23 0 0 1
+H010 (2) 24 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7727
+Rescaled consistency index (RC) = 0.4368
+
+ /-------------------------------- H002
+ |
+ | /---------------- H007
+ | |
+ | /------16 /-------- H012
+ | | \------15
+ /-------19------17 \-------- H011
+ | | |
+ | | \------------------------ H009
+ | |
+ /------20 | /-------- H008
+ | | \----------------------18
+ | | \-------- H006
+ /------21 |
+ | | \----------------------------------------- H014
+ | |
+ | \------------------------------------------------- H013
+ |
+ +--------------------------------------------------------- H001
+ /------23
+ | | /-------- H003
+ | +-----------------------------------------------22
+ | | \-------- H005
+-------24 |
+ | \--------------------------------------------------------- H000
+ |
+ \----------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_21 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_21 --> node_20 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_20 --> node_19 9 1 0.500 2 ==> 1
+ 10 1 1.000 2 ==> 1
+ node_17 --> node_16 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 --> 1
+ node_15 --> H012 11 1 0.500 2 ==> 1
+ node_15 --> H011 13 1 0.333 0 --> 1
+ node_17 --> H009 12 1 0.333 2 --> 1
+ 13 1 0.333 0 --> 1
+ node_19 --> node_18 11 1 0.500 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_18 --> H008 9 1 0.500 1 ==> 2
+ node_23 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+ node_24 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 5:
+
+Branch lengths and linkages for tree #5
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 22 23 0 0 0
+ 20 22 2 2 2
+ 19 20 1 1 3
+ 17 19 2 2 3
+ 16 17 3 0 3
+H002 (1) 16 0 0 0
+ 15 16 1 1 1
+H008 (4) 15 1 1 1
+H006 (13) 15 0 0 0
+H009 (12) 16 1 1 1
+H014 (5) 17 0 0 2
+ 18 19 2 0 2
+H007 (3) 18 1 1 1
+H012 (11) 18 1 1 1
+H011 (14) 18 1 1 1
+H013 (6) 20 0 0 0
+H001 (7) 22 2 2 2
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (10) 21 1 1 1
+H000 (9) 22 0 0 0
+H010 (2) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 22
+
+Tree length = 22
+Consistency index (CI) = 0.5909
+Homoplasy index (HI) = 0.4091
+CI excluding uninformative characters = 0.5500
+HI excluding uninformative characters = 0.4500
+Retention index (RI) = 0.7955
+Rescaled consistency index (RC) = 0.4700
+
+ /------------------ H002
+ |
+ | /--------- H008
+ /-------16-------15
+ | | \--------- H006
+ | |
+ /--------17 \------------------ H009
+ | |
+ | \--------------------------- H014
+ /-------19
+ | | /--------- H007
+ | | |
+ | \--------------------------18--------- H012
+ /-------20 |
+ | | \--------- H011
+ | |
+ | \---------------------------------------------- H013
+ |
+ +------------------------------------------------------- H001
+ /-------22
+ | | /--------- H003
+ | +--------------------------------------------21
+ | | \--------- H005
+--------23 |
+ | \------------------------------------------------------- H000
+ |
+ \---------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_20 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_20 --> node_19 8 1 1.000 2 ==> 1
+ node_19 --> node_17 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_17 --> node_16 9 1 0.333 2 --> 1
+ 10 1 0.500 2 --> 1
+ 13 1 0.500 0 --> 1
+ node_16 --> node_15 11 1 0.500 2 ==> 1
+ node_15 --> H008 9 1 0.333 1 ==> 2
+ node_16 --> H009 12 1 0.333 2 ==> 1
+ node_19 --> node_18 9 1 0.333 2 --> 1
+ 10 1 0.500 2 --> 1
+ node_18 --> H007 12 1 0.333 2 ==> 1
+ node_18 --> H012 11 1 0.500 2 ==> 1
+ node_18 --> H011 13 1 0.500 0 ==> 1
+ node_22 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 6:
+
+Branch lengths and linkages for tree #6
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 24 root 0 0 0
+ 23 24 0 0 0
+ 21 23 2 2 3
+ 20 21 3 3 4
+ 19 20 2 2 3
+H002 (1) 19 0 0 0
+ 18 19 0 0 1
+ 16 18 2 2 3
+ 15 16 0 0 1
+H007 (3) 15 1 1 2
+H011 (14) 15 1 0 1
+H012 (11) 16 1 0 2
+ 17 18 2 0 2
+H008 (4) 17 1 1 1
+H006 (13) 17 0 0 0
+H009 (12) 19 2 1 2
+H014 (5) 20 0 0 0
+H013 (6) 21 0 0 0
+H001 (7) 23 2 2 2
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (10) 22 1 1 1
+H000 (9) 23 0 0 1
+H010 (2) 24 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7727
+Rescaled consistency index (RC) = 0.4368
+
+ /-------------------------------- H002
+ |
+ | /-------- H007
+ | /------15
+ | | \-------- H011
+ | /------16
+ /-------19 | \---------------- H012
+ | +------18
+ | | | /-------- H008
+ | | \--------------17
+ /------20 | \-------- H006
+ | | |
+ | | \-------------------------------- H009
+ /------21 |
+ | | \----------------------------------------- H014
+ | |
+ | \------------------------------------------------- H013
+ |
+ +--------------------------------------------------------- H001
+ /------23
+ | | /-------- H003
+ | +-----------------------------------------------22
+ | | \-------- H005
+-------24 |
+ | \--------------------------------------------------------- H000
+ |
+ \----------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_21 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_21 --> node_20 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_20 --> node_19 9 1 0.500 2 ==> 1
+ 10 1 1.000 2 ==> 1
+ node_18 --> node_16 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ node_15 --> H011 13 1 0.333 0 --> 1
+ node_16 --> H012 11 1 0.500 2 --> 1
+ node_18 --> node_17 11 1 0.500 2 --> 1
+ 13 1 0.333 0 --> 1
+ node_17 --> H008 9 1 0.500 1 ==> 2
+ node_19 --> H009 12 1 0.333 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_23 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+ node_24 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 7:
+
+Branch lengths and linkages for tree #7
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 22 23 0 0 0
+ 20 22 2 2 3
+ 19 20 3 3 4
+ 18 19 3 2 3
+H002 (1) 18 0 0 0
+ 17 18 1 1 1
+ 16 17 2 2 3
+ 15 16 1 1 1
+H007 (3) 15 2 1 2
+H011 (14) 15 0 0 1
+H012 (11) 16 1 0 1
+H008 (4) 17 1 1 1
+H006 (13) 17 0 0 0
+H009 (12) 18 1 1 1
+H014 (5) 19 0 0 0
+H013 (6) 20 0 0 0
+H001 (7) 22 2 2 2
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (10) 21 1 1 1
+H000 (9) 22 0 0 1
+H010 (2) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7727
+Rescaled consistency index (RC) = 0.4368
+
+ /-------------------------------- H002
+ |
+ | /-------- H007
+ | /------15
+ | | \-------- H011
+ | /------16
+ /-------18 | \---------------- H012
+ | | |
+ | +------17------------------------ H008
+ | | |
+ /------19 | \------------------------ H006
+ | | |
+ | | \-------------------------------- H009
+ /------20 |
+ | | \----------------------------------------- H014
+ | |
+ | \------------------------------------------------- H013
+ |
+ +--------------------------------------------------------- H001
+ /------22
+ | | /-------- H003
+ | +-----------------------------------------------21
+ | | \-------- H005
+-------23 |
+ | \--------------------------------------------------------- H000
+ |
+ \----------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_20 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_20 --> node_19 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_19 --> node_18 9 1 0.500 2 ==> 1
+ 10 1 1.000 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_18 --> node_17 11 1 0.500 2 ==> 1
+ node_17 --> node_16 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_16 --> node_15 11 1 0.500 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_16 --> H012 13 1 0.333 1 --> 0
+ node_17 --> H008 9 1 0.500 1 ==> 2
+ node_18 --> H009 12 1 0.333 2 ==> 1
+ node_22 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 8:
+
+Branch lengths and linkages for tree #8
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 25 root 0 0 0
+ 24 25 0 0 0
+ 22 24 2 2 3
+ 21 22 3 3 4
+ 20 21 1 1 3
+ 18 20 1 0 1
+H002 (1) 18 0 0 0
+ 17 18 0 0 1
+ 16 17 2 2 3
+H007 (3) 16 1 0 2
+ 15 16 0 0 1
+H012 (11) 15 1 1 2
+H011 (14) 15 1 0 1
+H009 (12) 17 2 0 2
+ 19 20 2 1 2
+H008 (4) 19 0 0 1
+H006 (13) 19 1 0 1
+H014 (5) 21 0 0 0
+H013 (6) 22 0 0 0
+H001 (7) 24 2 2 2
+ 23 24 1 1 1
+H003 (8) 23 1 1 1
+H005 (10) 23 1 1 1
+H000 (9) 24 0 0 1
+H010 (2) 25 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7727
+Rescaled consistency index (RC) = 0.4368
+
+ /----------------------------- H002
+ |
+ | /--------------- H007
+ /-----18 |
+ | | /-----16 /------- H012
+ | | | \------15
+ | \-----17 \------- H011
+ /------20 |
+ | | \---------------------- H009
+ | |
+ | | /------- H008
+ /-----21 \---------------------------19
+ | | \------- H006
+ | |
+ /-----22 \-------------------------------------------- H014
+ | |
+ | \--------------------------------------------------- H013
+ |
+ +---------------------------------------------------------- H001
+ /------24
+ | | /------- H003
+ | +-------------------------------------------------23
+ | | \------- H005
+------25 |
+ | \---------------------------------------------------------- H000
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_24 --> node_22 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_22 --> node_21 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_21 --> node_20 10 1 1.000 2 ==> 1
+ node_20 --> node_18 9 1 0.500 2 --> 1
+ node_17 --> node_16 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 --> 1
+ node_15 --> H012 11 1 0.500 2 ==> 1
+ node_15 --> H011 13 1 0.333 0 --> 1
+ node_17 --> H009 12 1 0.333 2 --> 1
+ 13 1 0.333 0 --> 1
+ node_20 --> node_19 11 1 0.500 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_19 --> H006 9 1 0.500 2 --> 1
+ node_24 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_24 --> node_23 3 1 1.000 2 ==> 1
+ node_23 --> H003 4 1 1.000 2 ==> 1
+ node_23 --> H005 12 1 0.333 2 ==> 1
+ node_25 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 9:
+
+Branch lengths and linkages for tree #9
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 24 root 0 0 0
+ 23 24 0 0 0
+ 21 23 2 2 2
+ 20 21 1 1 1
+ 19 20 2 2 2
+ 18 19 0 0 1
+ 17 18 3 3 3
+ 16 17 0 0 1
+H002 (1) 16 0 0 0
+ 15 16 1 1 1
+H008 (4) 15 1 1 1
+H006 (13) 15 0 0 0
+H009 (12) 17 1 0 1
+H007 (3) 18 1 0 1
+H012 (11) 19 1 1 1
+H011 (14) 19 1 1 1
+H014 (5) 20 2 2 2
+H013 (6) 21 0 0 0
+H001 (7) 23 2 2 2
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (10) 22 1 1 1
+H000 (9) 23 0 0 0
+H010 (2) 24 1 1 1
+-------------------------------------------------------------------------
+Sum 22
+
+Tree length = 22
+Consistency index (CI) = 0.5909
+Homoplasy index (HI) = 0.4091
+CI excluding uninformative characters = 0.5500
+HI excluding uninformative characters = 0.4500
+Retention index (RI) = 0.7955
+Rescaled consistency index (RC) = 0.4700
+
+ /--------------- H002
+ |
+ /-----16 /------- H008
+ | \------15
+ /-----17 \------- H006
+ | |
+ /-----18 \---------------------- H009
+ | |
+ | \----------------------------- H007
+ /------19
+ | +------------------------------------ H012
+ | |
+ /-----20 \------------------------------------ H011
+ | |
+ /-----21 \-------------------------------------------- H014
+ | |
+ | \--------------------------------------------------- H013
+ |
+ +---------------------------------------------------------- H001
+ /------23
+ | | /------- H003
+ | +-------------------------------------------------22
+ | | \------- H005
+------24 |
+ | \---------------------------------------------------------- H000
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_21 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_21 --> node_20 8 1 1.000 2 ==> 1
+ node_20 --> node_19 9 1 0.500 2 ==> 1
+ 10 1 1.000 2 ==> 1
+ node_18 --> node_17 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ 13 1 0.500 0 ==> 1
+ node_16 --> node_15 11 1 0.500 2 ==> 1
+ node_15 --> H008 9 1 0.500 1 ==> 2
+ node_17 --> H009 12 1 0.333 2 --> 1
+ node_18 --> H007 12 1 0.333 2 --> 1
+ node_19 --> H012 11 1 0.500 2 ==> 1
+ node_19 --> H011 13 1 0.500 0 ==> 1
+ node_20 --> H014 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_23 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+ node_24 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 10:
+
+Branch lengths and linkages for tree #10
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 22 root 0 0 0
+ 21 22 0 0 0
+ 19 21 2 2 2
+ 18 19 1 1 1
+ 17 18 2 2 2
+ 16 17 3 3 3
+H002 (1) 16 0 0 0
+ 15 16 1 1 1
+H008 (4) 15 1 1 1
+H006 (13) 15 0 0 0
+H009 (12) 16 1 1 1
+H007 (3) 17 1 1 1
+H012 (11) 17 1 1 1
+H011 (14) 17 1 1 1
+H014 (5) 18 2 2 2
+H013 (6) 19 0 0 0
+H001 (7) 21 2 2 2
+ 20 21 1 1 1
+H003 (8) 20 1 1 1
+H005 (10) 20 1 1 1
+H000 (9) 21 0 0 0
+H010 (2) 22 1 1 1
+-------------------------------------------------------------------------
+Sum 22
+
+Tree length = 22
+Consistency index (CI) = 0.5909
+Homoplasy index (HI) = 0.4091
+CI excluding uninformative characters = 0.5500
+HI excluding uninformative characters = 0.4500
+Retention index (RI) = 0.7955
+Rescaled consistency index (RC) = 0.4700
+
+ /------------------ H002
+ |
+ | /--------- H008
+ /-------16-------15
+ | | \--------- H006
+ | |
+ | \------------------ H009
+ |
+ /--------17--------------------------- H007
+ | |
+ | +--------------------------- H012
+ /-------18 |
+ | | \--------------------------- H011
+ | |
+ /-------19 \------------------------------------- H014
+ | |
+ | \---------------------------------------------- H013
+ |
+ +------------------------------------------------------- H001
+ /-------21
+ | | /--------- H003
+ | +--------------------------------------------20
+ | | \--------- H005
+--------22 |
+ | \------------------------------------------------------- H000
+ |
+ \---------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_19 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_19 --> node_18 8 1 1.000 2 ==> 1
+ node_18 --> node_17 9 1 0.500 2 ==> 1
+ 10 1 1.000 2 ==> 1
+ node_17 --> node_16 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ 13 1 0.500 0 ==> 1
+ node_16 --> node_15 11 1 0.500 2 ==> 1
+ node_15 --> H008 9 1 0.500 1 ==> 2
+ node_16 --> H009 12 1 0.333 2 ==> 1
+ node_17 --> H007 12 1 0.333 2 ==> 1
+ node_17 --> H012 11 1 0.500 2 ==> 1
+ node_17 --> H011 13 1 0.500 0 ==> 1
+ node_18 --> H014 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_21 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_21 --> node_20 3 1 1.000 2 ==> 1
+ node_20 --> H003 4 1 1.000 2 ==> 1
+ node_20 --> H005 12 1 0.333 2 ==> 1
+ node_22 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 11:
+
+Branch lengths and linkages for tree #11
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 25 root 0 0 0
+ 24 25 0 0 0
+ 22 24 2 2 3
+ 21 22 3 3 4
+ 20 21 2 1 3
+ 19 20 1 1 1
+ 18 19 0 0 1
+H002 (1) 18 0 0 0
+ 17 18 0 0 1
+ 16 17 2 2 3
+H007 (3) 16 2 0 2
+ 15 16 0 0 1
+H012 (11) 15 2 1 2
+H011 (14) 15 0 0 1
+H009 (12) 17 1 0 1
+H006 (13) 19 1 0 1
+H008 (4) 20 1 0 1
+H014 (5) 21 0 0 0
+H013 (6) 22 0 0 0
+H001 (7) 24 2 2 2
+ 23 24 1 1 1
+H003 (8) 23 1 1 1
+H005 (10) 23 1 1 1
+H000 (9) 24 0 0 1
+H010 (2) 25 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7727
+Rescaled consistency index (RC) = 0.4368
+
+ /--------------------------- H002
+ |
+ | /------------- H007
+ /----18 |
+ | | /-----16 /------- H012
+ | | | \----15
+ | \-----17 \------- H011
+ /-----19 |
+ | | \-------------------- H009
+ | |
+ /----20 \--------------------------------- H006
+ | |
+ /-----21 \---------------------------------------- H008
+ | |
+ /-----22 \---------------------------------------------- H014
+ | |
+ | \----------------------------------------------------- H013
+ |
+ +------------------------------------------------------------ H001
+ /----24
+ | | /------- H003
+ | +---------------------------------------------------23
+ | | \------- H005
+------25 |
+ | \------------------------------------------------------------ H000
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_24 --> node_22 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_22 --> node_21 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_21 --> node_20 10 1 1.000 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_20 --> node_19 9 1 1.000 2 ==> 1
+ node_17 --> node_16 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 --> 1
+ 13 1 0.333 1 --> 0
+ node_15 --> H012 11 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_17 --> H009 12 1 0.333 2 --> 1
+ node_19 --> H006 11 1 0.333 2 --> 1
+ node_20 --> H008 11 1 0.333 2 --> 1
+ node_24 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_24 --> node_23 3 1 1.000 2 ==> 1
+ node_23 --> H003 4 1 1.000 2 ==> 1
+ node_23 --> H005 12 1 0.333 2 ==> 1
+ node_25 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 12:
+
+Branch lengths and linkages for tree #12
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 21 root 0 0 0
+ 20 21 0 0 0
+ 18 20 2 2 2
+ 17 18 3 3 3
+ 16 17 3 3 3
+H002 (1) 16 0 0 0
+ 15 16 1 1 1
+H008 (4) 15 1 1 1
+H006 (13) 15 0 0 0
+H014 (5) 16 2 2 2
+H009 (12) 16 1 1 1
+H007 (3) 17 1 1 1
+H012 (11) 17 1 1 1
+H011 (14) 17 1 1 1
+H013 (6) 18 0 0 0
+H001 (7) 20 2 2 2
+ 19 20 1 1 1
+H003 (8) 19 1 1 1
+H005 (10) 19 1 1 1
+H000 (9) 20 0 0 0
+H010 (2) 21 1 1 1
+-------------------------------------------------------------------------
+Sum 22
+
+Tree length = 22
+Consistency index (CI) = 0.5909
+Homoplasy index (HI) = 0.4091
+CI excluding uninformative characters = 0.5500
+HI excluding uninformative characters = 0.4500
+Retention index (RI) = 0.7955
+Rescaled consistency index (RC) = 0.4700
+
+ /--------------------- H002
+ |
+ | /---------- H008
+ +---------15
+ /--------16 \---------- H006
+ | |
+ | +--------------------- H014
+ | |
+ | \--------------------- H009
+ /---------17
+ | +------------------------------- H007
+ | |
+ | +------------------------------- H012
+ /--------18 |
+ | | \------------------------------- H011
+ | |
+ | \------------------------------------------ H013
+ |
+ +---------------------------------------------------- H001
+ /---------20
+ | | /---------- H003
+ | +----------------------------------------19
+ | | \---------- H005
+---------21 |
+ | \---------------------------------------------------- H000
+ |
+ \--------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_20 --> node_18 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_18 --> node_17 8 1 1.000 2 ==> 1
+ 9 1 0.333 2 ==> 1
+ 10 1 0.500 2 ==> 1
+ node_17 --> node_16 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ 13 1 0.500 0 ==> 1
+ node_16 --> node_15 11 1 0.500 2 ==> 1
+ node_15 --> H008 9 1 0.333 1 ==> 2
+ node_16 --> H014 9 1 0.333 1 ==> 2
+ 10 1 0.500 1 ==> 2
+ node_16 --> H009 12 1 0.333 2 ==> 1
+ node_17 --> H007 12 1 0.333 2 ==> 1
+ node_17 --> H012 11 1 0.500 2 ==> 1
+ node_17 --> H011 13 1 0.500 0 ==> 1
+ node_20 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_20 --> node_19 3 1 1.000 2 ==> 1
+ node_19 --> H003 4 1 1.000 2 ==> 1
+ node_19 --> H005 12 1 0.333 2 ==> 1
+ node_21 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 13:
+
+Branch lengths and linkages for tree #13
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 22 root 0 0 0
+ 21 22 0 0 0
+ 19 21 2 2 3
+ 18 19 3 3 4
+ 17 18 2 2 3
+H002 (1) 17 0 0 0
+ 15 17 2 2 3
+H007 (3) 15 1 1 2
+H012 (11) 15 1 1 2
+H011 (14) 15 1 0 1
+ 16 17 2 1 2
+H008 (4) 16 1 1 1
+H006 (13) 16 0 0 0
+H009 (12) 17 2 1 2
+H014 (5) 18 0 0 0
+H001 (7) 19 0 0 0
+H013 (6) 21 2 2 2
+ 20 21 1 1 1
+H003 (8) 20 1 1 1
+H005 (10) 20 1 1 1
+H000 (9) 21 0 0 1
+H010 (2) 22 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7727
+Rescaled consistency index (RC) = 0.4368
+
+ /--------------------- H002
+ |
+ | /---------- H007
+ | |
+ +---------15---------- H012
+ | |
+ /--------17 \---------- H011
+ | |
+ | | /---------- H008
+ | +---------16
+ /---------18 | \---------- H006
+ | | |
+ | | \--------------------- H009
+ /--------19 |
+ | | \------------------------------- H014
+ | |
+ | \------------------------------------------ H001
+ |
+ +---------------------------------------------------- H013
+ /---------21
+ | | /---------- H003
+ | +----------------------------------------20
+ | | \---------- H005
+---------22 |
+ | \---------------------------------------------------- H000
+ |
+ \--------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_19 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_19 --> node_18 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_18 --> node_17 9 1 0.500 2 ==> 1
+ 10 1 1.000 2 ==> 1
+ node_17 --> node_15 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ node_15 --> H012 11 1 0.500 2 ==> 1
+ node_15 --> H011 13 1 0.333 0 --> 1
+ node_17 --> node_16 11 1 0.500 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_16 --> H008 9 1 0.500 1 ==> 2
+ node_17 --> H009 12 1 0.333 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_21 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ node_21 --> node_20 3 1 1.000 2 ==> 1
+ node_20 --> H003 4 1 1.000 2 ==> 1
+ node_20 --> H005 12 1 0.333 2 ==> 1
+ node_22 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 14:
+
+Branch lengths and linkages for tree #14
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 22 23 0 0 0
+ 20 22 0 0 3
+ 19 20 2 2 3
+ 18 19 3 1 4
+ 17 18 2 2 3
+H002 (1) 17 0 0 0
+ 15 17 2 2 3
+H007 (3) 15 1 1 2
+H012 (11) 15 1 1 2
+H011 (14) 15 1 0 1
+ 16 17 2 1 2
+H008 (4) 16 1 1 1
+H006 (13) 16 0 0 0
+H009 (12) 17 2 1 2
+H014 (5) 18 0 0 0
+H001 (7) 19 0 0 2
+H013 (6) 20 2 0 2
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (10) 21 1 1 1
+H000 (9) 22 0 0 1
+H010 (2) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7727
+Rescaled consistency index (RC) = 0.4368
+
+ /------------------ H002
+ |
+ | /--------- H007
+ | |
+ +-------15--------- H012
+ | |
+ /-------17 \--------- H011
+ | |
+ | | /--------- H008
+ | +-------16
+ /--------18 | \--------- H006
+ | | |
+ | | \------------------ H009
+ /-------19 |
+ | | \--------------------------- H014
+ | |
+ /-------20 \------------------------------------- H001
+ | |
+ | \---------------------------------------------- H013
+ |
+ /-------22 /--------- H003
+ | +--------------------------------------------21
+ | | \--------- H005
+--------23 |
+ | \------------------------------------------------------- H000
+ |
+ \---------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_20 --> node_19 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_19 --> node_18 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_18 --> node_17 9 1 0.500 2 ==> 1
+ 10 1 1.000 2 ==> 1
+ node_17 --> node_15 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ node_15 --> H012 11 1 0.500 2 ==> 1
+ node_15 --> H011 13 1 0.333 0 --> 1
+ node_17 --> node_16 11 1 0.500 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_16 --> H008 9 1 0.500 1 ==> 2
+ node_17 --> H009 12 1 0.333 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_20 --> H013 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 15:
+
+Branch lengths and linkages for tree #15
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 22 23 0 0 0
+ 20 22 2 2 3
+ 19 20 3 3 4
+ 18 19 1 1 3
+ 16 18 1 0 1
+H002 (1) 16 0 0 0
+ 15 16 2 2 3
+H007 (3) 15 1 1 2
+H012 (11) 15 1 1 2
+H011 (14) 15 1 0 1
+H009 (12) 16 2 1 2
+ 17 18 2 1 2
+H008 (4) 17 0 0 1
+H006 (13) 17 1 0 1
+H014 (5) 19 0 0 0
+H013 (6) 20 0 0 0
+H001 (7) 22 2 2 2
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (10) 21 1 1 1
+H000 (9) 22 0 0 1
+H010 (2) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7727
+Rescaled consistency index (RC) = 0.4368
+
+ /------------------ H002
+ |
+ | /--------- H007
+ | |
+ /-------16-------15--------- H012
+ | | |
+ | | \--------- H011
+ | |
+ /--------18 \------------------ H009
+ | |
+ | | /--------- H008
+ /-------19 \----------------17
+ | | \--------- H006
+ | |
+ /-------20 \------------------------------------- H014
+ | |
+ | \---------------------------------------------- H013
+ |
+ +------------------------------------------------------- H001
+ /-------22
+ | | /--------- H003
+ | +--------------------------------------------21
+ | | \--------- H005
+--------23 |
+ | \------------------------------------------------------- H000
+ |
+ \---------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_20 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_20 --> node_19 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_19 --> node_18 10 1 1.000 2 ==> 1
+ node_18 --> node_16 9 1 0.500 2 --> 1
+ node_16 --> node_15 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ node_15 --> H012 11 1 0.500 2 ==> 1
+ node_15 --> H011 13 1 0.333 0 --> 1
+ node_16 --> H009 12 1 0.333 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_18 --> node_17 11 1 0.500 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_17 --> H006 9 1 0.500 2 --> 1
+ node_22 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 16:
+
+Branch lengths and linkages for tree #16
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 22 root 0 0 0
+ 21 22 0 0 0
+ 19 21 2 2 3
+ 18 19 3 3 4
+ 17 18 2 1 2
+ 16 17 1 1 1
+H002 (1) 16 0 0 0
+ 15 16 2 2 3
+H007 (3) 15 2 1 2
+H012 (11) 15 2 1 2
+H011 (14) 15 0 0 1
+H009 (12) 16 1 1 1
+H006 (13) 16 1 1 1
+H008 (4) 17 1 1 1
+H014 (5) 18 0 0 0
+H013 (6) 19 0 0 0
+H001 (7) 21 2 2 2
+ 20 21 1 1 1
+H003 (8) 20 1 1 1
+H005 (10) 20 1 1 1
+H000 (9) 21 0 0 1
+H010 (2) 22 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7727
+Rescaled consistency index (RC) = 0.4368
+
+ /------------------ H002
+ |
+ | /--------- H007
+ | |
+ +-------15--------- H012
+ /-------16 |
+ | | \--------- H011
+ | |
+ | +------------------ H009
+ /--------17 |
+ | | \------------------ H006
+ | |
+ /-------18 \--------------------------- H008
+ | |
+ /-------19 \------------------------------------- H014
+ | |
+ | \---------------------------------------------- H013
+ |
+ +------------------------------------------------------- H001
+ /-------21
+ | | /--------- H003
+ | +--------------------------------------------20
+ | | \--------- H005
+--------22 |
+ | \------------------------------------------------------- H000
+ |
+ \---------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_19 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_19 --> node_18 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_18 --> node_17 10 1 1.000 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_17 --> node_16 9 1 1.000 2 ==> 1
+ node_16 --> node_15 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_15 --> H012 11 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_16 --> H009 12 1 0.333 2 ==> 1
+ node_16 --> H006 11 1 0.333 2 ==> 1
+ node_17 --> H008 11 1 0.333 2 ==> 1
+ node_21 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_21 --> node_20 3 1 1.000 2 ==> 1
+ node_20 --> H003 4 1 1.000 2 ==> 1
+ node_20 --> H005 12 1 0.333 2 ==> 1
+ node_22 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 17:
+
+Branch lengths and linkages for tree #17
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 24 root 0 0 0
+ 23 24 0 0 0
+ 21 23 0 0 2
+ 20 21 2 2 2
+ 19 20 1 1 3
+ 18 19 2 2 2
+ 16 18 3 1 3
+H002 (1) 16 0 0 0
+ 15 16 1 1 1
+H008 (4) 15 1 1 1
+H006 (13) 15 0 0 0
+H009 (12) 16 1 1 1
+ 17 18 0 0 2
+H007 (3) 17 1 1 1
+H012 (11) 17 1 1 1
+H011 (14) 17 1 1 1
+H014 (5) 19 2 0 2
+H013 (6) 20 0 0 2
+H001 (7) 21 2 0 2
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (10) 22 1 1 1
+H000 (9) 23 0 0 0
+H010 (2) 24 1 1 1
+-------------------------------------------------------------------------
+Sum 22
+
+Tree length = 22
+Consistency index (CI) = 0.5909
+Homoplasy index (HI) = 0.4091
+CI excluding uninformative characters = 0.5500
+HI excluding uninformative characters = 0.4500
+Retention index (RI) = 0.7955
+Rescaled consistency index (RC) = 0.4700
+
+ /---------------- H002
+ |
+ | /-------- H008
+ /------16------15
+ | | \-------- H006
+ | |
+ | \---------------- H009
+ /------18
+ | | /-------- H007
+ | | |
+ | \--------------17-------- H012
+ /-------19 |
+ | | \-------- H011
+ | |
+ /------20 \-------------------------------- H014
+ | |
+ /------21 \----------------------------------------- H013
+ | |
+ | \------------------------------------------------- H001
+ |
+ /------23 /-------- H003
+ | +-----------------------------------------------22
+ | | \-------- H005
+-------24 |
+ | \--------------------------------------------------------- H000
+ |
+ \----------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_20 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_20 --> node_19 8 1 1.000 2 ==> 1
+ node_19 --> node_18 9 1 0.500 2 ==> 1
+ 10 1 1.000 2 ==> 1
+ node_18 --> node_16 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ 13 1 0.500 0 ==> 1
+ node_16 --> node_15 11 1 0.500 2 ==> 1
+ node_15 --> H008 9 1 0.500 1 ==> 2
+ node_16 --> H009 12 1 0.333 2 ==> 1
+ node_17 --> H007 12 1 0.333 2 ==> 1
+ node_17 --> H012 11 1 0.500 2 ==> 1
+ node_17 --> H011 13 1 0.500 0 ==> 1
+ node_19 --> H014 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ node_21 --> H001 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+ node_24 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 18:
+
+Branch lengths and linkages for tree #18
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 24 root 0 0 0
+ 23 24 0 0 0
+ 21 23 0 0 3
+ 20 21 2 2 3
+ 19 20 3 1 4
+ 18 19 1 1 3
+ 16 18 1 0 1
+H002 (1) 16 0 0 0
+ 15 16 2 2 3
+H007 (3) 15 1 1 2
+H012 (11) 15 1 1 2
+H011 (14) 15 1 0 1
+H009 (12) 16 2 1 2
+ 17 18 2 1 2
+H008 (4) 17 0 0 1
+H006 (13) 17 1 0 1
+H014 (5) 19 0 0 0
+H013 (6) 20 0 0 2
+H001 (7) 21 2 0 2
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (10) 22 1 1 1
+H000 (9) 23 0 0 1
+H010 (2) 24 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7727
+Rescaled consistency index (RC) = 0.4368
+
+ /---------------- H002
+ |
+ | /-------- H007
+ | |
+ /------16------15-------- H012
+ | | |
+ | | \-------- H011
+ | |
+ /------18 \---------------- H009
+ | |
+ | | /-------- H008
+ /-------19 \--------------17
+ | | \-------- H006
+ | |
+ /------20 \-------------------------------- H014
+ | |
+ /------21 \----------------------------------------- H013
+ | |
+ | \------------------------------------------------- H001
+ |
+ /------23 /-------- H003
+ | +-----------------------------------------------22
+ | | \-------- H005
+-------24 |
+ | \--------------------------------------------------------- H000
+ |
+ \----------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_20 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_20 --> node_19 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_19 --> node_18 10 1 1.000 2 ==> 1
+ node_18 --> node_16 9 1 0.500 2 --> 1
+ node_16 --> node_15 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ node_15 --> H012 11 1 0.500 2 ==> 1
+ node_15 --> H011 13 1 0.333 0 --> 1
+ node_16 --> H009 12 1 0.333 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_18 --> node_17 11 1 0.500 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_17 --> H006 9 1 0.500 2 --> 1
+ node_21 --> H001 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+ node_24 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 19:
+
+Branch lengths and linkages for tree #19
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 24 root 0 0 0
+ 23 24 0 0 0
+ 21 23 0 0 3
+ 20 21 2 2 3
+ 19 20 3 1 4
+ 18 19 2 1 3
+ 17 18 1 1 1
+ 16 17 0 0 1
+H002 (1) 16 0 0 0
+ 15 16 2 2 3
+H007 (3) 15 2 1 2
+H012 (11) 15 2 1 2
+H011 (14) 15 0 0 1
+H009 (12) 16 1 1 1
+H006 (13) 17 1 0 1
+H008 (4) 18 1 0 1
+H014 (5) 19 0 0 0
+H013 (6) 20 0 0 2
+H001 (7) 21 2 0 2
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (10) 22 1 1 1
+H000 (9) 23 0 0 1
+H010 (2) 24 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7727
+Rescaled consistency index (RC) = 0.4368
+
+ /--------------- H002
+ |
+ | /------- H007
+ | |
+ /-----16------15------- H012
+ | | |
+ | | \------- H011
+ /-----17 |
+ | | \--------------- H009
+ | |
+ /-----18 \---------------------- H006
+ | |
+ /------19 \----------------------------- H008
+ | |
+ /-----20 \------------------------------------ H014
+ | |
+ /-----21 \-------------------------------------------- H013
+ | |
+ | \--------------------------------------------------- H001
+ |
+ /------23 /------- H003
+ | +-------------------------------------------------22
+ | | \------- H005
+------24 |
+ | \---------------------------------------------------------- H000
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_20 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_20 --> node_19 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_19 --> node_18 10 1 1.000 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_18 --> node_17 9 1 1.000 2 ==> 1
+ node_16 --> node_15 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_15 --> H012 11 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_16 --> H009 12 1 0.333 2 ==> 1
+ node_17 --> H006 11 1 0.333 2 --> 1
+ node_18 --> H008 11 1 0.333 2 --> 1
+ node_21 --> H001 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+ node_24 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 20:
+
+Branch lengths and linkages for tree #20
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 25 root 0 0 0
+ 24 25 0 0 0
+ 22 24 0 0 3
+ 21 22 2 2 3
+ 20 21 3 1 4
+ 19 20 2 2 3
+H002 (1) 19 0 0 0
+ 18 19 0 0 1
+ 16 18 2 2 3
+ 15 16 0 0 1
+H007 (3) 15 1 1 2
+H011 (14) 15 1 0 1
+H012 (11) 16 1 0 2
+ 17 18 2 0 2
+H008 (4) 17 1 1 1
+H006 (13) 17 0 0 0
+H009 (12) 19 2 1 2
+H014 (5) 20 0 0 0
+H013 (6) 21 0 0 2
+H001 (7) 22 2 0 2
+ 23 24 1 1 1
+H003 (8) 23 1 1 1
+H005 (10) 23 1 1 1
+H000 (9) 24 0 0 1
+H010 (2) 25 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7727
+Rescaled consistency index (RC) = 0.4368
+
+ /----------------------------- H002
+ |
+ | /------- H007
+ | /------15
+ | | \------- H011
+ | /-----16
+ /-----19 | \--------------- H012
+ | +-----18
+ | | | /------- H008
+ | | \-------------17
+ /------20 | \------- H006
+ | | |
+ | | \----------------------------- H009
+ /-----21 |
+ | | \------------------------------------ H014
+ | |
+ /-----22 \-------------------------------------------- H013
+ | |
+ | \--------------------------------------------------- H001
+ |
+ /------24 /------- H003
+ | +-------------------------------------------------23
+ | | \------- H005
+------25 |
+ | \---------------------------------------------------------- H000
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_21 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_21 --> node_20 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_20 --> node_19 9 1 0.500 2 ==> 1
+ 10 1 1.000 2 ==> 1
+ node_18 --> node_16 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ node_15 --> H011 13 1 0.333 0 --> 1
+ node_16 --> H012 11 1 0.500 2 --> 1
+ node_18 --> node_17 11 1 0.500 2 --> 1
+ 13 1 0.333 0 --> 1
+ node_17 --> H008 9 1 0.500 1 ==> 2
+ node_19 --> H009 12 1 0.333 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_22 --> H001 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ node_24 --> node_23 3 1 1.000 2 ==> 1
+ node_23 --> H003 4 1 1.000 2 ==> 1
+ node_23 --> H005 12 1 0.333 2 ==> 1
+ node_25 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 21:
+
+Branch lengths and linkages for tree #21
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 24 root 0 0 0
+ 23 24 0 0 0
+ 21 23 0 0 3
+ 20 21 2 2 3
+ 19 20 3 1 4
+ 18 19 3 2 3
+H002 (1) 18 0 0 0
+ 17 18 1 1 1
+ 16 17 2 2 3
+ 15 16 1 1 1
+H007 (3) 15 2 1 2
+H011 (14) 15 0 0 1
+H012 (11) 16 1 0 1
+H008 (4) 17 1 1 1
+H006 (13) 17 0 0 0
+H009 (12) 18 1 1 1
+H014 (5) 19 0 0 0
+H013 (6) 20 0 0 2
+H001 (7) 21 2 0 2
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (10) 22 1 1 1
+H000 (9) 23 0 0 1
+H010 (2) 24 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7727
+Rescaled consistency index (RC) = 0.4368
+
+ /----------------------------- H002
+ |
+ | /------- H007
+ | /------15
+ | | \------- H011
+ | /-----16
+ /-----18 | \--------------- H012
+ | | |
+ | +-----17---------------------- H008
+ | | |
+ /------19 | \---------------------- H006
+ | | |
+ | | \----------------------------- H009
+ /-----20 |
+ | | \------------------------------------ H014
+ | |
+ /-----21 \-------------------------------------------- H013
+ | |
+ | \--------------------------------------------------- H001
+ |
+ /------23 /------- H003
+ | +-------------------------------------------------22
+ | | \------- H005
+------24 |
+ | \---------------------------------------------------------- H000
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_20 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_20 --> node_19 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_19 --> node_18 9 1 0.500 2 ==> 1
+ 10 1 1.000 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_18 --> node_17 11 1 0.500 2 ==> 1
+ node_17 --> node_16 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_16 --> node_15 11 1 0.500 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_16 --> H012 13 1 0.333 1 --> 0
+ node_17 --> H008 9 1 0.500 1 ==> 2
+ node_18 --> H009 12 1 0.333 2 ==> 1
+ node_21 --> H001 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+ node_24 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 22:
+
+Branch lengths and linkages for tree #22
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 25 root 0 0 0
+ 24 25 0 0 0
+ 22 24 0 0 3
+ 21 22 2 2 3
+ 20 21 3 1 4
+ 19 20 2 2 3
+H002 (1) 19 0 0 0
+ 17 19 0 0 1
+ 16 17 2 2 3
+H007 (3) 16 1 0 2
+ 15 16 0 0 1
+H012 (11) 15 1 1 2
+H011 (14) 15 1 0 1
+H009 (12) 17 2 0 2
+ 18 19 2 1 2
+H008 (4) 18 1 1 1
+H006 (13) 18 0 0 0
+H014 (5) 20 0 0 0
+H013 (6) 21 0 0 2
+H001 (7) 22 2 0 2
+ 23 24 1 1 1
+H003 (8) 23 1 1 1
+H005 (10) 23 1 1 1
+H000 (9) 24 0 0 1
+H010 (2) 25 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7727
+Rescaled consistency index (RC) = 0.4368
+
+ /----------------------------- H002
+ |
+ | /--------------- H007
+ | |
+ | /-----16 /------- H012
+ | | \------15
+ /-----19-----17 \------- H011
+ | | |
+ | | \---------------------- H009
+ | |
+ /------20 | /------- H008
+ | | \--------------------18
+ | | \------- H006
+ /-----21 |
+ | | \------------------------------------ H014
+ | |
+ /-----22 \-------------------------------------------- H013
+ | |
+ | \--------------------------------------------------- H001
+ |
+ /------24 /------- H003
+ | +-------------------------------------------------23
+ | | \------- H005
+------25 |
+ | \---------------------------------------------------------- H000
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_21 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_21 --> node_20 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_20 --> node_19 9 1 0.500 2 ==> 1
+ 10 1 1.000 2 ==> 1
+ node_17 --> node_16 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 --> 1
+ node_15 --> H012 11 1 0.500 2 ==> 1
+ node_15 --> H011 13 1 0.333 0 --> 1
+ node_17 --> H009 12 1 0.333 2 --> 1
+ 13 1 0.333 0 --> 1
+ node_19 --> node_18 11 1 0.500 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_18 --> H008 9 1 0.500 1 ==> 2
+ node_22 --> H001 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ node_24 --> node_23 3 1 1.000 2 ==> 1
+ node_23 --> H003 4 1 1.000 2 ==> 1
+ node_23 --> H005 12 1 0.333 2 ==> 1
+ node_25 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 23:
+
+Branch lengths and linkages for tree #23
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 24 root 0 0 0
+ 23 24 0 0 0
+ 21 23 2 2 2
+ 20 21 1 1 1
+ 19 20 2 2 2
+ 18 19 0 0 1
+ 17 18 3 3 3
+ 15 17 0 0 1
+H002 (1) 15 0 0 0
+H009 (12) 15 1 1 1
+ 16 17 1 0 1
+H008 (4) 16 1 1 1
+H006 (13) 16 0 0 0
+H012 (11) 18 1 0 1
+H007 (3) 19 1 1 1
+H011 (14) 19 1 1 1
+H014 (5) 20 2 2 2
+H013 (6) 21 0 0 0
+H001 (7) 23 2 2 2
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (10) 22 1 1 1
+H000 (9) 23 0 0 0
+H010 (2) 24 1 1 1
+-------------------------------------------------------------------------
+Sum 22
+
+Tree length = 22
+Consistency index (CI) = 0.5909
+Homoplasy index (HI) = 0.4091
+CI excluding uninformative characters = 0.5500
+HI excluding uninformative characters = 0.4500
+Retention index (RI) = 0.7955
+Rescaled consistency index (RC) = 0.4700
+
+ /-------- H002
+ /------15
+ | \-------- H009
+ /------17
+ | | /-------- H008
+ | \------16
+ /------18 \-------- H006
+ | |
+ | \------------------------ H012
+ /-------19
+ | +-------------------------------- H007
+ | |
+ /------20 \-------------------------------- H011
+ | |
+ /------21 \----------------------------------------- H014
+ | |
+ | \------------------------------------------------- H013
+ |
+ +--------------------------------------------------------- H001
+ /------23
+ | | /-------- H003
+ | +-----------------------------------------------22
+ | | \-------- H005
+-------24 |
+ | \--------------------------------------------------------- H000
+ |
+ \----------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_21 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_21 --> node_20 8 1 1.000 2 ==> 1
+ node_20 --> node_19 9 1 0.500 2 ==> 1
+ 10 1 1.000 2 ==> 1
+ node_18 --> node_17 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ 13 1 0.500 0 ==> 1
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_17 --> node_16 11 1 0.500 2 --> 1
+ node_16 --> H008 9 1 0.500 1 ==> 2
+ node_18 --> H012 11 1 0.500 2 --> 1
+ node_19 --> H007 12 1 0.333 2 ==> 1
+ node_19 --> H011 13 1 0.500 0 ==> 1
+ node_20 --> H014 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_23 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+ node_24 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 24:
+
+Branch lengths and linkages for tree #24
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 24 root 0 0 0
+ 23 24 0 0 0
+ 21 23 2 2 2
+ 20 21 1 1 3
+ 18 20 2 2 3
+ 17 18 2 0 3
+ 15 17 1 0 1
+H002 (1) 15 0 0 0
+H009 (12) 15 1 1 1
+ 16 17 1 1 1
+H008 (4) 16 0 0 1
+H006 (13) 16 1 0 1
+H014 (5) 18 0 0 2
+ 19 20 2 0 2
+H007 (3) 19 1 1 1
+H012 (11) 19 1 1 1
+H011 (14) 19 1 1 1
+H013 (6) 21 0 0 0
+H001 (7) 23 2 2 2
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (10) 22 1 1 1
+H000 (9) 23 0 0 0
+H010 (2) 24 1 1 1
+-------------------------------------------------------------------------
+Sum 22
+
+Tree length = 22
+Consistency index (CI) = 0.5909
+Homoplasy index (HI) = 0.4091
+CI excluding uninformative characters = 0.5500
+HI excluding uninformative characters = 0.4500
+Retention index (RI) = 0.7955
+Rescaled consistency index (RC) = 0.4700
+
+ /--------- H002
+ /-------15
+ | \--------- H009
+ /-------17
+ | | /--------- H008
+ | \-------16
+ /--------18 \--------- H006
+ | |
+ | \--------------------------- H014
+ /-------20
+ | | /--------- H007
+ | | |
+ | \--------------------------19--------- H012
+ /-------21 |
+ | | \--------- H011
+ | |
+ | \---------------------------------------------- H013
+ |
+ +------------------------------------------------------- H001
+ /-------23
+ | | /--------- H003
+ | +--------------------------------------------22
+ | | \--------- H005
+--------24 |
+ | \------------------------------------------------------- H000
+ |
+ \---------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_21 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_21 --> node_20 8 1 1.000 2 ==> 1
+ node_20 --> node_18 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_18 --> node_17 10 1 0.500 2 --> 1
+ 13 1 0.500 0 --> 1
+ node_17 --> node_15 9 1 0.333 2 --> 1
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_17 --> node_16 11 1 0.500 2 ==> 1
+ node_16 --> H006 9 1 0.333 2 --> 1
+ node_20 --> node_19 9 1 0.333 2 --> 1
+ 10 1 0.500 2 --> 1
+ node_19 --> H007 12 1 0.333 2 ==> 1
+ node_19 --> H012 11 1 0.500 2 ==> 1
+ node_19 --> H011 13 1 0.500 0 ==> 1
+ node_23 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+ node_24 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 25:
+
+Branch lengths and linkages for tree #25
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 22 23 0 0 0
+ 20 22 2 2 2
+ 19 20 1 1 1
+ 18 19 2 2 2
+ 17 18 1 1 1
+ 16 17 3 3 3
+ 15 16 1 1 1
+H002 (1) 15 0 0 0
+H009 (12) 15 1 1 1
+H008 (4) 16 1 1 1
+H006 (13) 16 0 0 0
+H012 (11) 17 0 0 0
+H007 (3) 18 1 1 1
+H011 (14) 18 1 1 1
+H014 (5) 19 2 2 2
+H013 (6) 20 0 0 0
+H001 (7) 22 2 2 2
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (10) 21 1 1 1
+H000 (9) 22 0 0 0
+H010 (2) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 22
+
+Tree length = 22
+Consistency index (CI) = 0.5909
+Homoplasy index (HI) = 0.4091
+CI excluding uninformative characters = 0.5500
+HI excluding uninformative characters = 0.4500
+Retention index (RI) = 0.7955
+Rescaled consistency index (RC) = 0.4700
+
+ /-------- H002
+ /------15
+ | \-------- H009
+ |
+ /------16---------------- H008
+ | |
+ /------17 \---------------- H006
+ | |
+ | \------------------------ H012
+ /-------18
+ | +-------------------------------- H007
+ | |
+ /------19 \-------------------------------- H011
+ | |
+ /------20 \----------------------------------------- H014
+ | |
+ | \------------------------------------------------- H013
+ |
+ +--------------------------------------------------------- H001
+ /------22
+ | | /-------- H003
+ | +-----------------------------------------------21
+ | | \-------- H005
+-------23 |
+ | \--------------------------------------------------------- H000
+ |
+ \----------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_20 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_20 --> node_19 8 1 1.000 2 ==> 1
+ node_19 --> node_18 9 1 0.500 2 ==> 1
+ 10 1 1.000 2 ==> 1
+ node_18 --> node_17 11 1 0.500 2 ==> 1
+ node_17 --> node_16 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ 13 1 0.500 0 ==> 1
+ node_16 --> node_15 11 1 0.500 1 ==> 2
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_16 --> H008 9 1 0.500 1 ==> 2
+ node_18 --> H007 12 1 0.333 2 ==> 1
+ node_18 --> H011 13 1 0.500 0 ==> 1
+ node_19 --> H014 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_22 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 26:
+
+Branch lengths and linkages for tree #26
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 24 root 0 0 0
+ 23 24 0 0 0
+ 21 23 2 2 2
+ 20 21 1 1 2
+ 18 20 2 2 3
+ 17 18 2 0 3
+ 16 17 1 1 1
+ 15 16 0 0 1
+H002 (1) 15 0 0 0
+H009 (12) 15 1 1 1
+H006 (13) 16 1 0 1
+H008 (4) 17 1 0 1
+H014 (5) 18 0 0 1
+ 19 20 2 1 2
+H007 (3) 19 1 1 1
+H012 (11) 19 1 1 1
+H011 (14) 19 1 1 1
+H013 (6) 21 0 0 0
+H001 (7) 23 2 2 2
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (10) 22 1 1 1
+H000 (9) 23 0 0 0
+H010 (2) 24 1 1 1
+-------------------------------------------------------------------------
+Sum 22
+
+Tree length = 22
+Consistency index (CI) = 0.5909
+Homoplasy index (HI) = 0.4091
+CI excluding uninformative characters = 0.5500
+HI excluding uninformative characters = 0.4500
+Retention index (RI) = 0.7955
+Rescaled consistency index (RC) = 0.4700
+
+ /-------- H002
+ /------15
+ | \-------- H009
+ /------16
+ | \---------------- H006
+ /------17
+ | \------------------------ H008
+ /-------18
+ | \-------------------------------- H014
+ |
+ /------20 /-------- H007
+ | | |
+ | \-------------------------------19-------- H012
+ /------21 |
+ | | \-------- H011
+ | |
+ | \------------------------------------------------- H013
+ |
+ +--------------------------------------------------------- H001
+ /------23
+ | | /-------- H003
+ | +-----------------------------------------------22
+ | | \-------- H005
+-------24 |
+ | \--------------------------------------------------------- H000
+ |
+ \----------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_21 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_21 --> node_20 8 1 1.000 2 ==> 1
+ node_20 --> node_18 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_18 --> node_17 10 1 0.500 2 --> 1
+ 13 1 0.500 0 --> 1
+ node_17 --> node_16 9 1 0.500 2 ==> 1
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_16 --> H006 11 1 0.333 2 --> 1
+ node_17 --> H008 11 1 0.333 2 --> 1
+ node_20 --> node_19 9 1 0.500 2 ==> 1
+ 10 1 0.500 2 --> 1
+ node_19 --> H007 12 1 0.333 2 ==> 1
+ node_19 --> H012 11 1 0.333 2 ==> 1
+ node_19 --> H011 13 1 0.500 0 ==> 1
+ node_23 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+ node_24 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 27:
+
+Branch lengths and linkages for tree #27
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 22 root 0 0 0
+ 21 22 0 0 0
+ 19 21 2 2 2
+ 18 19 3 3 3
+ 17 18 3 3 3
+H002 (1) 17 0 0 0
+ 16 17 0 0 1
+ 15 16 1 1 1
+H008 (4) 15 1 0 1
+H006 (13) 15 0 0 1
+H014 (5) 16 2 1 2
+H009 (12) 17 1 1 1
+H007 (3) 18 1 1 1
+H012 (11) 18 1 1 1
+H011 (14) 18 1 1 1
+H013 (6) 19 0 0 0
+H001 (7) 21 2 2 2
+ 20 21 1 1 1
+H003 (8) 20 1 1 1
+H005 (10) 20 1 1 1
+H000 (9) 21 0 0 0
+H010 (2) 22 1 1 1
+-------------------------------------------------------------------------
+Sum 22
+
+Tree length = 22
+Consistency index (CI) = 0.5909
+Homoplasy index (HI) = 0.4091
+CI excluding uninformative characters = 0.5500
+HI excluding uninformative characters = 0.4500
+Retention index (RI) = 0.7955
+Rescaled consistency index (RC) = 0.4700
+
+ /--------------------------- H002
+ |
+ | /--------- H008
+ | /-------15
+ /--------17 | \--------- H006
+ | +-------16
+ | | \------------------ H014
+ | |
+ | \--------------------------- H009
+ /-------18
+ | +------------------------------------- H007
+ | |
+ | +------------------------------------- H012
+ /-------19 |
+ | | \------------------------------------- H011
+ | |
+ | \---------------------------------------------- H013
+ |
+ +------------------------------------------------------- H001
+ /-------21
+ | | /--------- H003
+ | +--------------------------------------------20
+ | | \--------- H005
+--------22 |
+ | \------------------------------------------------------- H000
+ |
+ \---------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_19 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_19 --> node_18 8 1 1.000 2 ==> 1
+ 9 1 0.333 2 ==> 1
+ 10 1 0.500 2 ==> 1
+ node_18 --> node_17 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ 13 1 0.500 0 ==> 1
+ node_16 --> node_15 11 1 0.500 2 ==> 1
+ node_15 --> H008 9 1 0.333 1 --> 2
+ node_16 --> H014 9 1 0.333 1 --> 2
+ 10 1 0.500 1 ==> 2
+ node_17 --> H009 12 1 0.333 2 ==> 1
+ node_18 --> H007 12 1 0.333 2 ==> 1
+ node_18 --> H012 11 1 0.500 2 ==> 1
+ node_18 --> H011 13 1 0.500 0 ==> 1
+ node_21 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_21 --> node_20 3 1 1.000 2 ==> 1
+ node_20 --> H003 4 1 1.000 2 ==> 1
+ node_20 --> H005 12 1 0.333 2 ==> 1
+ node_22 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 28:
+
+Branch lengths and linkages for tree #28
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 22 root 0 0 0
+ 21 22 0 0 0
+ 19 21 2 2 2
+ 18 19 3 3 3
+ 17 18 3 3 3
+H002 (1) 17 0 0 0
+ 16 17 0 0 1
+ 15 16 1 1 1
+H008 (4) 15 1 0 1
+H014 (5) 15 1 1 2
+H006 (13) 16 1 0 1
+H009 (12) 17 1 1 1
+H007 (3) 18 1 1 1
+H012 (11) 18 1 1 1
+H011 (14) 18 1 1 1
+H013 (6) 19 0 0 0
+H001 (7) 21 2 2 2
+ 20 21 1 1 1
+H003 (8) 20 1 1 1
+H005 (10) 20 1 1 1
+H000 (9) 21 0 0 0
+H010 (2) 22 1 1 1
+-------------------------------------------------------------------------
+Sum 22
+
+Tree length = 22
+Consistency index (CI) = 0.5909
+Homoplasy index (HI) = 0.4091
+CI excluding uninformative characters = 0.5500
+HI excluding uninformative characters = 0.4500
+Retention index (RI) = 0.7955
+Rescaled consistency index (RC) = 0.4700
+
+ /--------------------------- H002
+ |
+ | /--------- H008
+ | /-------15
+ /--------17 | \--------- H014
+ | +-------16
+ | | \------------------ H006
+ | |
+ | \--------------------------- H009
+ /-------18
+ | +------------------------------------- H007
+ | |
+ | +------------------------------------- H012
+ /-------19 |
+ | | \------------------------------------- H011
+ | |
+ | \---------------------------------------------- H013
+ |
+ +------------------------------------------------------- H001
+ /-------21
+ | | /--------- H003
+ | +--------------------------------------------20
+ | | \--------- H005
+--------22 |
+ | \------------------------------------------------------- H000
+ |
+ \---------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_19 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_19 --> node_18 8 1 1.000 2 ==> 1
+ 9 1 0.500 2 ==> 1
+ 10 1 0.500 2 ==> 1
+ node_18 --> node_17 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ 13 1 0.500 0 ==> 1
+ node_16 --> node_15 9 1 0.500 1 ==> 2
+ node_15 --> H008 11 1 0.333 2 --> 1
+ node_15 --> H014 10 1 0.500 1 ==> 2
+ node_16 --> H006 11 1 0.333 2 --> 1
+ node_17 --> H009 12 1 0.333 2 ==> 1
+ node_18 --> H007 12 1 0.333 2 ==> 1
+ node_18 --> H012 11 1 0.333 2 ==> 1
+ node_18 --> H011 13 1 0.500 0 ==> 1
+ node_21 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_21 --> node_20 3 1 1.000 2 ==> 1
+ node_20 --> H003 4 1 1.000 2 ==> 1
+ node_20 --> H005 12 1 0.333 2 ==> 1
+ node_22 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 29:
+
+Branch lengths and linkages for tree #29
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 22 23 0 0 0
+ 20 22 0 0 3
+ 19 20 2 2 3
+ 18 19 3 1 4
+ 17 18 2 1 2
+ 16 17 1 1 1
+H002 (1) 16 0 0 0
+ 15 16 2 2 3
+H007 (3) 15 2 1 2
+H012 (11) 15 2 1 2
+H011 (14) 15 0 0 1
+H009 (12) 16 1 1 1
+H006 (13) 16 1 1 1
+H008 (4) 17 1 1 1
+H014 (5) 18 0 0 0
+H013 (6) 19 0 0 2
+H001 (7) 20 2 0 2
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (10) 21 1 1 1
+H000 (9) 22 0 0 1
+H010 (2) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7727
+Rescaled consistency index (RC) = 0.4368
+
+ /---------------- H002
+ |
+ | /-------- H007
+ | |
+ +------15-------- H012
+ /------16 |
+ | | \-------- H011
+ | |
+ | +---------------- H009
+ /------17 |
+ | | \---------------- H006
+ | |
+ /-------18 \------------------------ H008
+ | |
+ /------19 \-------------------------------- H014
+ | |
+ /------20 \----------------------------------------- H013
+ | |
+ | \------------------------------------------------- H001
+ |
+ /------22 /-------- H003
+ | +-----------------------------------------------21
+ | | \-------- H005
+-------23 |
+ | \--------------------------------------------------------- H000
+ |
+ \----------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_20 --> node_19 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_19 --> node_18 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_18 --> node_17 10 1 1.000 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_17 --> node_16 9 1 1.000 2 ==> 1
+ node_16 --> node_15 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_15 --> H012 11 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_16 --> H009 12 1 0.333 2 ==> 1
+ node_16 --> H006 11 1 0.333 2 ==> 1
+ node_17 --> H008 11 1 0.333 2 ==> 1
+ node_20 --> H001 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 30:
+
+Branch lengths and linkages for tree #30
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 22 23 0 0 0
+ 20 22 2 2 2
+ 19 20 2 2 3
+ 17 19 3 3 3
+ 15 17 1 0 1
+H002 (1) 15 0 0 0
+H009 (12) 15 1 1 1
+ 16 17 1 1 1
+H008 (4) 16 0 0 1
+H006 (13) 16 1 0 1
+H014 (5) 17 1 1 2
+ 18 19 1 0 1
+H007 (3) 18 1 1 1
+H012 (11) 18 1 1 1
+H011 (14) 18 1 1 1
+H013 (6) 20 0 0 0
+H001 (7) 22 2 2 2
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (10) 21 1 1 1
+H000 (9) 22 0 0 0
+H010 (2) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 22
+
+Tree length = 22
+Consistency index (CI) = 0.5909
+Homoplasy index (HI) = 0.4091
+CI excluding uninformative characters = 0.5500
+HI excluding uninformative characters = 0.4500
+Retention index (RI) = 0.7955
+Rescaled consistency index (RC) = 0.4700
+
+ /---------- H002
+ /---------15
+ | \---------- H009
+ |
+ | /---------- H008
+ /--------17---------16
+ | | \---------- H006
+ | |
+ | \--------------------- H014
+ /---------19
+ | | /---------- H007
+ | | |
+ | \-------------------18---------- H012
+ /--------20 |
+ | | \---------- H011
+ | |
+ | \------------------------------------------ H013
+ |
+ +---------------------------------------------------- H001
+ /---------22
+ | | /---------- H003
+ | +----------------------------------------21
+ | | \---------- H005
+---------23 |
+ | \---------------------------------------------------- H000
+ |
+ \--------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_20 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_20 --> node_19 8 1 1.000 2 ==> 1
+ 10 1 0.500 2 ==> 1
+ node_19 --> node_17 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ 13 1 0.500 0 ==> 1
+ node_17 --> node_15 9 1 0.333 2 --> 1
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_17 --> node_16 11 1 0.500 2 ==> 1
+ node_16 --> H006 9 1 0.333 2 --> 1
+ node_17 --> H014 10 1 0.500 1 ==> 2
+ node_19 --> node_18 9 1 0.333 2 --> 1
+ node_18 --> H007 12 1 0.333 2 ==> 1
+ node_18 --> H012 11 1 0.500 2 ==> 1
+ node_18 --> H011 13 1 0.500 0 ==> 1
+ node_22 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 31:
+
+Branch lengths and linkages for tree #31
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 26 root 0 0 0
+ 25 26 0 0 0
+ 23 25 0 0 3
+ 22 23 2 2 3
+ 21 22 3 1 4
+ 20 21 1 1 3
+ 18 20 1 0 1
+H002 (1) 18 0 0 0
+ 17 18 0 0 1
+ 16 17 2 2 3
+H007 (3) 16 1 0 2
+ 15 16 0 0 1
+H012 (11) 15 1 1 2
+H011 (14) 15 1 0 1
+H009 (12) 17 2 0 2
+ 19 20 2 1 2
+H008 (4) 19 0 0 1
+H006 (13) 19 1 0 1
+H014 (5) 21 0 0 0
+H013 (6) 22 0 0 2
+H001 (7) 23 2 0 2
+ 24 25 1 1 1
+H003 (8) 24 1 1 1
+H005 (10) 24 1 1 1
+H000 (9) 25 0 0 1
+H010 (2) 26 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7727
+Rescaled consistency index (RC) = 0.4368
+
+ /--------------------------- H002
+ |
+ | /------------- H007
+ /----18 |
+ | | /-----16 /------- H012
+ | | | \----15
+ | \-----17 \------- H011
+ /-----20 |
+ | | \-------------------- H009
+ | |
+ | | /------- H008
+ /----21 \------------------------19
+ | | \------- H006
+ | |
+ /-----22 \---------------------------------------- H014
+ | |
+ /-----23 \---------------------------------------------- H013
+ | |
+ | \----------------------------------------------------- H001
+ |
+ /----25 /------- H003
+ | +---------------------------------------------------24
+ | | \------- H005
+------26 |
+ | \------------------------------------------------------------ H000
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_22 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_22 --> node_21 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_21 --> node_20 10 1 1.000 2 ==> 1
+ node_20 --> node_18 9 1 0.500 2 --> 1
+ node_17 --> node_16 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 --> 1
+ node_15 --> H012 11 1 0.500 2 ==> 1
+ node_15 --> H011 13 1 0.333 0 --> 1
+ node_17 --> H009 12 1 0.333 2 --> 1
+ 13 1 0.333 0 --> 1
+ node_20 --> node_19 11 1 0.500 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_19 --> H006 9 1 0.500 2 --> 1
+ node_23 --> H001 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ node_25 --> node_24 3 1 1.000 2 ==> 1
+ node_24 --> H003 4 1 1.000 2 ==> 1
+ node_24 --> H005 12 1 0.333 2 ==> 1
+ node_26 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 32:
+
+Branch lengths and linkages for tree #32
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 26 root 0 0 0
+ 25 26 0 0 0
+ 23 25 0 0 3
+ 22 23 2 2 3
+ 21 22 3 1 4
+ 20 21 2 1 3
+ 15 20 1 0 1
+H002 (1) 15 0 0 0
+H009 (12) 15 1 1 1
+ 19 20 1 1 1
+ 18 19 1 0 1
+ 17 18 2 2 3
+ 16 17 1 1 1
+H007 (3) 16 2 1 2
+H011 (14) 16 0 0 1
+H012 (11) 17 1 0 1
+H006 (13) 18 0 0 0
+H008 (4) 19 0 0 1
+H014 (5) 21 0 0 0
+H013 (6) 22 0 0 2
+H001 (7) 23 2 0 2
+ 24 25 1 1 1
+H003 (8) 24 1 1 1
+H005 (10) 24 1 1 1
+H000 (9) 25 0 0 1
+H010 (2) 26 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7727
+Rescaled consistency index (RC) = 0.4368
+
+ /------- H002
+ /------------------------15
+ | \------- H009
+ |
+ | /------- H007
+ | /----16
+ /-----20 | \------- H011
+ | | /-----17
+ | | | \------------- H012
+ | | /-----18
+ /----21 | | \-------------------- H006
+ | | \----19
+ | | \--------------------------- H008
+ /-----22 |
+ | | \---------------------------------------- H014
+ | |
+ /-----23 \---------------------------------------------- H013
+ | |
+ | \----------------------------------------------------- H001
+ |
+ /----25 /------- H003
+ | +---------------------------------------------------24
+ | | \------- H005
+------26 |
+ | \------------------------------------------------------------ H000
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_22 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_22 --> node_21 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_21 --> node_20 10 1 1.000 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_20 --> node_15 9 1 0.500 2 --> 1
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_20 --> node_19 11 1 0.500 2 ==> 1
+ node_19 --> node_18 9 1 0.500 2 --> 1
+ node_18 --> node_17 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_17 --> node_16 11 1 0.500 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_17 --> H012 13 1 0.333 1 --> 0
+ node_23 --> H001 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ node_25 --> node_24 3 1 1.000 2 ==> 1
+ node_24 --> H003 4 1 1.000 2 ==> 1
+ node_24 --> H005 12 1 0.333 2 ==> 1
+ node_26 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 33:
+
+Branch lengths and linkages for tree #33
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 24 root 0 0 0
+ 23 24 0 0 0
+ 21 23 2 2 3
+ 20 21 3 3 4
+ 19 20 2 1 2
+ 18 19 1 1 1
+H002 (1) 18 0 0 0
+ 17 18 0 0 1
+ 16 17 2 2 3
+H007 (3) 16 2 0 2
+ 15 16 0 0 1
+H012 (11) 15 2 1 2
+H011 (14) 15 0 0 1
+H009 (12) 17 1 0 1
+H006 (13) 18 1 1 1
+H008 (4) 19 1 1 1
+H014 (5) 20 0 0 0
+H013 (6) 21 0 0 0
+H001 (7) 23 2 2 2
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (10) 22 1 1 1
+H000 (9) 23 0 0 1
+H010 (2) 24 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7727
+Rescaled consistency index (RC) = 0.4368
+
+ /----------------------------- H002
+ |
+ | /--------------- H007
+ | |
+ | /-----16 /------- H012
+ /-----18 | \------15
+ | +-----17 \------- H011
+ | | |
+ | | \---------------------- H009
+ /------19 |
+ | | \----------------------------- H006
+ | |
+ /-----20 \------------------------------------ H008
+ | |
+ /-----21 \-------------------------------------------- H014
+ | |
+ | \--------------------------------------------------- H013
+ |
+ +---------------------------------------------------------- H001
+ /------23
+ | | /------- H003
+ | +-------------------------------------------------22
+ | | \------- H005
+------24 |
+ | \---------------------------------------------------------- H000
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_21 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_21 --> node_20 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_20 --> node_19 10 1 1.000 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_19 --> node_18 9 1 1.000 2 ==> 1
+ node_17 --> node_16 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 --> 1
+ 13 1 0.333 1 --> 0
+ node_15 --> H012 11 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_17 --> H009 12 1 0.333 2 --> 1
+ node_18 --> H006 11 1 0.333 2 ==> 1
+ node_19 --> H008 11 1 0.333 2 ==> 1
+ node_23 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+ node_24 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 34:
+
+Branch lengths and linkages for tree #34
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 24 root 0 0 0
+ 23 24 0 0 0
+ 21 23 2 2 3
+ 20 21 3 3 4
+ 19 20 2 2 3
+H002 (1) 19 0 0 0
+ 17 19 0 0 1
+ 16 17 2 2 3
+H007 (3) 16 1 0 2
+ 15 16 0 0 1
+H012 (11) 15 1 1 2
+H011 (14) 15 1 0 1
+H009 (12) 17 2 0 2
+ 18 19 2 1 2
+H008 (4) 18 1 1 1
+H006 (13) 18 0 0 0
+H014 (5) 20 0 0 0
+H001 (7) 21 0 0 0
+H013 (6) 23 2 2 2
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (10) 22 1 1 1
+H000 (9) 23 0 0 1
+H010 (2) 24 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7727
+Rescaled consistency index (RC) = 0.4368
+
+ /-------------------------------- H002
+ |
+ | /---------------- H007
+ | |
+ | /------16 /-------- H012
+ | | \------15
+ /-------19------17 \-------- H011
+ | | |
+ | | \------------------------ H009
+ | |
+ /------20 | /-------- H008
+ | | \----------------------18
+ | | \-------- H006
+ /------21 |
+ | | \----------------------------------------- H014
+ | |
+ | \------------------------------------------------- H001
+ |
+ +--------------------------------------------------------- H013
+ /------23
+ | | /-------- H003
+ | +-----------------------------------------------22
+ | | \-------- H005
+-------24 |
+ | \--------------------------------------------------------- H000
+ |
+ \----------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_21 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_21 --> node_20 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_20 --> node_19 9 1 0.500 2 ==> 1
+ 10 1 1.000 2 ==> 1
+ node_17 --> node_16 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 --> 1
+ node_15 --> H012 11 1 0.500 2 ==> 1
+ node_15 --> H011 13 1 0.333 0 --> 1
+ node_17 --> H009 12 1 0.333 2 --> 1
+ 13 1 0.333 0 --> 1
+ node_19 --> node_18 11 1 0.500 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_18 --> H008 9 1 0.500 1 ==> 2
+ node_23 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+ node_24 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 35:
+
+Branch lengths and linkages for tree #35
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 22 23 0 0 0
+ 20 22 2 2 2
+ 19 20 3 3 3
+ 18 19 0 0 1
+ 17 18 3 3 3
+ 16 17 0 0 1
+H002 (1) 16 0 0 0
+ 15 16 1 1 1
+H008 (4) 15 1 1 1
+H006 (13) 15 0 0 0
+H014 (5) 16 2 2 2
+H009 (12) 17 1 0 1
+H007 (3) 18 1 0 1
+H012 (11) 19 1 1 1
+H011 (14) 19 1 1 1
+H013 (6) 20 0 0 0
+H001 (7) 22 2 2 2
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (10) 21 1 1 1
+H000 (9) 22 0 0 0
+H010 (2) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 22
+
+Tree length = 22
+Consistency index (CI) = 0.5909
+Homoplasy index (HI) = 0.4091
+CI excluding uninformative characters = 0.5500
+HI excluding uninformative characters = 0.4500
+Retention index (RI) = 0.7955
+Rescaled consistency index (RC) = 0.4700
+
+ /---------------- H002
+ |
+ | /-------- H008
+ /------16------15
+ | | \-------- H006
+ | |
+ /------17 \---------------- H014
+ | |
+ /-------18 \------------------------ H009
+ | |
+ | \-------------------------------- H007
+ /------19
+ | +----------------------------------------- H012
+ | |
+ /------20 \----------------------------------------- H011
+ | |
+ | \------------------------------------------------- H013
+ |
+ +--------------------------------------------------------- H001
+ /------22
+ | | /-------- H003
+ | +-----------------------------------------------21
+ | | \-------- H005
+-------23 |
+ | \--------------------------------------------------------- H000
+ |
+ \----------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_20 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_20 --> node_19 8 1 1.000 2 ==> 1
+ 9 1 0.333 2 ==> 1
+ 10 1 0.500 2 ==> 1
+ node_18 --> node_17 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ 13 1 0.500 0 ==> 1
+ node_16 --> node_15 11 1 0.500 2 ==> 1
+ node_15 --> H008 9 1 0.333 1 ==> 2
+ node_16 --> H014 9 1 0.333 1 ==> 2
+ 10 1 0.500 1 ==> 2
+ node_17 --> H009 12 1 0.333 2 --> 1
+ node_18 --> H007 12 1 0.333 2 --> 1
+ node_19 --> H012 11 1 0.500 2 ==> 1
+ node_19 --> H011 13 1 0.500 0 ==> 1
+ node_22 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 36:
+
+Branch lengths and linkages for tree #36
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 25 root 0 0 0
+ 24 25 0 0 0
+ 22 24 0 0 3
+ 21 22 2 2 3
+ 20 21 3 1 4
+ 19 20 2 2 3
+H002 (1) 19 0 0 0
+ 17 19 0 0 1
+ 16 17 2 2 3
+H007 (3) 16 1 0 2
+ 15 16 0 0 1
+H012 (11) 15 1 1 2
+H011 (14) 15 1 0 1
+H009 (12) 17 2 0 2
+ 18 19 2 1 2
+H008 (4) 18 1 1 1
+H006 (13) 18 0 0 0
+H014 (5) 20 0 0 0
+H001 (7) 21 0 0 2
+H013 (6) 22 2 0 2
+ 23 24 1 1 1
+H003 (8) 23 1 1 1
+H005 (10) 23 1 1 1
+H000 (9) 24 0 0 1
+H010 (2) 25 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7727
+Rescaled consistency index (RC) = 0.4368
+
+ /----------------------------- H002
+ |
+ | /--------------- H007
+ | |
+ | /-----16 /------- H012
+ | | \------15
+ /-----19-----17 \------- H011
+ | | |
+ | | \---------------------- H009
+ | |
+ /------20 | /------- H008
+ | | \--------------------18
+ | | \------- H006
+ /-----21 |
+ | | \------------------------------------ H014
+ | |
+ /-----22 \-------------------------------------------- H001
+ | |
+ | \--------------------------------------------------- H013
+ |
+ /------24 /------- H003
+ | +-------------------------------------------------23
+ | | \------- H005
+------25 |
+ | \---------------------------------------------------------- H000
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_21 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_21 --> node_20 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_20 --> node_19 9 1 0.500 2 ==> 1
+ 10 1 1.000 2 ==> 1
+ node_17 --> node_16 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 --> 1
+ node_15 --> H012 11 1 0.500 2 ==> 1
+ node_15 --> H011 13 1 0.333 0 --> 1
+ node_17 --> H009 12 1 0.333 2 --> 1
+ 13 1 0.333 0 --> 1
+ node_19 --> node_18 11 1 0.500 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_18 --> H008 9 1 0.500 1 ==> 2
+ node_22 --> H013 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ node_24 --> node_23 3 1 1.000 2 ==> 1
+ node_23 --> H003 4 1 1.000 2 ==> 1
+ node_23 --> H005 12 1 0.333 2 ==> 1
+ node_25 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 37:
+
+Branch lengths and linkages for tree #37
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 22 23 0 0 0
+ 20 22 2 2 2
+ 19 20 3 3 3
+ 18 19 0 0 1
+ 17 18 3 3 3
+ 15 17 0 0 1
+H002 (1) 15 0 0 0
+H014 (5) 15 2 2 2
+H009 (12) 15 1 1 1
+ 16 17 1 0 1
+H008 (4) 16 1 1 1
+H006 (13) 16 0 0 0
+H012 (11) 18 1 0 1
+H007 (3) 19 1 1 1
+H011 (14) 19 1 1 1
+H013 (6) 20 0 0 0
+H001 (7) 22 2 2 2
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (10) 21 1 1 1
+H000 (9) 22 0 0 0
+H010 (2) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 22
+
+Tree length = 22
+Consistency index (CI) = 0.5909
+Homoplasy index (HI) = 0.4091
+CI excluding uninformative characters = 0.5500
+HI excluding uninformative characters = 0.4500
+Retention index (RI) = 0.7955
+Rescaled consistency index (RC) = 0.4700
+
+ /--------- H002
+ |
+ /-------15--------- H014
+ | |
+ | \--------- H009
+ /-------17
+ | | /--------- H008
+ | \-------16
+ /--------18 \--------- H006
+ | |
+ | \--------------------------- H012
+ /-------19
+ | +------------------------------------- H007
+ | |
+ /-------20 \------------------------------------- H011
+ | |
+ | \---------------------------------------------- H013
+ |
+ +------------------------------------------------------- H001
+ /-------22
+ | | /--------- H003
+ | +--------------------------------------------21
+ | | \--------- H005
+--------23 |
+ | \------------------------------------------------------- H000
+ |
+ \---------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_20 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_20 --> node_19 8 1 1.000 2 ==> 1
+ 9 1 0.333 2 ==> 1
+ 10 1 0.500 2 ==> 1
+ node_18 --> node_17 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ 13 1 0.500 0 ==> 1
+ node_15 --> H014 9 1 0.333 1 ==> 2
+ 10 1 0.500 1 ==> 2
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_17 --> node_16 11 1 0.500 2 --> 1
+ node_16 --> H008 9 1 0.333 1 ==> 2
+ node_18 --> H012 11 1 0.500 2 --> 1
+ node_19 --> H007 12 1 0.333 2 ==> 1
+ node_19 --> H011 13 1 0.500 0 ==> 1
+ node_22 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 38:
+
+Branch lengths and linkages for tree #38
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 24 root 0 0 0
+ 23 24 0 0 0
+ 21 23 2 2 2
+ 20 21 2 2 3
+ 18 20 3 3 3
+ 15 18 1 0 1
+H002 (1) 15 0 0 0
+H009 (12) 15 1 1 1
+ 17 18 0 0 1
+ 16 17 1 1 1
+H008 (4) 16 0 0 1
+H006 (13) 16 1 0 1
+H014 (5) 17 1 1 2
+ 19 20 1 0 1
+H007 (3) 19 1 1 1
+H012 (11) 19 1 1 1
+H011 (14) 19 1 1 1
+H013 (6) 21 0 0 0
+H001 (7) 23 2 2 2
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (10) 22 1 1 1
+H000 (9) 23 0 0 0
+H010 (2) 24 1 1 1
+-------------------------------------------------------------------------
+Sum 22
+
+Tree length = 22
+Consistency index (CI) = 0.5909
+Homoplasy index (HI) = 0.4091
+CI excluding uninformative characters = 0.5500
+HI excluding uninformative characters = 0.4500
+Retention index (RI) = 0.7955
+Rescaled consistency index (RC) = 0.4700
+
+ /--------- H002
+ /----------------15
+ | \--------- H009
+ |
+ /--------18 /--------- H008
+ | | /-------16
+ | | | \--------- H006
+ | \-------17
+ /-------20 \------------------ H014
+ | |
+ | | /--------- H007
+ | | |
+ /-------21 \--------------------------19--------- H012
+ | | |
+ | | \--------- H011
+ | |
+ | \---------------------------------------------- H013
+ |
+ /-------23------------------------------------------------------- H001
+ | |
+ | | /--------- H003
+ | +--------------------------------------------22
+--------24 | \--------- H005
+ | |
+ | \------------------------------------------------------- H000
+ |
+ \---------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_21 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_21 --> node_20 8 1 1.000 2 ==> 1
+ 10 1 0.500 2 ==> 1
+ node_20 --> node_18 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ 13 1 0.500 0 ==> 1
+ node_18 --> node_15 9 1 0.333 2 --> 1
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_17 --> node_16 11 1 0.500 2 ==> 1
+ node_16 --> H006 9 1 0.333 2 --> 1
+ node_17 --> H014 10 1 0.500 1 ==> 2
+ node_20 --> node_19 9 1 0.333 2 --> 1
+ node_19 --> H007 12 1 0.333 2 ==> 1
+ node_19 --> H012 11 1 0.500 2 ==> 1
+ node_19 --> H011 13 1 0.500 0 ==> 1
+ node_23 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+ node_24 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 39:
+
+Branch lengths and linkages for tree #39
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 22 23 0 0 0
+ 20 22 2 2 2
+ 19 20 1 1 2
+ 17 19 2 2 3
+ 16 17 2 0 2
+ 15 16 1 1 1
+H002 (1) 15 0 0 0
+H009 (12) 15 1 1 1
+H006 (13) 15 1 1 1
+H008 (4) 16 1 1 1
+H014 (5) 17 0 0 1
+ 18 19 2 1 2
+H007 (3) 18 1 1 1
+H012 (11) 18 1 1 1
+H011 (14) 18 1 1 1
+H013 (6) 20 0 0 0
+H001 (7) 22 2 2 2
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (10) 21 1 1 1
+H000 (9) 22 0 0 0
+H010 (2) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 22
+
+Tree length = 22
+Consistency index (CI) = 0.5909
+Homoplasy index (HI) = 0.4091
+CI excluding uninformative characters = 0.5500
+HI excluding uninformative characters = 0.4500
+Retention index (RI) = 0.7955
+Rescaled consistency index (RC) = 0.4700
+
+ /--------- H002
+ |
+ /-------15--------- H009
+ | |
+ /-------16 \--------- H006
+ | |
+ /--------17 \------------------ H008
+ | |
+ | \--------------------------- H014
+ /-------19
+ | | /--------- H007
+ | | |
+ | \--------------------------18--------- H012
+ /-------20 |
+ | | \--------- H011
+ | |
+ | \---------------------------------------------- H013
+ |
+ +------------------------------------------------------- H001
+ /-------22
+ | | /--------- H003
+ | +--------------------------------------------21
+ | | \--------- H005
+--------23 |
+ | \------------------------------------------------------- H000
+ |
+ \---------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_20 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_20 --> node_19 8 1 1.000 2 ==> 1
+ node_19 --> node_17 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_17 --> node_16 10 1 0.500 2 --> 1
+ 13 1 0.500 0 --> 1
+ node_16 --> node_15 9 1 0.500 2 ==> 1
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_15 --> H006 11 1 0.333 2 ==> 1
+ node_16 --> H008 11 1 0.333 2 ==> 1
+ node_19 --> node_18 9 1 0.500 2 ==> 1
+ 10 1 0.500 2 --> 1
+ node_18 --> H007 12 1 0.333 2 ==> 1
+ node_18 --> H012 11 1 0.333 2 ==> 1
+ node_18 --> H011 13 1 0.500 0 ==> 1
+ node_22 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 40:
+
+Branch lengths and linkages for tree #40
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 22 23 0 0 0
+ 20 22 2 2 2
+ 19 20 2 2 3
+ 17 19 3 3 3
+ 15 17 1 0 1
+H002 (1) 15 0 0 0
+H009 (12) 15 1 1 1
+H006 (13) 15 1 1 1
+ 16 17 0 0 1
+H008 (4) 16 1 1 1
+H014 (5) 16 1 1 1
+ 18 19 1 0 1
+H007 (3) 18 1 1 1
+H012 (11) 18 1 1 1
+H011 (14) 18 1 1 1
+H013 (6) 20 0 0 0
+H001 (7) 22 2 2 2
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (10) 21 1 1 1
+H000 (9) 22 0 0 0
+H010 (2) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 22
+
+Tree length = 22
+Consistency index (CI) = 0.5909
+Homoplasy index (HI) = 0.4091
+CI excluding uninformative characters = 0.5500
+HI excluding uninformative characters = 0.4500
+Retention index (RI) = 0.7955
+Rescaled consistency index (RC) = 0.4700
+
+ /---------- H002
+ |
+ /---------15---------- H009
+ | |
+ | \---------- H006
+ /--------17
+ | | /---------- H008
+ | \---------16
+ | \---------- H014
+ /---------19
+ | | /---------- H007
+ | | |
+ | \-------------------18---------- H012
+ /--------20 |
+ | | \---------- H011
+ | |
+ | \------------------------------------------ H013
+ |
+ +---------------------------------------------------- H001
+ /---------22
+ | | /---------- H003
+ | +----------------------------------------21
+ | | \---------- H005
+---------23 |
+ | \---------------------------------------------------- H000
+ |
+ \--------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_20 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_20 --> node_19 8 1 1.000 2 ==> 1
+ 10 1 0.500 2 ==> 1
+ node_19 --> node_17 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ 13 1 0.500 0 ==> 1
+ node_17 --> node_15 9 1 0.500 2 --> 1
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_15 --> H006 11 1 0.333 2 ==> 1
+ node_16 --> H008 11 1 0.333 2 ==> 1
+ node_16 --> H014 10 1 0.500 1 ==> 2
+ node_19 --> node_18 9 1 0.500 2 --> 1
+ node_18 --> H007 12 1 0.333 2 ==> 1
+ node_18 --> H012 11 1 0.333 2 ==> 1
+ node_18 --> H011 13 1 0.500 0 ==> 1
+ node_22 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 41:
+
+Branch lengths and linkages for tree #41
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 22 root 0 0 0
+ 21 22 0 0 0
+ 19 21 2 2 2
+ 18 19 2 2 2
+ 16 18 3 3 3
+ 15 16 1 1 1
+H002 (1) 15 0 0 0
+H009 (12) 15 1 1 1
+H006 (13) 15 1 1 1
+H008 (4) 16 1 1 1
+H014 (5) 16 1 1 1
+ 17 18 1 1 1
+H007 (3) 17 1 1 1
+H012 (11) 17 1 1 1
+H011 (14) 17 1 1 1
+H013 (6) 19 0 0 0
+H001 (7) 21 2 2 2
+ 20 21 1 1 1
+H003 (8) 20 1 1 1
+H005 (10) 20 1 1 1
+H000 (9) 21 0 0 0
+H010 (2) 22 1 1 1
+-------------------------------------------------------------------------
+Sum 22
+
+Tree length = 22
+Consistency index (CI) = 0.5909
+Homoplasy index (HI) = 0.4091
+CI excluding uninformative characters = 0.5500
+HI excluding uninformative characters = 0.4500
+Retention index (RI) = 0.7955
+Rescaled consistency index (RC) = 0.4700
+
+ /---------- H002
+ |
+ /---------15---------- H009
+ | |
+ | \---------- H006
+ /--------16
+ | +--------------------- H008
+ | |
+ | \--------------------- H014
+ /---------18
+ | | /---------- H007
+ | | |
+ | \-------------------17---------- H012
+ /--------19 |
+ | | \---------- H011
+ | |
+ | \------------------------------------------ H013
+ |
+ +---------------------------------------------------- H001
+ /---------21
+ | | /---------- H003
+ | +----------------------------------------20
+ | | \---------- H005
+---------22 |
+ | \---------------------------------------------------- H000
+ |
+ \--------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_19 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_19 --> node_18 8 1 1.000 2 ==> 1
+ 10 1 0.500 2 ==> 1
+ node_18 --> node_16 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ 13 1 0.500 0 ==> 1
+ node_16 --> node_15 9 1 0.500 2 ==> 1
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_15 --> H006 11 1 0.333 2 ==> 1
+ node_16 --> H008 11 1 0.333 2 ==> 1
+ node_16 --> H014 10 1 0.500 1 ==> 2
+ node_18 --> node_17 9 1 0.500 2 ==> 1
+ node_17 --> H007 12 1 0.333 2 ==> 1
+ node_17 --> H012 11 1 0.333 2 ==> 1
+ node_17 --> H011 13 1 0.500 0 ==> 1
+ node_21 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_21 --> node_20 3 1 1.000 2 ==> 1
+ node_20 --> H003 4 1 1.000 2 ==> 1
+ node_20 --> H005 12 1 0.333 2 ==> 1
+ node_22 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 42:
+
+Branch lengths and linkages for tree #42
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 22 root 0 0 0
+ 21 22 0 0 0
+ 19 21 2 2 2
+ 18 19 3 3 3
+ 17 18 1 1 1
+ 16 17 3 3 3
+ 15 16 1 1 1
+H002 (1) 15 0 0 0
+H014 (5) 15 2 2 2
+H009 (12) 15 1 1 1
+H008 (4) 16 1 1 1
+H006 (13) 16 0 0 0
+H012 (11) 17 0 0 0
+H007 (3) 18 1 1 1
+H011 (14) 18 1 1 1
+H013 (6) 19 0 0 0
+H001 (7) 21 2 2 2
+ 20 21 1 1 1
+H003 (8) 20 1 1 1
+H005 (10) 20 1 1 1
+H000 (9) 21 0 0 0
+H010 (2) 22 1 1 1
+-------------------------------------------------------------------------
+Sum 22
+
+Tree length = 22
+Consistency index (CI) = 0.5909
+Homoplasy index (HI) = 0.4091
+CI excluding uninformative characters = 0.5500
+HI excluding uninformative characters = 0.4500
+Retention index (RI) = 0.7955
+Rescaled consistency index (RC) = 0.4700
+
+ /--------- H002
+ |
+ /-------15--------- H014
+ | |
+ | \--------- H009
+ /-------16
+ | +------------------ H008
+ | |
+ /--------17 \------------------ H006
+ | |
+ | \--------------------------- H012
+ /-------18
+ | +------------------------------------- H007
+ | |
+ /-------19 \------------------------------------- H011
+ | |
+ | \---------------------------------------------- H013
+ |
+ +------------------------------------------------------- H001
+ /-------21
+ | | /--------- H003
+ | +--------------------------------------------20
+ | | \--------- H005
+--------22 |
+ | \------------------------------------------------------- H000
+ |
+ \---------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_19 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_19 --> node_18 8 1 1.000 2 ==> 1
+ 9 1 0.333 2 ==> 1
+ 10 1 0.500 2 ==> 1
+ node_18 --> node_17 11 1 0.500 2 ==> 1
+ node_17 --> node_16 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ 13 1 0.500 0 ==> 1
+ node_16 --> node_15 11 1 0.500 1 ==> 2
+ node_15 --> H014 9 1 0.333 1 ==> 2
+ 10 1 0.500 1 ==> 2
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_16 --> H008 9 1 0.333 1 ==> 2
+ node_18 --> H007 12 1 0.333 2 ==> 1
+ node_18 --> H011 13 1 0.500 0 ==> 1
+ node_21 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_21 --> node_20 3 1 1.000 2 ==> 1
+ node_20 --> H003 4 1 1.000 2 ==> 1
+ node_20 --> H005 12 1 0.333 2 ==> 1
+ node_22 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 43:
+
+Branch lengths and linkages for tree #43
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 25 root 0 0 0
+ 24 25 0 0 0
+ 22 24 2 2 3
+ 21 22 3 3 4
+ 20 21 2 1 3
+ 19 20 1 1 1
+ 18 19 0 0 1
+ 15 18 0 0 1
+H002 (1) 15 0 0 0
+H009 (12) 15 1 1 1
+ 17 18 2 2 3
+ 16 17 0 0 1
+H007 (3) 16 2 1 2
+H011 (14) 16 0 0 1
+H012 (11) 17 2 0 2
+H006 (13) 19 1 0 1
+H008 (4) 20 1 0 1
+H014 (5) 21 0 0 0
+H013 (6) 22 0 0 0
+H001 (7) 24 2 2 2
+ 23 24 1 1 1
+H003 (8) 23 1 1 1
+H005 (10) 23 1 1 1
+H000 (9) 24 0 0 1
+H010 (2) 25 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7727
+Rescaled consistency index (RC) = 0.4368
+
+ /------- H002
+ /-------------15
+ | \------- H009
+ |
+ /-----18 /------- H007
+ | | /------16
+ | | | \------- H011
+ /-----19 \-----17
+ | | \--------------- H012
+ | |
+ /------20 \----------------------------- H006
+ | |
+ /-----21 \------------------------------------ H008
+ | |
+ /-----22 \-------------------------------------------- H014
+ | |
+ | \--------------------------------------------------- H013
+ |
+ +---------------------------------------------------------- H001
+ /------24
+ | | /------- H003
+ | +-------------------------------------------------23
+ | | \------- H005
+------25 |
+ | \---------------------------------------------------------- H000
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_24 --> node_22 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_22 --> node_21 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_21 --> node_20 10 1 1.000 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_20 --> node_19 9 1 1.000 2 ==> 1
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_18 --> node_17 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_17 --> H012 11 1 0.333 2 --> 1
+ 13 1 0.333 1 --> 0
+ node_19 --> H006 11 1 0.333 2 --> 1
+ node_20 --> H008 11 1 0.333 2 --> 1
+ node_24 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_24 --> node_23 3 1 1.000 2 ==> 1
+ node_23 --> H003 4 1 1.000 2 ==> 1
+ node_23 --> H005 12 1 0.333 2 ==> 1
+ node_25 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 44:
+
+Branch lengths and linkages for tree #44
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 25 root 0 0 0
+ 24 25 0 0 0
+ 22 24 2 2 3
+ 21 22 3 3 4
+ 20 21 2 1 3
+ 15 20 1 0 1
+H002 (1) 15 0 0 0
+H009 (12) 15 1 1 1
+ 19 20 1 1 1
+ 18 19 1 0 1
+ 17 18 2 2 3
+ 16 17 1 1 1
+H007 (3) 16 2 1 2
+H011 (14) 16 0 0 1
+H012 (11) 17 1 0 1
+H006 (13) 18 0 0 0
+H008 (4) 19 0 0 1
+H014 (5) 21 0 0 0
+H013 (6) 22 0 0 0
+H001 (7) 24 2 2 2
+ 23 24 1 1 1
+H003 (8) 23 1 1 1
+H005 (10) 23 1 1 1
+H000 (9) 24 0 0 1
+H010 (2) 25 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7727
+Rescaled consistency index (RC) = 0.4368
+
+ /------- H002
+ /---------------------------15
+ | \------- H009
+ |
+ | /------- H007
+ | /------16
+ /------20 | \------- H011
+ | | /-----17
+ | | | \--------------- H012
+ | | /-----18
+ /-----21 | | \---------------------- H006
+ | | \-----19
+ | | \----------------------------- H008
+ /-----22 |
+ | | \-------------------------------------------- H014
+ | |
+ | \--------------------------------------------------- H013
+ |
+ +---------------------------------------------------------- H001
+ /------24
+ | | /------- H003
+ | +-------------------------------------------------23
+ | | \------- H005
+------25 |
+ | \---------------------------------------------------------- H000
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_24 --> node_22 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_22 --> node_21 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_21 --> node_20 10 1 1.000 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_20 --> node_15 9 1 0.500 2 --> 1
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_20 --> node_19 11 1 0.500 2 ==> 1
+ node_19 --> node_18 9 1 0.500 2 --> 1
+ node_18 --> node_17 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_17 --> node_16 11 1 0.500 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_17 --> H012 13 1 0.333 1 --> 0
+ node_24 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_24 --> node_23 3 1 1.000 2 ==> 1
+ node_23 --> H003 4 1 1.000 2 ==> 1
+ node_23 --> H005 12 1 0.333 2 ==> 1
+ node_25 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 45:
+
+Branch lengths and linkages for tree #45
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 25 root 0 0 0
+ 24 25 0 0 0
+ 22 24 2 2 3
+ 21 22 3 3 4
+ 20 21 2 1 3
+ 19 20 1 1 1
+ 15 19 0 0 1
+H002 (1) 15 0 0 0
+H009 (12) 15 1 1 1
+ 18 19 0 0 1
+ 17 18 2 2 3
+ 16 17 0 0 1
+H007 (3) 16 2 1 2
+H011 (14) 16 0 0 1
+H012 (11) 17 2 0 2
+H006 (13) 18 1 0 1
+H008 (4) 20 1 0 1
+H014 (5) 21 0 0 0
+H013 (6) 22 0 0 0
+H001 (7) 24 2 2 2
+ 23 24 1 1 1
+H003 (8) 23 1 1 1
+H005 (10) 23 1 1 1
+H000 (9) 24 0 0 1
+H010 (2) 25 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7727
+Rescaled consistency index (RC) = 0.4368
+
+ /------- H002
+ /--------------------15
+ | \------- H009
+ |
+ | /------- H007
+ /-----19 /------16
+ | | | \------- H011
+ | | /-----17
+ | | | \--------------- H012
+ /------20 \-----18
+ | | \---------------------- H006
+ | |
+ /-----21 \------------------------------------ H008
+ | |
+ /-----22 \-------------------------------------------- H014
+ | |
+ | \--------------------------------------------------- H013
+ |
+ +---------------------------------------------------------- H001
+ /------24
+ | | /------- H003
+ | +-------------------------------------------------23
+ | | \------- H005
+------25 |
+ | \---------------------------------------------------------- H000
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_24 --> node_22 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_22 --> node_21 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_21 --> node_20 10 1 1.000 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_20 --> node_19 9 1 1.000 2 ==> 1
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_18 --> node_17 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_17 --> H012 11 1 0.333 2 --> 1
+ 13 1 0.333 1 --> 0
+ node_18 --> H006 11 1 0.333 2 --> 1
+ node_20 --> H008 11 1 0.333 2 --> 1
+ node_24 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_24 --> node_23 3 1 1.000 2 ==> 1
+ node_23 --> H003 4 1 1.000 2 ==> 1
+ node_23 --> H005 12 1 0.333 2 ==> 1
+ node_25 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 46:
+
+Branch lengths and linkages for tree #46
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 24 root 0 0 0
+ 23 24 0 0 0
+ 21 23 2 2 3
+ 20 21 3 3 4
+ 19 20 2 2 3
+H002 (1) 19 0 0 0
+ 18 19 0 0 1
+ 16 18 2 2 3
+ 15 16 0 0 1
+H007 (3) 15 1 1 2
+H011 (14) 15 1 0 1
+H012 (11) 16 1 0 2
+ 17 18 2 0 2
+H008 (4) 17 1 1 1
+H006 (13) 17 0 0 0
+H009 (12) 19 2 1 2
+H014 (5) 20 0 0 0
+H001 (7) 21 0 0 0
+H013 (6) 23 2 2 2
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (10) 22 1 1 1
+H000 (9) 23 0 0 1
+H010 (2) 24 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7727
+Rescaled consistency index (RC) = 0.4368
+
+ /-------------------------------- H002
+ |
+ | /-------- H007
+ | /------15
+ | | \-------- H011
+ | /------16
+ /-------19 | \---------------- H012
+ | +------18
+ | | | /-------- H008
+ | | \--------------17
+ /------20 | \-------- H006
+ | | |
+ | | \-------------------------------- H009
+ /------21 |
+ | | \----------------------------------------- H014
+ | |
+ | \------------------------------------------------- H001
+ |
+ +--------------------------------------------------------- H013
+ /------23
+ | | /-------- H003
+ | +-----------------------------------------------22
+ | | \-------- H005
+-------24 |
+ | \--------------------------------------------------------- H000
+ |
+ \----------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_21 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_21 --> node_20 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_20 --> node_19 9 1 0.500 2 ==> 1
+ 10 1 1.000 2 ==> 1
+ node_18 --> node_16 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ node_15 --> H011 13 1 0.333 0 --> 1
+ node_16 --> H012 11 1 0.500 2 --> 1
+ node_18 --> node_17 11 1 0.500 2 --> 1
+ 13 1 0.333 0 --> 1
+ node_17 --> H008 9 1 0.500 1 ==> 2
+ node_19 --> H009 12 1 0.333 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_23 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+ node_24 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 47:
+
+Branch lengths and linkages for tree #47
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 25 root 0 0 0
+ 24 25 0 0 0
+ 22 24 0 0 3
+ 21 22 2 2 3
+ 20 21 3 1 4
+ 19 20 2 2 3
+H002 (1) 19 0 0 0
+ 18 19 0 0 1
+ 16 18 2 2 3
+ 15 16 0 0 1
+H007 (3) 15 1 1 2
+H011 (14) 15 1 0 1
+H012 (11) 16 1 0 2
+ 17 18 2 0 2
+H008 (4) 17 1 1 1
+H006 (13) 17 0 0 0
+H009 (12) 19 2 1 2
+H014 (5) 20 0 0 0
+H001 (7) 21 0 0 2
+H013 (6) 22 2 0 2
+ 23 24 1 1 1
+H003 (8) 23 1 1 1
+H005 (10) 23 1 1 1
+H000 (9) 24 0 0 1
+H010 (2) 25 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7727
+Rescaled consistency index (RC) = 0.4368
+
+ /----------------------------- H002
+ |
+ | /------- H007
+ | /------15
+ | | \------- H011
+ | /-----16
+ /-----19 | \--------------- H012
+ | +-----18
+ | | | /------- H008
+ | | \-------------17
+ /------20 | \------- H006
+ | | |
+ | | \----------------------------- H009
+ /-----21 |
+ | | \------------------------------------ H014
+ | |
+ /-----22 \-------------------------------------------- H001
+ | |
+ | \--------------------------------------------------- H013
+ |
+ /------24 /------- H003
+ | +-------------------------------------------------23
+ | | \------- H005
+------25 |
+ | \---------------------------------------------------------- H000
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_21 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_21 --> node_20 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_20 --> node_19 9 1 0.500 2 ==> 1
+ 10 1 1.000 2 ==> 1
+ node_18 --> node_16 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ node_15 --> H011 13 1 0.333 0 --> 1
+ node_16 --> H012 11 1 0.500 2 --> 1
+ node_18 --> node_17 11 1 0.500 2 --> 1
+ 13 1 0.333 0 --> 1
+ node_17 --> H008 9 1 0.500 1 ==> 2
+ node_19 --> H009 12 1 0.333 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_22 --> H013 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ node_24 --> node_23 3 1 1.000 2 ==> 1
+ node_23 --> H003 4 1 1.000 2 ==> 1
+ node_23 --> H005 12 1 0.333 2 ==> 1
+ node_25 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 48:
+
+Branch lengths and linkages for tree #48
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 22 23 0 0 0
+ 20 22 2 2 3
+ 19 20 3 3 4
+ 18 19 2 1 3
+ 17 18 1 1 1
+ 16 17 0 0 1
+H002 (1) 16 0 0 0
+ 15 16 2 2 3
+H007 (3) 15 2 1 2
+H012 (11) 15 2 1 2
+H011 (14) 15 0 0 1
+H009 (12) 16 1 1 1
+H006 (13) 17 1 0 1
+H008 (4) 18 1 0 1
+H014 (5) 19 0 0 0
+H013 (6) 20 0 0 0
+H001 (7) 22 2 2 2
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (10) 21 1 1 1
+H000 (9) 22 0 0 1
+H010 (2) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7727
+Rescaled consistency index (RC) = 0.4368
+
+ /---------------- H002
+ |
+ | /-------- H007
+ | |
+ /------16------15-------- H012
+ | | |
+ | | \-------- H011
+ /------17 |
+ | | \---------------- H009
+ | |
+ /-------18 \------------------------ H006
+ | |
+ /------19 \-------------------------------- H008
+ | |
+ /------20 \----------------------------------------- H014
+ | |
+ | \------------------------------------------------- H013
+ |
+ +--------------------------------------------------------- H001
+ /------22
+ | | /-------- H003
+ | +-----------------------------------------------21
+ | | \-------- H005
+-------23 |
+ | \--------------------------------------------------------- H000
+ |
+ \----------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_20 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_20 --> node_19 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_19 --> node_18 10 1 1.000 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_18 --> node_17 9 1 1.000 2 ==> 1
+ node_16 --> node_15 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_15 --> H012 11 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_16 --> H009 12 1 0.333 2 ==> 1
+ node_17 --> H006 11 1 0.333 2 --> 1
+ node_18 --> H008 11 1 0.333 2 --> 1
+ node_22 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 49:
+
+Branch lengths and linkages for tree #49
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 25 root 0 0 0
+ 24 25 0 0 0
+ 22 24 2 2 3
+ 21 22 3 3 4
+ 20 21 1 1 3
+ 18 20 1 0 1
+H002 (1) 18 0 0 0
+ 17 18 0 0 1
+ 16 17 2 2 3
+H007 (3) 16 1 0 2
+ 15 16 0 0 1
+H012 (11) 15 1 1 2
+H011 (14) 15 1 0 1
+H009 (12) 17 2 0 2
+ 19 20 2 1 2
+H008 (4) 19 0 0 1
+H006 (13) 19 1 0 1
+H014 (5) 21 0 0 0
+H001 (7) 22 0 0 0
+H013 (6) 24 2 2 2
+ 23 24 1 1 1
+H003 (8) 23 1 1 1
+H005 (10) 23 1 1 1
+H000 (9) 24 0 0 1
+H010 (2) 25 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7727
+Rescaled consistency index (RC) = 0.4368
+
+ /----------------------------- H002
+ |
+ | /--------------- H007
+ /-----18 |
+ | | /-----16 /------- H012
+ | | | \------15
+ | \-----17 \------- H011
+ /------20 |
+ | | \---------------------- H009
+ | |
+ | | /------- H008
+ /-----21 \---------------------------19
+ | | \------- H006
+ | |
+ /-----22 \-------------------------------------------- H014
+ | |
+ | \--------------------------------------------------- H001
+ |
+ +---------------------------------------------------------- H013
+ /------24
+ | | /------- H003
+ | +-------------------------------------------------23
+ | | \------- H005
+------25 |
+ | \---------------------------------------------------------- H000
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_24 --> node_22 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_22 --> node_21 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_21 --> node_20 10 1 1.000 2 ==> 1
+ node_20 --> node_18 9 1 0.500 2 --> 1
+ node_17 --> node_16 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 --> 1
+ node_15 --> H012 11 1 0.500 2 ==> 1
+ node_15 --> H011 13 1 0.333 0 --> 1
+ node_17 --> H009 12 1 0.333 2 --> 1
+ 13 1 0.333 0 --> 1
+ node_20 --> node_19 11 1 0.500 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_19 --> H006 9 1 0.500 2 --> 1
+ node_24 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ node_24 --> node_23 3 1 1.000 2 ==> 1
+ node_23 --> H003 4 1 1.000 2 ==> 1
+ node_23 --> H005 12 1 0.333 2 ==> 1
+ node_25 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 50:
+
+Branch lengths and linkages for tree #50
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 24 root 0 0 0
+ 23 24 0 0 0
+ 21 23 2 2 2
+ 20 21 3 3 3
+ 19 20 0 0 1
+ 18 19 3 3 3
+ 17 18 0 0 1
+H002 (1) 17 0 0 0
+ 16 17 0 0 1
+ 15 16 1 1 1
+H008 (4) 15 1 0 1
+H006 (13) 15 0 0 1
+H014 (5) 16 2 1 2
+H009 (12) 18 1 0 1
+H007 (3) 19 1 0 1
+H012 (11) 20 1 1 1
+H011 (14) 20 1 1 1
+H013 (6) 21 0 0 0
+H001 (7) 23 2 2 2
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (10) 22 1 1 1
+H000 (9) 23 0 0 0
+H010 (2) 24 1 1 1
+-------------------------------------------------------------------------
+Sum 22
+
+Tree length = 22
+Consistency index (CI) = 0.5909
+Homoplasy index (HI) = 0.4091
+CI excluding uninformative characters = 0.5500
+HI excluding uninformative characters = 0.4500
+Retention index (RI) = 0.7955
+Rescaled consistency index (RC) = 0.4700
+
+ /---------------------- H002
+ |
+ | /------- H008
+ /-----17 /------15
+ | | | \------- H006
+ | \-----16
+ /-----18 \--------------- H014
+ | |
+ /------19 \----------------------------- H009
+ | |
+ | \------------------------------------ H007
+ /-----20
+ | +-------------------------------------------- H012
+ | |
+ /-----21 \-------------------------------------------- H011
+ | |
+ | \--------------------------------------------------- H013
+ |
+ +---------------------------------------------------------- H001
+ /------23
+ | | /------- H003
+ | +-------------------------------------------------22
+ | | \------- H005
+------24 |
+ | \---------------------------------------------------------- H000
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_21 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_21 --> node_20 8 1 1.000 2 ==> 1
+ 9 1 0.333 2 ==> 1
+ 10 1 0.500 2 ==> 1
+ node_19 --> node_18 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ 13 1 0.500 0 ==> 1
+ node_16 --> node_15 11 1 0.500 2 ==> 1
+ node_15 --> H008 9 1 0.333 1 --> 2
+ node_16 --> H014 9 1 0.333 1 --> 2
+ 10 1 0.500 1 ==> 2
+ node_18 --> H009 12 1 0.333 2 --> 1
+ node_19 --> H007 12 1 0.333 2 --> 1
+ node_20 --> H012 11 1 0.500 2 ==> 1
+ node_20 --> H011 13 1 0.500 0 ==> 1
+ node_23 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+ node_24 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 51:
+
+Branch lengths and linkages for tree #51
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 26 root 0 0 0
+ 25 26 0 0 0
+ 23 25 0 0 3
+ 22 23 2 2 3
+ 21 22 3 1 4
+ 20 21 1 1 3
+ 18 20 1 0 1
+H002 (1) 18 0 0 0
+ 17 18 0 0 1
+ 16 17 2 2 3
+H007 (3) 16 1 0 2
+ 15 16 0 0 1
+H012 (11) 15 1 1 2
+H011 (14) 15 1 0 1
+H009 (12) 17 2 0 2
+ 19 20 2 1 2
+H008 (4) 19 0 0 1
+H006 (13) 19 1 0 1
+H014 (5) 21 0 0 0
+H001 (7) 22 0 0 2
+H013 (6) 23 2 0 2
+ 24 25 1 1 1
+H003 (8) 24 1 1 1
+H005 (10) 24 1 1 1
+H000 (9) 25 0 0 1
+H010 (2) 26 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7727
+Rescaled consistency index (RC) = 0.4368
+
+ /--------------------------- H002
+ |
+ | /------------- H007
+ /----18 |
+ | | /-----16 /------- H012
+ | | | \----15
+ | \-----17 \------- H011
+ /-----20 |
+ | | \-------------------- H009
+ | |
+ | | /------- H008
+ /----21 \------------------------19
+ | | \------- H006
+ | |
+ /-----22 \---------------------------------------- H014
+ | |
+ /-----23 \---------------------------------------------- H001
+ | |
+ | \----------------------------------------------------- H013
+ |
+ /----25 /------- H003
+ | +---------------------------------------------------24
+ | | \------- H005
+------26 |
+ | \------------------------------------------------------------ H000
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_22 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_22 --> node_21 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_21 --> node_20 10 1 1.000 2 ==> 1
+ node_20 --> node_18 9 1 0.500 2 --> 1
+ node_17 --> node_16 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 --> 1
+ node_15 --> H012 11 1 0.500 2 ==> 1
+ node_15 --> H011 13 1 0.333 0 --> 1
+ node_17 --> H009 12 1 0.333 2 --> 1
+ 13 1 0.333 0 --> 1
+ node_20 --> node_19 11 1 0.500 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_19 --> H006 9 1 0.500 2 --> 1
+ node_23 --> H013 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ node_25 --> node_24 3 1 1.000 2 ==> 1
+ node_24 --> H003 4 1 1.000 2 ==> 1
+ node_24 --> H005 12 1 0.333 2 ==> 1
+ node_26 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 52:
+
+Branch lengths and linkages for tree #52
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 24 root 0 0 0
+ 23 24 0 0 0
+ 21 23 2 2 2
+ 20 21 3 3 3
+ 19 20 0 0 1
+ 18 19 3 3 3
+ 17 18 0 0 1
+H002 (1) 17 0 0 0
+ 16 17 0 0 1
+ 15 16 1 1 1
+H008 (4) 15 1 0 1
+H014 (5) 15 1 1 2
+H006 (13) 16 1 0 1
+H009 (12) 18 1 0 1
+H007 (3) 19 1 0 1
+H012 (11) 20 1 1 1
+H011 (14) 20 1 1 1
+H013 (6) 21 0 0 0
+H001 (7) 23 2 2 2
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (10) 22 1 1 1
+H000 (9) 23 0 0 0
+H010 (2) 24 1 1 1
+-------------------------------------------------------------------------
+Sum 22
+
+Tree length = 22
+Consistency index (CI) = 0.5909
+Homoplasy index (HI) = 0.4091
+CI excluding uninformative characters = 0.5500
+HI excluding uninformative characters = 0.4500
+Retention index (RI) = 0.7955
+Rescaled consistency index (RC) = 0.4700
+
+ /---------------------- H002
+ |
+ | /------- H008
+ /-----17 /------15
+ | | | \------- H014
+ | \-----16
+ /-----18 \--------------- H006
+ | |
+ /------19 \----------------------------- H009
+ | |
+ | \------------------------------------ H007
+ /-----20
+ | +-------------------------------------------- H012
+ | |
+ /-----21 \-------------------------------------------- H011
+ | |
+ | \--------------------------------------------------- H013
+ |
+ +---------------------------------------------------------- H001
+ /------23
+ | | /------- H003
+ | +-------------------------------------------------22
+ | | \------- H005
+------24 |
+ | \---------------------------------------------------------- H000
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_21 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_21 --> node_20 8 1 1.000 2 ==> 1
+ 9 1 0.500 2 ==> 1
+ 10 1 0.500 2 ==> 1
+ node_19 --> node_18 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ 13 1 0.500 0 ==> 1
+ node_16 --> node_15 9 1 0.500 1 ==> 2
+ node_15 --> H008 11 1 0.333 2 --> 1
+ node_15 --> H014 10 1 0.500 1 ==> 2
+ node_16 --> H006 11 1 0.333 2 --> 1
+ node_18 --> H009 12 1 0.333 2 --> 1
+ node_19 --> H007 12 1 0.333 2 --> 1
+ node_20 --> H012 11 1 0.333 2 ==> 1
+ node_20 --> H011 13 1 0.500 0 ==> 1
+ node_23 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+ node_24 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 53:
+
+Branch lengths and linkages for tree #53
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 25 root 0 0 0
+ 24 25 0 0 0
+ 22 24 2 2 3
+ 21 22 3 3 4
+ 20 21 2 1 3
+ 19 20 1 1 1
+ 18 19 0 0 1
+H002 (1) 18 0 0 0
+ 17 18 0 0 1
+ 16 17 2 2 3
+H007 (3) 16 2 0 2
+ 15 16 0 0 1
+H012 (11) 15 2 1 2
+H011 (14) 15 0 0 1
+H009 (12) 17 1 0 1
+H006 (13) 19 1 0 1
+H008 (4) 20 1 0 1
+H014 (5) 21 0 0 0
+H001 (7) 22 0 0 0
+H013 (6) 24 2 2 2
+ 23 24 1 1 1
+H003 (8) 23 1 1 1
+H005 (10) 23 1 1 1
+H000 (9) 24 0 0 1
+H010 (2) 25 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7727
+Rescaled consistency index (RC) = 0.4368
+
+ /--------------------------- H002
+ |
+ | /------------- H007
+ /----18 |
+ | | /-----16 /------- H012
+ | | | \----15
+ | \-----17 \------- H011
+ /-----19 |
+ | | \-------------------- H009
+ | |
+ /----20 \--------------------------------- H006
+ | |
+ /-----21 \---------------------------------------- H008
+ | |
+ /-----22 \---------------------------------------------- H014
+ | |
+ | \----------------------------------------------------- H001
+ |
+ +------------------------------------------------------------ H013
+ /----24
+ | | /------- H003
+ | +---------------------------------------------------23
+ | | \------- H005
+------25 |
+ | \------------------------------------------------------------ H000
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_24 --> node_22 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_22 --> node_21 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_21 --> node_20 10 1 1.000 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_20 --> node_19 9 1 1.000 2 ==> 1
+ node_17 --> node_16 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 --> 1
+ 13 1 0.333 1 --> 0
+ node_15 --> H012 11 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_17 --> H009 12 1 0.333 2 --> 1
+ node_19 --> H006 11 1 0.333 2 --> 1
+ node_20 --> H008 11 1 0.333 2 --> 1
+ node_24 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ node_24 --> node_23 3 1 1.000 2 ==> 1
+ node_23 --> H003 4 1 1.000 2 ==> 1
+ node_23 --> H005 12 1 0.333 2 ==> 1
+ node_25 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 54:
+
+Branch lengths and linkages for tree #54
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 24 root 0 0 0
+ 23 24 0 0 0
+ 21 23 2 2 3
+ 20 21 3 3 4
+ 19 20 2 1 3
+ 18 19 1 1 1
+ 15 18 0 0 1
+H002 (1) 15 0 0 0
+H009 (12) 15 1 1 1
+ 17 18 2 2 3
+ 16 17 0 0 1
+H007 (3) 16 2 1 2
+H011 (14) 16 0 0 1
+H012 (11) 17 2 0 2
+H006 (13) 18 1 0 1
+H008 (4) 19 1 0 1
+H014 (5) 20 0 0 0
+H013 (6) 21 0 0 0
+H001 (7) 23 2 2 2
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (10) 22 1 1 1
+H000 (9) 23 0 0 1
+H010 (2) 24 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7727
+Rescaled consistency index (RC) = 0.4368
+
+ /-------- H002
+ /--------------15
+ | \-------- H009
+ |
+ | /-------- H007
+ | /------16
+ /------18 | \-------- H011
+ | +------17
+ | | \---------------- H012
+ /-------19 |
+ | | \------------------------ H006
+ | |
+ /------20 \-------------------------------- H008
+ | |
+ /------21 \----------------------------------------- H014
+ | |
+ | \------------------------------------------------- H013
+ |
+ +--------------------------------------------------------- H001
+ /------23
+ | | /-------- H003
+ | +-----------------------------------------------22
+ | | \-------- H005
+-------24 |
+ | \--------------------------------------------------------- H000
+ |
+ \----------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_21 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_21 --> node_20 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_20 --> node_19 10 1 1.000 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_19 --> node_18 9 1 1.000 2 ==> 1
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_18 --> node_17 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_17 --> H012 11 1 0.333 2 --> 1
+ 13 1 0.333 1 --> 0
+ node_18 --> H006 11 1 0.333 2 --> 1
+ node_19 --> H008 11 1 0.333 2 --> 1
+ node_23 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+ node_24 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 55:
+
+Branch lengths and linkages for tree #55
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 26 root 0 0 0
+ 25 26 0 0 0
+ 23 25 0 0 3
+ 22 23 2 2 3
+ 21 22 3 1 4
+ 20 21 2 1 3
+ 19 20 1 1 1
+ 18 19 0 0 1
+H002 (1) 18 0 0 0
+ 17 18 0 0 1
+ 16 17 2 2 3
+H007 (3) 16 2 0 2
+ 15 16 0 0 1
+H012 (11) 15 2 1 2
+H011 (14) 15 0 0 1
+H009 (12) 17 1 0 1
+H006 (13) 19 1 0 1
+H008 (4) 20 1 0 1
+H014 (5) 21 0 0 0
+H013 (6) 22 0 0 2
+H001 (7) 23 2 0 2
+ 24 25 1 1 1
+H003 (8) 24 1 1 1
+H005 (10) 24 1 1 1
+H000 (9) 25 0 0 1
+H010 (2) 26 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7727
+Rescaled consistency index (RC) = 0.4368
+
+ /------------------------ H002
+ |
+ | /------------ H007
+ /----18 |
+ | | /----16 /------ H012
+ | | | \----15
+ | \----17 \------ H011
+ /----19 |
+ | | \------------------ H009
+ | |
+ /-----20 \------------------------------ H006
+ | |
+ /----21 \------------------------------------ H008
+ | |
+ /----22 \------------------------------------------- H014
+ | |
+ /----23 \------------------------------------------------- H013
+ | |
+ | \------------------------------------------------------- H001
+ |
+ /----25 /------ H003
+ | +-----------------------------------------------------24
+ | | \------ H005
+-----26 |
+ | \------------------------------------------------------------- H000
+ |
+ \------------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_22 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_22 --> node_21 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_21 --> node_20 10 1 1.000 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_20 --> node_19 9 1 1.000 2 ==> 1
+ node_17 --> node_16 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 --> 1
+ 13 1 0.333 1 --> 0
+ node_15 --> H012 11 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_17 --> H009 12 1 0.333 2 --> 1
+ node_19 --> H006 11 1 0.333 2 --> 1
+ node_20 --> H008 11 1 0.333 2 --> 1
+ node_23 --> H001 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ node_25 --> node_24 3 1 1.000 2 ==> 1
+ node_24 --> H003 4 1 1.000 2 ==> 1
+ node_24 --> H005 12 1 0.333 2 ==> 1
+ node_26 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 56:
+
+Branch lengths and linkages for tree #56
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 26 root 0 0 0
+ 25 26 0 0 0
+ 23 25 0 0 3
+ 22 23 2 2 3
+ 21 22 3 1 4
+ 20 21 2 1 3
+ 19 20 1 1 1
+ 18 19 0 0 1
+H002 (1) 18 0 0 0
+ 17 18 0 0 1
+ 16 17 2 2 3
+H007 (3) 16 2 0 2
+ 15 16 0 0 1
+H012 (11) 15 2 1 2
+H011 (14) 15 0 0 1
+H009 (12) 17 1 0 1
+H006 (13) 19 1 0 1
+H008 (4) 20 1 0 1
+H014 (5) 21 0 0 0
+H001 (7) 22 0 0 2
+H013 (6) 23 2 0 2
+ 24 25 1 1 1
+H003 (8) 24 1 1 1
+H005 (10) 24 1 1 1
+H000 (9) 25 0 0 1
+H010 (2) 26 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7727
+Rescaled consistency index (RC) = 0.4368
+
+ /------------------------ H002
+ |
+ | /------------ H007
+ /----18 |
+ | | /----16 /------ H012
+ | | | \----15
+ | \----17 \------ H011
+ /----19 |
+ | | \------------------ H009
+ | |
+ /-----20 \------------------------------ H006
+ | |
+ /----21 \------------------------------------ H008
+ | |
+ /----22 \------------------------------------------- H014
+ | |
+ /----23 \------------------------------------------------- H001
+ | |
+ | \------------------------------------------------------- H013
+ |
+ /----25 /------ H003
+ | +-----------------------------------------------------24
+ | | \------ H005
+-----26 |
+ | \------------------------------------------------------------- H000
+ |
+ \------------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_22 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_22 --> node_21 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_21 --> node_20 10 1 1.000 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_20 --> node_19 9 1 1.000 2 ==> 1
+ node_17 --> node_16 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 --> 1
+ 13 1 0.333 1 --> 0
+ node_15 --> H012 11 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_17 --> H009 12 1 0.333 2 --> 1
+ node_19 --> H006 11 1 0.333 2 --> 1
+ node_20 --> H008 11 1 0.333 2 --> 1
+ node_23 --> H013 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ node_25 --> node_24 3 1 1.000 2 ==> 1
+ node_24 --> H003 4 1 1.000 2 ==> 1
+ node_24 --> H005 12 1 0.333 2 ==> 1
+ node_26 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 57:
+
+Branch lengths and linkages for tree #57
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 24 root 0 0 0
+ 23 24 0 0 0
+ 21 23 2 2 2
+ 20 21 3 3 3
+ 19 20 1 1 1
+ 18 19 3 3 3
+ 17 18 0 0 1
+ 16 17 1 1 1
+ 15 16 0 0 1
+H002 (1) 15 0 0 0
+H009 (12) 15 1 1 1
+H014 (5) 16 2 1 2
+H008 (4) 17 1 0 1
+H006 (13) 18 0 0 0
+H012 (11) 19 0 0 0
+H007 (3) 20 1 1 1
+H011 (14) 20 1 1 1
+H013 (6) 21 0 0 0
+H001 (7) 23 2 2 2
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (10) 22 1 1 1
+H000 (9) 23 0 0 0
+H010 (2) 24 1 1 1
+-------------------------------------------------------------------------
+Sum 22
+
+Tree length = 22
+Consistency index (CI) = 0.5909
+Homoplasy index (HI) = 0.4091
+CI excluding uninformative characters = 0.5500
+HI excluding uninformative characters = 0.4500
+Retention index (RI) = 0.7955
+Rescaled consistency index (RC) = 0.4700
+
+ /------- H002
+ /------15
+ | \------- H009
+ /-----16
+ | \--------------- H014
+ /-----17
+ | \---------------------- H008
+ /-----18
+ | \----------------------------- H006
+ /------19
+ | \------------------------------------ H012
+ |
+ /-----20-------------------------------------------- H007
+ | |
+ /-----21 \-------------------------------------------- H011
+ | |
+ | \--------------------------------------------------- H013
+ |
+ +---------------------------------------------------------- H001
+ /------23
+ | | /------- H003
+ | +-------------------------------------------------22
+ | | \------- H005
+------24 |
+ | \---------------------------------------------------------- H000
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_21 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_21 --> node_20 8 1 1.000 2 ==> 1
+ 9 1 0.333 2 ==> 1
+ 10 1 0.500 2 ==> 1
+ node_20 --> node_19 11 1 0.500 2 ==> 1
+ node_19 --> node_18 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ 13 1 0.500 0 ==> 1
+ node_17 --> node_16 11 1 0.500 1 ==> 2
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_16 --> H014 9 1 0.333 1 --> 2
+ 10 1 0.500 1 ==> 2
+ node_17 --> H008 9 1 0.333 1 --> 2
+ node_20 --> H007 12 1 0.333 2 ==> 1
+ node_20 --> H011 13 1 0.500 0 ==> 1
+ node_23 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+ node_24 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 58:
+
+Branch lengths and linkages for tree #58
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 21 root 0 0 0
+ 20 21 0 0 0
+ 18 20 2 2 2
+ 17 18 3 3 3
+ 16 17 3 3 3
+H002 (1) 16 0 0 0
+ 15 16 1 1 1
+H008 (4) 15 1 1 1
+H014 (5) 15 1 1 1
+H009 (12) 16 1 1 1
+H006 (13) 16 1 1 1
+H007 (3) 17 1 1 1
+H012 (11) 17 1 1 1
+H011 (14) 17 1 1 1
+H013 (6) 18 0 0 0
+H001 (7) 20 2 2 2
+ 19 20 1 1 1
+H003 (8) 19 1 1 1
+H005 (10) 19 1 1 1
+H000 (9) 20 0 0 0
+H010 (2) 21 1 1 1
+-------------------------------------------------------------------------
+Sum 22
+
+Tree length = 22
+Consistency index (CI) = 0.5909
+Homoplasy index (HI) = 0.4091
+CI excluding uninformative characters = 0.5500
+HI excluding uninformative characters = 0.4500
+Retention index (RI) = 0.7955
+Rescaled consistency index (RC) = 0.4700
+
+ /--------------------- H002
+ |
+ | /---------- H008
+ +---------15
+ /--------16 \---------- H014
+ | |
+ | +--------------------- H009
+ | |
+ | \--------------------- H006
+ /---------17
+ | +------------------------------- H007
+ | |
+ | +------------------------------- H012
+ /--------18 |
+ | | \------------------------------- H011
+ | |
+ | \------------------------------------------ H013
+ |
+ +---------------------------------------------------- H001
+ /---------20
+ | | /---------- H003
+ | +----------------------------------------19
+ | | \---------- H005
+---------21 |
+ | \---------------------------------------------------- H000
+ |
+ \--------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_20 --> node_18 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_18 --> node_17 8 1 1.000 2 ==> 1
+ 9 1 0.500 2 ==> 1
+ 10 1 0.500 2 ==> 1
+ node_17 --> node_16 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ 13 1 0.500 0 ==> 1
+ node_16 --> node_15 9 1 0.500 1 ==> 2
+ node_15 --> H008 11 1 0.333 2 ==> 1
+ node_15 --> H014 10 1 0.500 1 ==> 2
+ node_16 --> H009 12 1 0.333 2 ==> 1
+ node_16 --> H006 11 1 0.333 2 ==> 1
+ node_17 --> H007 12 1 0.333 2 ==> 1
+ node_17 --> H012 11 1 0.333 2 ==> 1
+ node_17 --> H011 13 1 0.500 0 ==> 1
+ node_20 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_20 --> node_19 3 1 1.000 2 ==> 1
+ node_19 --> H003 4 1 1.000 2 ==> 1
+ node_19 --> H005 12 1 0.333 2 ==> 1
+ node_21 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 59:
+
+Branch lengths and linkages for tree #59
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 22 23 0 0 0
+ 20 22 2 2 3
+ 19 20 3 3 4
+ 18 19 1 1 3
+ 16 18 1 0 1
+H002 (1) 16 0 0 0
+ 15 16 2 2 3
+H007 (3) 15 1 1 2
+H012 (11) 15 1 1 2
+H011 (14) 15 1 0 1
+H009 (12) 16 2 1 2
+ 17 18 2 1 2
+H008 (4) 17 0 0 1
+H006 (13) 17 1 0 1
+H014 (5) 19 0 0 0
+H001 (7) 20 0 0 0
+H013 (6) 22 2 2 2
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (10) 21 1 1 1
+H000 (9) 22 0 0 1
+H010 (2) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7727
+Rescaled consistency index (RC) = 0.4368
+
+ /------------------ H002
+ |
+ | /--------- H007
+ | |
+ /-------16-------15--------- H012
+ | | |
+ | | \--------- H011
+ | |
+ /--------18 \------------------ H009
+ | |
+ | | /--------- H008
+ /-------19 \----------------17
+ | | \--------- H006
+ | |
+ /-------20 \------------------------------------- H014
+ | |
+ | \---------------------------------------------- H001
+ |
+ +------------------------------------------------------- H013
+ /-------22
+ | | /--------- H003
+ | +--------------------------------------------21
+ | | \--------- H005
+--------23 |
+ | \------------------------------------------------------- H000
+ |
+ \---------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_20 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_20 --> node_19 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_19 --> node_18 10 1 1.000 2 ==> 1
+ node_18 --> node_16 9 1 0.500 2 --> 1
+ node_16 --> node_15 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ node_15 --> H012 11 1 0.500 2 ==> 1
+ node_15 --> H011 13 1 0.333 0 --> 1
+ node_16 --> H009 12 1 0.333 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_18 --> node_17 11 1 0.500 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_17 --> H006 9 1 0.500 2 --> 1
+ node_22 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 60:
+
+Branch lengths and linkages for tree #60
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 24 root 0 0 0
+ 23 24 0 0 0
+ 21 23 2 2 3
+ 20 21 3 3 4
+ 19 20 2 1 2
+ 18 19 1 1 1
+H002 (1) 18 0 0 0
+ 17 18 0 0 1
+ 16 17 2 2 3
+H007 (3) 16 2 0 2
+ 15 16 0 0 1
+H012 (11) 15 2 1 2
+H011 (14) 15 0 0 1
+H009 (12) 17 1 0 1
+H006 (13) 18 1 1 1
+H008 (4) 19 1 1 1
+H014 (5) 20 0 0 0
+H001 (7) 21 0 0 0
+H013 (6) 23 2 2 2
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (10) 22 1 1 1
+H000 (9) 23 0 0 1
+H010 (2) 24 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7727
+Rescaled consistency index (RC) = 0.4368
+
+ /----------------------------- H002
+ |
+ | /--------------- H007
+ | |
+ | /-----16 /------- H012
+ /-----18 | \------15
+ | +-----17 \------- H011
+ | | |
+ | | \---------------------- H009
+ /------19 |
+ | | \----------------------------- H006
+ | |
+ /-----20 \------------------------------------ H008
+ | |
+ /-----21 \-------------------------------------------- H014
+ | |
+ | \--------------------------------------------------- H001
+ |
+ +---------------------------------------------------------- H013
+ /------23
+ | | /------- H003
+ | +-------------------------------------------------22
+ | | \------- H005
+------24 |
+ | \---------------------------------------------------------- H000
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_21 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_21 --> node_20 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_20 --> node_19 10 1 1.000 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_19 --> node_18 9 1 1.000 2 ==> 1
+ node_17 --> node_16 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 --> 1
+ 13 1 0.333 1 --> 0
+ node_15 --> H012 11 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_17 --> H009 12 1 0.333 2 --> 1
+ node_18 --> H006 11 1 0.333 2 ==> 1
+ node_19 --> H008 11 1 0.333 2 ==> 1
+ node_23 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+ node_24 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 61:
+
+Branch lengths and linkages for tree #61
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 22 23 0 0 0
+ 20 22 2 2 3
+ 19 20 3 3 4
+ 18 19 3 2 3
+H002 (1) 18 0 0 0
+ 17 18 1 1 1
+ 16 17 2 2 3
+ 15 16 1 1 1
+H007 (3) 15 2 1 2
+H011 (14) 15 0 0 1
+H012 (11) 16 1 0 1
+H008 (4) 17 1 1 1
+H006 (13) 17 0 0 0
+H009 (12) 18 1 1 1
+H014 (5) 19 0 0 0
+H001 (7) 20 0 0 0
+H013 (6) 22 2 2 2
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (10) 21 1 1 1
+H000 (9) 22 0 0 1
+H010 (2) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7727
+Rescaled consistency index (RC) = 0.4368
+
+ /-------------------------------- H002
+ |
+ | /-------- H007
+ | /------15
+ | | \-------- H011
+ | /------16
+ /-------18 | \---------------- H012
+ | | |
+ | +------17------------------------ H008
+ | | |
+ /------19 | \------------------------ H006
+ | | |
+ | | \-------------------------------- H009
+ /------20 |
+ | | \----------------------------------------- H014
+ | |
+ | \------------------------------------------------- H001
+ |
+ +--------------------------------------------------------- H013
+ /------22
+ | | /-------- H003
+ | +-----------------------------------------------21
+ | | \-------- H005
+-------23 |
+ | \--------------------------------------------------------- H000
+ |
+ \----------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_20 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_20 --> node_19 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_19 --> node_18 9 1 0.500 2 ==> 1
+ 10 1 1.000 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_18 --> node_17 11 1 0.500 2 ==> 1
+ node_17 --> node_16 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_16 --> node_15 11 1 0.500 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_16 --> H012 13 1 0.333 1 --> 0
+ node_17 --> H008 9 1 0.500 1 ==> 2
+ node_18 --> H009 12 1 0.333 2 ==> 1
+ node_22 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 62:
+
+Branch lengths and linkages for tree #62
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 24 root 0 0 0
+ 23 24 0 0 0
+ 21 23 0 0 3
+ 20 21 2 2 3
+ 19 20 3 1 4
+ 18 19 3 2 3
+H002 (1) 18 0 0 0
+ 17 18 1 1 1
+ 16 17 2 2 3
+ 15 16 1 1 1
+H007 (3) 15 2 1 2
+H011 (14) 15 0 0 1
+H012 (11) 16 1 0 1
+H008 (4) 17 1 1 1
+H006 (13) 17 0 0 0
+H009 (12) 18 1 1 1
+H014 (5) 19 0 0 0
+H001 (7) 20 0 0 2
+H013 (6) 21 2 0 2
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (10) 22 1 1 1
+H000 (9) 23 0 0 1
+H010 (2) 24 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7727
+Rescaled consistency index (RC) = 0.4368
+
+ /----------------------------- H002
+ |
+ | /------- H007
+ | /------15
+ | | \------- H011
+ | /-----16
+ /-----18 | \--------------- H012
+ | | |
+ | +-----17---------------------- H008
+ | | |
+ /------19 | \---------------------- H006
+ | | |
+ | | \----------------------------- H009
+ /-----20 |
+ | | \------------------------------------ H014
+ | |
+ /-----21 \-------------------------------------------- H001
+ | |
+ | \--------------------------------------------------- H013
+ |
+ /------23 /------- H003
+ | +-------------------------------------------------22
+ | | \------- H005
+------24 |
+ | \---------------------------------------------------------- H000
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_20 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_20 --> node_19 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_19 --> node_18 9 1 0.500 2 ==> 1
+ 10 1 1.000 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_18 --> node_17 11 1 0.500 2 ==> 1
+ node_17 --> node_16 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_16 --> node_15 11 1 0.500 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_16 --> H012 13 1 0.333 1 --> 0
+ node_17 --> H008 9 1 0.500 1 ==> 2
+ node_18 --> H009 12 1 0.333 2 ==> 1
+ node_21 --> H013 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+ node_24 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 63:
+
+Branch lengths and linkages for tree #63
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 24 root 0 0 0
+ 23 24 0 0 0
+ 21 23 0 0 3
+ 20 21 2 2 3
+ 19 20 3 1 4
+ 18 19 1 1 3
+ 16 18 1 0 1
+H002 (1) 16 0 0 0
+ 15 16 2 2 3
+H007 (3) 15 1 1 2
+H012 (11) 15 1 1 2
+H011 (14) 15 1 0 1
+H009 (12) 16 2 1 2
+ 17 18 2 1 2
+H008 (4) 17 0 0 1
+H006 (13) 17 1 0 1
+H014 (5) 19 0 0 0
+H001 (7) 20 0 0 2
+H013 (6) 21 2 0 2
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (10) 22 1 1 1
+H000 (9) 23 0 0 1
+H010 (2) 24 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7727
+Rescaled consistency index (RC) = 0.4368
+
+ /---------------- H002
+ |
+ | /-------- H007
+ | |
+ /------16------15-------- H012
+ | | |
+ | | \-------- H011
+ | |
+ /------18 \---------------- H009
+ | |
+ | | /-------- H008
+ /-------19 \--------------17
+ | | \-------- H006
+ | |
+ /------20 \-------------------------------- H014
+ | |
+ /------21 \----------------------------------------- H001
+ | |
+ | \------------------------------------------------- H013
+ |
+ /------23 /-------- H003
+ | +-----------------------------------------------22
+ | | \-------- H005
+-------24 |
+ | \--------------------------------------------------------- H000
+ |
+ \----------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_20 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_20 --> node_19 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_19 --> node_18 10 1 1.000 2 ==> 1
+ node_18 --> node_16 9 1 0.500 2 --> 1
+ node_16 --> node_15 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ node_15 --> H012 11 1 0.500 2 ==> 1
+ node_15 --> H011 13 1 0.333 0 --> 1
+ node_16 --> H009 12 1 0.333 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_18 --> node_17 11 1 0.500 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_17 --> H006 9 1 0.500 2 --> 1
+ node_21 --> H013 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+ node_24 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 64:
+
+Branch lengths and linkages for tree #64
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 22 23 0 0 0
+ 20 22 0 0 3
+ 19 20 2 2 3
+ 18 19 3 1 4
+ 17 18 2 1 2
+ 16 17 1 1 1
+H002 (1) 16 0 0 0
+ 15 16 2 2 3
+H007 (3) 15 2 1 2
+H012 (11) 15 2 1 2
+H011 (14) 15 0 0 1
+H009 (12) 16 1 1 1
+H006 (13) 16 1 1 1
+H008 (4) 17 1 1 1
+H014 (5) 18 0 0 0
+H001 (7) 19 0 0 2
+H013 (6) 20 2 0 2
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (10) 21 1 1 1
+H000 (9) 22 0 0 1
+H010 (2) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7727
+Rescaled consistency index (RC) = 0.4368
+
+ /---------------- H002
+ |
+ | /-------- H007
+ | |
+ +------15-------- H012
+ /------16 |
+ | | \-------- H011
+ | |
+ | +---------------- H009
+ /------17 |
+ | | \---------------- H006
+ | |
+ /-------18 \------------------------ H008
+ | |
+ /------19 \-------------------------------- H014
+ | |
+ /------20 \----------------------------------------- H001
+ | |
+ | \------------------------------------------------- H013
+ |
+ /------22 /-------- H003
+ | +-----------------------------------------------21
+ | | \-------- H005
+-------23 |
+ | \--------------------------------------------------------- H000
+ |
+ \----------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_20 --> node_19 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_19 --> node_18 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_18 --> node_17 10 1 1.000 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_17 --> node_16 9 1 1.000 2 ==> 1
+ node_16 --> node_15 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_15 --> H012 11 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_16 --> H009 12 1 0.333 2 ==> 1
+ node_16 --> H006 11 1 0.333 2 ==> 1
+ node_17 --> H008 11 1 0.333 2 ==> 1
+ node_20 --> H013 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 65:
+
+Branch lengths and linkages for tree #65
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 22 root 0 0 0
+ 21 22 0 0 0
+ 19 21 2 2 3
+ 18 19 3 3 4
+ 17 18 2 1 2
+ 16 17 1 1 1
+H002 (1) 16 0 0 0
+ 15 16 2 2 3
+H007 (3) 15 2 1 2
+H012 (11) 15 2 1 2
+H011 (14) 15 0 0 1
+H009 (12) 16 1 1 1
+H006 (13) 16 1 1 1
+H008 (4) 17 1 1 1
+H014 (5) 18 0 0 0
+H001 (7) 19 0 0 0
+H013 (6) 21 2 2 2
+ 20 21 1 1 1
+H003 (8) 20 1 1 1
+H005 (10) 20 1 1 1
+H000 (9) 21 0 0 1
+H010 (2) 22 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7727
+Rescaled consistency index (RC) = 0.4368
+
+ /------------------ H002
+ |
+ | /--------- H007
+ | |
+ +-------15--------- H012
+ /-------16 |
+ | | \--------- H011
+ | |
+ | +------------------ H009
+ /--------17 |
+ | | \------------------ H006
+ | |
+ /-------18 \--------------------------- H008
+ | |
+ /-------19 \------------------------------------- H014
+ | |
+ | \---------------------------------------------- H001
+ |
+ +------------------------------------------------------- H013
+ /-------21
+ | | /--------- H003
+ | +--------------------------------------------20
+ | | \--------- H005
+--------22 |
+ | \------------------------------------------------------- H000
+ |
+ \---------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_19 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_19 --> node_18 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_18 --> node_17 10 1 1.000 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_17 --> node_16 9 1 1.000 2 ==> 1
+ node_16 --> node_15 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_15 --> H012 11 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_16 --> H009 12 1 0.333 2 ==> 1
+ node_16 --> H006 11 1 0.333 2 ==> 1
+ node_17 --> H008 11 1 0.333 2 ==> 1
+ node_21 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ node_21 --> node_20 3 1 1.000 2 ==> 1
+ node_20 --> H003 4 1 1.000 2 ==> 1
+ node_20 --> H005 12 1 0.333 2 ==> 1
+ node_22 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 66:
+
+Branch lengths and linkages for tree #66
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 24 root 0 0 0
+ 23 24 0 0 0
+ 21 23 2 2 3
+ 20 21 3 3 4
+ 19 20 2 1 2
+ 18 19 1 1 1
+H002 (1) 18 0 0 0
+ 17 18 0 0 1
+ 16 17 2 2 3
+ 15 16 0 0 1
+H007 (3) 15 2 1 2
+H011 (14) 15 0 0 1
+H012 (11) 16 2 0 2
+H006 (13) 17 1 0 1
+H009 (12) 18 1 1 1
+H008 (4) 19 1 1 1
+H014 (5) 20 0 0 0
+H013 (6) 21 0 0 0
+H001 (7) 23 2 2 2
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (10) 22 1 1 1
+H000 (9) 23 0 0 1
+H010 (2) 24 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7727
+Rescaled consistency index (RC) = 0.4368
+
+ /----------------------------- H002
+ |
+ | /------- H007
+ | /------15
+ | | \------- H011
+ /-----18 /-----16
+ | | | \--------------- H012
+ | +-----17
+ | | \---------------------- H006
+ /------19 |
+ | | \----------------------------- H009
+ | |
+ /-----20 \------------------------------------ H008
+ | |
+ /-----21 \-------------------------------------------- H014
+ | |
+ | \--------------------------------------------------- H013
+ |
+ +---------------------------------------------------------- H001
+ /------23
+ | | /------- H003
+ | +-------------------------------------------------22
+ | | \------- H005
+------24 |
+ | \---------------------------------------------------------- H000
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_21 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_21 --> node_20 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_20 --> node_19 10 1 1.000 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_19 --> node_18 9 1 1.000 2 ==> 1
+ node_17 --> node_16 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_16 --> H012 11 1 0.333 2 --> 1
+ 13 1 0.333 1 --> 0
+ node_17 --> H006 11 1 0.333 2 --> 1
+ node_18 --> H009 12 1 0.333 2 ==> 1
+ node_19 --> H008 11 1 0.333 2 ==> 1
+ node_23 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+ node_24 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 67:
+
+Branch lengths and linkages for tree #67
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 26 root 0 0 0
+ 25 26 0 0 0
+ 23 25 0 0 3
+ 22 23 2 2 3
+ 21 22 3 1 4
+ 20 21 2 1 3
+ 19 20 1 1 1
+ 18 19 0 0 1
+ 15 18 0 0 1
+H002 (1) 15 0 0 0
+H009 (12) 15 1 1 1
+ 17 18 2 2 3
+ 16 17 0 0 1
+H007 (3) 16 2 1 2
+H011 (14) 16 0 0 1
+H012 (11) 17 2 0 2
+H006 (13) 19 1 0 1
+H008 (4) 20 1 0 1
+H014 (5) 21 0 0 0
+H013 (6) 22 0 0 2
+H001 (7) 23 2 0 2
+ 24 25 1 1 1
+H003 (8) 24 1 1 1
+H005 (10) 24 1 1 1
+H000 (9) 25 0 0 1
+H010 (2) 26 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7727
+Rescaled consistency index (RC) = 0.4368
+
+ /------- H002
+ /-----------15
+ | \------- H009
+ |
+ /-----18 /------- H007
+ | | /----16
+ | | | \------- H011
+ /----19 \-----17
+ | | \------------- H012
+ | |
+ /-----20 \--------------------------- H006
+ | |
+ /----21 \--------------------------------- H008
+ | |
+ /-----22 \---------------------------------------- H014
+ | |
+ /-----23 \---------------------------------------------- H013
+ | |
+ | \----------------------------------------------------- H001
+ |
+ /----25 /------- H003
+ | +---------------------------------------------------24
+ | | \------- H005
+------26 |
+ | \------------------------------------------------------------ H000
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_22 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_22 --> node_21 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_21 --> node_20 10 1 1.000 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_20 --> node_19 9 1 1.000 2 ==> 1
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_18 --> node_17 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_17 --> H012 11 1 0.333 2 --> 1
+ 13 1 0.333 1 --> 0
+ node_19 --> H006 11 1 0.333 2 --> 1
+ node_20 --> H008 11 1 0.333 2 --> 1
+ node_23 --> H001 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ node_25 --> node_24 3 1 1.000 2 ==> 1
+ node_24 --> H003 4 1 1.000 2 ==> 1
+ node_24 --> H005 12 1 0.333 2 ==> 1
+ node_26 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 68:
+
+Branch lengths and linkages for tree #68
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 25 root 0 0 0
+ 24 25 0 0 0
+ 22 24 0 0 3
+ 21 22 2 2 3
+ 20 21 3 1 4
+ 19 20 2 1 2
+ 18 19 1 1 1
+H002 (1) 18 0 0 0
+ 17 18 0 0 1
+ 16 17 2 2 3
+ 15 16 0 0 1
+H007 (3) 15 2 1 2
+H011 (14) 15 0 0 1
+H012 (11) 16 2 0 2
+H006 (13) 17 1 0 1
+H009 (12) 18 1 1 1
+H008 (4) 19 1 1 1
+H014 (5) 20 0 0 0
+H013 (6) 21 0 0 2
+H001 (7) 22 2 0 2
+ 23 24 1 1 1
+H003 (8) 23 1 1 1
+H005 (10) 23 1 1 1
+H000 (9) 24 0 0 1
+H010 (2) 25 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7727
+Rescaled consistency index (RC) = 0.4368
+
+ /--------------------------- H002
+ |
+ | /------- H007
+ | /----15
+ | | \------- H011
+ /----18 /-----16
+ | | | \------------- H012
+ | +-----17
+ | | \-------------------- H006
+ /-----19 |
+ | | \--------------------------- H009
+ | |
+ /----20 \--------------------------------- H008
+ | |
+ /-----21 \---------------------------------------- H014
+ | |
+ /-----22 \---------------------------------------------- H013
+ | |
+ | \----------------------------------------------------- H001
+ |
+ /----24 /------- H003
+ | +---------------------------------------------------23
+ | | \------- H005
+------25 |
+ | \------------------------------------------------------------ H000
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_21 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_21 --> node_20 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_20 --> node_19 10 1 1.000 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_19 --> node_18 9 1 1.000 2 ==> 1
+ node_17 --> node_16 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_16 --> H012 11 1 0.333 2 --> 1
+ 13 1 0.333 1 --> 0
+ node_17 --> H006 11 1 0.333 2 --> 1
+ node_18 --> H009 12 1 0.333 2 ==> 1
+ node_19 --> H008 11 1 0.333 2 ==> 1
+ node_22 --> H001 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ node_24 --> node_23 3 1 1.000 2 ==> 1
+ node_23 --> H003 4 1 1.000 2 ==> 1
+ node_23 --> H005 12 1 0.333 2 ==> 1
+ node_25 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 69:
+
+Branch lengths and linkages for tree #69
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 22 23 0 0 0
+ 20 22 2 2 3
+ 19 20 3 3 4
+ 18 19 2 1 3
+ 17 18 1 1 1
+ 16 17 0 0 1
+H002 (1) 16 0 0 0
+ 15 16 2 2 3
+H007 (3) 15 2 1 2
+H012 (11) 15 2 1 2
+H011 (14) 15 0 0 1
+H009 (12) 16 1 1 1
+H006 (13) 17 1 0 1
+H008 (4) 18 1 0 1
+H014 (5) 19 0 0 0
+H001 (7) 20 0 0 0
+H013 (6) 22 2 2 2
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (10) 21 1 1 1
+H000 (9) 22 0 0 1
+H010 (2) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7727
+Rescaled consistency index (RC) = 0.4368
+
+ /---------------- H002
+ |
+ | /-------- H007
+ | |
+ /------16------15-------- H012
+ | | |
+ | | \-------- H011
+ /------17 |
+ | | \---------------- H009
+ | |
+ /-------18 \------------------------ H006
+ | |
+ /------19 \-------------------------------- H008
+ | |
+ /------20 \----------------------------------------- H014
+ | |
+ | \------------------------------------------------- H001
+ |
+ +--------------------------------------------------------- H013
+ /------22
+ | | /-------- H003
+ | +-----------------------------------------------21
+ | | \-------- H005
+-------23 |
+ | \--------------------------------------------------------- H000
+ |
+ \----------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_20 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_20 --> node_19 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_19 --> node_18 10 1 1.000 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_18 --> node_17 9 1 1.000 2 ==> 1
+ node_16 --> node_15 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_15 --> H012 11 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_16 --> H009 12 1 0.333 2 ==> 1
+ node_17 --> H006 11 1 0.333 2 --> 1
+ node_18 --> H008 11 1 0.333 2 --> 1
+ node_22 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 70:
+
+Branch lengths and linkages for tree #70
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 24 root 0 0 0
+ 23 24 0 0 0
+ 21 23 0 0 3
+ 20 21 2 2 3
+ 19 20 3 1 4
+ 18 19 2 1 3
+ 17 18 1 1 1
+ 16 17 0 0 1
+H002 (1) 16 0 0 0
+ 15 16 2 2 3
+H007 (3) 15 2 1 2
+H012 (11) 15 2 1 2
+H011 (14) 15 0 0 1
+H009 (12) 16 1 1 1
+H006 (13) 17 1 0 1
+H008 (4) 18 1 0 1
+H014 (5) 19 0 0 0
+H001 (7) 20 0 0 2
+H013 (6) 21 2 0 2
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (10) 22 1 1 1
+H000 (9) 23 0 0 1
+H010 (2) 24 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7727
+Rescaled consistency index (RC) = 0.4368
+
+ /--------------- H002
+ |
+ | /------- H007
+ | |
+ /-----16------15------- H012
+ | | |
+ | | \------- H011
+ /-----17 |
+ | | \--------------- H009
+ | |
+ /-----18 \---------------------- H006
+ | |
+ /------19 \----------------------------- H008
+ | |
+ /-----20 \------------------------------------ H014
+ | |
+ /-----21 \-------------------------------------------- H001
+ | |
+ | \--------------------------------------------------- H013
+ |
+ /------23 /------- H003
+ | +-------------------------------------------------22
+ | | \------- H005
+------24 |
+ | \---------------------------------------------------------- H000
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_20 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_20 --> node_19 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_19 --> node_18 10 1 1.000 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_18 --> node_17 9 1 1.000 2 ==> 1
+ node_16 --> node_15 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_15 --> H012 11 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_16 --> H009 12 1 0.333 2 ==> 1
+ node_17 --> H006 11 1 0.333 2 --> 1
+ node_18 --> H008 11 1 0.333 2 --> 1
+ node_21 --> H013 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+ node_24 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 71:
+
+Branch lengths and linkages for tree #71
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 26 root 0 0 0
+ 25 26 0 0 0
+ 23 25 0 0 3
+ 22 23 2 2 3
+ 21 22 3 1 4
+ 20 21 2 1 3
+ 19 20 1 1 1
+ 15 19 0 0 1
+H002 (1) 15 0 0 0
+H009 (12) 15 1 1 1
+ 18 19 0 0 1
+ 17 18 2 2 3
+ 16 17 0 0 1
+H007 (3) 16 2 1 2
+H011 (14) 16 0 0 1
+H012 (11) 17 2 0 2
+H006 (13) 18 1 0 1
+H008 (4) 20 1 0 1
+H014 (5) 21 0 0 0
+H013 (6) 22 0 0 2
+H001 (7) 23 2 0 2
+ 24 25 1 1 1
+H003 (8) 24 1 1 1
+H005 (10) 24 1 1 1
+H000 (9) 25 0 0 1
+H010 (2) 26 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7727
+Rescaled consistency index (RC) = 0.4368
+
+ /------- H002
+ /------------------15
+ | \------- H009
+ |
+ | /------- H007
+ /----19 /----16
+ | | | \------- H011
+ | | /-----17
+ | | | \------------- H012
+ /-----20 \-----18
+ | | \-------------------- H006
+ | |
+ /----21 \--------------------------------- H008
+ | |
+ /-----22 \---------------------------------------- H014
+ | |
+ /-----23 \---------------------------------------------- H013
+ | |
+ | \----------------------------------------------------- H001
+ |
+ /----25 /------- H003
+ | +---------------------------------------------------24
+ | | \------- H005
+------26 |
+ | \------------------------------------------------------------ H000
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_22 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_22 --> node_21 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_21 --> node_20 10 1 1.000 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_20 --> node_19 9 1 1.000 2 ==> 1
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_18 --> node_17 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_17 --> H012 11 1 0.333 2 --> 1
+ 13 1 0.333 1 --> 0
+ node_18 --> H006 11 1 0.333 2 --> 1
+ node_20 --> H008 11 1 0.333 2 --> 1
+ node_23 --> H001 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ node_25 --> node_24 3 1 1.000 2 ==> 1
+ node_24 --> H003 4 1 1.000 2 ==> 1
+ node_24 --> H005 12 1 0.333 2 ==> 1
+ node_26 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 72:
+
+Branch lengths and linkages for tree #72
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 25 root 0 0 0
+ 24 25 0 0 0
+ 22 24 0 0 3
+ 21 22 2 2 3
+ 20 21 3 1 4
+ 19 20 2 1 3
+ 18 19 1 1 1
+ 15 18 0 0 1
+H002 (1) 15 0 0 0
+H009 (12) 15 1 1 1
+ 17 18 2 2 3
+ 16 17 0 0 1
+H007 (3) 16 2 1 2
+H011 (14) 16 0 0 1
+H012 (11) 17 2 0 2
+H006 (13) 18 1 0 1
+H008 (4) 19 1 0 1
+H014 (5) 20 0 0 0
+H013 (6) 21 0 0 2
+H001 (7) 22 2 0 2
+ 23 24 1 1 1
+H003 (8) 23 1 1 1
+H005 (10) 23 1 1 1
+H000 (9) 24 0 0 1
+H010 (2) 25 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7727
+Rescaled consistency index (RC) = 0.4368
+
+ /------- H002
+ /-------------15
+ | \------- H009
+ |
+ | /------- H007
+ | /------16
+ /-----18 | \------- H011
+ | +-----17
+ | | \--------------- H012
+ /-----19 |
+ | | \---------------------- H006
+ | |
+ /------20 \----------------------------- H008
+ | |
+ /-----21 \------------------------------------ H014
+ | |
+ /-----22 \-------------------------------------------- H013
+ | |
+ | \--------------------------------------------------- H001
+ |
+ /------24 /------- H003
+ | +-------------------------------------------------23
+ | | \------- H005
+------25 |
+ | \---------------------------------------------------------- H000
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_21 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_21 --> node_20 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_20 --> node_19 10 1 1.000 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_19 --> node_18 9 1 1.000 2 ==> 1
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_18 --> node_17 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_17 --> H012 11 1 0.333 2 --> 1
+ 13 1 0.333 1 --> 0
+ node_18 --> H006 11 1 0.333 2 --> 1
+ node_19 --> H008 11 1 0.333 2 --> 1
+ node_22 --> H001 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ node_24 --> node_23 3 1 1.000 2 ==> 1
+ node_23 --> H003 4 1 1.000 2 ==> 1
+ node_23 --> H005 12 1 0.333 2 ==> 1
+ node_25 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 73:
+
+Branch lengths and linkages for tree #73
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 25 root 0 0 0
+ 24 25 0 0 0
+ 22 24 0 0 3
+ 21 22 2 2 3
+ 20 21 3 1 4
+ 19 20 2 1 2
+ 18 19 1 1 1
+H002 (1) 18 0 0 0
+ 17 18 0 0 1
+ 16 17 2 2 3
+H007 (3) 16 2 0 2
+ 15 16 0 0 1
+H012 (11) 15 2 1 2
+H011 (14) 15 0 0 1
+H009 (12) 17 1 0 1
+H006 (13) 18 1 1 1
+H008 (4) 19 1 1 1
+H014 (5) 20 0 0 0
+H013 (6) 21 0 0 2
+H001 (7) 22 2 0 2
+ 23 24 1 1 1
+H003 (8) 23 1 1 1
+H005 (10) 23 1 1 1
+H000 (9) 24 0 0 1
+H010 (2) 25 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7727
+Rescaled consistency index (RC) = 0.4368
+
+ /--------------------------- H002
+ |
+ | /------------- H007
+ | |
+ | /-----16 /------- H012
+ /----18 | \----15
+ | +-----17 \------- H011
+ | | |
+ | | \-------------------- H009
+ /-----19 |
+ | | \--------------------------- H006
+ | |
+ /----20 \--------------------------------- H008
+ | |
+ /-----21 \---------------------------------------- H014
+ | |
+ /-----22 \---------------------------------------------- H013
+ | |
+ | \----------------------------------------------------- H001
+ |
+ /----24 /------- H003
+ | +---------------------------------------------------23
+ | | \------- H005
+------25 |
+ | \------------------------------------------------------------ H000
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_21 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_21 --> node_20 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_20 --> node_19 10 1 1.000 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_19 --> node_18 9 1 1.000 2 ==> 1
+ node_17 --> node_16 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 --> 1
+ 13 1 0.333 1 --> 0
+ node_15 --> H012 11 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_17 --> H009 12 1 0.333 2 --> 1
+ node_18 --> H006 11 1 0.333 2 ==> 1
+ node_19 --> H008 11 1 0.333 2 ==> 1
+ node_22 --> H001 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ node_24 --> node_23 3 1 1.000 2 ==> 1
+ node_23 --> H003 4 1 1.000 2 ==> 1
+ node_23 --> H005 12 1 0.333 2 ==> 1
+ node_25 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 74:
+
+Branch lengths and linkages for tree #74
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 24 root 0 0 0
+ 23 24 0 0 0
+ 21 23 2 2 2
+ 20 21 3 3 3
+ 19 20 0 0 1
+ 18 19 3 3 3
+ 15 18 0 0 1
+H002 (1) 15 0 0 0
+H009 (12) 15 1 1 1
+ 17 18 0 0 1
+ 16 17 1 1 1
+H008 (4) 16 1 0 1
+H014 (5) 16 1 1 2
+H006 (13) 17 1 0 1
+H012 (11) 19 1 0 1
+H007 (3) 20 1 1 1
+H011 (14) 20 1 1 1
+H013 (6) 21 0 0 0
+H001 (7) 23 2 2 2
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (10) 22 1 1 1
+H000 (9) 23 0 0 0
+H010 (2) 24 1 1 1
+-------------------------------------------------------------------------
+Sum 22
+
+Tree length = 22
+Consistency index (CI) = 0.5909
+Homoplasy index (HI) = 0.4091
+CI excluding uninformative characters = 0.5500
+HI excluding uninformative characters = 0.4500
+Retention index (RI) = 0.7955
+Rescaled consistency index (RC) = 0.4700
+
+ /-------- H002
+ /--------------15
+ | \-------- H009
+ |
+ /------18 /-------- H008
+ | | /------16
+ | | | \-------- H014
+ /-------19 \------17
+ | | \---------------- H006
+ | |
+ | \-------------------------------- H012
+ /------20
+ | +----------------------------------------- H007
+ | |
+ /------21 \----------------------------------------- H011
+ | |
+ | \------------------------------------------------- H013
+ |
+ +--------------------------------------------------------- H001
+ /------23
+ | | /-------- H003
+ | +-----------------------------------------------22
+ | | \-------- H005
+-------24 |
+ | \--------------------------------------------------------- H000
+ |
+ \----------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_21 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_21 --> node_20 8 1 1.000 2 ==> 1
+ 9 1 0.500 2 ==> 1
+ 10 1 0.500 2 ==> 1
+ node_19 --> node_18 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ 13 1 0.500 0 ==> 1
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_17 --> node_16 9 1 0.500 1 ==> 2
+ node_16 --> H008 11 1 0.333 2 --> 1
+ node_16 --> H014 10 1 0.500 1 ==> 2
+ node_17 --> H006 11 1 0.333 2 --> 1
+ node_19 --> H012 11 1 0.333 2 --> 1
+ node_20 --> H007 12 1 0.333 2 ==> 1
+ node_20 --> H011 13 1 0.500 0 ==> 1
+ node_23 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+ node_24 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 75:
+
+Branch lengths and linkages for tree #75
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 24 root 0 0 0
+ 23 24 0 0 0
+ 21 23 2 2 2
+ 20 21 3 3 3
+ 19 20 0 0 1
+ 18 19 3 3 3
+ 17 18 0 0 1
+ 15 17 0 0 1
+H002 (1) 15 0 0 0
+H009 (12) 15 1 1 1
+ 16 17 1 1 1
+H008 (4) 16 1 0 1
+H014 (5) 16 1 1 2
+H006 (13) 18 1 0 1
+H012 (11) 19 1 0 1
+H007 (3) 20 1 1 1
+H011 (14) 20 1 1 1
+H013 (6) 21 0 0 0
+H001 (7) 23 2 2 2
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (10) 22 1 1 1
+H000 (9) 23 0 0 0
+H010 (2) 24 1 1 1
+-------------------------------------------------------------------------
+Sum 22
+
+Tree length = 22
+Consistency index (CI) = 0.5909
+Homoplasy index (HI) = 0.4091
+CI excluding uninformative characters = 0.5500
+HI excluding uninformative characters = 0.4500
+Retention index (RI) = 0.7955
+Rescaled consistency index (RC) = 0.4700
+
+ /-------- H002
+ /------15
+ | \-------- H009
+ /------17
+ | | /-------- H008
+ | \------16
+ /------18 \-------- H014
+ | |
+ /-------19 \------------------------ H006
+ | |
+ | \-------------------------------- H012
+ /------20
+ | +----------------------------------------- H007
+ | |
+ /------21 \----------------------------------------- H011
+ | |
+ | \------------------------------------------------- H013
+ |
+ +--------------------------------------------------------- H001
+ /------23
+ | | /-------- H003
+ | +-----------------------------------------------22
+ | | \-------- H005
+-------24 |
+ | \--------------------------------------------------------- H000
+ |
+ \----------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_21 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_21 --> node_20 8 1 1.000 2 ==> 1
+ 9 1 0.500 2 ==> 1
+ 10 1 0.500 2 ==> 1
+ node_19 --> node_18 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ 13 1 0.500 0 ==> 1
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_17 --> node_16 9 1 0.500 1 ==> 2
+ node_16 --> H008 11 1 0.333 2 --> 1
+ node_16 --> H014 10 1 0.500 1 ==> 2
+ node_18 --> H006 11 1 0.333 2 --> 1
+ node_19 --> H012 11 1 0.333 2 --> 1
+ node_20 --> H007 12 1 0.333 2 ==> 1
+ node_20 --> H011 13 1 0.500 0 ==> 1
+ node_23 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+ node_24 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 76:
+
+Branch lengths and linkages for tree #76
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 22 23 0 0 0
+ 20 22 2 2 2
+ 19 20 3 3 3
+ 18 19 0 0 1
+ 17 18 3 3 3
+ 15 17 0 0 1
+H002 (1) 15 0 0 0
+H009 (12) 15 1 1 1
+ 16 17 1 1 1
+H008 (4) 16 1 0 1
+H014 (5) 16 1 1 2
+H006 (13) 17 1 0 1
+H012 (11) 18 1 0 1
+H007 (3) 19 1 1 1
+H011 (14) 19 1 1 1
+H013 (6) 20 0 0 0
+H001 (7) 22 2 2 2
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (10) 21 1 1 1
+H000 (9) 22 0 0 0
+H010 (2) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 22
+
+Tree length = 22
+Consistency index (CI) = 0.5909
+Homoplasy index (HI) = 0.4091
+CI excluding uninformative characters = 0.5500
+HI excluding uninformative characters = 0.4500
+Retention index (RI) = 0.7955
+Rescaled consistency index (RC) = 0.4700
+
+ /--------- H002
+ /-------15
+ | \--------- H009
+ |
+ | /--------- H008
+ /-------17-------16
+ | | \--------- H014
+ | |
+ /--------18 \------------------ H006
+ | |
+ | \--------------------------- H012
+ /-------19
+ | +------------------------------------- H007
+ | |
+ /-------20 \------------------------------------- H011
+ | |
+ | \---------------------------------------------- H013
+ |
+ +------------------------------------------------------- H001
+ /-------22
+ | | /--------- H003
+ | +--------------------------------------------21
+ | | \--------- H005
+--------23 |
+ | \------------------------------------------------------- H000
+ |
+ \---------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_20 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_20 --> node_19 8 1 1.000 2 ==> 1
+ 9 1 0.500 2 ==> 1
+ 10 1 0.500 2 ==> 1
+ node_18 --> node_17 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ 13 1 0.500 0 ==> 1
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_17 --> node_16 9 1 0.500 1 ==> 2
+ node_16 --> H008 11 1 0.333 2 --> 1
+ node_16 --> H014 10 1 0.500 1 ==> 2
+ node_17 --> H006 11 1 0.333 2 --> 1
+ node_18 --> H012 11 1 0.333 2 --> 1
+ node_19 --> H007 12 1 0.333 2 ==> 1
+ node_19 --> H011 13 1 0.500 0 ==> 1
+ node_22 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 77:
+
+Branch lengths and linkages for tree #77
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 25 root 0 0 0
+ 24 25 0 0 0
+ 22 24 2 2 3
+ 21 22 3 3 4
+ 20 21 2 1 3
+ 15 20 1 0 1
+H002 (1) 15 0 0 0
+H009 (12) 15 1 1 1
+ 19 20 1 1 1
+ 18 19 1 0 1
+ 17 18 2 2 3
+ 16 17 1 1 1
+H007 (3) 16 2 1 2
+H011 (14) 16 0 0 1
+H012 (11) 17 1 0 1
+H006 (13) 18 0 0 0
+H008 (4) 19 0 0 1
+H014 (5) 21 0 0 0
+H001 (7) 22 0 0 0
+H013 (6) 24 2 2 2
+ 23 24 1 1 1
+H003 (8) 23 1 1 1
+H005 (10) 23 1 1 1
+H000 (9) 24 0 0 1
+H010 (2) 25 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7727
+Rescaled consistency index (RC) = 0.4368
+
+ /------- H002
+ /---------------------------15
+ | \------- H009
+ |
+ | /------- H007
+ | /------16
+ /------20 | \------- H011
+ | | /-----17
+ | | | \--------------- H012
+ | | /-----18
+ /-----21 | | \---------------------- H006
+ | | \-----19
+ | | \----------------------------- H008
+ /-----22 |
+ | | \-------------------------------------------- H014
+ | |
+ | \--------------------------------------------------- H001
+ |
+ +---------------------------------------------------------- H013
+ /------24
+ | | /------- H003
+ | +-------------------------------------------------23
+ | | \------- H005
+------25 |
+ | \---------------------------------------------------------- H000
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_24 --> node_22 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_22 --> node_21 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_21 --> node_20 10 1 1.000 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_20 --> node_15 9 1 0.500 2 --> 1
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_20 --> node_19 11 1 0.500 2 ==> 1
+ node_19 --> node_18 9 1 0.500 2 --> 1
+ node_18 --> node_17 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_17 --> node_16 11 1 0.500 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_17 --> H012 13 1 0.333 1 --> 0
+ node_24 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ node_24 --> node_23 3 1 1.000 2 ==> 1
+ node_23 --> H003 4 1 1.000 2 ==> 1
+ node_23 --> H005 12 1 0.333 2 ==> 1
+ node_25 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 78:
+
+Branch lengths and linkages for tree #78
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 26 root 0 0 0
+ 25 26 0 0 0
+ 23 25 0 0 3
+ 22 23 2 2 3
+ 21 22 3 1 4
+ 20 21 2 1 3
+ 15 20 1 0 1
+H002 (1) 15 0 0 0
+H009 (12) 15 1 1 1
+ 19 20 1 1 1
+ 18 19 1 0 1
+ 17 18 2 2 3
+ 16 17 1 1 1
+H007 (3) 16 2 1 2
+H011 (14) 16 0 0 1
+H012 (11) 17 1 0 1
+H006 (13) 18 0 0 0
+H008 (4) 19 0 0 1
+H014 (5) 21 0 0 0
+H001 (7) 22 0 0 2
+H013 (6) 23 2 0 2
+ 24 25 1 1 1
+H003 (8) 24 1 1 1
+H005 (10) 24 1 1 1
+H000 (9) 25 0 0 1
+H010 (2) 26 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7727
+Rescaled consistency index (RC) = 0.4368
+
+ /------- H002
+ /------------------------15
+ | \------- H009
+ |
+ | /------- H007
+ | /----16
+ /-----20 | \------- H011
+ | | /-----17
+ | | | \------------- H012
+ | | /-----18
+ /----21 | | \-------------------- H006
+ | | \----19
+ | | \--------------------------- H008
+ /-----22 |
+ | | \---------------------------------------- H014
+ | |
+ /-----23 \---------------------------------------------- H001
+ | |
+ | \----------------------------------------------------- H013
+ |
+ /----25 /------- H003
+ | +---------------------------------------------------24
+ | | \------- H005
+------26 |
+ | \------------------------------------------------------------ H000
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_22 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_22 --> node_21 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_21 --> node_20 10 1 1.000 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_20 --> node_15 9 1 0.500 2 --> 1
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_20 --> node_19 11 1 0.500 2 ==> 1
+ node_19 --> node_18 9 1 0.500 2 --> 1
+ node_18 --> node_17 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_17 --> node_16 11 1 0.500 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_17 --> H012 13 1 0.333 1 --> 0
+ node_23 --> H013 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ node_25 --> node_24 3 1 1.000 2 ==> 1
+ node_24 --> H003 4 1 1.000 2 ==> 1
+ node_24 --> H005 12 1 0.333 2 ==> 1
+ node_26 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 79:
+
+Branch lengths and linkages for tree #79
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 25 root 0 0 0
+ 24 25 0 0 0
+ 22 24 0 0 3
+ 21 22 2 2 3
+ 20 21 3 1 4
+ 19 20 2 1 2
+ 18 19 1 1 1
+H002 (1) 18 0 0 0
+ 17 18 0 0 1
+ 16 17 2 2 3
+H007 (3) 16 2 0 2
+ 15 16 0 0 1
+H012 (11) 15 2 1 2
+H011 (14) 15 0 0 1
+H009 (12) 17 1 0 1
+H006 (13) 18 1 1 1
+H008 (4) 19 1 1 1
+H014 (5) 20 0 0 0
+H001 (7) 21 0 0 2
+H013 (6) 22 2 0 2
+ 23 24 1 1 1
+H003 (8) 23 1 1 1
+H005 (10) 23 1 1 1
+H000 (9) 24 0 0 1
+H010 (2) 25 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7727
+Rescaled consistency index (RC) = 0.4368
+
+ /--------------------------- H002
+ |
+ | /------------- H007
+ | |
+ | /-----16 /------- H012
+ /----18 | \----15
+ | +-----17 \------- H011
+ | | |
+ | | \-------------------- H009
+ /-----19 |
+ | | \--------------------------- H006
+ | |
+ /----20 \--------------------------------- H008
+ | |
+ /-----21 \---------------------------------------- H014
+ | |
+ /-----22 \---------------------------------------------- H001
+ | |
+ | \----------------------------------------------------- H013
+ |
+ /----24 /------- H003
+ | +---------------------------------------------------23
+ | | \------- H005
+------25 |
+ | \------------------------------------------------------------ H000
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_21 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_21 --> node_20 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_20 --> node_19 10 1 1.000 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_19 --> node_18 9 1 1.000 2 ==> 1
+ node_17 --> node_16 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 --> 1
+ 13 1 0.333 1 --> 0
+ node_15 --> H012 11 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_17 --> H009 12 1 0.333 2 --> 1
+ node_18 --> H006 11 1 0.333 2 ==> 1
+ node_19 --> H008 11 1 0.333 2 ==> 1
+ node_22 --> H013 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ node_24 --> node_23 3 1 1.000 2 ==> 1
+ node_23 --> H003 4 1 1.000 2 ==> 1
+ node_23 --> H005 12 1 0.333 2 ==> 1
+ node_25 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 80:
+
+Branch lengths and linkages for tree #80
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 22 23 0 0 0
+ 20 22 2 2 2
+ 19 20 3 3 3
+ 18 19 0 0 1
+ 17 18 3 3 3
+ 16 17 0 0 1
+H002 (1) 16 0 0 0
+ 15 16 1 1 1
+H008 (4) 15 1 1 1
+H014 (5) 15 1 1 1
+H006 (13) 16 1 1 1
+H009 (12) 17 1 0 1
+H007 (3) 18 1 0 1
+H012 (11) 19 1 1 1
+H011 (14) 19 1 1 1
+H013 (6) 20 0 0 0
+H001 (7) 22 2 2 2
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (10) 21 1 1 1
+H000 (9) 22 0 0 0
+H010 (2) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 22
+
+Tree length = 22
+Consistency index (CI) = 0.5909
+Homoplasy index (HI) = 0.4091
+CI excluding uninformative characters = 0.5500
+HI excluding uninformative characters = 0.4500
+Retention index (RI) = 0.7955
+Rescaled consistency index (RC) = 0.4700
+
+ /---------------- H002
+ |
+ | /-------- H008
+ /------16------15
+ | | \-------- H014
+ | |
+ /------17 \---------------- H006
+ | |
+ /-------18 \------------------------ H009
+ | |
+ | \-------------------------------- H007
+ /------19
+ | +----------------------------------------- H012
+ | |
+ /------20 \----------------------------------------- H011
+ | |
+ | \------------------------------------------------- H013
+ |
+ +--------------------------------------------------------- H001
+ /------22
+ | | /-------- H003
+ | +-----------------------------------------------21
+ | | \-------- H005
+-------23 |
+ | \--------------------------------------------------------- H000
+ |
+ \----------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_20 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_20 --> node_19 8 1 1.000 2 ==> 1
+ 9 1 0.500 2 ==> 1
+ 10 1 0.500 2 ==> 1
+ node_18 --> node_17 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ 13 1 0.500 0 ==> 1
+ node_16 --> node_15 9 1 0.500 1 ==> 2
+ node_15 --> H008 11 1 0.333 2 ==> 1
+ node_15 --> H014 10 1 0.500 1 ==> 2
+ node_16 --> H006 11 1 0.333 2 ==> 1
+ node_17 --> H009 12 1 0.333 2 --> 1
+ node_18 --> H007 12 1 0.333 2 --> 1
+ node_19 --> H012 11 1 0.333 2 ==> 1
+ node_19 --> H011 13 1 0.500 0 ==> 1
+ node_22 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 81:
+
+Branch lengths and linkages for tree #81
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 22 23 0 0 0
+ 20 22 2 2 2
+ 19 20 3 3 3
+ 18 19 0 0 1
+ 17 18 3 3 3
+ 16 17 0 0 1
+H002 (1) 16 0 0 0
+ 15 16 1 1 1
+H008 (4) 15 1 1 1
+H014 (5) 15 1 1 1
+H009 (12) 16 1 1 1
+H006 (13) 17 1 0 1
+H012 (11) 18 1 0 1
+H007 (3) 19 1 1 1
+H011 (14) 19 1 1 1
+H013 (6) 20 0 0 0
+H001 (7) 22 2 2 2
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (10) 21 1 1 1
+H000 (9) 22 0 0 0
+H010 (2) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 22
+
+Tree length = 22
+Consistency index (CI) = 0.5909
+Homoplasy index (HI) = 0.4091
+CI excluding uninformative characters = 0.5500
+HI excluding uninformative characters = 0.4500
+Retention index (RI) = 0.7955
+Rescaled consistency index (RC) = 0.4700
+
+ /---------------- H002
+ |
+ | /-------- H008
+ /------16------15
+ | | \-------- H014
+ | |
+ /------17 \---------------- H009
+ | |
+ /-------18 \------------------------ H006
+ | |
+ | \-------------------------------- H012
+ /------19
+ | +----------------------------------------- H007
+ | |
+ /------20 \----------------------------------------- H011
+ | |
+ | \------------------------------------------------- H013
+ |
+ +--------------------------------------------------------- H001
+ /------22
+ | | /-------- H003
+ | +-----------------------------------------------21
+ | | \-------- H005
+-------23 |
+ | \--------------------------------------------------------- H000
+ |
+ \----------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_20 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_20 --> node_19 8 1 1.000 2 ==> 1
+ 9 1 0.500 2 ==> 1
+ 10 1 0.500 2 ==> 1
+ node_18 --> node_17 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ 13 1 0.500 0 ==> 1
+ node_16 --> node_15 9 1 0.500 1 ==> 2
+ node_15 --> H008 11 1 0.333 2 ==> 1
+ node_15 --> H014 10 1 0.500 1 ==> 2
+ node_16 --> H009 12 1 0.333 2 ==> 1
+ node_17 --> H006 11 1 0.333 2 --> 1
+ node_18 --> H012 11 1 0.333 2 --> 1
+ node_19 --> H007 12 1 0.333 2 ==> 1
+ node_19 --> H011 13 1 0.500 0 ==> 1
+ node_22 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 82:
+
+Branch lengths and linkages for tree #82
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 25 root 0 0 0
+ 24 25 0 0 0
+ 22 24 2 2 3
+ 21 22 3 3 4
+ 20 21 2 1 3
+ 19 20 1 1 1
+ 18 19 0 0 1
+ 15 18 0 0 1
+H002 (1) 15 0 0 0
+H009 (12) 15 1 1 1
+ 17 18 2 2 3
+ 16 17 0 0 1
+H007 (3) 16 2 1 2
+H011 (14) 16 0 0 1
+H012 (11) 17 2 0 2
+H006 (13) 19 1 0 1
+H008 (4) 20 1 0 1
+H014 (5) 21 0 0 0
+H001 (7) 22 0 0 0
+H013 (6) 24 2 2 2
+ 23 24 1 1 1
+H003 (8) 23 1 1 1
+H005 (10) 23 1 1 1
+H000 (9) 24 0 0 1
+H010 (2) 25 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7727
+Rescaled consistency index (RC) = 0.4368
+
+ /------- H002
+ /-------------15
+ | \------- H009
+ |
+ /-----18 /------- H007
+ | | /------16
+ | | | \------- H011
+ /-----19 \-----17
+ | | \--------------- H012
+ | |
+ /------20 \----------------------------- H006
+ | |
+ /-----21 \------------------------------------ H008
+ | |
+ /-----22 \-------------------------------------------- H014
+ | |
+ | \--------------------------------------------------- H001
+ |
+ +---------------------------------------------------------- H013
+ /------24
+ | | /------- H003
+ | +-------------------------------------------------23
+ | | \------- H005
+------25 |
+ | \---------------------------------------------------------- H000
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_24 --> node_22 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_22 --> node_21 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_21 --> node_20 10 1 1.000 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_20 --> node_19 9 1 1.000 2 ==> 1
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_18 --> node_17 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_17 --> H012 11 1 0.333 2 --> 1
+ 13 1 0.333 1 --> 0
+ node_19 --> H006 11 1 0.333 2 --> 1
+ node_20 --> H008 11 1 0.333 2 --> 1
+ node_24 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ node_24 --> node_23 3 1 1.000 2 ==> 1
+ node_23 --> H003 4 1 1.000 2 ==> 1
+ node_23 --> H005 12 1 0.333 2 ==> 1
+ node_25 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 83:
+
+Branch lengths and linkages for tree #83
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 26 root 0 0 0
+ 25 26 0 0 0
+ 23 25 0 0 3
+ 22 23 2 2 3
+ 21 22 3 1 4
+ 20 21 2 1 3
+ 19 20 1 1 1
+ 18 19 0 0 1
+ 15 18 0 0 1
+H002 (1) 15 0 0 0
+H009 (12) 15 1 1 1
+ 17 18 2 2 3
+ 16 17 0 0 1
+H007 (3) 16 2 1 2
+H011 (14) 16 0 0 1
+H012 (11) 17 2 0 2
+H006 (13) 19 1 0 1
+H008 (4) 20 1 0 1
+H014 (5) 21 0 0 0
+H001 (7) 22 0 0 2
+H013 (6) 23 2 0 2
+ 24 25 1 1 1
+H003 (8) 24 1 1 1
+H005 (10) 24 1 1 1
+H000 (9) 25 0 0 1
+H010 (2) 26 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7727
+Rescaled consistency index (RC) = 0.4368
+
+ /------- H002
+ /-----------15
+ | \------- H009
+ |
+ /-----18 /------- H007
+ | | /----16
+ | | | \------- H011
+ /----19 \-----17
+ | | \------------- H012
+ | |
+ /-----20 \--------------------------- H006
+ | |
+ /----21 \--------------------------------- H008
+ | |
+ /-----22 \---------------------------------------- H014
+ | |
+ /-----23 \---------------------------------------------- H001
+ | |
+ | \----------------------------------------------------- H013
+ |
+ /----25 /------- H003
+ | +---------------------------------------------------24
+ | | \------- H005
+------26 |
+ | \------------------------------------------------------------ H000
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_22 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_22 --> node_21 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_21 --> node_20 10 1 1.000 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_20 --> node_19 9 1 1.000 2 ==> 1
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_18 --> node_17 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_17 --> H012 11 1 0.333 2 --> 1
+ 13 1 0.333 1 --> 0
+ node_19 --> H006 11 1 0.333 2 --> 1
+ node_20 --> H008 11 1 0.333 2 --> 1
+ node_23 --> H013 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ node_25 --> node_24 3 1 1.000 2 ==> 1
+ node_24 --> H003 4 1 1.000 2 ==> 1
+ node_24 --> H005 12 1 0.333 2 ==> 1
+ node_26 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 84:
+
+Branch lengths and linkages for tree #84
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 25 root 0 0 0
+ 24 25 0 0 0
+ 22 24 2 2 3
+ 21 22 3 3 4
+ 20 21 2 1 3
+ 19 20 1 1 1
+ 15 19 0 0 1
+H002 (1) 15 0 0 0
+H009 (12) 15 1 1 1
+ 18 19 0 0 1
+ 17 18 2 2 3
+ 16 17 0 0 1
+H007 (3) 16 2 1 2
+H011 (14) 16 0 0 1
+H012 (11) 17 2 0 2
+H006 (13) 18 1 0 1
+H008 (4) 20 1 0 1
+H014 (5) 21 0 0 0
+H001 (7) 22 0 0 0
+H013 (6) 24 2 2 2
+ 23 24 1 1 1
+H003 (8) 23 1 1 1
+H005 (10) 23 1 1 1
+H000 (9) 24 0 0 1
+H010 (2) 25 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7727
+Rescaled consistency index (RC) = 0.4368
+
+ /------- H002
+ /--------------------15
+ | \------- H009
+ |
+ | /------- H007
+ /-----19 /------16
+ | | | \------- H011
+ | | /-----17
+ | | | \--------------- H012
+ /------20 \-----18
+ | | \---------------------- H006
+ | |
+ /-----21 \------------------------------------ H008
+ | |
+ /-----22 \-------------------------------------------- H014
+ | |
+ | \--------------------------------------------------- H001
+ |
+ +---------------------------------------------------------- H013
+ /------24
+ | | /------- H003
+ | +-------------------------------------------------23
+ | | \------- H005
+------25 |
+ | \---------------------------------------------------------- H000
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_24 --> node_22 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_22 --> node_21 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_21 --> node_20 10 1 1.000 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_20 --> node_19 9 1 1.000 2 ==> 1
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_18 --> node_17 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_17 --> H012 11 1 0.333 2 --> 1
+ 13 1 0.333 1 --> 0
+ node_18 --> H006 11 1 0.333 2 --> 1
+ node_20 --> H008 11 1 0.333 2 --> 1
+ node_24 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ node_24 --> node_23 3 1 1.000 2 ==> 1
+ node_23 --> H003 4 1 1.000 2 ==> 1
+ node_23 --> H005 12 1 0.333 2 ==> 1
+ node_25 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 85:
+
+Branch lengths and linkages for tree #85
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 26 root 0 0 0
+ 25 26 0 0 0
+ 23 25 0 0 3
+ 22 23 2 2 3
+ 21 22 3 1 4
+ 20 21 2 1 3
+ 19 20 1 1 1
+ 15 19 0 0 1
+H002 (1) 15 0 0 0
+H009 (12) 15 1 1 1
+ 18 19 0 0 1
+ 17 18 2 2 3
+ 16 17 0 0 1
+H007 (3) 16 2 1 2
+H011 (14) 16 0 0 1
+H012 (11) 17 2 0 2
+H006 (13) 18 1 0 1
+H008 (4) 20 1 0 1
+H014 (5) 21 0 0 0
+H001 (7) 22 0 0 2
+H013 (6) 23 2 0 2
+ 24 25 1 1 1
+H003 (8) 24 1 1 1
+H005 (10) 24 1 1 1
+H000 (9) 25 0 0 1
+H010 (2) 26 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7727
+Rescaled consistency index (RC) = 0.4368
+
+ /------- H002
+ /------------------15
+ | \------- H009
+ |
+ | /------- H007
+ /----19 /----16
+ | | | \------- H011
+ | | /-----17
+ | | | \------------- H012
+ /-----20 \-----18
+ | | \-------------------- H006
+ | |
+ /----21 \--------------------------------- H008
+ | |
+ /-----22 \---------------------------------------- H014
+ | |
+ /-----23 \---------------------------------------------- H001
+ | |
+ | \----------------------------------------------------- H013
+ |
+ /----25 /------- H003
+ | +---------------------------------------------------24
+ | | \------- H005
+------26 |
+ | \------------------------------------------------------------ H000
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_22 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_22 --> node_21 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_21 --> node_20 10 1 1.000 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_20 --> node_19 9 1 1.000 2 ==> 1
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_18 --> node_17 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_17 --> H012 11 1 0.333 2 --> 1
+ 13 1 0.333 1 --> 0
+ node_18 --> H006 11 1 0.333 2 --> 1
+ node_20 --> H008 11 1 0.333 2 --> 1
+ node_23 --> H013 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ node_25 --> node_24 3 1 1.000 2 ==> 1
+ node_24 --> H003 4 1 1.000 2 ==> 1
+ node_24 --> H005 12 1 0.333 2 ==> 1
+ node_26 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 86:
+
+Branch lengths and linkages for tree #86
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 25 root 0 0 0
+ 24 25 0 0 0
+ 22 24 0 0 3
+ 21 22 2 2 3
+ 20 21 3 1 4
+ 19 20 2 1 2
+ 18 19 1 1 1
+H002 (1) 18 0 0 0
+ 17 18 0 0 1
+ 16 17 2 2 3
+ 15 16 0 0 1
+H007 (3) 15 2 1 2
+H011 (14) 15 0 0 1
+H012 (11) 16 2 0 2
+H006 (13) 17 1 0 1
+H009 (12) 18 1 1 1
+H008 (4) 19 1 1 1
+H014 (5) 20 0 0 0
+H001 (7) 21 0 0 2
+H013 (6) 22 2 0 2
+ 23 24 1 1 1
+H003 (8) 23 1 1 1
+H005 (10) 23 1 1 1
+H000 (9) 24 0 0 1
+H010 (2) 25 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7727
+Rescaled consistency index (RC) = 0.4368
+
+ /--------------------------- H002
+ |
+ | /------- H007
+ | /----15
+ | | \------- H011
+ /----18 /-----16
+ | | | \------------- H012
+ | +-----17
+ | | \-------------------- H006
+ /-----19 |
+ | | \--------------------------- H009
+ | |
+ /----20 \--------------------------------- H008
+ | |
+ /-----21 \---------------------------------------- H014
+ | |
+ /-----22 \---------------------------------------------- H001
+ | |
+ | \----------------------------------------------------- H013
+ |
+ /----24 /------- H003
+ | +---------------------------------------------------23
+ | | \------- H005
+------25 |
+ | \------------------------------------------------------------ H000
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_21 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_21 --> node_20 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_20 --> node_19 10 1 1.000 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_19 --> node_18 9 1 1.000 2 ==> 1
+ node_17 --> node_16 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_16 --> H012 11 1 0.333 2 --> 1
+ 13 1 0.333 1 --> 0
+ node_17 --> H006 11 1 0.333 2 --> 1
+ node_18 --> H009 12 1 0.333 2 ==> 1
+ node_19 --> H008 11 1 0.333 2 ==> 1
+ node_22 --> H013 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ node_24 --> node_23 3 1 1.000 2 ==> 1
+ node_23 --> H003 4 1 1.000 2 ==> 1
+ node_23 --> H005 12 1 0.333 2 ==> 1
+ node_25 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 87:
+
+Branch lengths and linkages for tree #87
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 24 root 0 0 0
+ 23 24 0 0 0
+ 21 23 2 2 3
+ 20 21 3 3 4
+ 19 20 2 1 3
+ 18 19 1 1 1
+ 15 18 0 0 1
+H002 (1) 15 0 0 0
+H009 (12) 15 1 1 1
+ 17 18 2 2 3
+ 16 17 0 0 1
+H007 (3) 16 2 1 2
+H011 (14) 16 0 0 1
+H012 (11) 17 2 0 2
+H006 (13) 18 1 0 1
+H008 (4) 19 1 0 1
+H014 (5) 20 0 0 0
+H001 (7) 21 0 0 0
+H013 (6) 23 2 2 2
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (10) 22 1 1 1
+H000 (9) 23 0 0 1
+H010 (2) 24 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7727
+Rescaled consistency index (RC) = 0.4368
+
+ /-------- H002
+ /--------------15
+ | \-------- H009
+ |
+ | /-------- H007
+ | /------16
+ /------18 | \-------- H011
+ | +------17
+ | | \---------------- H012
+ /-------19 |
+ | | \------------------------ H006
+ | |
+ /------20 \-------------------------------- H008
+ | |
+ /------21 \----------------------------------------- H014
+ | |
+ | \------------------------------------------------- H001
+ |
+ +--------------------------------------------------------- H013
+ /------23
+ | | /-------- H003
+ | +-----------------------------------------------22
+ | | \-------- H005
+-------24 |
+ | \--------------------------------------------------------- H000
+ |
+ \----------------------------------------------------------------- H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_21 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_21 --> node_20 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_20 --> node_19 10 1 1.000 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_19 --> node_18 9 1 1.000 2 ==> 1
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_18 --> node_17 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_17 --> H012 11 1 0.333 2 --> 1
+ 13 1 0.333 1 --> 0
+ node_18 --> H006 11 1 0.333 2 --> 1
+ node_19 --> H008 11 1 0.333 2 --> 1
+ node_23 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+ node_24 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 88:
+
+Branch lengths and linkages for tree #88
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 25 root 0 0 0
+ 24 25 0 0 0
+ 22 24 0 0 3
+ 21 22 2 2 3
+ 20 21 3 1 4
+ 19 20 2 1 3
+ 18 19 1 1 1
+ 15 18 0 0 1
+H002 (1) 15 0 0 0
+H009 (12) 15 1 1 1
+ 17 18 2 2 3
+ 16 17 0 0 1
+H007 (3) 16 2 1 2
+H011 (14) 16 0 0 1
+H012 (11) 17 2 0 2
+H006 (13) 18 1 0 1
+H008 (4) 19 1 0 1
+H014 (5) 20 0 0 0
+H001 (7) 21 0 0 2
+H013 (6) 22 2 0 2
+ 23 24 1 1 1
+H003 (8) 23 1 1 1
+H005 (10) 23 1 1 1
+H000 (9) 24 0 0 1
+H010 (2) 25 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7727
+Rescaled consistency index (RC) = 0.4368
+
+ /------- H002
+ /-------------15
+ | \------- H009
+ |
+ | /------- H007
+ | /------16
+ /-----18 | \------- H011
+ | +-----17
+ | | \--------------- H012
+ /-----19 |
+ | | \---------------------- H006
+ | |
+ /------20 \----------------------------- H008
+ | |
+ /-----21 \------------------------------------ H014
+ | |
+ /-----22 \-------------------------------------------- H001
+ | |
+ | \--------------------------------------------------- H013
+ |
+ /------24 /------- H003
+ | +-------------------------------------------------23
+ | | \------- H005
+------25 |
+ | \---------------------------------------------------------- H000
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_21 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_21 --> node_20 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_20 --> node_19 10 1 1.000 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_19 --> node_18 9 1 1.000 2 ==> 1
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_18 --> node_17 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_17 --> H012 11 1 0.333 2 --> 1
+ 13 1 0.333 1 --> 0
+ node_18 --> H006 11 1 0.333 2 --> 1
+ node_19 --> H008 11 1 0.333 2 --> 1
+ node_22 --> H013 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ node_24 --> node_23 3 1 1.000 2 ==> 1
+ node_23 --> H003 4 1 1.000 2 ==> 1
+ node_23 --> H005 12 1 0.333 2 ==> 1
+ node_25 --> H010 5 1 1.000 2 ==> 1
+
+Tree number 89:
+
+Branch lengths and linkages for tree #89
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 24 root 0 0 0
+ 23 24 0 0 0
+ 21 23 2 2 3
+ 20 21 3 3 4
+ 19 20 2 1 2
+ 18 19 1 1 1
+H002 (1) 18 0 0 0
+ 17 18 0 0 1
+ 16 17 2 2 3
+ 15 16 0 0 1
+H007 (3) 15 2 1 2
+H011 (14) 15 0 0 1
+H012 (11) 16 2 0 2
+H006 (13) 17 1 0 1
+H009 (12) 18 1 1 1
+H008 (4) 19 1 1 1
+H014 (5) 20 0 0 0
+H001 (7) 21 0 0 0
+H013 (6) 23 2 2 2
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (10) 22 1 1 1
+H000 (9) 23 0 0 1
+H010 (2) 24 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7727
+Rescaled consistency index (RC) = 0.4368
+
+ /----------------------------- H002
+ |
+ | /------- H007
+ | /------15
+ | | \------- H011
+ /-----18 /-----16
+ | | | \--------------- H012
+ | +-----17
+ | | \---------------------- H006
+ /------19 |
+ | | \----------------------------- H009
+ | |
+ /-----20 \------------------------------------ H008
+ | |
+ /-----21 \-------------------------------------------- H014
+ | |
+ | \--------------------------------------------------- H001
+ |
+ +---------------------------------------------------------- H013
+ /------23
+ | | /------- H003
+ | +-------------------------------------------------22
+ | | \------- H005
+------24 |
+ | \---------------------------------------------------------- H000
+ |
+ \------------------------------------------------------------------ H010
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_21 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_21 --> node_20 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_20 --> node_19 10 1 1.000 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_19 --> node_18 9 1 1.000 2 ==> 1
+ node_17 --> node_16 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_16 --> H012 11 1 0.333 2 --> 1
+ 13 1 0.333 1 --> 0
+ node_17 --> H006 11 1 0.333 2 --> 1
+ node_18 --> H009 12 1 0.333 2 ==> 1
+ node_19 --> H008 11 1 0.333 2 ==> 1
+ node_23 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+ node_24 --> H010 5 1 1.000 2 ==> 1
diff --git a/trunk/test/paup/ancestor_present/localisation/test.tree b/trunk/test/paup/ancestor_present/localisation/test.tree
new file mode 100644
index 0000000000000000000000000000000000000000..ef4e2c44078d3c014448afff87806a64984d7ee4
--- /dev/null
+++ b/trunk/test/paup/ancestor_present/localisation/test.tree
@@ -0,0 +1,121 @@
+#NEXUS
+
+Begin trees; [Treefile saved Thu Jan 12 21:57:28 2006]
+[!
+>Data file = /home/cbardel/recherche/logiciel/altree/test/paup/ancestor_present/localisation/et_caco.paup
+>Heuristic search settings:
+> Optimality criterion = parsimony
+> Character-status summary:
+> 1 character is excluded
+> Of the remaining 12 included characters:
+> All characters are of type 'unord'
+> All characters have equal weight
+> 2 characters are parsimony-uninformative
+> Number of (included) parsimony-informative characters = 10
+> Starting tree(s) obtained via stepwise addition
+> Addition sequence: simple (reference taxon = H002)
+> Number of trees held at each step during stepwise addition = 1
+> Branch-swapping algorithm: tree-bisection-reconnection (TBR)
+> Steepest descent option not in effect
+> 'MaxTrees' setting = 2000 (will not be increased)
+> Branches collapsed (creating polytomies) if maximum branch length is zero
+> 'MulTrees' option in effect
+> Topological constraints not enforced
+> Trees are unrooted
+>
+>Heuristic search completed
+> Total number of rearrangements tried = 90130
+> Score of best tree(s) found = 20
+> Number of trees retained = 89
+> Time used = <1 sec (CPU time = 0.11 sec)
+]
+tree PAUP_1 = [&R] (((((H002,(H007,H012,H011),(H008,H006),H009),H014),H013),H001,(H003,H005),H000),H010);
+tree PAUP_2 = [&R] ((((((H002,(H008,H006),H009),(H007,H012,H011)),H014),H013),H001,(H003,H005),H000),H010);
+tree PAUP_3 = [&R] ((((((H002,(H007,H012,H011),(H008,H006),H009),H014),H013),H001),(H003,H005),H000),H010);
+tree PAUP_4 = [&R] (((((H002,((H007,(H012,H011)),H009),(H008,H006)),H014),H013),H001,(H003,H005),H000),H010);
+tree PAUP_5 = [&R] ((((((H002,(H008,H006),H009),H014),(H007,H012,H011)),H013),H001,(H003,H005),H000),H010);
+tree PAUP_6 = [&R] (((((H002,(((H007,H011),H012),(H008,H006)),H009),H014),H013),H001,(H003,H005),H000),H010);
+tree PAUP_7 = [&R] (((((H002,(((H007,H011),H012),H008,H006),H009),H014),H013),H001,(H003,H005),H000),H010);
+tree PAUP_8 = [&R] ((((((H002,((H007,(H012,H011)),H009)),(H008,H006)),H014),H013),H001,(H003,H005),H000),H010);
+tree PAUP_9 = [&R] ((((((((H002,(H008,H006)),H009),H007),H012,H011),H014),H013),H001,(H003,H005),H000),H010);
+tree PAUP_10 = [&R] ((((((H002,(H008,H006),H009),H007,H012,H011),H014),H013),H001,(H003,H005),H000),H010);
+tree PAUP_11 = [&R] (((((((H002,((H007,(H012,H011)),H009)),H006),H008),H014),H013),H001,(H003,H005),H000),H010);
+tree PAUP_12 = [&R] (((((H002,(H008,H006),H014,H009),H007,H012,H011),H013),H001,(H003,H005),H000),H010);
+tree PAUP_13 = [&R] (((((H002,(H007,H012,H011),(H008,H006),H009),H014),H001),H013,(H003,H005),H000),H010);
+tree PAUP_14 = [&R] ((((((H002,(H007,H012,H011),(H008,H006),H009),H014),H001),H013),(H003,H005),H000),H010);
+tree PAUP_15 = [&R] ((((((H002,(H007,H012,H011),H009),(H008,H006)),H014),H013),H001,(H003,H005),H000),H010);
+tree PAUP_16 = [&R] ((((((H002,(H007,H012,H011),H009,H006),H008),H014),H013),H001,(H003,H005),H000),H010);
+tree PAUP_17 = [&R] (((((((H002,(H008,H006),H009),(H007,H012,H011)),H014),H013),H001),(H003,H005),H000),H010);
+tree PAUP_18 = [&R] (((((((H002,(H007,H012,H011),H009),(H008,H006)),H014),H013),H001),(H003,H005),H000),H010);
+tree PAUP_19 = [&R] ((((((((H002,(H007,H012,H011),H009),H006),H008),H014),H013),H001),(H003,H005),H000),H010);
+tree PAUP_20 = [&R] ((((((H002,(((H007,H011),H012),(H008,H006)),H009),H014),H013),H001),(H003,H005),H000),H010);
+tree PAUP_21 = [&R] ((((((H002,(((H007,H011),H012),H008,H006),H009),H014),H013),H001),(H003,H005),H000),H010);
+tree PAUP_22 = [&R] ((((((H002,((H007,(H012,H011)),H009),(H008,H006)),H014),H013),H001),(H003,H005),H000),H010);
+tree PAUP_23 = [&R] ((((((((H002,H009),(H008,H006)),H012),H007,H011),H014),H013),H001,(H003,H005),H000),H010);
+tree PAUP_24 = [&R] (((((((H002,H009),(H008,H006)),H014),(H007,H012,H011)),H013),H001,(H003,H005),H000),H010);
+tree PAUP_25 = [&R] ((((((((H002,H009),H008,H006),H012),H007,H011),H014),H013),H001,(H003,H005),H000),H010);
+tree PAUP_26 = [&R] ((((((((H002,H009),H006),H008),H014),(H007,H012,H011)),H013),H001,(H003,H005),H000),H010);
+tree PAUP_27 = [&R] (((((H002,((H008,H006),H014),H009),H007,H012,H011),H013),H001,(H003,H005),H000),H010);
+tree PAUP_28 = [&R] (((((H002,((H008,H014),H006),H009),H007,H012,H011),H013),H001,(H003,H005),H000),H010);
+tree PAUP_29 = [&R] (((((((H002,(H007,H012,H011),H009,H006),H008),H014),H013),H001),(H003,H005),H000),H010);
+tree PAUP_30 = [&R] ((((((H002,H009),(H008,H006),H014),(H007,H012,H011)),H013),H001,(H003,H005),H000),H010);
+tree PAUP_31 = [&R] (((((((H002,((H007,(H012,H011)),H009)),(H008,H006)),H014),H013),H001),(H003,H005),H000),H010);
+tree PAUP_32 = [&R] (((((((H002,H009),((((H007,H011),H012),H006),H008)),H014),H013),H001),(H003,H005),H000),H010);
+tree PAUP_33 = [&R] ((((((H002,((H007,(H012,H011)),H009),H006),H008),H014),H013),H001,(H003,H005),H000),H010);
+tree PAUP_34 = [&R] (((((H002,((H007,(H012,H011)),H009),(H008,H006)),H014),H001),H013,(H003,H005),H000),H010);
+tree PAUP_35 = [&R] (((((((H002,(H008,H006),H014),H009),H007),H012,H011),H013),H001,(H003,H005),H000),H010);
+tree PAUP_36 = [&R] ((((((H002,((H007,(H012,H011)),H009),(H008,H006)),H014),H001),H013),(H003,H005),H000),H010);
+tree PAUP_37 = [&R] (((((((H002,H014,H009),(H008,H006)),H012),H007,H011),H013),H001,(H003,H005),H000),H010);
+tree PAUP_38 = [&R] ((((((H002,H009),((H008,H006),H014)),(H007,H012,H011)),H013),H001,(H003,H005),H000),H010);
+tree PAUP_39 = [&R] (((((((H002,H009,H006),H008),H014),(H007,H012,H011)),H013),H001,(H003,H005),H000),H010);
+tree PAUP_40 = [&R] ((((((H002,H009,H006),(H008,H014)),(H007,H012,H011)),H013),H001,(H003,H005),H000),H010);
+tree PAUP_41 = [&R] ((((((H002,H009,H006),H008,H014),(H007,H012,H011)),H013),H001,(H003,H005),H000),H010);
+tree PAUP_42 = [&R] (((((((H002,H014,H009),H008,H006),H012),H007,H011),H013),H001,(H003,H005),H000),H010);
+tree PAUP_43 = [&R] ((((((((H002,H009),((H007,H011),H012)),H006),H008),H014),H013),H001,(H003,H005),H000),H010);
+tree PAUP_44 = [&R] ((((((H002,H009),((((H007,H011),H012),H006),H008)),H014),H013),H001,(H003,H005),H000),H010);
+tree PAUP_45 = [&R] (((((((H002,H009),(((H007,H011),H012),H006)),H008),H014),H013),H001,(H003,H005),H000),H010);
+tree PAUP_46 = [&R] (((((H002,(((H007,H011),H012),(H008,H006)),H009),H014),H001),H013,(H003,H005),H000),H010);
+tree PAUP_47 = [&R] ((((((H002,(((H007,H011),H012),(H008,H006)),H009),H014),H001),H013),(H003,H005),H000),H010);
+tree PAUP_48 = [&R] (((((((H002,(H007,H012,H011),H009),H006),H008),H014),H013),H001,(H003,H005),H000),H010);
+tree PAUP_49 = [&R] ((((((H002,((H007,(H012,H011)),H009)),(H008,H006)),H014),H001),H013,(H003,H005),H000),H010);
+tree PAUP_50 = [&R] (((((((H002,((H008,H006),H014)),H009),H007),H012,H011),H013),H001,(H003,H005),H000),H010);
+tree PAUP_51 = [&R] (((((((H002,((H007,(H012,H011)),H009)),(H008,H006)),H014),H001),H013),(H003,H005),H000),H010);
+tree PAUP_52 = [&R] (((((((H002,((H008,H014),H006)),H009),H007),H012,H011),H013),H001,(H003,H005),H000),H010);
+tree PAUP_53 = [&R] (((((((H002,((H007,(H012,H011)),H009)),H006),H008),H014),H001),H013,(H003,H005),H000),H010);
+tree PAUP_54 = [&R] (((((((H002,H009),((H007,H011),H012),H006),H008),H014),H013),H001,(H003,H005),H000),H010);
+tree PAUP_55 = [&R] ((((((((H002,((H007,(H012,H011)),H009)),H006),H008),H014),H013),H001),(H003,H005),H000),H010);
+tree PAUP_56 = [&R] ((((((((H002,((H007,(H012,H011)),H009)),H006),H008),H014),H001),H013),(H003,H005),H000),H010);
+tree PAUP_57 = [&R] (((((((((H002,H009),H014),H008),H006),H012),H007,H011),H013),H001,(H003,H005),H000),H010);
+tree PAUP_58 = [&R] (((((H002,(H008,H014),H009,H006),H007,H012,H011),H013),H001,(H003,H005),H000),H010);
+tree PAUP_59 = [&R] ((((((H002,(H007,H012,H011),H009),(H008,H006)),H014),H001),H013,(H003,H005),H000),H010);
+tree PAUP_60 = [&R] ((((((H002,((H007,(H012,H011)),H009),H006),H008),H014),H001),H013,(H003,H005),H000),H010);
+tree PAUP_61 = [&R] (((((H002,(((H007,H011),H012),H008,H006),H009),H014),H001),H013,(H003,H005),H000),H010);
+tree PAUP_62 = [&R] ((((((H002,(((H007,H011),H012),H008,H006),H009),H014),H001),H013),(H003,H005),H000),H010);
+tree PAUP_63 = [&R] (((((((H002,(H007,H012,H011),H009),(H008,H006)),H014),H001),H013),(H003,H005),H000),H010);
+tree PAUP_64 = [&R] (((((((H002,(H007,H012,H011),H009,H006),H008),H014),H001),H013),(H003,H005),H000),H010);
+tree PAUP_65 = [&R] ((((((H002,(H007,H012,H011),H009,H006),H008),H014),H001),H013,(H003,H005),H000),H010);
+tree PAUP_66 = [&R] ((((((H002,(((H007,H011),H012),H006),H009),H008),H014),H013),H001,(H003,H005),H000),H010);
+tree PAUP_67 = [&R] (((((((((H002,H009),((H007,H011),H012)),H006),H008),H014),H013),H001),(H003,H005),H000),H010);
+tree PAUP_68 = [&R] (((((((H002,(((H007,H011),H012),H006),H009),H008),H014),H013),H001),(H003,H005),H000),H010);
+tree PAUP_69 = [&R] (((((((H002,(H007,H012,H011),H009),H006),H008),H014),H001),H013,(H003,H005),H000),H010);
+tree PAUP_70 = [&R] ((((((((H002,(H007,H012,H011),H009),H006),H008),H014),H001),H013),(H003,H005),H000),H010);
+tree PAUP_71 = [&R] ((((((((H002,H009),(((H007,H011),H012),H006)),H008),H014),H013),H001),(H003,H005),H000),H010);
+tree PAUP_72 = [&R] ((((((((H002,H009),((H007,H011),H012),H006),H008),H014),H013),H001),(H003,H005),H000),H010);
+tree PAUP_73 = [&R] (((((((H002,((H007,(H012,H011)),H009),H006),H008),H014),H013),H001),(H003,H005),H000),H010);
+tree PAUP_74 = [&R] (((((((H002,H009),((H008,H014),H006)),H012),H007,H011),H013),H001,(H003,H005),H000),H010);
+tree PAUP_75 = [&R] ((((((((H002,H009),(H008,H014)),H006),H012),H007,H011),H013),H001,(H003,H005),H000),H010);
+tree PAUP_76 = [&R] (((((((H002,H009),(H008,H014),H006),H012),H007,H011),H013),H001,(H003,H005),H000),H010);
+tree PAUP_77 = [&R] ((((((H002,H009),((((H007,H011),H012),H006),H008)),H014),H001),H013,(H003,H005),H000),H010);
+tree PAUP_78 = [&R] (((((((H002,H009),((((H007,H011),H012),H006),H008)),H014),H001),H013),(H003,H005),H000),H010);
+tree PAUP_79 = [&R] (((((((H002,((H007,(H012,H011)),H009),H006),H008),H014),H001),H013),(H003,H005),H000),H010);
+tree PAUP_80 = [&R] (((((((H002,(H008,H014),H006),H009),H007),H012,H011),H013),H001,(H003,H005),H000),H010);
+tree PAUP_81 = [&R] (((((((H002,(H008,H014),H009),H006),H012),H007,H011),H013),H001,(H003,H005),H000),H010);
+tree PAUP_82 = [&R] ((((((((H002,H009),((H007,H011),H012)),H006),H008),H014),H001),H013,(H003,H005),H000),H010);
+tree PAUP_83 = [&R] (((((((((H002,H009),((H007,H011),H012)),H006),H008),H014),H001),H013),(H003,H005),H000),H010);
+tree PAUP_84 = [&R] (((((((H002,H009),(((H007,H011),H012),H006)),H008),H014),H001),H013,(H003,H005),H000),H010);
+tree PAUP_85 = [&R] ((((((((H002,H009),(((H007,H011),H012),H006)),H008),H014),H001),H013),(H003,H005),H000),H010);
+tree PAUP_86 = [&R] (((((((H002,(((H007,H011),H012),H006),H009),H008),H014),H001),H013),(H003,H005),H000),H010);
+tree PAUP_87 = [&R] (((((((H002,H009),((H007,H011),H012),H006),H008),H014),H001),H013,(H003,H005),H000),H010);
+tree PAUP_88 = [&R] ((((((((H002,H009),((H007,H011),H012),H006),H008),H014),H001),H013),(H003,H005),H000),H010);
+tree PAUP_89 = [&R] ((((((H002,(((H007,H011),H012),H006),H009),H008),H014),H001),H013,(H003,H005),H000),H010);
+End;
diff --git a/trunk/test/paup/outgr_absent/association/1_caco.asso b/trunk/test/paup/outgr_absent/association/1_caco.asso
new file mode 100644
index 0000000000000000000000000000000000000000..22f58e53683ee425c45cad9950a4ebdfe6213117
--- /dev/null
+++ b/trunk/test/paup/outgr_absent/association/1_caco.asso
@@ -0,0 +1,57 @@
+
+ /----* H002 case/control:8/6
+ | /----* H007 case/control:7/13
+ | | Site: 12 Sens: 2-->1
+ | |----* H012 case/control:1/4
+ | | Site: 11 Sens: 2-->1
+ |----* 15 case/control:13/18
+ | | Site: 1 Sens: 1-->2
+ | | Site: 2 Sens: 1-->2
+ | \----* H011 case/control:5/1
+ /----* 17 case/control:66/41
+ | | Site: 10 Sens: 2-->1
+ | | Site: 9 Sens: 2-->1
+ | | /----* H008 case/control:9/2
+ | | | Site: 9 Sens: 1-->2
+ | |----* 16 case/control:37/15
+ | | | Site: 11 Sens: 2-->1
+ | | \----* H006 case/control:28/13
+ | \----* H009 case/control:8/2
+ | Site: 12 Sens: 2-->1
+ /----* 18 case/control:70/43
+ | | Site: 8 Sens: 2-->1
+ | | Site: 1 Sens: 2-->1
+ | | Site: 2 Sens: 2-->1
+ | \----* H014 case/control:4/2
+ /----* 19 case/control:72/47
+ | | Site: 6 Sens: 2-->1
+ | | Site: 7 Sens: 2-->1
+ | \----* H013 case/control:2/4
+ |----* H010 case/control:7/5
+ | Site: 5 Sens: 2-->1
+-----* 21 case/control:102/74
+ |
+ | [0] ddl=3 chi2=1.41 p_value_chi2=0.704
+ | [1] ddl=5 chi2=3.37 p_value_chi2=0.641
+ | [2] ddl=6 chi2=3.43 p_value_chi2=0.778
+ | [3] ddl=9 chi2=11.80 p_value_chi2=0.217
+ | [4] ddl=12 chi2=18.05 p_value_chi2=0.109
+ |----* H001 case/control:11/9
+ | Site: 1 Sens: 2-->1
+ | Site: 2 Sens: 2-->1
+ | /----* H003 case/control:5/6
+ | | Site: 4 Sens: 2-->1
+ \----* 20 case/control:12/13
+ | Site: 3 Sens: 2-->1
+ \----* H005 case/control:7/7
+ Site: 12 Sens: 2-->1
+
+ Number of permutation: 1
+
+p_val for each level:
+level 1 p-value (non corrected) 0
+level 2 p-value (non corrected) 0.5
+level 3 p-value (non corrected) 0.5
+level 4 p-value (non corrected) 0.5
+level 5 p-value (non corrected) 0
+corrected minimal p_value in the tree: 0.5
diff --git a/trunk/test/paup/outgr_absent/association/caco.paup b/trunk/test/paup/outgr_absent/association/caco.paup
new file mode 100644
index 0000000000000000000000000000000000000000..b0588947ac703ddf45a500aec7cd3cd890163899
--- /dev/null
+++ b/trunk/test/paup/outgr_absent/association/caco.paup
@@ -0,0 +1,39 @@
+#Nexus
+Begin data;
+dimension ntax=14 nchar=12;
+format symbols="0123456789" missing=?;
+matrix
+H002 112221111122
+H010 222212222222
+H007 222221111121
+H008 112221112112
+H014 112221112222
+H013 222221122222
+H001 112222222222
+H003 221122222222
+H000 222222222222
+H005 221222222221
+H012 222221111112
+H009 112221111121
+H006 112221111112
+H011 222221111122
+;
+end;
+begin assumptions;
+[ancstates *anc vector = 2222222222221;]
+end;
+begin paup;
+set nowarnreset autoclose maxtrees = 2000 increase= no [- Auto AutoInc = 100] monitor = no taxlabels = full
+root=outgroup warnroot=no opt=deltran [- acctran];
+outgroup H000;
+hsearch;
+savetrees from=1 to=1000 file= test.tree root=yes format=altnexus;
+cleartrees nowarn=yes;
+gettrees rooted=yes file=test.tree;
+log file = test.res.log replace= yes [- no];
+describetrees all /plot=cladogram [- phylogram] brlens=yes
+rootmethod=outgroup apolist=yes;
+log stop;
+end;
+quit;
+[WARNING, this file is designed for bi-allelic data. If it is not the case, you may have to modify this input file, for example by specifying the ordered option in the typeset command in the assumption block]
diff --git a/trunk/test/paup/outgr_absent/association/nb_cas_control.txt b/trunk/test/paup/outgr_absent/association/nb_cas_control.txt
new file mode 100644
index 0000000000000000000000000000000000000000..ec9b7d90b0f6fc3983260c38f77f3bd42b037c09
--- /dev/null
+++ b/trunk/test/paup/outgr_absent/association/nb_cas_control.txt
@@ -0,0 +1,13 @@
+H002 m008 c006
+H010 m007 c005
+H007 m007 c013
+H008 m009 c002
+H014 m004 c002
+H013 m002 c004
+H001 m011 c009
+H003 m005 c006
+H005 m007 c007
+H012 m001 c004
+H009 m008 c002
+H006 m028 c013
+H011 m005 c001
diff --git a/trunk/test/paup/outgr_absent/association/run_altree b/trunk/test/paup/outgr_absent/association/run_altree
new file mode 100755
index 0000000000000000000000000000000000000000..b78cbe5b76c68672a401ab1f805161c015b3250d
--- /dev/null
+++ b/trunk/test/paup/outgr_absent/association/run_altree
@@ -0,0 +1,11 @@
+#!/bin/sh -x
+
+# To run paup
+paup caco.paup
+
+# To perform the association test (on the first tree found in the file
+# test.res.log)
+# The outgroup is removed from the file before analysis
+# (option --remove-outgroup)
+../../../../altree -i test.res.log -j nb_cas_control.txt -a -t SNP \
+ --remove-outgroup -p paup -r 1 --tree-to-analyse 1 -o 1_caco.asso
diff --git a/trunk/test/paup/outgr_absent/association/test.res.log b/trunk/test/paup/outgr_absent/association/test.res.log
new file mode 100644
index 0000000000000000000000000000000000000000..4652e29b41fb13538dd8e8966683a4ff3c71db30
--- /dev/null
+++ b/trunk/test/paup/outgr_absent/association/test.res.log
@@ -0,0 +1,8475 @@
+
+P A U P *
+Portable version 4.0b10 for Unix
+Thu Jan 12 21:57:50 2006
+
+ -----------------------------NOTICE-----------------------------
+ This is a beta-test version. Please report any crashes,
+ apparent calculation errors, or other anomalous results.
+ There are no restrictions on publication of results obtained
+ with this version, but you should check the WWW site
+ frequently for bug announcements and/or updated versions.
+ See the README file on the distribution media for details.
+ ----------------------------------------------------------------
+
+Tree description:
+
+ Optimality criterion = parsimony
+ Character-status summary:
+ Of 12 total characters:
+ All characters are of type 'unord'
+ All characters have equal weight
+ 2 characters are parsimony-uninformative
+ Number of parsimony-informative characters = 10
+ Character-state optimization: Delayed transformation (DELTRAN)
+ AncStates = "standard"
+
+Tree number 1:
+
+Branch lengths and linkages for tree #1
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 21 root 0 0 0
+ 19 21 2 2 2
+ 18 19 3 3 3
+ 17 18 2 2 2
+H002 (1) 17 0 0 0
+ 15 17 2 2 2
+H007 (3) 15 1 1 1
+H012 (11) 15 1 1 1
+H011 (14) 15 0 0 0
+ 16 17 1 1 1
+H008 (4) 16 1 1 1
+H006 (13) 16 0 0 0
+H009 (12) 17 1 1 1
+H014 (5) 18 0 0 0
+H013 (6) 19 0 0 0
+H010 (2) 21 1 1 1
+H001 (7) 21 2 2 2
+ 20 21 1 1 1
+H003 (8) 20 1 1 1
+H005 (10) 20 1 1 1
+H000 (9)* 21 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /------------------------ H002
+ |
+ | /------------ H007
+ | |
+ +----------15------------ H012
+ | |
+ /----------17 \------------ H011
+ | |
+ | | /------------ H008
+ | +----------16
+ /-----------18 | \------------ H006
+ | | |
+ | | \------------------------ H009
+ /----------19 |
+ | | \------------------------------------ H014
+ | |
+ | \------------------------------------------------- H013
+ |
+ +------------------------------------------------------------- H010
+ |
+-----------21------------------------------------------------------------- H001
+ |
+ | /------------ H003
+ +-----------------------------------------------20
+ | \------------ H005
+ |
+ \------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_19 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_19 --> node_18 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_18 --> node_17 9 1 0.500 2 ==> 1
+ 10 1 1.000 2 ==> 1
+ node_17 --> node_15 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ node_15 --> H012 11 1 0.500 2 ==> 1
+ node_17 --> node_16 11 1 0.500 2 ==> 1
+ node_16 --> H008 9 1 0.500 1 ==> 2
+ node_17 --> H009 12 1 0.333 2 ==> 1
+ node_21 --> H010 5 1 1.000 2 ==> 1
+ node_21 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_21 --> node_20 3 1 1.000 2 ==> 1
+ node_20 --> H003 4 1 1.000 2 ==> 1
+ node_20 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 2:
+
+Branch lengths and linkages for tree #2
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 22 root 0 0 0
+ 20 22 2 2 2
+ 19 20 1 1 3
+ 18 19 2 2 2
+ 16 18 2 0 2
+H002 (1) 16 0 0 0
+ 15 16 1 1 1
+H008 (4) 15 1 1 1
+H006 (13) 15 0 0 0
+H009 (12) 16 1 1 1
+ 17 18 0 0 2
+H007 (3) 17 1 1 1
+H012 (11) 17 1 1 1
+H011 (14) 17 0 0 0
+H014 (5) 19 2 0 2
+H013 (6) 20 0 0 0
+H010 (2) 22 1 1 1
+H001 (7) 22 2 2 2
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (10) 21 1 1 1
+H000 (9)* 22 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /--------------------- H002
+ |
+ | /---------- H008
+ /--------16---------15
+ | | \---------- H006
+ | |
+ | \--------------------- H009
+ /---------18
+ | | /---------- H007
+ | | |
+ | \-------------------17---------- H012
+ /--------19 |
+ | | \---------- H011
+ | |
+ /---------20 \------------------------------------------ H014
+ | |
+ | \---------------------------------------------------- H013
+ |
+ +--------------------------------------------------------------- H010
+ |
+---------22--------------------------------------------------------------- H001
+ |
+ | /---------- H003
+ +---------------------------------------------------21
+ | \---------- H005
+ |
+ \--------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_20 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_20 --> node_19 8 1 1.000 2 ==> 1
+ node_19 --> node_18 9 1 0.500 2 ==> 1
+ 10 1 1.000 2 ==> 1
+ node_18 --> node_16 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ node_16 --> node_15 11 1 0.500 2 ==> 1
+ node_15 --> H008 9 1 0.500 1 ==> 2
+ node_16 --> H009 12 1 0.333 2 ==> 1
+ node_17 --> H007 12 1 0.333 2 ==> 1
+ node_17 --> H012 11 1 0.500 2 ==> 1
+ node_19 --> H014 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ node_22 --> H010 5 1 1.000 2 ==> 1
+ node_22 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 3:
+
+Branch lengths and linkages for tree #3
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 22 root 0 0 0
+ 20 22 0 0 2
+ 19 20 2 2 2
+ 18 19 3 1 3
+ 17 18 2 2 2
+H002 (1) 17 0 0 0
+ 15 17 2 2 2
+H007 (3) 15 1 1 1
+H012 (11) 15 1 1 1
+H011 (14) 15 0 0 0
+ 16 17 1 1 1
+H008 (4) 16 1 1 1
+H006 (13) 16 0 0 0
+H009 (12) 17 1 1 1
+H014 (5) 18 0 0 0
+H013 (6) 19 0 0 2
+H001 (7) 20 2 0 2
+H010 (2) 22 1 1 1
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (10) 21 1 1 1
+H000 (9)* 22 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /--------------------- H002
+ |
+ | /---------- H007
+ | |
+ +---------15---------- H012
+ | |
+ /--------17 \---------- H011
+ | |
+ | | /---------- H008
+ | +---------16
+ /---------18 | \---------- H006
+ | | |
+ | | \--------------------- H009
+ /--------19 |
+ | | \------------------------------- H014
+ | |
+ /---------20 \------------------------------------------ H013
+ | |
+ | \---------------------------------------------------- H001
+ |
+ +--------------------------------------------------------------- H010
+---------22
+ | /---------- H003
+ +---------------------------------------------------21
+ | \---------- H005
+ |
+ \--------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_20 --> node_19 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_19 --> node_18 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_18 --> node_17 9 1 0.500 2 ==> 1
+ 10 1 1.000 2 ==> 1
+ node_17 --> node_15 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ node_15 --> H012 11 1 0.500 2 ==> 1
+ node_17 --> node_16 11 1 0.500 2 ==> 1
+ node_16 --> H008 9 1 0.500 1 ==> 2
+ node_17 --> H009 12 1 0.333 2 ==> 1
+ node_20 --> H001 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ node_22 --> H010 5 1 1.000 2 ==> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 4:
+
+Branch lengths and linkages for tree #4
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 21 23 2 2 2
+ 20 21 3 3 3
+ 19 20 2 2 2
+H002 (1) 19 0 0 0
+ 17 19 0 0 1
+ 16 17 2 2 2
+H007 (3) 16 1 0 1
+ 15 16 0 0 1
+H012 (11) 15 1 1 1
+H011 (14) 15 0 0 0
+H009 (12) 17 1 0 1
+ 18 19 1 1 1
+H008 (4) 18 1 1 1
+H006 (13) 18 0 0 0
+H014 (5) 20 0 0 0
+H013 (6) 21 0 0 0
+H010 (2) 23 1 1 1
+H001 (7) 23 2 2 2
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (10) 22 1 1 1
+H000 (9)* 23 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /------------------------------------- H002
+ |
+ | /------------------ H007
+ | |
+ | /-------16 /--------- H012
+ | | \-------15
+ /-------19--------17 \--------- H011
+ | | |
+ | | \--------------------------- H009
+ | |
+ /-------20 | /--------- H008
+ | | \--------------------------18
+ | | \--------- H006
+ /-------21 |
+ | | \---------------------------------------------- H014
+ | |
+ | \------------------------------------------------------- H013
+ |
+ +---------------------------------------------------------------- H010
+ |
+--------23---------------------------------------------------------------- H001
+ |
+ | /--------- H003
+ +-----------------------------------------------------22
+ | \--------- H005
+ |
+ \---------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_21 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_21 --> node_20 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_20 --> node_19 9 1 0.500 2 ==> 1
+ 10 1 1.000 2 ==> 1
+ node_17 --> node_16 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 --> 1
+ node_15 --> H012 11 1 0.500 2 ==> 1
+ node_17 --> H009 12 1 0.333 2 --> 1
+ node_19 --> node_18 11 1 0.500 2 ==> 1
+ node_18 --> H008 9 1 0.500 1 ==> 2
+ node_23 --> H010 5 1 1.000 2 ==> 1
+ node_23 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 5:
+
+Branch lengths and linkages for tree #5
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 22 root 0 0 0
+ 20 22 2 2 2
+ 19 20 1 1 3
+ 17 19 2 2 2
+ 16 17 2 0 2
+H002 (1) 16 0 0 0
+ 15 16 1 1 1
+H008 (4) 15 1 1 1
+H006 (13) 15 0 0 0
+H009 (12) 16 1 1 1
+H014 (5) 17 0 0 2
+ 18 19 2 0 2
+H007 (3) 18 1 1 1
+H012 (11) 18 1 1 1
+H011 (14) 18 0 0 0
+H013 (6) 20 0 0 0
+H010 (2) 22 1 1 1
+H001 (7) 22 2 2 2
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (10) 21 1 1 1
+H000 (9)* 22 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /--------------------- H002
+ |
+ | /---------- H008
+ /--------16---------15
+ | | \---------- H006
+ | |
+ /---------17 \--------------------- H009
+ | |
+ | \------------------------------- H014
+ /--------19
+ | | /---------- H007
+ | | |
+ | \------------------------------18---------- H012
+ /---------20 |
+ | | \---------- H011
+ | |
+ | \---------------------------------------------------- H013
+ |
+ +--------------------------------------------------------------- H010
+ |
+---------22--------------------------------------------------------------- H001
+ |
+ | /---------- H003
+ +---------------------------------------------------21
+ | \---------- H005
+ |
+ \--------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_20 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_20 --> node_19 8 1 1.000 2 ==> 1
+ node_19 --> node_17 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_17 --> node_16 9 1 0.333 2 --> 1
+ 10 1 0.500 2 --> 1
+ node_16 --> node_15 11 1 0.500 2 ==> 1
+ node_15 --> H008 9 1 0.333 1 ==> 2
+ node_16 --> H009 12 1 0.333 2 ==> 1
+ node_19 --> node_18 9 1 0.333 2 --> 1
+ 10 1 0.500 2 --> 1
+ node_18 --> H007 12 1 0.333 2 ==> 1
+ node_18 --> H012 11 1 0.500 2 ==> 1
+ node_22 --> H010 5 1 1.000 2 ==> 1
+ node_22 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 6:
+
+Branch lengths and linkages for tree #6
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 21 23 2 2 2
+ 20 21 3 3 3
+ 19 20 2 2 2
+H002 (1) 19 0 0 0
+ 18 19 0 0 1
+ 16 18 2 2 2
+ 15 16 0 0 1
+H007 (3) 15 1 1 1
+H011 (14) 15 0 0 0
+H012 (11) 16 1 0 1
+ 17 18 1 0 1
+H008 (4) 17 1 1 1
+H006 (13) 17 0 0 0
+H009 (12) 19 1 1 1
+H014 (5) 20 0 0 0
+H013 (6) 21 0 0 0
+H010 (2) 23 1 1 1
+H001 (7) 23 2 2 2
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (10) 22 1 1 1
+H000 (9)* 23 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /------------------------------------- H002
+ |
+ | /--------- H007
+ | /-------15
+ | | \--------- H011
+ | /-------16
+ /-------19 | \------------------ H012
+ | +--------18
+ | | | /--------- H008
+ | | \----------------17
+ /-------20 | \--------- H006
+ | | |
+ | | \------------------------------------- H009
+ /-------21 |
+ | | \---------------------------------------------- H014
+ | |
+ | \------------------------------------------------------- H013
+ |
+ +---------------------------------------------------------------- H010
+ |
+--------23---------------------------------------------------------------- H001
+ |
+ | /--------- H003
+ +-----------------------------------------------------22
+ | \--------- H005
+ |
+ \---------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_21 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_21 --> node_20 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_20 --> node_19 9 1 0.500 2 ==> 1
+ 10 1 1.000 2 ==> 1
+ node_18 --> node_16 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ node_16 --> H012 11 1 0.500 2 --> 1
+ node_18 --> node_17 11 1 0.500 2 --> 1
+ node_17 --> H008 9 1 0.500 1 ==> 2
+ node_19 --> H009 12 1 0.333 2 ==> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+ node_23 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 7:
+
+Branch lengths and linkages for tree #7
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 22 root 0 0 0
+ 20 22 2 2 2
+ 19 20 3 3 3
+ 18 19 2 2 2
+H002 (1) 18 0 0 0
+ 17 18 1 1 1
+ 16 17 2 2 2
+ 15 16 1 1 1
+H007 (3) 15 1 1 1
+H011 (14) 15 0 0 0
+H012 (11) 16 0 0 0
+H008 (4) 17 1 1 1
+H006 (13) 17 0 0 0
+H009 (12) 18 1 1 1
+H014 (5) 19 0 0 0
+H013 (6) 20 0 0 0
+H010 (2) 22 1 1 1
+H001 (7) 22 2 2 2
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (10) 21 1 1 1
+H000 (9)* 22 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /------------------------------------- H002
+ |
+ | /--------- H007
+ | /-------15
+ | | \--------- H011
+ | /-------16
+ /-------18 | \------------------ H012
+ | | |
+ | +--------17--------------------------- H008
+ | | |
+ /-------19 | \--------------------------- H006
+ | | |
+ | | \------------------------------------- H009
+ /-------20 |
+ | | \---------------------------------------------- H014
+ | |
+ | \------------------------------------------------------- H013
+ |
+ +---------------------------------------------------------------- H010
+ |
+--------22---------------------------------------------------------------- H001
+ |
+ | /--------- H003
+ +-----------------------------------------------------21
+ | \--------- H005
+ |
+ \---------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_20 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_20 --> node_19 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_19 --> node_18 9 1 0.500 2 ==> 1
+ 10 1 1.000 2 ==> 1
+ node_18 --> node_17 11 1 0.500 2 ==> 1
+ node_17 --> node_16 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_16 --> node_15 11 1 0.500 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ node_17 --> H008 9 1 0.500 1 ==> 2
+ node_18 --> H009 12 1 0.333 2 ==> 1
+ node_22 --> H010 5 1 1.000 2 ==> 1
+ node_22 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 8:
+
+Branch lengths and linkages for tree #8
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 24 root 0 0 0
+ 22 24 2 2 2
+ 21 22 3 3 3
+ 20 21 1 1 2
+ 18 20 1 0 1
+H002 (1) 18 0 0 0
+ 17 18 0 0 1
+ 16 17 2 2 2
+H007 (3) 16 1 0 1
+ 15 16 0 0 1
+H012 (11) 15 1 1 1
+H011 (14) 15 0 0 0
+H009 (12) 17 1 0 1
+ 19 20 1 1 1
+H008 (4) 19 0 0 1
+H006 (13) 19 1 0 1
+H014 (5) 21 0 0 0
+H013 (6) 22 0 0 0
+H010 (2) 24 1 1 1
+H001 (7) 24 2 2 2
+ 23 24 1 1 1
+H003 (8) 23 1 1 1
+H005 (10) 23 1 1 1
+H000 (9)* 24 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /-------------------------------- H002
+ |
+ | /---------------- H007
+ /-------18 |
+ | | /------16 /-------- H012
+ | | | \------15
+ | \------17 \-------- H011
+ /------20 |
+ | | \------------------------ H009
+ | |
+ | | /-------- H008
+ /------21 \-------------------------------19
+ | | \-------- H006
+ | |
+ /------22 \------------------------------------------------- H014
+ | |
+ | \--------------------------------------------------------- H013
+ |
+ +----------------------------------------------------------------- H010
+ |
+-------24----------------------------------------------------------------- H001
+ |
+ | /-------- H003
+ +-------------------------------------------------------23
+ | \-------- H005
+ |
+ \----------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_24 --> node_22 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_22 --> node_21 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_21 --> node_20 10 1 1.000 2 ==> 1
+ node_20 --> node_18 9 1 0.500 2 --> 1
+ node_17 --> node_16 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 --> 1
+ node_15 --> H012 11 1 0.500 2 ==> 1
+ node_17 --> H009 12 1 0.333 2 --> 1
+ node_20 --> node_19 11 1 0.500 2 ==> 1
+ node_19 --> H006 9 1 0.500 2 --> 1
+ node_24 --> H010 5 1 1.000 2 ==> 1
+ node_24 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_24 --> node_23 3 1 1.000 2 ==> 1
+ node_23 --> H003 4 1 1.000 2 ==> 1
+ node_23 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 9:
+
+Branch lengths and linkages for tree #9
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 21 23 2 2 2
+ 20 21 1 1 1
+ 19 20 2 2 2
+ 18 19 0 0 1
+ 17 18 2 2 2
+ 16 17 0 0 1
+H002 (1) 16 0 0 0
+ 15 16 1 1 1
+H008 (4) 15 1 1 1
+H006 (13) 15 0 0 0
+H009 (12) 17 1 0 1
+H007 (3) 18 1 0 1
+H012 (11) 19 1 1 1
+H011 (14) 19 0 0 0
+H014 (5) 20 2 2 2
+H013 (6) 21 0 0 0
+H010 (2) 23 1 1 1
+H001 (7) 23 2 2 2
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (10) 22 1 1 1
+H000 (9)* 23 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /---------------- H002
+ |
+ /------16 /-------- H008
+ | \------15
+ /------17 \-------- H006
+ | |
+ /-------18 \------------------------ H009
+ | |
+ | \-------------------------------- H007
+ /------19
+ | +----------------------------------------- H012
+ | |
+ /------20 \----------------------------------------- H011
+ | |
+ /------21 \------------------------------------------------- H014
+ | |
+ | \--------------------------------------------------------- H013
+ |
+ +----------------------------------------------------------------- H010
+ |
+-------23----------------------------------------------------------------- H001
+ |
+ | /-------- H003
+ +-------------------------------------------------------22
+ | \-------- H005
+ |
+ \----------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_21 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_21 --> node_20 8 1 1.000 2 ==> 1
+ node_20 --> node_19 9 1 0.500 2 ==> 1
+ 10 1 1.000 2 ==> 1
+ node_18 --> node_17 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_16 --> node_15 11 1 0.500 2 ==> 1
+ node_15 --> H008 9 1 0.500 1 ==> 2
+ node_17 --> H009 12 1 0.333 2 --> 1
+ node_18 --> H007 12 1 0.333 2 --> 1
+ node_19 --> H012 11 1 0.500 2 ==> 1
+ node_20 --> H014 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+ node_23 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 10:
+
+Branch lengths and linkages for tree #10
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 21 root 0 0 0
+ 19 21 2 2 2
+ 18 19 1 1 1
+ 17 18 2 2 2
+ 16 17 2 2 2
+H002 (1) 16 0 0 0
+ 15 16 1 1 1
+H008 (4) 15 1 1 1
+H006 (13) 15 0 0 0
+H009 (12) 16 1 1 1
+H007 (3) 17 1 1 1
+H012 (11) 17 1 1 1
+H011 (14) 17 0 0 0
+H014 (5) 18 2 2 2
+H013 (6) 19 0 0 0
+H010 (2) 21 1 1 1
+H001 (7) 21 2 2 2
+ 20 21 1 1 1
+H003 (8) 20 1 1 1
+H005 (10) 20 1 1 1
+H000 (9)* 21 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /--------------------- H002
+ |
+ | /---------- H008
+ /--------16---------15
+ | | \---------- H006
+ | |
+ | \--------------------- H009
+ |
+ /---------17------------------------------- H007
+ | |
+ | +------------------------------- H012
+ /--------18 |
+ | | \------------------------------- H011
+ | |
+ /---------19 \------------------------------------------ H014
+ | |
+ | \---------------------------------------------------- H013
+ |
+ +--------------------------------------------------------------- H010
+ |
+---------21--------------------------------------------------------------- H001
+ |
+ | /---------- H003
+ +---------------------------------------------------20
+ | \---------- H005
+ |
+ \--------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_19 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_19 --> node_18 8 1 1.000 2 ==> 1
+ node_18 --> node_17 9 1 0.500 2 ==> 1
+ 10 1 1.000 2 ==> 1
+ node_17 --> node_16 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_16 --> node_15 11 1 0.500 2 ==> 1
+ node_15 --> H008 9 1 0.500 1 ==> 2
+ node_16 --> H009 12 1 0.333 2 ==> 1
+ node_17 --> H007 12 1 0.333 2 ==> 1
+ node_17 --> H012 11 1 0.500 2 ==> 1
+ node_18 --> H014 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_21 --> H010 5 1 1.000 2 ==> 1
+ node_21 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_21 --> node_20 3 1 1.000 2 ==> 1
+ node_20 --> H003 4 1 1.000 2 ==> 1
+ node_20 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 11:
+
+Branch lengths and linkages for tree #11
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 24 root 0 0 0
+ 22 24 2 2 2
+ 21 22 3 3 3
+ 20 21 1 1 2
+ 19 20 1 1 1
+ 18 19 0 0 1
+H002 (1) 18 0 0 0
+ 17 18 0 0 1
+ 16 17 2 2 2
+H007 (3) 16 1 0 1
+ 15 16 0 0 1
+H012 (11) 15 1 1 1
+H011 (14) 15 0 0 0
+H009 (12) 17 1 0 1
+H006 (13) 19 1 0 1
+H008 (4) 20 1 0 1
+H014 (5) 21 0 0 0
+H013 (6) 22 0 0 0
+H010 (2) 24 1 1 1
+H001 (7) 24 2 2 2
+ 23 24 1 1 1
+H003 (8) 23 1 1 1
+H005 (10) 23 1 1 1
+H000 (9)* 24 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /----------------------------- H002
+ |
+ | /--------------- H007
+ /-----18 |
+ | | /-----16 /------- H012
+ | | | \------15
+ | \-----17 \------- H011
+ /------19 |
+ | | \---------------------- H009
+ | |
+ /-----20 \------------------------------------ H006
+ | |
+ /-----21 \-------------------------------------------- H008
+ | |
+ /------22 \--------------------------------------------------- H014
+ | |
+ | \---------------------------------------------------------- H013
+ |
+ +------------------------------------------------------------------ H010
+ |
+------24------------------------------------------------------------------ H001
+ |
+ | /------- H003
+ +---------------------------------------------------------23
+ | \------- H005
+ |
+ \------------------------------------------------------------------ H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_24 --> node_22 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_22 --> node_21 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_21 --> node_20 10 1 1.000 2 ==> 1
+ node_20 --> node_19 9 1 1.000 2 ==> 1
+ node_17 --> node_16 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 --> 1
+ node_15 --> H012 11 1 0.333 2 ==> 1
+ node_17 --> H009 12 1 0.333 2 --> 1
+ node_19 --> H006 11 1 0.333 2 --> 1
+ node_20 --> H008 11 1 0.333 2 --> 1
+ node_24 --> H010 5 1 1.000 2 ==> 1
+ node_24 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_24 --> node_23 3 1 1.000 2 ==> 1
+ node_23 --> H003 4 1 1.000 2 ==> 1
+ node_23 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 12:
+
+Branch lengths and linkages for tree #12
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 20 root 0 0 0
+ 18 20 2 2 2
+ 17 18 3 3 3
+ 16 17 2 2 2
+H002 (1) 16 0 0 0
+ 15 16 1 1 1
+H008 (4) 15 1 1 1
+H006 (13) 15 0 0 0
+H014 (5) 16 2 2 2
+H009 (12) 16 1 1 1
+H007 (3) 17 1 1 1
+H012 (11) 17 1 1 1
+H011 (14) 17 0 0 0
+H013 (6) 18 0 0 0
+H010 (2) 20 1 1 1
+H001 (7) 20 2 2 2
+ 19 20 1 1 1
+H003 (8) 19 1 1 1
+H005 (10) 19 1 1 1
+H000 (9)* 20 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /------------------------ H002
+ |
+ | /------------ H008
+ +----------15
+ /----------16 \------------ H006
+ | |
+ | +------------------------ H014
+ | |
+ | \------------------------ H009
+ /-----------17
+ | +------------------------------------ H007
+ | |
+ | +------------------------------------ H012
+ /----------18 |
+ | | \------------------------------------ H011
+ | |
+ | \------------------------------------------------- H013
+ |
+ +------------------------------------------------------------- H010
+ |
+-----------20------------------------------------------------------------- H001
+ |
+ | /------------ H003
+ +-----------------------------------------------19
+ | \------------ H005
+ |
+ \------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_20 --> node_18 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_18 --> node_17 8 1 1.000 2 ==> 1
+ 9 1 0.333 2 ==> 1
+ 10 1 0.500 2 ==> 1
+ node_17 --> node_16 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_16 --> node_15 11 1 0.500 2 ==> 1
+ node_15 --> H008 9 1 0.333 1 ==> 2
+ node_16 --> H014 9 1 0.333 1 ==> 2
+ 10 1 0.500 1 ==> 2
+ node_16 --> H009 12 1 0.333 2 ==> 1
+ node_17 --> H007 12 1 0.333 2 ==> 1
+ node_17 --> H012 11 1 0.500 2 ==> 1
+ node_20 --> H010 5 1 1.000 2 ==> 1
+ node_20 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_20 --> node_19 3 1 1.000 2 ==> 1
+ node_19 --> H003 4 1 1.000 2 ==> 1
+ node_19 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 13:
+
+Branch lengths and linkages for tree #13
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 21 root 0 0 0
+ 19 21 2 2 2
+ 18 19 3 3 3
+ 17 18 2 2 2
+H002 (1) 17 0 0 0
+ 15 17 2 2 2
+H007 (3) 15 1 1 1
+H012 (11) 15 1 1 1
+H011 (14) 15 0 0 0
+ 16 17 1 1 1
+H008 (4) 16 1 1 1
+H006 (13) 16 0 0 0
+H009 (12) 17 1 1 1
+H014 (5) 18 0 0 0
+H001 (7) 19 0 0 0
+H010 (2) 21 1 1 1
+H013 (6) 21 2 2 2
+ 20 21 1 1 1
+H003 (8) 20 1 1 1
+H005 (10) 20 1 1 1
+H000 (9)* 21 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /------------------------ H002
+ |
+ | /------------ H007
+ | |
+ +----------15------------ H012
+ | |
+ /----------17 \------------ H011
+ | |
+ | | /------------ H008
+ | +----------16
+ /-----------18 | \------------ H006
+ | | |
+ | | \------------------------ H009
+ /----------19 |
+ | | \------------------------------------ H014
+ | |
+ | \------------------------------------------------- H001
+ |
+ +------------------------------------------------------------- H010
+ |
+-----------21------------------------------------------------------------- H013
+ |
+ | /------------ H003
+ +-----------------------------------------------20
+ | \------------ H005
+ |
+ \------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_19 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_19 --> node_18 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_18 --> node_17 9 1 0.500 2 ==> 1
+ 10 1 1.000 2 ==> 1
+ node_17 --> node_15 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ node_15 --> H012 11 1 0.500 2 ==> 1
+ node_17 --> node_16 11 1 0.500 2 ==> 1
+ node_16 --> H008 9 1 0.500 1 ==> 2
+ node_17 --> H009 12 1 0.333 2 ==> 1
+ node_21 --> H010 5 1 1.000 2 ==> 1
+ node_21 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ node_21 --> node_20 3 1 1.000 2 ==> 1
+ node_20 --> H003 4 1 1.000 2 ==> 1
+ node_20 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 14:
+
+Branch lengths and linkages for tree #14
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 22 root 0 0 0
+ 20 22 0 0 2
+ 19 20 2 2 2
+ 18 19 3 1 3
+ 17 18 2 2 2
+H002 (1) 17 0 0 0
+ 15 17 2 2 2
+H007 (3) 15 1 1 1
+H012 (11) 15 1 1 1
+H011 (14) 15 0 0 0
+ 16 17 1 1 1
+H008 (4) 16 1 1 1
+H006 (13) 16 0 0 0
+H009 (12) 17 1 1 1
+H014 (5) 18 0 0 0
+H001 (7) 19 0 0 2
+H013 (6) 20 2 0 2
+H010 (2) 22 1 1 1
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (10) 21 1 1 1
+H000 (9)* 22 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /--------------------- H002
+ |
+ | /---------- H007
+ | |
+ +---------15---------- H012
+ | |
+ /--------17 \---------- H011
+ | |
+ | | /---------- H008
+ | +---------16
+ /---------18 | \---------- H006
+ | | |
+ | | \--------------------- H009
+ /--------19 |
+ | | \------------------------------- H014
+ | |
+ /---------20 \------------------------------------------ H001
+ | |
+ | \---------------------------------------------------- H013
+ |
+ +--------------------------------------------------------------- H010
+---------22
+ | /---------- H003
+ +---------------------------------------------------21
+ | \---------- H005
+ |
+ \--------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_20 --> node_19 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_19 --> node_18 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_18 --> node_17 9 1 0.500 2 ==> 1
+ 10 1 1.000 2 ==> 1
+ node_17 --> node_15 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ node_15 --> H012 11 1 0.500 2 ==> 1
+ node_17 --> node_16 11 1 0.500 2 ==> 1
+ node_16 --> H008 9 1 0.500 1 ==> 2
+ node_17 --> H009 12 1 0.333 2 ==> 1
+ node_20 --> H013 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ node_22 --> H010 5 1 1.000 2 ==> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 15:
+
+Branch lengths and linkages for tree #15
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 22 root 0 0 0
+ 20 22 2 2 2
+ 19 20 3 3 3
+ 18 19 1 1 2
+ 16 18 1 0 1
+H002 (1) 16 0 0 0
+ 15 16 2 2 2
+H007 (3) 15 1 1 1
+H012 (11) 15 1 1 1
+H011 (14) 15 0 0 0
+H009 (12) 16 1 1 1
+ 17 18 1 1 1
+H008 (4) 17 0 0 1
+H006 (13) 17 1 0 1
+H014 (5) 19 0 0 0
+H013 (6) 20 0 0 0
+H010 (2) 22 1 1 1
+H001 (7) 22 2 2 2
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (10) 21 1 1 1
+H000 (9)* 22 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /--------------------- H002
+ |
+ | /---------- H007
+ | |
+ /--------16---------15---------- H012
+ | | |
+ | | \---------- H011
+ | |
+ /---------18 \--------------------- H009
+ | |
+ | | /---------- H008
+ /--------19 \-------------------17
+ | | \---------- H006
+ | |
+ /---------20 \------------------------------------------ H014
+ | |
+ | \---------------------------------------------------- H013
+ |
+ +--------------------------------------------------------------- H010
+ |
+---------22--------------------------------------------------------------- H001
+ |
+ | /---------- H003
+ +---------------------------------------------------21
+ | \---------- H005
+ |
+ \--------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_20 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_20 --> node_19 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_19 --> node_18 10 1 1.000 2 ==> 1
+ node_18 --> node_16 9 1 0.500 2 --> 1
+ node_16 --> node_15 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ node_15 --> H012 11 1 0.500 2 ==> 1
+ node_16 --> H009 12 1 0.333 2 ==> 1
+ node_18 --> node_17 11 1 0.500 2 ==> 1
+ node_17 --> H006 9 1 0.500 2 --> 1
+ node_22 --> H010 5 1 1.000 2 ==> 1
+ node_22 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 16:
+
+Branch lengths and linkages for tree #16
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 21 root 0 0 0
+ 19 21 2 2 2
+ 18 19 3 3 3
+ 17 18 1 1 1
+ 16 17 1 1 1
+H002 (1) 16 0 0 0
+ 15 16 2 2 2
+H007 (3) 15 1 1 1
+H012 (11) 15 1 1 1
+H011 (14) 15 0 0 0
+H009 (12) 16 1 1 1
+H006 (13) 16 1 1 1
+H008 (4) 17 1 1 1
+H014 (5) 18 0 0 0
+H013 (6) 19 0 0 0
+H010 (2) 21 1 1 1
+H001 (7) 21 2 2 2
+ 20 21 1 1 1
+H003 (8) 20 1 1 1
+H005 (10) 20 1 1 1
+H000 (9)* 21 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /--------------------- H002
+ |
+ | /---------- H007
+ | |
+ +---------15---------- H012
+ /--------16 |
+ | | \---------- H011
+ | |
+ | +--------------------- H009
+ /---------17 |
+ | | \--------------------- H006
+ | |
+ /--------18 \------------------------------- H008
+ | |
+ /---------19 \------------------------------------------ H014
+ | |
+ | \---------------------------------------------------- H013
+ |
+ +--------------------------------------------------------------- H010
+ |
+---------21--------------------------------------------------------------- H001
+ |
+ | /---------- H003
+ +---------------------------------------------------20
+ | \---------- H005
+ |
+ \--------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_19 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_19 --> node_18 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_18 --> node_17 10 1 1.000 2 ==> 1
+ node_17 --> node_16 9 1 1.000 2 ==> 1
+ node_16 --> node_15 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ node_15 --> H012 11 1 0.333 2 ==> 1
+ node_16 --> H009 12 1 0.333 2 ==> 1
+ node_16 --> H006 11 1 0.333 2 ==> 1
+ node_17 --> H008 11 1 0.333 2 ==> 1
+ node_21 --> H010 5 1 1.000 2 ==> 1
+ node_21 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_21 --> node_20 3 1 1.000 2 ==> 1
+ node_20 --> H003 4 1 1.000 2 ==> 1
+ node_20 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 17:
+
+Branch lengths and linkages for tree #17
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 21 23 0 0 2
+ 20 21 2 2 2
+ 19 20 1 1 3
+ 18 19 2 2 2
+ 16 18 2 0 2
+H002 (1) 16 0 0 0
+ 15 16 1 1 1
+H008 (4) 15 1 1 1
+H006 (13) 15 0 0 0
+H009 (12) 16 1 1 1
+ 17 18 0 0 2
+H007 (3) 17 1 1 1
+H012 (11) 17 1 1 1
+H011 (14) 17 0 0 0
+H014 (5) 19 2 0 2
+H013 (6) 20 0 0 2
+H001 (7) 21 2 0 2
+H010 (2) 23 1 1 1
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (10) 22 1 1 1
+H000 (9)* 23 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /------------------ H002
+ |
+ | /--------- H008
+ /-------16-------15
+ | | \--------- H006
+ | |
+ | \------------------ H009
+ /--------18
+ | | /--------- H007
+ | | |
+ | \----------------17--------- H012
+ /-------19 |
+ | | \--------- H011
+ | |
+ /-------20 \------------------------------------- H014
+ | |
+ /-------21 \---------------------------------------------- H013
+ | |
+ | \------------------------------------------------------- H001
+ |
+ +---------------------------------------------------------------- H010
+--------23
+ | /--------- H003
+ +-----------------------------------------------------22
+ | \--------- H005
+ |
+ \---------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_20 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_20 --> node_19 8 1 1.000 2 ==> 1
+ node_19 --> node_18 9 1 0.500 2 ==> 1
+ 10 1 1.000 2 ==> 1
+ node_18 --> node_16 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ node_16 --> node_15 11 1 0.500 2 ==> 1
+ node_15 --> H008 9 1 0.500 1 ==> 2
+ node_16 --> H009 12 1 0.333 2 ==> 1
+ node_17 --> H007 12 1 0.333 2 ==> 1
+ node_17 --> H012 11 1 0.500 2 ==> 1
+ node_19 --> H014 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ node_21 --> H001 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 18:
+
+Branch lengths and linkages for tree #18
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 21 23 0 0 2
+ 20 21 2 2 2
+ 19 20 3 1 3
+ 18 19 1 1 2
+ 16 18 1 0 1
+H002 (1) 16 0 0 0
+ 15 16 2 2 2
+H007 (3) 15 1 1 1
+H012 (11) 15 1 1 1
+H011 (14) 15 0 0 0
+H009 (12) 16 1 1 1
+ 17 18 1 1 1
+H008 (4) 17 0 0 1
+H006 (13) 17 1 0 1
+H014 (5) 19 0 0 0
+H013 (6) 20 0 0 2
+H001 (7) 21 2 0 2
+H010 (2) 23 1 1 1
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (10) 22 1 1 1
+H000 (9)* 23 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /------------------ H002
+ |
+ | /--------- H007
+ | |
+ /-------16-------15--------- H012
+ | | |
+ | | \--------- H011
+ | |
+ /--------18 \------------------ H009
+ | |
+ | | /--------- H008
+ /-------19 \----------------17
+ | | \--------- H006
+ | |
+ /-------20 \------------------------------------- H014
+ | |
+ /-------21 \---------------------------------------------- H013
+ | |
+ | \------------------------------------------------------- H001
+ |
+ +---------------------------------------------------------------- H010
+--------23
+ | /--------- H003
+ +-----------------------------------------------------22
+ | \--------- H005
+ |
+ \---------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_20 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_20 --> node_19 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_19 --> node_18 10 1 1.000 2 ==> 1
+ node_18 --> node_16 9 1 0.500 2 --> 1
+ node_16 --> node_15 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ node_15 --> H012 11 1 0.500 2 ==> 1
+ node_16 --> H009 12 1 0.333 2 ==> 1
+ node_18 --> node_17 11 1 0.500 2 ==> 1
+ node_17 --> H006 9 1 0.500 2 --> 1
+ node_21 --> H001 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 19:
+
+Branch lengths and linkages for tree #19
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 21 23 0 0 2
+ 20 21 2 2 2
+ 19 20 3 1 3
+ 18 19 1 1 2
+ 17 18 1 1 1
+ 16 17 0 0 1
+H002 (1) 16 0 0 0
+ 15 16 2 2 2
+H007 (3) 15 1 1 1
+H012 (11) 15 1 1 1
+H011 (14) 15 0 0 0
+H009 (12) 16 1 1 1
+H006 (13) 17 1 0 1
+H008 (4) 18 1 0 1
+H014 (5) 19 0 0 0
+H013 (6) 20 0 0 2
+H001 (7) 21 2 0 2
+H010 (2) 23 1 1 1
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (10) 22 1 1 1
+H000 (9)* 23 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /---------------- H002
+ |
+ | /-------- H007
+ | |
+ /------16------15-------- H012
+ | | |
+ | | \-------- H011
+ /------17 |
+ | | \---------------- H009
+ | |
+ /-------18 \------------------------ H006
+ | |
+ /------19 \-------------------------------- H008
+ | |
+ /------20 \----------------------------------------- H014
+ | |
+ /------21 \------------------------------------------------- H013
+ | |
+ | \--------------------------------------------------------- H001
+ |
+ +----------------------------------------------------------------- H010
+-------23
+ | /-------- H003
+ +-------------------------------------------------------22
+ | \-------- H005
+ |
+ \----------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_20 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_20 --> node_19 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_19 --> node_18 10 1 1.000 2 ==> 1
+ node_18 --> node_17 9 1 1.000 2 ==> 1
+ node_16 --> node_15 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ node_15 --> H012 11 1 0.333 2 ==> 1
+ node_16 --> H009 12 1 0.333 2 ==> 1
+ node_17 --> H006 11 1 0.333 2 --> 1
+ node_18 --> H008 11 1 0.333 2 --> 1
+ node_21 --> H001 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 20:
+
+Branch lengths and linkages for tree #20
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 24 root 0 0 0
+ 22 24 0 0 2
+ 21 22 2 2 2
+ 20 21 3 1 3
+ 19 20 2 2 2
+H002 (1) 19 0 0 0
+ 18 19 0 0 1
+ 16 18 2 2 2
+ 15 16 0 0 1
+H007 (3) 15 1 1 1
+H011 (14) 15 0 0 0
+H012 (11) 16 1 0 1
+ 17 18 1 0 1
+H008 (4) 17 1 1 1
+H006 (13) 17 0 0 0
+H009 (12) 19 1 1 1
+H014 (5) 20 0 0 0
+H013 (6) 21 0 0 2
+H001 (7) 22 2 0 2
+H010 (2) 24 1 1 1
+ 23 24 1 1 1
+H003 (8) 23 1 1 1
+H005 (10) 23 1 1 1
+H000 (9)* 24 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /-------------------------------- H002
+ |
+ | /-------- H007
+ | /------15
+ | | \-------- H011
+ | /------16
+ /-------19 | \---------------- H012
+ | +------18
+ | | | /-------- H008
+ | | \--------------17
+ /------20 | \-------- H006
+ | | |
+ | | \-------------------------------- H009
+ /------21 |
+ | | \----------------------------------------- H014
+ | |
+ /------22 \------------------------------------------------- H013
+ | |
+ | \--------------------------------------------------------- H001
+ |
+ +----------------------------------------------------------------- H010
+-------24
+ | /-------- H003
+ +-------------------------------------------------------23
+ | \-------- H005
+ |
+ \----------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_21 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_21 --> node_20 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_20 --> node_19 9 1 0.500 2 ==> 1
+ 10 1 1.000 2 ==> 1
+ node_18 --> node_16 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ node_16 --> H012 11 1 0.500 2 --> 1
+ node_18 --> node_17 11 1 0.500 2 --> 1
+ node_17 --> H008 9 1 0.500 1 ==> 2
+ node_19 --> H009 12 1 0.333 2 ==> 1
+ node_22 --> H001 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ node_24 --> H010 5 1 1.000 2 ==> 1
+ node_24 --> node_23 3 1 1.000 2 ==> 1
+ node_23 --> H003 4 1 1.000 2 ==> 1
+ node_23 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 21:
+
+Branch lengths and linkages for tree #21
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 21 23 0 0 2
+ 20 21 2 2 2
+ 19 20 3 1 3
+ 18 19 2 2 2
+H002 (1) 18 0 0 0
+ 17 18 1 1 1
+ 16 17 2 2 2
+ 15 16 1 1 1
+H007 (3) 15 1 1 1
+H011 (14) 15 0 0 0
+H012 (11) 16 0 0 0
+H008 (4) 17 1 1 1
+H006 (13) 17 0 0 0
+H009 (12) 18 1 1 1
+H014 (5) 19 0 0 0
+H013 (6) 20 0 0 2
+H001 (7) 21 2 0 2
+H010 (2) 23 1 1 1
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (10) 22 1 1 1
+H000 (9)* 23 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /-------------------------------- H002
+ |
+ | /-------- H007
+ | /------15
+ | | \-------- H011
+ | /------16
+ /-------18 | \---------------- H012
+ | | |
+ | +------17------------------------ H008
+ | | |
+ /------19 | \------------------------ H006
+ | | |
+ | | \-------------------------------- H009
+ /------20 |
+ | | \----------------------------------------- H014
+ | |
+ /------21 \------------------------------------------------- H013
+ | |
+ | \--------------------------------------------------------- H001
+ |
+ +----------------------------------------------------------------- H010
+-------23
+ | /-------- H003
+ +-------------------------------------------------------22
+ | \-------- H005
+ |
+ \----------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_20 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_20 --> node_19 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_19 --> node_18 9 1 0.500 2 ==> 1
+ 10 1 1.000 2 ==> 1
+ node_18 --> node_17 11 1 0.500 2 ==> 1
+ node_17 --> node_16 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_16 --> node_15 11 1 0.500 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ node_17 --> H008 9 1 0.500 1 ==> 2
+ node_18 --> H009 12 1 0.333 2 ==> 1
+ node_21 --> H001 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 22:
+
+Branch lengths and linkages for tree #22
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 24 root 0 0 0
+ 22 24 0 0 2
+ 21 22 2 2 2
+ 20 21 3 1 3
+ 19 20 2 2 2
+H002 (1) 19 0 0 0
+ 17 19 0 0 1
+ 16 17 2 2 2
+H007 (3) 16 1 0 1
+ 15 16 0 0 1
+H012 (11) 15 1 1 1
+H011 (14) 15 0 0 0
+H009 (12) 17 1 0 1
+ 18 19 1 1 1
+H008 (4) 18 1 1 1
+H006 (13) 18 0 0 0
+H014 (5) 20 0 0 0
+H013 (6) 21 0 0 2
+H001 (7) 22 2 0 2
+H010 (2) 24 1 1 1
+ 23 24 1 1 1
+H003 (8) 23 1 1 1
+H005 (10) 23 1 1 1
+H000 (9)* 24 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /-------------------------------- H002
+ |
+ | /---------------- H007
+ | |
+ | /------16 /-------- H012
+ | | \------15
+ /-------19------17 \-------- H011
+ | | |
+ | | \------------------------ H009
+ | |
+ /------20 | /-------- H008
+ | | \----------------------18
+ | | \-------- H006
+ /------21 |
+ | | \----------------------------------------- H014
+ | |
+ /------22 \------------------------------------------------- H013
+ | |
+ | \--------------------------------------------------------- H001
+ |
+ +----------------------------------------------------------------- H010
+-------24
+ | /-------- H003
+ +-------------------------------------------------------23
+ | \-------- H005
+ |
+ \----------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_21 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_21 --> node_20 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_20 --> node_19 9 1 0.500 2 ==> 1
+ 10 1 1.000 2 ==> 1
+ node_17 --> node_16 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 --> 1
+ node_15 --> H012 11 1 0.500 2 ==> 1
+ node_17 --> H009 12 1 0.333 2 --> 1
+ node_19 --> node_18 11 1 0.500 2 ==> 1
+ node_18 --> H008 9 1 0.500 1 ==> 2
+ node_22 --> H001 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ node_24 --> H010 5 1 1.000 2 ==> 1
+ node_24 --> node_23 3 1 1.000 2 ==> 1
+ node_23 --> H003 4 1 1.000 2 ==> 1
+ node_23 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 23:
+
+Branch lengths and linkages for tree #23
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 21 23 2 2 2
+ 20 21 1 1 1
+ 19 20 2 2 2
+ 18 19 0 0 1
+ 17 18 2 2 2
+ 15 17 0 0 1
+H002 (1) 15 0 0 0
+H009 (12) 15 1 1 1
+ 16 17 1 0 1
+H008 (4) 16 1 1 1
+H006 (13) 16 0 0 0
+H012 (11) 18 1 0 1
+H007 (3) 19 1 1 1
+H011 (14) 19 0 0 0
+H014 (5) 20 2 2 2
+H013 (6) 21 0 0 0
+H010 (2) 23 1 1 1
+H001 (7) 23 2 2 2
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (10) 22 1 1 1
+H000 (9)* 23 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /--------- H002
+ /-------15
+ | \--------- H009
+ /-------17
+ | | /--------- H008
+ | \-------16
+ /--------18 \--------- H006
+ | |
+ | \--------------------------- H012
+ /-------19
+ | +------------------------------------- H007
+ | |
+ /-------20 \------------------------------------- H011
+ | |
+ /-------21 \---------------------------------------------- H014
+ | |
+ | \------------------------------------------------------- H013
+ |
+ +---------------------------------------------------------------- H010
+ |
+--------23---------------------------------------------------------------- H001
+ |
+ | /--------- H003
+ +-----------------------------------------------------22
+ | \--------- H005
+ |
+ \---------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_21 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_21 --> node_20 8 1 1.000 2 ==> 1
+ node_20 --> node_19 9 1 0.500 2 ==> 1
+ 10 1 1.000 2 ==> 1
+ node_18 --> node_17 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_17 --> node_16 11 1 0.500 2 --> 1
+ node_16 --> H008 9 1 0.500 1 ==> 2
+ node_18 --> H012 11 1 0.500 2 --> 1
+ node_19 --> H007 12 1 0.333 2 ==> 1
+ node_20 --> H014 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+ node_23 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 24:
+
+Branch lengths and linkages for tree #24
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 21 23 2 2 2
+ 20 21 1 1 3
+ 18 20 2 2 2
+ 17 18 1 0 2
+ 15 17 1 0 1
+H002 (1) 15 0 0 0
+H009 (12) 15 1 1 1
+ 16 17 1 1 1
+H008 (4) 16 0 0 1
+H006 (13) 16 1 0 1
+H014 (5) 18 0 0 2
+ 19 20 2 0 2
+H007 (3) 19 1 1 1
+H012 (11) 19 1 1 1
+H011 (14) 19 0 0 0
+H013 (6) 21 0 0 0
+H010 (2) 23 1 1 1
+H001 (7) 23 2 2 2
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (10) 22 1 1 1
+H000 (9)* 23 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /---------- H002
+ /---------15
+ | \---------- H009
+ /--------17
+ | | /---------- H008
+ | \---------16
+ /---------18 \---------- H006
+ | |
+ | \------------------------------- H014
+ /--------20
+ | | /---------- H007
+ | | |
+ | \------------------------------19---------- H012
+ /---------21 |
+ | | \---------- H011
+ | |
+ | \---------------------------------------------------- H013
+ |
+ +--------------------------------------------------------------- H010
+ |
+---------23--------------------------------------------------------------- H001
+ |
+ | /---------- H003
+ +---------------------------------------------------22
+ | \---------- H005
+ |
+ \--------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_21 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_21 --> node_20 8 1 1.000 2 ==> 1
+ node_20 --> node_18 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_18 --> node_17 10 1 0.500 2 --> 1
+ node_17 --> node_15 9 1 0.333 2 --> 1
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_17 --> node_16 11 1 0.500 2 ==> 1
+ node_16 --> H006 9 1 0.333 2 --> 1
+ node_20 --> node_19 9 1 0.333 2 --> 1
+ 10 1 0.500 2 --> 1
+ node_19 --> H007 12 1 0.333 2 ==> 1
+ node_19 --> H012 11 1 0.500 2 ==> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+ node_23 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 25:
+
+Branch lengths and linkages for tree #25
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 22 root 0 0 0
+ 20 22 2 2 2
+ 19 20 1 1 1
+ 18 19 2 2 2
+ 17 18 1 1 1
+ 16 17 2 2 2
+ 15 16 1 1 1
+H002 (1) 15 0 0 0
+H009 (12) 15 1 1 1
+H008 (4) 16 1 1 1
+H006 (13) 16 0 0 0
+H012 (11) 17 0 0 0
+H007 (3) 18 1 1 1
+H011 (14) 18 0 0 0
+H014 (5) 19 2 2 2
+H013 (6) 20 0 0 0
+H010 (2) 22 1 1 1
+H001 (7) 22 2 2 2
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (10) 21 1 1 1
+H000 (9)* 22 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /--------- H002
+ /-------15
+ | \--------- H009
+ |
+ /-------16------------------ H008
+ | |
+ /--------17 \------------------ H006
+ | |
+ | \--------------------------- H012
+ /-------18
+ | +------------------------------------- H007
+ | |
+ /-------19 \------------------------------------- H011
+ | |
+ /-------20 \---------------------------------------------- H014
+ | |
+ | \------------------------------------------------------- H013
+ |
+ +---------------------------------------------------------------- H010
+ |
+--------22---------------------------------------------------------------- H001
+ |
+ | /--------- H003
+ +-----------------------------------------------------21
+ | \--------- H005
+ |
+ \---------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_20 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_20 --> node_19 8 1 1.000 2 ==> 1
+ node_19 --> node_18 9 1 0.500 2 ==> 1
+ 10 1 1.000 2 ==> 1
+ node_18 --> node_17 11 1 0.500 2 ==> 1
+ node_17 --> node_16 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_16 --> node_15 11 1 0.500 1 ==> 2
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_16 --> H008 9 1 0.500 1 ==> 2
+ node_18 --> H007 12 1 0.333 2 ==> 1
+ node_19 --> H014 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_22 --> H010 5 1 1.000 2 ==> 1
+ node_22 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 26:
+
+Branch lengths and linkages for tree #26
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 21 23 2 2 2
+ 20 21 1 1 2
+ 18 20 2 2 2
+ 17 18 1 0 2
+ 16 17 1 1 1
+ 15 16 0 0 1
+H002 (1) 15 0 0 0
+H009 (12) 15 1 1 1
+H006 (13) 16 1 0 1
+H008 (4) 17 1 0 1
+H014 (5) 18 0 0 1
+ 19 20 2 1 2
+H007 (3) 19 1 1 1
+H012 (11) 19 1 1 1
+H011 (14) 19 0 0 0
+H013 (6) 21 0 0 0
+H010 (2) 23 1 1 1
+H001 (7) 23 2 2 2
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (10) 22 1 1 1
+H000 (9)* 23 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /--------- H002
+ /-------15
+ | \--------- H009
+ /-------16
+ | \------------------ H006
+ /--------17
+ | \--------------------------- H008
+ /-------18
+ | \------------------------------------- H014
+ |
+ /-------20 /--------- H007
+ | | |
+ | \-----------------------------------19--------- H012
+ /-------21 |
+ | | \--------- H011
+ | |
+ | \------------------------------------------------------- H013
+ |
+ +---------------------------------------------------------------- H010
+ |
+--------23---------------------------------------------------------------- H001
+ |
+ | /--------- H003
+ +-----------------------------------------------------22
+ | \--------- H005
+ |
+ \---------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_21 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_21 --> node_20 8 1 1.000 2 ==> 1
+ node_20 --> node_18 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_18 --> node_17 10 1 0.500 2 --> 1
+ node_17 --> node_16 9 1 0.500 2 ==> 1
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_16 --> H006 11 1 0.333 2 --> 1
+ node_17 --> H008 11 1 0.333 2 --> 1
+ node_20 --> node_19 9 1 0.500 2 ==> 1
+ 10 1 0.500 2 --> 1
+ node_19 --> H007 12 1 0.333 2 ==> 1
+ node_19 --> H012 11 1 0.333 2 ==> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+ node_23 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 27:
+
+Branch lengths and linkages for tree #27
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 21 root 0 0 0
+ 19 21 2 2 2
+ 18 19 3 3 3
+ 17 18 2 2 2
+H002 (1) 17 0 0 0
+ 16 17 0 0 1
+ 15 16 1 1 1
+H008 (4) 15 1 0 1
+H006 (13) 15 0 0 1
+H014 (5) 16 2 1 2
+H009 (12) 17 1 1 1
+H007 (3) 18 1 1 1
+H012 (11) 18 1 1 1
+H011 (14) 18 0 0 0
+H013 (6) 19 0 0 0
+H010 (2) 21 1 1 1
+H001 (7) 21 2 2 2
+ 20 21 1 1 1
+H003 (8) 20 1 1 1
+H005 (10) 20 1 1 1
+H000 (9)* 21 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /------------------------------- H002
+ |
+ | /---------- H008
+ | /---------15
+ /---------17 | \---------- H006
+ | +--------16
+ | | \--------------------- H014
+ | |
+ | \------------------------------- H009
+ /--------18
+ | +------------------------------------------ H007
+ | |
+ | +------------------------------------------ H012
+ /---------19 |
+ | | \------------------------------------------ H011
+ | |
+ | \---------------------------------------------------- H013
+ |
+ +--------------------------------------------------------------- H010
+ |
+---------21--------------------------------------------------------------- H001
+ |
+ | /---------- H003
+ +---------------------------------------------------20
+ | \---------- H005
+ |
+ \--------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_19 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_19 --> node_18 8 1 1.000 2 ==> 1
+ 9 1 0.333 2 ==> 1
+ 10 1 0.500 2 ==> 1
+ node_18 --> node_17 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_16 --> node_15 11 1 0.500 2 ==> 1
+ node_15 --> H008 9 1 0.333 1 --> 2
+ node_16 --> H014 9 1 0.333 1 --> 2
+ 10 1 0.500 1 ==> 2
+ node_17 --> H009 12 1 0.333 2 ==> 1
+ node_18 --> H007 12 1 0.333 2 ==> 1
+ node_18 --> H012 11 1 0.500 2 ==> 1
+ node_21 --> H010 5 1 1.000 2 ==> 1
+ node_21 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_21 --> node_20 3 1 1.000 2 ==> 1
+ node_20 --> H003 4 1 1.000 2 ==> 1
+ node_20 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 28:
+
+Branch lengths and linkages for tree #28
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 21 root 0 0 0
+ 19 21 2 2 2
+ 18 19 3 3 3
+ 17 18 2 2 2
+H002 (1) 17 0 0 0
+ 16 17 0 0 1
+ 15 16 1 1 1
+H008 (4) 15 1 0 1
+H014 (5) 15 1 1 2
+H006 (13) 16 1 0 1
+H009 (12) 17 1 1 1
+H007 (3) 18 1 1 1
+H012 (11) 18 1 1 1
+H011 (14) 18 0 0 0
+H013 (6) 19 0 0 0
+H010 (2) 21 1 1 1
+H001 (7) 21 2 2 2
+ 20 21 1 1 1
+H003 (8) 20 1 1 1
+H005 (10) 20 1 1 1
+H000 (9)* 21 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /------------------------------- H002
+ |
+ | /---------- H008
+ | /---------15
+ /---------17 | \---------- H014
+ | +--------16
+ | | \--------------------- H006
+ | |
+ | \------------------------------- H009
+ /--------18
+ | +------------------------------------------ H007
+ | |
+ | +------------------------------------------ H012
+ /---------19 |
+ | | \------------------------------------------ H011
+ | |
+ | \---------------------------------------------------- H013
+ |
+ +--------------------------------------------------------------- H010
+ |
+---------21--------------------------------------------------------------- H001
+ |
+ | /---------- H003
+ +---------------------------------------------------20
+ | \---------- H005
+ |
+ \--------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_19 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_19 --> node_18 8 1 1.000 2 ==> 1
+ 9 1 0.500 2 ==> 1
+ 10 1 0.500 2 ==> 1
+ node_18 --> node_17 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_16 --> node_15 9 1 0.500 1 ==> 2
+ node_15 --> H008 11 1 0.333 2 --> 1
+ node_15 --> H014 10 1 0.500 1 ==> 2
+ node_16 --> H006 11 1 0.333 2 --> 1
+ node_17 --> H009 12 1 0.333 2 ==> 1
+ node_18 --> H007 12 1 0.333 2 ==> 1
+ node_18 --> H012 11 1 0.333 2 ==> 1
+ node_21 --> H010 5 1 1.000 2 ==> 1
+ node_21 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_21 --> node_20 3 1 1.000 2 ==> 1
+ node_20 --> H003 4 1 1.000 2 ==> 1
+ node_20 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 29:
+
+Branch lengths and linkages for tree #29
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 22 root 0 0 0
+ 20 22 0 0 2
+ 19 20 2 2 2
+ 18 19 3 1 3
+ 17 18 1 1 1
+ 16 17 1 1 1
+H002 (1) 16 0 0 0
+ 15 16 2 2 2
+H007 (3) 15 1 1 1
+H012 (11) 15 1 1 1
+H011 (14) 15 0 0 0
+H009 (12) 16 1 1 1
+H006 (13) 16 1 1 1
+H008 (4) 17 1 1 1
+H014 (5) 18 0 0 0
+H013 (6) 19 0 0 2
+H001 (7) 20 2 0 2
+H010 (2) 22 1 1 1
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (10) 21 1 1 1
+H000 (9)* 22 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /------------------ H002
+ |
+ | /--------- H007
+ | |
+ +-------15--------- H012
+ /-------16 |
+ | | \--------- H011
+ | |
+ | +------------------ H009
+ /--------17 |
+ | | \------------------ H006
+ | |
+ /-------18 \--------------------------- H008
+ | |
+ /-------19 \------------------------------------- H014
+ | |
+ /-------20 \---------------------------------------------- H013
+ | |
+ | \------------------------------------------------------- H001
+ |
+ +---------------------------------------------------------------- H010
+--------22
+ | /--------- H003
+ +-----------------------------------------------------21
+ | \--------- H005
+ |
+ \---------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_20 --> node_19 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_19 --> node_18 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_18 --> node_17 10 1 1.000 2 ==> 1
+ node_17 --> node_16 9 1 1.000 2 ==> 1
+ node_16 --> node_15 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ node_15 --> H012 11 1 0.333 2 ==> 1
+ node_16 --> H009 12 1 0.333 2 ==> 1
+ node_16 --> H006 11 1 0.333 2 ==> 1
+ node_17 --> H008 11 1 0.333 2 ==> 1
+ node_20 --> H001 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ node_22 --> H010 5 1 1.000 2 ==> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 30:
+
+Branch lengths and linkages for tree #30
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 22 root 0 0 0
+ 20 22 2 2 2
+ 19 20 2 2 3
+ 17 19 2 2 2
+ 15 17 1 0 1
+H002 (1) 15 0 0 0
+H009 (12) 15 1 1 1
+ 16 17 1 1 1
+H008 (4) 16 0 0 1
+H006 (13) 16 1 0 1
+H014 (5) 17 1 1 2
+ 18 19 1 0 1
+H007 (3) 18 1 1 1
+H012 (11) 18 1 1 1
+H011 (14) 18 0 0 0
+H013 (6) 20 0 0 0
+H010 (2) 22 1 1 1
+H001 (7) 22 2 2 2
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (10) 21 1 1 1
+H000 (9)* 22 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /------------ H002
+ /----------15
+ | \------------ H009
+ |
+ | /------------ H008
+ /----------17----------16
+ | | \------------ H006
+ | |
+ | \------------------------ H014
+ /-----------19
+ | | /------------ H007
+ | | |
+ | \----------------------18------------ H012
+ /----------20 |
+ | | \------------ H011
+ | |
+ | \------------------------------------------------- H013
+ |
+ +------------------------------------------------------------- H010
+ |
+-----------22------------------------------------------------------------- H001
+ |
+ | /------------ H003
+ +-----------------------------------------------21
+ | \------------ H005
+ |
+ \------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_20 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_20 --> node_19 8 1 1.000 2 ==> 1
+ 10 1 0.500 2 ==> 1
+ node_19 --> node_17 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_17 --> node_15 9 1 0.333 2 --> 1
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_17 --> node_16 11 1 0.500 2 ==> 1
+ node_16 --> H006 9 1 0.333 2 --> 1
+ node_17 --> H014 10 1 0.500 1 ==> 2
+ node_19 --> node_18 9 1 0.333 2 --> 1
+ node_18 --> H007 12 1 0.333 2 ==> 1
+ node_18 --> H012 11 1 0.500 2 ==> 1
+ node_22 --> H010 5 1 1.000 2 ==> 1
+ node_22 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 31:
+
+Branch lengths and linkages for tree #31
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 25 root 0 0 0
+ 23 25 0 0 2
+ 22 23 2 2 2
+ 21 22 3 1 3
+ 20 21 1 1 2
+ 18 20 1 0 1
+H002 (1) 18 0 0 0
+ 17 18 0 0 1
+ 16 17 2 2 2
+H007 (3) 16 1 0 1
+ 15 16 0 0 1
+H012 (11) 15 1 1 1
+H011 (14) 15 0 0 0
+H009 (12) 17 1 0 1
+ 19 20 1 1 1
+H008 (4) 19 0 0 1
+H006 (13) 19 1 0 1
+H014 (5) 21 0 0 0
+H013 (6) 22 0 0 2
+H001 (7) 23 2 0 2
+H010 (2) 25 1 1 1
+ 24 25 1 1 1
+H003 (8) 24 1 1 1
+H005 (10) 24 1 1 1
+H000 (9)* 25 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /----------------------------- H002
+ |
+ | /--------------- H007
+ /-----18 |
+ | | /-----16 /------- H012
+ | | | \------15
+ | \-----17 \------- H011
+ /------20 |
+ | | \---------------------- H009
+ | |
+ | | /------- H008
+ /-----21 \---------------------------19
+ | | \------- H006
+ | |
+ /-----22 \-------------------------------------------- H014
+ | |
+ /------23 \--------------------------------------------------- H013
+ | |
+ | \---------------------------------------------------------- H001
+ |
+ +------------------------------------------------------------------ H010
+------25
+ | /------- H003
+ +---------------------------------------------------------24
+ | \------- H005
+ |
+ \------------------------------------------------------------------ H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_22 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_22 --> node_21 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_21 --> node_20 10 1 1.000 2 ==> 1
+ node_20 --> node_18 9 1 0.500 2 --> 1
+ node_17 --> node_16 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 --> 1
+ node_15 --> H012 11 1 0.500 2 ==> 1
+ node_17 --> H009 12 1 0.333 2 --> 1
+ node_20 --> node_19 11 1 0.500 2 ==> 1
+ node_19 --> H006 9 1 0.500 2 --> 1
+ node_23 --> H001 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ node_25 --> H010 5 1 1.000 2 ==> 1
+ node_25 --> node_24 3 1 1.000 2 ==> 1
+ node_24 --> H003 4 1 1.000 2 ==> 1
+ node_24 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 32:
+
+Branch lengths and linkages for tree #32
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 25 root 0 0 0
+ 23 25 0 0 2
+ 22 23 2 2 2
+ 21 22 3 1 3
+ 20 21 1 1 2
+ 15 20 1 0 1
+H002 (1) 15 0 0 0
+H009 (12) 15 1 1 1
+ 19 20 1 1 1
+ 18 19 1 0 1
+ 17 18 2 2 2
+ 16 17 1 1 1
+H007 (3) 16 1 1 1
+H011 (14) 16 0 0 0
+H012 (11) 17 0 0 0
+H006 (13) 18 0 0 0
+H008 (4) 19 0 0 1
+H014 (5) 21 0 0 0
+H013 (6) 22 0 0 2
+H001 (7) 23 2 0 2
+H010 (2) 25 1 1 1
+ 24 25 1 1 1
+H003 (8) 24 1 1 1
+H005 (10) 24 1 1 1
+H000 (9)* 25 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /------- H002
+ /---------------------------15
+ | \------- H009
+ |
+ | /------- H007
+ | /------16
+ /------20 | \------- H011
+ | | /-----17
+ | | | \--------------- H012
+ | | /-----18
+ /-----21 | | \---------------------- H006
+ | | \-----19
+ | | \----------------------------- H008
+ /-----22 |
+ | | \-------------------------------------------- H014
+ | |
+ /------23 \--------------------------------------------------- H013
+ | |
+ | \---------------------------------------------------------- H001
+ |
+ +------------------------------------------------------------------ H010
+------25
+ | /------- H003
+ +---------------------------------------------------------24
+ | \------- H005
+ |
+ \------------------------------------------------------------------ H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_22 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_22 --> node_21 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_21 --> node_20 10 1 1.000 2 ==> 1
+ node_20 --> node_15 9 1 0.500 2 --> 1
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_20 --> node_19 11 1 0.500 2 ==> 1
+ node_19 --> node_18 9 1 0.500 2 --> 1
+ node_18 --> node_17 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_17 --> node_16 11 1 0.500 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 ==> 1
+ node_23 --> H001 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ node_25 --> H010 5 1 1.000 2 ==> 1
+ node_25 --> node_24 3 1 1.000 2 ==> 1
+ node_24 --> H003 4 1 1.000 2 ==> 1
+ node_24 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 33:
+
+Branch lengths and linkages for tree #33
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 21 23 2 2 2
+ 20 21 3 3 3
+ 19 20 1 1 1
+ 18 19 1 1 1
+H002 (1) 18 0 0 0
+ 17 18 0 0 1
+ 16 17 2 2 2
+H007 (3) 16 1 0 1
+ 15 16 0 0 1
+H012 (11) 15 1 1 1
+H011 (14) 15 0 0 0
+H009 (12) 17 1 0 1
+H006 (13) 18 1 1 1
+H008 (4) 19 1 1 1
+H014 (5) 20 0 0 0
+H013 (6) 21 0 0 0
+H010 (2) 23 1 1 1
+H001 (7) 23 2 2 2
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (10) 22 1 1 1
+H000 (9)* 23 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /-------------------------------- H002
+ |
+ | /---------------- H007
+ | |
+ | /------16 /-------- H012
+ /-------18 | \------15
+ | +------17 \-------- H011
+ | | |
+ | | \------------------------ H009
+ /------19 |
+ | | \-------------------------------- H006
+ | |
+ /------20 \----------------------------------------- H008
+ | |
+ /------21 \------------------------------------------------- H014
+ | |
+ | \--------------------------------------------------------- H013
+ |
+ +----------------------------------------------------------------- H010
+ |
+-------23----------------------------------------------------------------- H001
+ |
+ | /-------- H003
+ +-------------------------------------------------------22
+ | \-------- H005
+ |
+ \----------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_21 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_21 --> node_20 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_20 --> node_19 10 1 1.000 2 ==> 1
+ node_19 --> node_18 9 1 1.000 2 ==> 1
+ node_17 --> node_16 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 --> 1
+ node_15 --> H012 11 1 0.333 2 ==> 1
+ node_17 --> H009 12 1 0.333 2 --> 1
+ node_18 --> H006 11 1 0.333 2 ==> 1
+ node_19 --> H008 11 1 0.333 2 ==> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+ node_23 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 34:
+
+Branch lengths and linkages for tree #34
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 21 23 2 2 2
+ 20 21 3 3 3
+ 19 20 2 2 2
+H002 (1) 19 0 0 0
+ 17 19 0 0 1
+ 16 17 2 2 2
+H007 (3) 16 1 0 1
+ 15 16 0 0 1
+H012 (11) 15 1 1 1
+H011 (14) 15 0 0 0
+H009 (12) 17 1 0 1
+ 18 19 1 1 1
+H008 (4) 18 1 1 1
+H006 (13) 18 0 0 0
+H014 (5) 20 0 0 0
+H001 (7) 21 0 0 0
+H010 (2) 23 1 1 1
+H013 (6) 23 2 2 2
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (10) 22 1 1 1
+H000 (9)* 23 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /------------------------------------- H002
+ |
+ | /------------------ H007
+ | |
+ | /-------16 /--------- H012
+ | | \-------15
+ /-------19--------17 \--------- H011
+ | | |
+ | | \--------------------------- H009
+ | |
+ /-------20 | /--------- H008
+ | | \--------------------------18
+ | | \--------- H006
+ /-------21 |
+ | | \---------------------------------------------- H014
+ | |
+ | \------------------------------------------------------- H001
+ |
+ +---------------------------------------------------------------- H010
+ |
+--------23---------------------------------------------------------------- H013
+ |
+ | /--------- H003
+ +-----------------------------------------------------22
+ | \--------- H005
+ |
+ \---------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_21 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_21 --> node_20 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_20 --> node_19 9 1 0.500 2 ==> 1
+ 10 1 1.000 2 ==> 1
+ node_17 --> node_16 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 --> 1
+ node_15 --> H012 11 1 0.500 2 ==> 1
+ node_17 --> H009 12 1 0.333 2 --> 1
+ node_19 --> node_18 11 1 0.500 2 ==> 1
+ node_18 --> H008 9 1 0.500 1 ==> 2
+ node_23 --> H010 5 1 1.000 2 ==> 1
+ node_23 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 35:
+
+Branch lengths and linkages for tree #35
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 22 root 0 0 0
+ 20 22 2 2 2
+ 19 20 3 3 3
+ 18 19 0 0 1
+ 17 18 2 2 2
+ 16 17 0 0 1
+H002 (1) 16 0 0 0
+ 15 16 1 1 1
+H008 (4) 15 1 1 1
+H006 (13) 15 0 0 0
+H014 (5) 16 2 2 2
+H009 (12) 17 1 0 1
+H007 (3) 18 1 0 1
+H012 (11) 19 1 1 1
+H011 (14) 19 0 0 0
+H013 (6) 20 0 0 0
+H010 (2) 22 1 1 1
+H001 (7) 22 2 2 2
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (10) 21 1 1 1
+H000 (9)* 22 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /------------------ H002
+ |
+ | /--------- H008
+ /-------16-------15
+ | | \--------- H006
+ | |
+ /--------17 \------------------ H014
+ | |
+ /-------18 \--------------------------- H009
+ | |
+ | \------------------------------------- H007
+ /-------19
+ | +---------------------------------------------- H012
+ | |
+ /-------20 \---------------------------------------------- H011
+ | |
+ | \------------------------------------------------------- H013
+ |
+ +---------------------------------------------------------------- H010
+ |
+--------22---------------------------------------------------------------- H001
+ |
+ | /--------- H003
+ +-----------------------------------------------------21
+ | \--------- H005
+ |
+ \---------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_20 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_20 --> node_19 8 1 1.000 2 ==> 1
+ 9 1 0.333 2 ==> 1
+ 10 1 0.500 2 ==> 1
+ node_18 --> node_17 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_16 --> node_15 11 1 0.500 2 ==> 1
+ node_15 --> H008 9 1 0.333 1 ==> 2
+ node_16 --> H014 9 1 0.333 1 ==> 2
+ 10 1 0.500 1 ==> 2
+ node_17 --> H009 12 1 0.333 2 --> 1
+ node_18 --> H007 12 1 0.333 2 --> 1
+ node_19 --> H012 11 1 0.500 2 ==> 1
+ node_22 --> H010 5 1 1.000 2 ==> 1
+ node_22 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 36:
+
+Branch lengths and linkages for tree #36
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 24 root 0 0 0
+ 22 24 0 0 2
+ 21 22 2 2 2
+ 20 21 3 1 3
+ 19 20 2 2 2
+H002 (1) 19 0 0 0
+ 17 19 0 0 1
+ 16 17 2 2 2
+H007 (3) 16 1 0 1
+ 15 16 0 0 1
+H012 (11) 15 1 1 1
+H011 (14) 15 0 0 0
+H009 (12) 17 1 0 1
+ 18 19 1 1 1
+H008 (4) 18 1 1 1
+H006 (13) 18 0 0 0
+H014 (5) 20 0 0 0
+H001 (7) 21 0 0 2
+H013 (6) 22 2 0 2
+H010 (2) 24 1 1 1
+ 23 24 1 1 1
+H003 (8) 23 1 1 1
+H005 (10) 23 1 1 1
+H000 (9)* 24 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /-------------------------------- H002
+ |
+ | /---------------- H007
+ | |
+ | /------16 /-------- H012
+ | | \------15
+ /-------19------17 \-------- H011
+ | | |
+ | | \------------------------ H009
+ | |
+ /------20 | /-------- H008
+ | | \----------------------18
+ | | \-------- H006
+ /------21 |
+ | | \----------------------------------------- H014
+ | |
+ /------22 \------------------------------------------------- H001
+ | |
+ | \--------------------------------------------------------- H013
+ |
+ +----------------------------------------------------------------- H010
+-------24
+ | /-------- H003
+ +-------------------------------------------------------23
+ | \-------- H005
+ |
+ \----------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_21 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_21 --> node_20 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_20 --> node_19 9 1 0.500 2 ==> 1
+ 10 1 1.000 2 ==> 1
+ node_17 --> node_16 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 --> 1
+ node_15 --> H012 11 1 0.500 2 ==> 1
+ node_17 --> H009 12 1 0.333 2 --> 1
+ node_19 --> node_18 11 1 0.500 2 ==> 1
+ node_18 --> H008 9 1 0.500 1 ==> 2
+ node_22 --> H013 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ node_24 --> H010 5 1 1.000 2 ==> 1
+ node_24 --> node_23 3 1 1.000 2 ==> 1
+ node_23 --> H003 4 1 1.000 2 ==> 1
+ node_23 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 37:
+
+Branch lengths and linkages for tree #37
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 22 root 0 0 0
+ 20 22 2 2 2
+ 19 20 3 3 3
+ 18 19 0 0 1
+ 17 18 2 2 2
+ 15 17 0 0 1
+H002 (1) 15 0 0 0
+H014 (5) 15 2 2 2
+H009 (12) 15 1 1 1
+ 16 17 1 0 1
+H008 (4) 16 1 1 1
+H006 (13) 16 0 0 0
+H012 (11) 18 1 0 1
+H007 (3) 19 1 1 1
+H011 (14) 19 0 0 0
+H013 (6) 20 0 0 0
+H010 (2) 22 1 1 1
+H001 (7) 22 2 2 2
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (10) 21 1 1 1
+H000 (9)* 22 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /---------- H002
+ |
+ /---------15---------- H014
+ | |
+ | \---------- H009
+ /--------17
+ | | /---------- H008
+ | \---------16
+ /---------18 \---------- H006
+ | |
+ | \------------------------------- H012
+ /--------19
+ | +------------------------------------------ H007
+ | |
+ /---------20 \------------------------------------------ H011
+ | |
+ | \---------------------------------------------------- H013
+ |
+ +--------------------------------------------------------------- H010
+ |
+---------22--------------------------------------------------------------- H001
+ |
+ | /---------- H003
+ +---------------------------------------------------21
+ | \---------- H005
+ |
+ \--------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_20 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_20 --> node_19 8 1 1.000 2 ==> 1
+ 9 1 0.333 2 ==> 1
+ 10 1 0.500 2 ==> 1
+ node_18 --> node_17 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_15 --> H014 9 1 0.333 1 ==> 2
+ 10 1 0.500 1 ==> 2
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_17 --> node_16 11 1 0.500 2 --> 1
+ node_16 --> H008 9 1 0.333 1 ==> 2
+ node_18 --> H012 11 1 0.500 2 --> 1
+ node_19 --> H007 12 1 0.333 2 ==> 1
+ node_22 --> H010 5 1 1.000 2 ==> 1
+ node_22 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 38:
+
+Branch lengths and linkages for tree #38
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 21 23 2 2 2
+ 20 21 2 2 3
+ 18 20 2 2 2
+ 15 18 1 0 1
+H002 (1) 15 0 0 0
+H009 (12) 15 1 1 1
+ 17 18 0 0 1
+ 16 17 1 1 1
+H008 (4) 16 0 0 1
+H006 (13) 16 1 0 1
+H014 (5) 17 1 1 2
+ 19 20 1 0 1
+H007 (3) 19 1 1 1
+H012 (11) 19 1 1 1
+H011 (14) 19 0 0 0
+H013 (6) 21 0 0 0
+H010 (2) 23 1 1 1
+H001 (7) 23 2 2 2
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (10) 22 1 1 1
+H000 (9)* 23 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /---------- H002
+ /-------------------15
+ | \---------- H009
+ |
+ /---------18 /---------- H008
+ | | /---------16
+ | | | \---------- H006
+ | \--------17
+ /--------20 \--------------------- H014
+ | |
+ | | /---------- H007
+ | | |
+ /---------21 \------------------------------19---------- H012
+ | | |
+ | | \---------- H011
+ | |
+ | \---------------------------------------------------- H013
+ |
+ +--------------------------------------------------------------- H010
+---------23
+ +--------------------------------------------------------------- H001
+ |
+ | /---------- H003
+ +---------------------------------------------------22
+ | \---------- H005
+ |
+ \--------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_21 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_21 --> node_20 8 1 1.000 2 ==> 1
+ 10 1 0.500 2 ==> 1
+ node_20 --> node_18 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_18 --> node_15 9 1 0.333 2 --> 1
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_17 --> node_16 11 1 0.500 2 ==> 1
+ node_16 --> H006 9 1 0.333 2 --> 1
+ node_17 --> H014 10 1 0.500 1 ==> 2
+ node_20 --> node_19 9 1 0.333 2 --> 1
+ node_19 --> H007 12 1 0.333 2 ==> 1
+ node_19 --> H012 11 1 0.500 2 ==> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+ node_23 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 39:
+
+Branch lengths and linkages for tree #39
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 22 root 0 0 0
+ 20 22 2 2 2
+ 19 20 1 1 2
+ 17 19 2 2 2
+ 16 17 1 0 1
+ 15 16 1 1 1
+H002 (1) 15 0 0 0
+H009 (12) 15 1 1 1
+H006 (13) 15 1 1 1
+H008 (4) 16 1 1 1
+H014 (5) 17 0 0 1
+ 18 19 2 1 2
+H007 (3) 18 1 1 1
+H012 (11) 18 1 1 1
+H011 (14) 18 0 0 0
+H013 (6) 20 0 0 0
+H010 (2) 22 1 1 1
+H001 (7) 22 2 2 2
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (10) 21 1 1 1
+H000 (9)* 22 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /---------- H002
+ |
+ /---------15---------- H009
+ | |
+ /--------16 \---------- H006
+ | |
+ /---------17 \--------------------- H008
+ | |
+ | \------------------------------- H014
+ /--------19
+ | | /---------- H007
+ | | |
+ | \------------------------------18---------- H012
+ /---------20 |
+ | | \---------- H011
+ | |
+ | \---------------------------------------------------- H013
+ |
+ +--------------------------------------------------------------- H010
+ |
+---------22--------------------------------------------------------------- H001
+ |
+ | /---------- H003
+ +---------------------------------------------------21
+ | \---------- H005
+ |
+ \--------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_20 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_20 --> node_19 8 1 1.000 2 ==> 1
+ node_19 --> node_17 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_17 --> node_16 10 1 0.500 2 --> 1
+ node_16 --> node_15 9 1 0.500 2 ==> 1
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_15 --> H006 11 1 0.333 2 ==> 1
+ node_16 --> H008 11 1 0.333 2 ==> 1
+ node_19 --> node_18 9 1 0.500 2 ==> 1
+ 10 1 0.500 2 --> 1
+ node_18 --> H007 12 1 0.333 2 ==> 1
+ node_18 --> H012 11 1 0.333 2 ==> 1
+ node_22 --> H010 5 1 1.000 2 ==> 1
+ node_22 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 40:
+
+Branch lengths and linkages for tree #40
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 22 root 0 0 0
+ 20 22 2 2 2
+ 19 20 2 2 3
+ 17 19 2 2 2
+ 15 17 1 0 1
+H002 (1) 15 0 0 0
+H009 (12) 15 1 1 1
+H006 (13) 15 1 1 1
+ 16 17 0 0 1
+H008 (4) 16 1 1 1
+H014 (5) 16 1 1 1
+ 18 19 1 0 1
+H007 (3) 18 1 1 1
+H012 (11) 18 1 1 1
+H011 (14) 18 0 0 0
+H013 (6) 20 0 0 0
+H010 (2) 22 1 1 1
+H001 (7) 22 2 2 2
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (10) 21 1 1 1
+H000 (9)* 22 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /------------ H002
+ |
+ /----------15------------ H009
+ | |
+ | \------------ H006
+ /----------17
+ | | /------------ H008
+ | \----------16
+ | \------------ H014
+ /-----------19
+ | | /------------ H007
+ | | |
+ | \----------------------18------------ H012
+ /----------20 |
+ | | \------------ H011
+ | |
+ | \------------------------------------------------- H013
+ |
+ +------------------------------------------------------------- H010
+ |
+-----------22------------------------------------------------------------- H001
+ |
+ | /------------ H003
+ +-----------------------------------------------21
+ | \------------ H005
+ |
+ \------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_20 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_20 --> node_19 8 1 1.000 2 ==> 1
+ 10 1 0.500 2 ==> 1
+ node_19 --> node_17 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_17 --> node_15 9 1 0.500 2 --> 1
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_15 --> H006 11 1 0.333 2 ==> 1
+ node_16 --> H008 11 1 0.333 2 ==> 1
+ node_16 --> H014 10 1 0.500 1 ==> 2
+ node_19 --> node_18 9 1 0.500 2 --> 1
+ node_18 --> H007 12 1 0.333 2 ==> 1
+ node_18 --> H012 11 1 0.333 2 ==> 1
+ node_22 --> H010 5 1 1.000 2 ==> 1
+ node_22 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 41:
+
+Branch lengths and linkages for tree #41
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 21 root 0 0 0
+ 19 21 2 2 2
+ 18 19 2 2 2
+ 16 18 2 2 2
+ 15 16 1 1 1
+H002 (1) 15 0 0 0
+H009 (12) 15 1 1 1
+H006 (13) 15 1 1 1
+H008 (4) 16 1 1 1
+H014 (5) 16 1 1 1
+ 17 18 1 1 1
+H007 (3) 17 1 1 1
+H012 (11) 17 1 1 1
+H011 (14) 17 0 0 0
+H013 (6) 19 0 0 0
+H010 (2) 21 1 1 1
+H001 (7) 21 2 2 2
+ 20 21 1 1 1
+H003 (8) 20 1 1 1
+H005 (10) 20 1 1 1
+H000 (9)* 21 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /------------ H002
+ |
+ /----------15------------ H009
+ | |
+ | \------------ H006
+ /----------16
+ | +------------------------ H008
+ | |
+ | \------------------------ H014
+ /-----------18
+ | | /------------ H007
+ | | |
+ | \----------------------17------------ H012
+ /----------19 |
+ | | \------------ H011
+ | |
+ | \------------------------------------------------- H013
+ |
+ +------------------------------------------------------------- H010
+ |
+-----------21------------------------------------------------------------- H001
+ |
+ | /------------ H003
+ +-----------------------------------------------20
+ | \------------ H005
+ |
+ \------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_19 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_19 --> node_18 8 1 1.000 2 ==> 1
+ 10 1 0.500 2 ==> 1
+ node_18 --> node_16 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_16 --> node_15 9 1 0.500 2 ==> 1
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_15 --> H006 11 1 0.333 2 ==> 1
+ node_16 --> H008 11 1 0.333 2 ==> 1
+ node_16 --> H014 10 1 0.500 1 ==> 2
+ node_18 --> node_17 9 1 0.500 2 ==> 1
+ node_17 --> H007 12 1 0.333 2 ==> 1
+ node_17 --> H012 11 1 0.333 2 ==> 1
+ node_21 --> H010 5 1 1.000 2 ==> 1
+ node_21 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_21 --> node_20 3 1 1.000 2 ==> 1
+ node_20 --> H003 4 1 1.000 2 ==> 1
+ node_20 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 42:
+
+Branch lengths and linkages for tree #42
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 21 root 0 0 0
+ 19 21 2 2 2
+ 18 19 3 3 3
+ 17 18 1 1 1
+ 16 17 2 2 2
+ 15 16 1 1 1
+H002 (1) 15 0 0 0
+H014 (5) 15 2 2 2
+H009 (12) 15 1 1 1
+H008 (4) 16 1 1 1
+H006 (13) 16 0 0 0
+H012 (11) 17 0 0 0
+H007 (3) 18 1 1 1
+H011 (14) 18 0 0 0
+H013 (6) 19 0 0 0
+H010 (2) 21 1 1 1
+H001 (7) 21 2 2 2
+ 20 21 1 1 1
+H003 (8) 20 1 1 1
+H005 (10) 20 1 1 1
+H000 (9)* 21 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /---------- H002
+ |
+ /---------15---------- H014
+ | |
+ | \---------- H009
+ /--------16
+ | +--------------------- H008
+ | |
+ /---------17 \--------------------- H006
+ | |
+ | \------------------------------- H012
+ /--------18
+ | +------------------------------------------ H007
+ | |
+ /---------19 \------------------------------------------ H011
+ | |
+ | \---------------------------------------------------- H013
+ |
+ +--------------------------------------------------------------- H010
+ |
+---------21--------------------------------------------------------------- H001
+ |
+ | /---------- H003
+ +---------------------------------------------------20
+ | \---------- H005
+ |
+ \--------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_19 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_19 --> node_18 8 1 1.000 2 ==> 1
+ 9 1 0.333 2 ==> 1
+ 10 1 0.500 2 ==> 1
+ node_18 --> node_17 11 1 0.500 2 ==> 1
+ node_17 --> node_16 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_16 --> node_15 11 1 0.500 1 ==> 2
+ node_15 --> H014 9 1 0.333 1 ==> 2
+ 10 1 0.500 1 ==> 2
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_16 --> H008 9 1 0.333 1 ==> 2
+ node_18 --> H007 12 1 0.333 2 ==> 1
+ node_21 --> H010 5 1 1.000 2 ==> 1
+ node_21 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_21 --> node_20 3 1 1.000 2 ==> 1
+ node_20 --> H003 4 1 1.000 2 ==> 1
+ node_20 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 43:
+
+Branch lengths and linkages for tree #43
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 24 root 0 0 0
+ 22 24 2 2 2
+ 21 22 3 3 3
+ 20 21 1 1 2
+ 19 20 1 1 1
+ 18 19 0 0 1
+ 15 18 0 0 1
+H002 (1) 15 0 0 0
+H009 (12) 15 1 1 1
+ 17 18 2 2 2
+ 16 17 0 0 1
+H007 (3) 16 1 1 1
+H011 (14) 16 0 0 0
+H012 (11) 17 1 0 1
+H006 (13) 19 1 0 1
+H008 (4) 20 1 0 1
+H014 (5) 21 0 0 0
+H013 (6) 22 0 0 0
+H010 (2) 24 1 1 1
+H001 (7) 24 2 2 2
+ 23 24 1 1 1
+H003 (8) 23 1 1 1
+H005 (10) 23 1 1 1
+H000 (9)* 24 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /-------- H002
+ /--------------15
+ | \-------- H009
+ |
+ /------18 /-------- H007
+ | | /------16
+ | | | \-------- H011
+ /-------19 \------17
+ | | \---------------- H012
+ | |
+ /------20 \-------------------------------- H006
+ | |
+ /------21 \----------------------------------------- H008
+ | |
+ /------22 \------------------------------------------------- H014
+ | |
+ | \--------------------------------------------------------- H013
+ |
+ +----------------------------------------------------------------- H010
+ |
+-------24----------------------------------------------------------------- H001
+ |
+ | /-------- H003
+ +-------------------------------------------------------23
+ | \-------- H005
+ |
+ \----------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_24 --> node_22 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_22 --> node_21 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_21 --> node_20 10 1 1.000 2 ==> 1
+ node_20 --> node_19 9 1 1.000 2 ==> 1
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_18 --> node_17 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 ==> 1
+ node_17 --> H012 11 1 0.333 2 --> 1
+ node_19 --> H006 11 1 0.333 2 --> 1
+ node_20 --> H008 11 1 0.333 2 --> 1
+ node_24 --> H010 5 1 1.000 2 ==> 1
+ node_24 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_24 --> node_23 3 1 1.000 2 ==> 1
+ node_23 --> H003 4 1 1.000 2 ==> 1
+ node_23 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 44:
+
+Branch lengths and linkages for tree #44
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 24 root 0 0 0
+ 22 24 2 2 2
+ 21 22 3 3 3
+ 20 21 1 1 2
+ 15 20 1 0 1
+H002 (1) 15 0 0 0
+H009 (12) 15 1 1 1
+ 19 20 1 1 1
+ 18 19 1 0 1
+ 17 18 2 2 2
+ 16 17 1 1 1
+H007 (3) 16 1 1 1
+H011 (14) 16 0 0 0
+H012 (11) 17 0 0 0
+H006 (13) 18 0 0 0
+H008 (4) 19 0 0 1
+H014 (5) 21 0 0 0
+H013 (6) 22 0 0 0
+H010 (2) 24 1 1 1
+H001 (7) 24 2 2 2
+ 23 24 1 1 1
+H003 (8) 23 1 1 1
+H005 (10) 23 1 1 1
+H000 (9)* 24 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /-------- H002
+ /-------------------------------15
+ | \-------- H009
+ |
+ | /-------- H007
+ | /------16
+ /------20 | \-------- H011
+ | | /------17
+ | | | \---------------- H012
+ | | /------18
+ /------21 | | \------------------------ H006
+ | | \-------19
+ | | \-------------------------------- H008
+ /------22 |
+ | | \------------------------------------------------- H014
+ | |
+ | \--------------------------------------------------------- H013
+ |
+ +----------------------------------------------------------------- H010
+ |
+-------24----------------------------------------------------------------- H001
+ |
+ | /-------- H003
+ +-------------------------------------------------------23
+ | \-------- H005
+ |
+ \----------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_24 --> node_22 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_22 --> node_21 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_21 --> node_20 10 1 1.000 2 ==> 1
+ node_20 --> node_15 9 1 0.500 2 --> 1
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_20 --> node_19 11 1 0.500 2 ==> 1
+ node_19 --> node_18 9 1 0.500 2 --> 1
+ node_18 --> node_17 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_17 --> node_16 11 1 0.500 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 ==> 1
+ node_24 --> H010 5 1 1.000 2 ==> 1
+ node_24 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_24 --> node_23 3 1 1.000 2 ==> 1
+ node_23 --> H003 4 1 1.000 2 ==> 1
+ node_23 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 45:
+
+Branch lengths and linkages for tree #45
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 24 root 0 0 0
+ 22 24 2 2 2
+ 21 22 3 3 3
+ 20 21 1 1 2
+ 19 20 1 1 1
+ 15 19 0 0 1
+H002 (1) 15 0 0 0
+H009 (12) 15 1 1 1
+ 18 19 0 0 1
+ 17 18 2 2 2
+ 16 17 0 0 1
+H007 (3) 16 1 1 1
+H011 (14) 16 0 0 0
+H012 (11) 17 1 0 1
+H006 (13) 18 1 0 1
+H008 (4) 20 1 0 1
+H014 (5) 21 0 0 0
+H013 (6) 22 0 0 0
+H010 (2) 24 1 1 1
+H001 (7) 24 2 2 2
+ 23 24 1 1 1
+H003 (8) 23 1 1 1
+H005 (10) 23 1 1 1
+H000 (9)* 24 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /-------- H002
+ /----------------------15
+ | \-------- H009
+ |
+ | /-------- H007
+ /-------19 /------16
+ | | | \-------- H011
+ | | /------17
+ | | | \---------------- H012
+ /------20 \------18
+ | | \------------------------ H006
+ | |
+ /------21 \----------------------------------------- H008
+ | |
+ /------22 \------------------------------------------------- H014
+ | |
+ | \--------------------------------------------------------- H013
+ |
+ +----------------------------------------------------------------- H010
+ |
+-------24----------------------------------------------------------------- H001
+ |
+ | /-------- H003
+ +-------------------------------------------------------23
+ | \-------- H005
+ |
+ \----------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_24 --> node_22 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_22 --> node_21 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_21 --> node_20 10 1 1.000 2 ==> 1
+ node_20 --> node_19 9 1 1.000 2 ==> 1
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_18 --> node_17 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 ==> 1
+ node_17 --> H012 11 1 0.333 2 --> 1
+ node_18 --> H006 11 1 0.333 2 --> 1
+ node_20 --> H008 11 1 0.333 2 --> 1
+ node_24 --> H010 5 1 1.000 2 ==> 1
+ node_24 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_24 --> node_23 3 1 1.000 2 ==> 1
+ node_23 --> H003 4 1 1.000 2 ==> 1
+ node_23 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 46:
+
+Branch lengths and linkages for tree #46
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 21 23 2 2 2
+ 20 21 3 3 3
+ 19 20 2 2 2
+H002 (1) 19 0 0 0
+ 18 19 0 0 1
+ 16 18 2 2 2
+ 15 16 0 0 1
+H007 (3) 15 1 1 1
+H011 (14) 15 0 0 0
+H012 (11) 16 1 0 1
+ 17 18 1 0 1
+H008 (4) 17 1 1 1
+H006 (13) 17 0 0 0
+H009 (12) 19 1 1 1
+H014 (5) 20 0 0 0
+H001 (7) 21 0 0 0
+H010 (2) 23 1 1 1
+H013 (6) 23 2 2 2
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (10) 22 1 1 1
+H000 (9)* 23 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /------------------------------------- H002
+ |
+ | /--------- H007
+ | /-------15
+ | | \--------- H011
+ | /-------16
+ /-------19 | \------------------ H012
+ | +--------18
+ | | | /--------- H008
+ | | \----------------17
+ /-------20 | \--------- H006
+ | | |
+ | | \------------------------------------- H009
+ /-------21 |
+ | | \---------------------------------------------- H014
+ | |
+ | \------------------------------------------------------- H001
+ |
+ +---------------------------------------------------------------- H010
+ |
+--------23---------------------------------------------------------------- H013
+ |
+ | /--------- H003
+ +-----------------------------------------------------22
+ | \--------- H005
+ |
+ \---------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_21 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_21 --> node_20 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_20 --> node_19 9 1 0.500 2 ==> 1
+ 10 1 1.000 2 ==> 1
+ node_18 --> node_16 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ node_16 --> H012 11 1 0.500 2 --> 1
+ node_18 --> node_17 11 1 0.500 2 --> 1
+ node_17 --> H008 9 1 0.500 1 ==> 2
+ node_19 --> H009 12 1 0.333 2 ==> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+ node_23 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 47:
+
+Branch lengths and linkages for tree #47
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 24 root 0 0 0
+ 22 24 0 0 2
+ 21 22 2 2 2
+ 20 21 3 1 3
+ 19 20 2 2 2
+H002 (1) 19 0 0 0
+ 18 19 0 0 1
+ 16 18 2 2 2
+ 15 16 0 0 1
+H007 (3) 15 1 1 1
+H011 (14) 15 0 0 0
+H012 (11) 16 1 0 1
+ 17 18 1 0 1
+H008 (4) 17 1 1 1
+H006 (13) 17 0 0 0
+H009 (12) 19 1 1 1
+H014 (5) 20 0 0 0
+H001 (7) 21 0 0 2
+H013 (6) 22 2 0 2
+H010 (2) 24 1 1 1
+ 23 24 1 1 1
+H003 (8) 23 1 1 1
+H005 (10) 23 1 1 1
+H000 (9)* 24 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /-------------------------------- H002
+ |
+ | /-------- H007
+ | /------15
+ | | \-------- H011
+ | /------16
+ /-------19 | \---------------- H012
+ | +------18
+ | | | /-------- H008
+ | | \--------------17
+ /------20 | \-------- H006
+ | | |
+ | | \-------------------------------- H009
+ /------21 |
+ | | \----------------------------------------- H014
+ | |
+ /------22 \------------------------------------------------- H001
+ | |
+ | \--------------------------------------------------------- H013
+ |
+ +----------------------------------------------------------------- H010
+-------24
+ | /-------- H003
+ +-------------------------------------------------------23
+ | \-------- H005
+ |
+ \----------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_21 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_21 --> node_20 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_20 --> node_19 9 1 0.500 2 ==> 1
+ 10 1 1.000 2 ==> 1
+ node_18 --> node_16 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ node_16 --> H012 11 1 0.500 2 --> 1
+ node_18 --> node_17 11 1 0.500 2 --> 1
+ node_17 --> H008 9 1 0.500 1 ==> 2
+ node_19 --> H009 12 1 0.333 2 ==> 1
+ node_22 --> H013 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ node_24 --> H010 5 1 1.000 2 ==> 1
+ node_24 --> node_23 3 1 1.000 2 ==> 1
+ node_23 --> H003 4 1 1.000 2 ==> 1
+ node_23 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 48:
+
+Branch lengths and linkages for tree #48
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 22 root 0 0 0
+ 20 22 2 2 2
+ 19 20 3 3 3
+ 18 19 1 1 2
+ 17 18 1 1 1
+ 16 17 0 0 1
+H002 (1) 16 0 0 0
+ 15 16 2 2 2
+H007 (3) 15 1 1 1
+H012 (11) 15 1 1 1
+H011 (14) 15 0 0 0
+H009 (12) 16 1 1 1
+H006 (13) 17 1 0 1
+H008 (4) 18 1 0 1
+H014 (5) 19 0 0 0
+H013 (6) 20 0 0 0
+H010 (2) 22 1 1 1
+H001 (7) 22 2 2 2
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (10) 21 1 1 1
+H000 (9)* 22 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /------------------ H002
+ |
+ | /--------- H007
+ | |
+ /-------16-------15--------- H012
+ | | |
+ | | \--------- H011
+ /--------17 |
+ | | \------------------ H009
+ | |
+ /-------18 \--------------------------- H006
+ | |
+ /-------19 \------------------------------------- H008
+ | |
+ /-------20 \---------------------------------------------- H014
+ | |
+ | \------------------------------------------------------- H013
+ |
+ +---------------------------------------------------------------- H010
+ |
+--------22---------------------------------------------------------------- H001
+ |
+ | /--------- H003
+ +-----------------------------------------------------21
+ | \--------- H005
+ |
+ \---------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_20 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_20 --> node_19 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_19 --> node_18 10 1 1.000 2 ==> 1
+ node_18 --> node_17 9 1 1.000 2 ==> 1
+ node_16 --> node_15 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ node_15 --> H012 11 1 0.333 2 ==> 1
+ node_16 --> H009 12 1 0.333 2 ==> 1
+ node_17 --> H006 11 1 0.333 2 --> 1
+ node_18 --> H008 11 1 0.333 2 --> 1
+ node_22 --> H010 5 1 1.000 2 ==> 1
+ node_22 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 49:
+
+Branch lengths and linkages for tree #49
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 24 root 0 0 0
+ 22 24 2 2 2
+ 21 22 3 3 3
+ 20 21 1 1 2
+ 18 20 1 0 1
+H002 (1) 18 0 0 0
+ 17 18 0 0 1
+ 16 17 2 2 2
+H007 (3) 16 1 0 1
+ 15 16 0 0 1
+H012 (11) 15 1 1 1
+H011 (14) 15 0 0 0
+H009 (12) 17 1 0 1
+ 19 20 1 1 1
+H008 (4) 19 0 0 1
+H006 (13) 19 1 0 1
+H014 (5) 21 0 0 0
+H001 (7) 22 0 0 0
+H010 (2) 24 1 1 1
+H013 (6) 24 2 2 2
+ 23 24 1 1 1
+H003 (8) 23 1 1 1
+H005 (10) 23 1 1 1
+H000 (9)* 24 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /-------------------------------- H002
+ |
+ | /---------------- H007
+ /-------18 |
+ | | /------16 /-------- H012
+ | | | \------15
+ | \------17 \-------- H011
+ /------20 |
+ | | \------------------------ H009
+ | |
+ | | /-------- H008
+ /------21 \-------------------------------19
+ | | \-------- H006
+ | |
+ /------22 \------------------------------------------------- H014
+ | |
+ | \--------------------------------------------------------- H001
+ |
+ +----------------------------------------------------------------- H010
+ |
+-------24----------------------------------------------------------------- H013
+ |
+ | /-------- H003
+ +-------------------------------------------------------23
+ | \-------- H005
+ |
+ \----------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_24 --> node_22 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_22 --> node_21 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_21 --> node_20 10 1 1.000 2 ==> 1
+ node_20 --> node_18 9 1 0.500 2 --> 1
+ node_17 --> node_16 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 --> 1
+ node_15 --> H012 11 1 0.500 2 ==> 1
+ node_17 --> H009 12 1 0.333 2 --> 1
+ node_20 --> node_19 11 1 0.500 2 ==> 1
+ node_19 --> H006 9 1 0.500 2 --> 1
+ node_24 --> H010 5 1 1.000 2 ==> 1
+ node_24 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ node_24 --> node_23 3 1 1.000 2 ==> 1
+ node_23 --> H003 4 1 1.000 2 ==> 1
+ node_23 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 50:
+
+Branch lengths and linkages for tree #50
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 21 23 2 2 2
+ 20 21 3 3 3
+ 19 20 0 0 1
+ 18 19 2 2 2
+ 17 18 0 0 1
+H002 (1) 17 0 0 0
+ 16 17 0 0 1
+ 15 16 1 1 1
+H008 (4) 15 1 0 1
+H006 (13) 15 0 0 1
+H014 (5) 16 2 1 2
+H009 (12) 18 1 0 1
+H007 (3) 19 1 0 1
+H012 (11) 20 1 1 1
+H011 (14) 20 0 0 0
+H013 (6) 21 0 0 0
+H010 (2) 23 1 1 1
+H001 (7) 23 2 2 2
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (10) 22 1 1 1
+H000 (9)* 23 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /------------------------ H002
+ |
+ | /-------- H008
+ /------17 /------15
+ | | | \-------- H006
+ | \------16
+ /-------18 \---------------- H014
+ | |
+ /------19 \-------------------------------- H009
+ | |
+ | \----------------------------------------- H007
+ /------20
+ | +------------------------------------------------- H012
+ | |
+ /------21 \------------------------------------------------- H011
+ | |
+ | \--------------------------------------------------------- H013
+ |
+ +----------------------------------------------------------------- H010
+ |
+-------23----------------------------------------------------------------- H001
+ |
+ | /-------- H003
+ +-------------------------------------------------------22
+ | \-------- H005
+ |
+ \----------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_21 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_21 --> node_20 8 1 1.000 2 ==> 1
+ 9 1 0.333 2 ==> 1
+ 10 1 0.500 2 ==> 1
+ node_19 --> node_18 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_16 --> node_15 11 1 0.500 2 ==> 1
+ node_15 --> H008 9 1 0.333 1 --> 2
+ node_16 --> H014 9 1 0.333 1 --> 2
+ 10 1 0.500 1 ==> 2
+ node_18 --> H009 12 1 0.333 2 --> 1
+ node_19 --> H007 12 1 0.333 2 --> 1
+ node_20 --> H012 11 1 0.500 2 ==> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+ node_23 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 51:
+
+Branch lengths and linkages for tree #51
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 25 root 0 0 0
+ 23 25 0 0 2
+ 22 23 2 2 2
+ 21 22 3 1 3
+ 20 21 1 1 2
+ 18 20 1 0 1
+H002 (1) 18 0 0 0
+ 17 18 0 0 1
+ 16 17 2 2 2
+H007 (3) 16 1 0 1
+ 15 16 0 0 1
+H012 (11) 15 1 1 1
+H011 (14) 15 0 0 0
+H009 (12) 17 1 0 1
+ 19 20 1 1 1
+H008 (4) 19 0 0 1
+H006 (13) 19 1 0 1
+H014 (5) 21 0 0 0
+H001 (7) 22 0 0 2
+H013 (6) 23 2 0 2
+H010 (2) 25 1 1 1
+ 24 25 1 1 1
+H003 (8) 24 1 1 1
+H005 (10) 24 1 1 1
+H000 (9)* 25 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /----------------------------- H002
+ |
+ | /--------------- H007
+ /-----18 |
+ | | /-----16 /------- H012
+ | | | \------15
+ | \-----17 \------- H011
+ /------20 |
+ | | \---------------------- H009
+ | |
+ | | /------- H008
+ /-----21 \---------------------------19
+ | | \------- H006
+ | |
+ /-----22 \-------------------------------------------- H014
+ | |
+ /------23 \--------------------------------------------------- H001
+ | |
+ | \---------------------------------------------------------- H013
+ |
+ +------------------------------------------------------------------ H010
+------25
+ | /------- H003
+ +---------------------------------------------------------24
+ | \------- H005
+ |
+ \------------------------------------------------------------------ H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_22 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_22 --> node_21 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_21 --> node_20 10 1 1.000 2 ==> 1
+ node_20 --> node_18 9 1 0.500 2 --> 1
+ node_17 --> node_16 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 --> 1
+ node_15 --> H012 11 1 0.500 2 ==> 1
+ node_17 --> H009 12 1 0.333 2 --> 1
+ node_20 --> node_19 11 1 0.500 2 ==> 1
+ node_19 --> H006 9 1 0.500 2 --> 1
+ node_23 --> H013 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ node_25 --> H010 5 1 1.000 2 ==> 1
+ node_25 --> node_24 3 1 1.000 2 ==> 1
+ node_24 --> H003 4 1 1.000 2 ==> 1
+ node_24 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 52:
+
+Branch lengths and linkages for tree #52
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 21 23 2 2 2
+ 20 21 3 3 3
+ 19 20 0 0 1
+ 18 19 2 2 2
+ 17 18 0 0 1
+H002 (1) 17 0 0 0
+ 16 17 0 0 1
+ 15 16 1 1 1
+H008 (4) 15 1 0 1
+H014 (5) 15 1 1 2
+H006 (13) 16 1 0 1
+H009 (12) 18 1 0 1
+H007 (3) 19 1 0 1
+H012 (11) 20 1 1 1
+H011 (14) 20 0 0 0
+H013 (6) 21 0 0 0
+H010 (2) 23 1 1 1
+H001 (7) 23 2 2 2
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (10) 22 1 1 1
+H000 (9)* 23 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /------------------------ H002
+ |
+ | /-------- H008
+ /------17 /------15
+ | | | \-------- H014
+ | \------16
+ /-------18 \---------------- H006
+ | |
+ /------19 \-------------------------------- H009
+ | |
+ | \----------------------------------------- H007
+ /------20
+ | +------------------------------------------------- H012
+ | |
+ /------21 \------------------------------------------------- H011
+ | |
+ | \--------------------------------------------------------- H013
+ |
+ +----------------------------------------------------------------- H010
+ |
+-------23----------------------------------------------------------------- H001
+ |
+ | /-------- H003
+ +-------------------------------------------------------22
+ | \-------- H005
+ |
+ \----------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_21 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_21 --> node_20 8 1 1.000 2 ==> 1
+ 9 1 0.500 2 ==> 1
+ 10 1 0.500 2 ==> 1
+ node_19 --> node_18 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_16 --> node_15 9 1 0.500 1 ==> 2
+ node_15 --> H008 11 1 0.333 2 --> 1
+ node_15 --> H014 10 1 0.500 1 ==> 2
+ node_16 --> H006 11 1 0.333 2 --> 1
+ node_18 --> H009 12 1 0.333 2 --> 1
+ node_19 --> H007 12 1 0.333 2 --> 1
+ node_20 --> H012 11 1 0.333 2 ==> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+ node_23 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 53:
+
+Branch lengths and linkages for tree #53
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 24 root 0 0 0
+ 22 24 2 2 2
+ 21 22 3 3 3
+ 20 21 1 1 2
+ 19 20 1 1 1
+ 18 19 0 0 1
+H002 (1) 18 0 0 0
+ 17 18 0 0 1
+ 16 17 2 2 2
+H007 (3) 16 1 0 1
+ 15 16 0 0 1
+H012 (11) 15 1 1 1
+H011 (14) 15 0 0 0
+H009 (12) 17 1 0 1
+H006 (13) 19 1 0 1
+H008 (4) 20 1 0 1
+H014 (5) 21 0 0 0
+H001 (7) 22 0 0 0
+H010 (2) 24 1 1 1
+H013 (6) 24 2 2 2
+ 23 24 1 1 1
+H003 (8) 23 1 1 1
+H005 (10) 23 1 1 1
+H000 (9)* 24 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /----------------------------- H002
+ |
+ | /--------------- H007
+ /-----18 |
+ | | /-----16 /------- H012
+ | | | \------15
+ | \-----17 \------- H011
+ /------19 |
+ | | \---------------------- H009
+ | |
+ /-----20 \------------------------------------ H006
+ | |
+ /-----21 \-------------------------------------------- H008
+ | |
+ /------22 \--------------------------------------------------- H014
+ | |
+ | \---------------------------------------------------------- H001
+ |
+ +------------------------------------------------------------------ H010
+ |
+------24------------------------------------------------------------------ H013
+ |
+ | /------- H003
+ +---------------------------------------------------------23
+ | \------- H005
+ |
+ \------------------------------------------------------------------ H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_24 --> node_22 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_22 --> node_21 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_21 --> node_20 10 1 1.000 2 ==> 1
+ node_20 --> node_19 9 1 1.000 2 ==> 1
+ node_17 --> node_16 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 --> 1
+ node_15 --> H012 11 1 0.333 2 ==> 1
+ node_17 --> H009 12 1 0.333 2 --> 1
+ node_19 --> H006 11 1 0.333 2 --> 1
+ node_20 --> H008 11 1 0.333 2 --> 1
+ node_24 --> H010 5 1 1.000 2 ==> 1
+ node_24 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ node_24 --> node_23 3 1 1.000 2 ==> 1
+ node_23 --> H003 4 1 1.000 2 ==> 1
+ node_23 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 54:
+
+Branch lengths and linkages for tree #54
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 21 23 2 2 2
+ 20 21 3 3 3
+ 19 20 1 1 2
+ 18 19 1 1 1
+ 15 18 0 0 1
+H002 (1) 15 0 0 0
+H009 (12) 15 1 1 1
+ 17 18 2 2 2
+ 16 17 0 0 1
+H007 (3) 16 1 1 1
+H011 (14) 16 0 0 0
+H012 (11) 17 1 0 1
+H006 (13) 18 1 0 1
+H008 (4) 19 1 0 1
+H014 (5) 20 0 0 0
+H013 (6) 21 0 0 0
+H010 (2) 23 1 1 1
+H001 (7) 23 2 2 2
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (10) 22 1 1 1
+H000 (9)* 23 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /--------- H002
+ /----------------15
+ | \--------- H009
+ |
+ | /--------- H007
+ | /-------16
+ /--------18 | \--------- H011
+ | +-------17
+ | | \------------------ H012
+ /-------19 |
+ | | \--------------------------- H006
+ | |
+ /-------20 \------------------------------------- H008
+ | |
+ /-------21 \---------------------------------------------- H014
+ | |
+ | \------------------------------------------------------- H013
+ |
+ +---------------------------------------------------------------- H010
+ |
+--------23---------------------------------------------------------------- H001
+ |
+ | /--------- H003
+ +-----------------------------------------------------22
+ | \--------- H005
+ |
+ \---------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_21 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_21 --> node_20 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_20 --> node_19 10 1 1.000 2 ==> 1
+ node_19 --> node_18 9 1 1.000 2 ==> 1
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_18 --> node_17 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 ==> 1
+ node_17 --> H012 11 1 0.333 2 --> 1
+ node_18 --> H006 11 1 0.333 2 --> 1
+ node_19 --> H008 11 1 0.333 2 --> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+ node_23 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 55:
+
+Branch lengths and linkages for tree #55
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 25 root 0 0 0
+ 23 25 0 0 2
+ 22 23 2 2 2
+ 21 22 3 1 3
+ 20 21 1 1 2
+ 19 20 1 1 1
+ 18 19 0 0 1
+H002 (1) 18 0 0 0
+ 17 18 0 0 1
+ 16 17 2 2 2
+H007 (3) 16 1 0 1
+ 15 16 0 0 1
+H012 (11) 15 1 1 1
+H011 (14) 15 0 0 0
+H009 (12) 17 1 0 1
+H006 (13) 19 1 0 1
+H008 (4) 20 1 0 1
+H014 (5) 21 0 0 0
+H013 (6) 22 0 0 2
+H001 (7) 23 2 0 2
+H010 (2) 25 1 1 1
+ 24 25 1 1 1
+H003 (8) 24 1 1 1
+H005 (10) 24 1 1 1
+H000 (9)* 25 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /--------------------------- H002
+ |
+ | /------------- H007
+ /----18 |
+ | | /-----16 /------- H012
+ | | | \----15
+ | \-----17 \------- H011
+ /-----19 |
+ | | \-------------------- H009
+ | |
+ /----20 \--------------------------------- H006
+ | |
+ /-----21 \---------------------------------------- H008
+ | |
+ /-----22 \---------------------------------------------- H014
+ | |
+ /----23 \----------------------------------------------------- H013
+ | |
+ | \------------------------------------------------------------ H001
+ |
+ +------------------------------------------------------------------ H010
+------25
+ | /------- H003
+ +---------------------------------------------------------24
+ | \------- H005
+ |
+ \------------------------------------------------------------------ H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_22 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_22 --> node_21 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_21 --> node_20 10 1 1.000 2 ==> 1
+ node_20 --> node_19 9 1 1.000 2 ==> 1
+ node_17 --> node_16 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 --> 1
+ node_15 --> H012 11 1 0.333 2 ==> 1
+ node_17 --> H009 12 1 0.333 2 --> 1
+ node_19 --> H006 11 1 0.333 2 --> 1
+ node_20 --> H008 11 1 0.333 2 --> 1
+ node_23 --> H001 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ node_25 --> H010 5 1 1.000 2 ==> 1
+ node_25 --> node_24 3 1 1.000 2 ==> 1
+ node_24 --> H003 4 1 1.000 2 ==> 1
+ node_24 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 56:
+
+Branch lengths and linkages for tree #56
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 25 root 0 0 0
+ 23 25 0 0 2
+ 22 23 2 2 2
+ 21 22 3 1 3
+ 20 21 1 1 2
+ 19 20 1 1 1
+ 18 19 0 0 1
+H002 (1) 18 0 0 0
+ 17 18 0 0 1
+ 16 17 2 2 2
+H007 (3) 16 1 0 1
+ 15 16 0 0 1
+H012 (11) 15 1 1 1
+H011 (14) 15 0 0 0
+H009 (12) 17 1 0 1
+H006 (13) 19 1 0 1
+H008 (4) 20 1 0 1
+H014 (5) 21 0 0 0
+H001 (7) 22 0 0 2
+H013 (6) 23 2 0 2
+H010 (2) 25 1 1 1
+ 24 25 1 1 1
+H003 (8) 24 1 1 1
+H005 (10) 24 1 1 1
+H000 (9)* 25 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /--------------------------- H002
+ |
+ | /------------- H007
+ /----18 |
+ | | /-----16 /------- H012
+ | | | \----15
+ | \-----17 \------- H011
+ /-----19 |
+ | | \-------------------- H009
+ | |
+ /----20 \--------------------------------- H006
+ | |
+ /-----21 \---------------------------------------- H008
+ | |
+ /-----22 \---------------------------------------------- H014
+ | |
+ /----23 \----------------------------------------------------- H001
+ | |
+ | \------------------------------------------------------------ H013
+ |
+ +------------------------------------------------------------------ H010
+------25
+ | /------- H003
+ +---------------------------------------------------------24
+ | \------- H005
+ |
+ \------------------------------------------------------------------ H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_22 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_22 --> node_21 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_21 --> node_20 10 1 1.000 2 ==> 1
+ node_20 --> node_19 9 1 1.000 2 ==> 1
+ node_17 --> node_16 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 --> 1
+ node_15 --> H012 11 1 0.333 2 ==> 1
+ node_17 --> H009 12 1 0.333 2 --> 1
+ node_19 --> H006 11 1 0.333 2 --> 1
+ node_20 --> H008 11 1 0.333 2 --> 1
+ node_23 --> H013 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ node_25 --> H010 5 1 1.000 2 ==> 1
+ node_25 --> node_24 3 1 1.000 2 ==> 1
+ node_24 --> H003 4 1 1.000 2 ==> 1
+ node_24 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 57:
+
+Branch lengths and linkages for tree #57
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 21 23 2 2 2
+ 20 21 3 3 3
+ 19 20 1 1 1
+ 18 19 2 2 2
+ 17 18 0 0 1
+ 16 17 1 1 1
+ 15 16 0 0 1
+H002 (1) 15 0 0 0
+H009 (12) 15 1 1 1
+H014 (5) 16 2 1 2
+H008 (4) 17 1 0 1
+H006 (13) 18 0 0 0
+H012 (11) 19 0 0 0
+H007 (3) 20 1 1 1
+H011 (14) 20 0 0 0
+H013 (6) 21 0 0 0
+H010 (2) 23 1 1 1
+H001 (7) 23 2 2 2
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (10) 22 1 1 1
+H000 (9)* 23 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /-------- H002
+ /------15
+ | \-------- H009
+ /------16
+ | \---------------- H014
+ /------17
+ | \------------------------ H008
+ /-------18
+ | \-------------------------------- H006
+ /------19
+ | \----------------------------------------- H012
+ |
+ /------20------------------------------------------------- H007
+ | |
+ /------21 \------------------------------------------------- H011
+ | |
+ | \--------------------------------------------------------- H013
+ |
+ +----------------------------------------------------------------- H010
+ |
+-------23----------------------------------------------------------------- H001
+ |
+ | /-------- H003
+ +-------------------------------------------------------22
+ | \-------- H005
+ |
+ \----------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_21 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_21 --> node_20 8 1 1.000 2 ==> 1
+ 9 1 0.333 2 ==> 1
+ 10 1 0.500 2 ==> 1
+ node_20 --> node_19 11 1 0.500 2 ==> 1
+ node_19 --> node_18 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_17 --> node_16 11 1 0.500 1 ==> 2
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_16 --> H014 9 1 0.333 1 --> 2
+ 10 1 0.500 1 ==> 2
+ node_17 --> H008 9 1 0.333 1 --> 2
+ node_20 --> H007 12 1 0.333 2 ==> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+ node_23 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 58:
+
+Branch lengths and linkages for tree #58
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 20 root 0 0 0
+ 18 20 2 2 2
+ 17 18 3 3 3
+ 16 17 2 2 2
+H002 (1) 16 0 0 0
+ 15 16 1 1 1
+H008 (4) 15 1 1 1
+H014 (5) 15 1 1 1
+H009 (12) 16 1 1 1
+H006 (13) 16 1 1 1
+H007 (3) 17 1 1 1
+H012 (11) 17 1 1 1
+H011 (14) 17 0 0 0
+H013 (6) 18 0 0 0
+H010 (2) 20 1 1 1
+H001 (7) 20 2 2 2
+ 19 20 1 1 1
+H003 (8) 19 1 1 1
+H005 (10) 19 1 1 1
+H000 (9)* 20 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /------------------------ H002
+ |
+ | /------------ H008
+ +----------15
+ /----------16 \------------ H014
+ | |
+ | +------------------------ H009
+ | |
+ | \------------------------ H006
+ /-----------17
+ | +------------------------------------ H007
+ | |
+ | +------------------------------------ H012
+ /----------18 |
+ | | \------------------------------------ H011
+ | |
+ | \------------------------------------------------- H013
+ |
+ +------------------------------------------------------------- H010
+ |
+-----------20------------------------------------------------------------- H001
+ |
+ | /------------ H003
+ +-----------------------------------------------19
+ | \------------ H005
+ |
+ \------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_20 --> node_18 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_18 --> node_17 8 1 1.000 2 ==> 1
+ 9 1 0.500 2 ==> 1
+ 10 1 0.500 2 ==> 1
+ node_17 --> node_16 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_16 --> node_15 9 1 0.500 1 ==> 2
+ node_15 --> H008 11 1 0.333 2 ==> 1
+ node_15 --> H014 10 1 0.500 1 ==> 2
+ node_16 --> H009 12 1 0.333 2 ==> 1
+ node_16 --> H006 11 1 0.333 2 ==> 1
+ node_17 --> H007 12 1 0.333 2 ==> 1
+ node_17 --> H012 11 1 0.333 2 ==> 1
+ node_20 --> H010 5 1 1.000 2 ==> 1
+ node_20 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_20 --> node_19 3 1 1.000 2 ==> 1
+ node_19 --> H003 4 1 1.000 2 ==> 1
+ node_19 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 59:
+
+Branch lengths and linkages for tree #59
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 22 root 0 0 0
+ 20 22 2 2 2
+ 19 20 3 3 3
+ 18 19 1 1 2
+ 16 18 1 0 1
+H002 (1) 16 0 0 0
+ 15 16 2 2 2
+H007 (3) 15 1 1 1
+H012 (11) 15 1 1 1
+H011 (14) 15 0 0 0
+H009 (12) 16 1 1 1
+ 17 18 1 1 1
+H008 (4) 17 0 0 1
+H006 (13) 17 1 0 1
+H014 (5) 19 0 0 0
+H001 (7) 20 0 0 0
+H010 (2) 22 1 1 1
+H013 (6) 22 2 2 2
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (10) 21 1 1 1
+H000 (9)* 22 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /--------------------- H002
+ |
+ | /---------- H007
+ | |
+ /--------16---------15---------- H012
+ | | |
+ | | \---------- H011
+ | |
+ /---------18 \--------------------- H009
+ | |
+ | | /---------- H008
+ /--------19 \-------------------17
+ | | \---------- H006
+ | |
+ /---------20 \------------------------------------------ H014
+ | |
+ | \---------------------------------------------------- H001
+ |
+ +--------------------------------------------------------------- H010
+ |
+---------22--------------------------------------------------------------- H013
+ |
+ | /---------- H003
+ +---------------------------------------------------21
+ | \---------- H005
+ |
+ \--------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_20 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_20 --> node_19 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_19 --> node_18 10 1 1.000 2 ==> 1
+ node_18 --> node_16 9 1 0.500 2 --> 1
+ node_16 --> node_15 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ node_15 --> H012 11 1 0.500 2 ==> 1
+ node_16 --> H009 12 1 0.333 2 ==> 1
+ node_18 --> node_17 11 1 0.500 2 ==> 1
+ node_17 --> H006 9 1 0.500 2 --> 1
+ node_22 --> H010 5 1 1.000 2 ==> 1
+ node_22 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 60:
+
+Branch lengths and linkages for tree #60
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 21 23 2 2 2
+ 20 21 3 3 3
+ 19 20 1 1 1
+ 18 19 1 1 1
+H002 (1) 18 0 0 0
+ 17 18 0 0 1
+ 16 17 2 2 2
+H007 (3) 16 1 0 1
+ 15 16 0 0 1
+H012 (11) 15 1 1 1
+H011 (14) 15 0 0 0
+H009 (12) 17 1 0 1
+H006 (13) 18 1 1 1
+H008 (4) 19 1 1 1
+H014 (5) 20 0 0 0
+H001 (7) 21 0 0 0
+H010 (2) 23 1 1 1
+H013 (6) 23 2 2 2
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (10) 22 1 1 1
+H000 (9)* 23 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /-------------------------------- H002
+ |
+ | /---------------- H007
+ | |
+ | /------16 /-------- H012
+ /-------18 | \------15
+ | +------17 \-------- H011
+ | | |
+ | | \------------------------ H009
+ /------19 |
+ | | \-------------------------------- H006
+ | |
+ /------20 \----------------------------------------- H008
+ | |
+ /------21 \------------------------------------------------- H014
+ | |
+ | \--------------------------------------------------------- H001
+ |
+ +----------------------------------------------------------------- H010
+ |
+-------23----------------------------------------------------------------- H013
+ |
+ | /-------- H003
+ +-------------------------------------------------------22
+ | \-------- H005
+ |
+ \----------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_21 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_21 --> node_20 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_20 --> node_19 10 1 1.000 2 ==> 1
+ node_19 --> node_18 9 1 1.000 2 ==> 1
+ node_17 --> node_16 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 --> 1
+ node_15 --> H012 11 1 0.333 2 ==> 1
+ node_17 --> H009 12 1 0.333 2 --> 1
+ node_18 --> H006 11 1 0.333 2 ==> 1
+ node_19 --> H008 11 1 0.333 2 ==> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+ node_23 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 61:
+
+Branch lengths and linkages for tree #61
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 22 root 0 0 0
+ 20 22 2 2 2
+ 19 20 3 3 3
+ 18 19 2 2 2
+H002 (1) 18 0 0 0
+ 17 18 1 1 1
+ 16 17 2 2 2
+ 15 16 1 1 1
+H007 (3) 15 1 1 1
+H011 (14) 15 0 0 0
+H012 (11) 16 0 0 0
+H008 (4) 17 1 1 1
+H006 (13) 17 0 0 0
+H009 (12) 18 1 1 1
+H014 (5) 19 0 0 0
+H001 (7) 20 0 0 0
+H010 (2) 22 1 1 1
+H013 (6) 22 2 2 2
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (10) 21 1 1 1
+H000 (9)* 22 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /------------------------------------- H002
+ |
+ | /--------- H007
+ | /-------15
+ | | \--------- H011
+ | /-------16
+ /-------18 | \------------------ H012
+ | | |
+ | +--------17--------------------------- H008
+ | | |
+ /-------19 | \--------------------------- H006
+ | | |
+ | | \------------------------------------- H009
+ /-------20 |
+ | | \---------------------------------------------- H014
+ | |
+ | \------------------------------------------------------- H001
+ |
+ +---------------------------------------------------------------- H010
+ |
+--------22---------------------------------------------------------------- H013
+ |
+ | /--------- H003
+ +-----------------------------------------------------21
+ | \--------- H005
+ |
+ \---------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_20 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_20 --> node_19 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_19 --> node_18 9 1 0.500 2 ==> 1
+ 10 1 1.000 2 ==> 1
+ node_18 --> node_17 11 1 0.500 2 ==> 1
+ node_17 --> node_16 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_16 --> node_15 11 1 0.500 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ node_17 --> H008 9 1 0.500 1 ==> 2
+ node_18 --> H009 12 1 0.333 2 ==> 1
+ node_22 --> H010 5 1 1.000 2 ==> 1
+ node_22 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 62:
+
+Branch lengths and linkages for tree #62
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 21 23 0 0 2
+ 20 21 2 2 2
+ 19 20 3 1 3
+ 18 19 2 2 2
+H002 (1) 18 0 0 0
+ 17 18 1 1 1
+ 16 17 2 2 2
+ 15 16 1 1 1
+H007 (3) 15 1 1 1
+H011 (14) 15 0 0 0
+H012 (11) 16 0 0 0
+H008 (4) 17 1 1 1
+H006 (13) 17 0 0 0
+H009 (12) 18 1 1 1
+H014 (5) 19 0 0 0
+H001 (7) 20 0 0 2
+H013 (6) 21 2 0 2
+H010 (2) 23 1 1 1
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (10) 22 1 1 1
+H000 (9)* 23 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /-------------------------------- H002
+ |
+ | /-------- H007
+ | /------15
+ | | \-------- H011
+ | /------16
+ /-------18 | \---------------- H012
+ | | |
+ | +------17------------------------ H008
+ | | |
+ /------19 | \------------------------ H006
+ | | |
+ | | \-------------------------------- H009
+ /------20 |
+ | | \----------------------------------------- H014
+ | |
+ /------21 \------------------------------------------------- H001
+ | |
+ | \--------------------------------------------------------- H013
+ |
+ +----------------------------------------------------------------- H010
+-------23
+ | /-------- H003
+ +-------------------------------------------------------22
+ | \-------- H005
+ |
+ \----------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_20 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_20 --> node_19 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_19 --> node_18 9 1 0.500 2 ==> 1
+ 10 1 1.000 2 ==> 1
+ node_18 --> node_17 11 1 0.500 2 ==> 1
+ node_17 --> node_16 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_16 --> node_15 11 1 0.500 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ node_17 --> H008 9 1 0.500 1 ==> 2
+ node_18 --> H009 12 1 0.333 2 ==> 1
+ node_21 --> H013 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 63:
+
+Branch lengths and linkages for tree #63
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 21 23 0 0 2
+ 20 21 2 2 2
+ 19 20 3 1 3
+ 18 19 1 1 2
+ 16 18 1 0 1
+H002 (1) 16 0 0 0
+ 15 16 2 2 2
+H007 (3) 15 1 1 1
+H012 (11) 15 1 1 1
+H011 (14) 15 0 0 0
+H009 (12) 16 1 1 1
+ 17 18 1 1 1
+H008 (4) 17 0 0 1
+H006 (13) 17 1 0 1
+H014 (5) 19 0 0 0
+H001 (7) 20 0 0 2
+H013 (6) 21 2 0 2
+H010 (2) 23 1 1 1
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (10) 22 1 1 1
+H000 (9)* 23 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /------------------ H002
+ |
+ | /--------- H007
+ | |
+ /-------16-------15--------- H012
+ | | |
+ | | \--------- H011
+ | |
+ /--------18 \------------------ H009
+ | |
+ | | /--------- H008
+ /-------19 \----------------17
+ | | \--------- H006
+ | |
+ /-------20 \------------------------------------- H014
+ | |
+ /-------21 \---------------------------------------------- H001
+ | |
+ | \------------------------------------------------------- H013
+ |
+ +---------------------------------------------------------------- H010
+--------23
+ | /--------- H003
+ +-----------------------------------------------------22
+ | \--------- H005
+ |
+ \---------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_20 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_20 --> node_19 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_19 --> node_18 10 1 1.000 2 ==> 1
+ node_18 --> node_16 9 1 0.500 2 --> 1
+ node_16 --> node_15 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ node_15 --> H012 11 1 0.500 2 ==> 1
+ node_16 --> H009 12 1 0.333 2 ==> 1
+ node_18 --> node_17 11 1 0.500 2 ==> 1
+ node_17 --> H006 9 1 0.500 2 --> 1
+ node_21 --> H013 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 64:
+
+Branch lengths and linkages for tree #64
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 22 root 0 0 0
+ 20 22 0 0 2
+ 19 20 2 2 2
+ 18 19 3 1 3
+ 17 18 1 1 1
+ 16 17 1 1 1
+H002 (1) 16 0 0 0
+ 15 16 2 2 2
+H007 (3) 15 1 1 1
+H012 (11) 15 1 1 1
+H011 (14) 15 0 0 0
+H009 (12) 16 1 1 1
+H006 (13) 16 1 1 1
+H008 (4) 17 1 1 1
+H014 (5) 18 0 0 0
+H001 (7) 19 0 0 2
+H013 (6) 20 2 0 2
+H010 (2) 22 1 1 1
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (10) 21 1 1 1
+H000 (9)* 22 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /------------------ H002
+ |
+ | /--------- H007
+ | |
+ +-------15--------- H012
+ /-------16 |
+ | | \--------- H011
+ | |
+ | +------------------ H009
+ /--------17 |
+ | | \------------------ H006
+ | |
+ /-------18 \--------------------------- H008
+ | |
+ /-------19 \------------------------------------- H014
+ | |
+ /-------20 \---------------------------------------------- H001
+ | |
+ | \------------------------------------------------------- H013
+ |
+ +---------------------------------------------------------------- H010
+--------22
+ | /--------- H003
+ +-----------------------------------------------------21
+ | \--------- H005
+ |
+ \---------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_20 --> node_19 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_19 --> node_18 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_18 --> node_17 10 1 1.000 2 ==> 1
+ node_17 --> node_16 9 1 1.000 2 ==> 1
+ node_16 --> node_15 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ node_15 --> H012 11 1 0.333 2 ==> 1
+ node_16 --> H009 12 1 0.333 2 ==> 1
+ node_16 --> H006 11 1 0.333 2 ==> 1
+ node_17 --> H008 11 1 0.333 2 ==> 1
+ node_20 --> H013 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ node_22 --> H010 5 1 1.000 2 ==> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 65:
+
+Branch lengths and linkages for tree #65
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 21 root 0 0 0
+ 19 21 2 2 2
+ 18 19 3 3 3
+ 17 18 1 1 1
+ 16 17 1 1 1
+H002 (1) 16 0 0 0
+ 15 16 2 2 2
+H007 (3) 15 1 1 1
+H012 (11) 15 1 1 1
+H011 (14) 15 0 0 0
+H009 (12) 16 1 1 1
+H006 (13) 16 1 1 1
+H008 (4) 17 1 1 1
+H014 (5) 18 0 0 0
+H001 (7) 19 0 0 0
+H010 (2) 21 1 1 1
+H013 (6) 21 2 2 2
+ 20 21 1 1 1
+H003 (8) 20 1 1 1
+H005 (10) 20 1 1 1
+H000 (9)* 21 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /--------------------- H002
+ |
+ | /---------- H007
+ | |
+ +---------15---------- H012
+ /--------16 |
+ | | \---------- H011
+ | |
+ | +--------------------- H009
+ /---------17 |
+ | | \--------------------- H006
+ | |
+ /--------18 \------------------------------- H008
+ | |
+ /---------19 \------------------------------------------ H014
+ | |
+ | \---------------------------------------------------- H001
+ |
+ +--------------------------------------------------------------- H010
+ |
+---------21--------------------------------------------------------------- H013
+ |
+ | /---------- H003
+ +---------------------------------------------------20
+ | \---------- H005
+ |
+ \--------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_19 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_19 --> node_18 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_18 --> node_17 10 1 1.000 2 ==> 1
+ node_17 --> node_16 9 1 1.000 2 ==> 1
+ node_16 --> node_15 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ node_15 --> H012 11 1 0.333 2 ==> 1
+ node_16 --> H009 12 1 0.333 2 ==> 1
+ node_16 --> H006 11 1 0.333 2 ==> 1
+ node_17 --> H008 11 1 0.333 2 ==> 1
+ node_21 --> H010 5 1 1.000 2 ==> 1
+ node_21 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ node_21 --> node_20 3 1 1.000 2 ==> 1
+ node_20 --> H003 4 1 1.000 2 ==> 1
+ node_20 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 66:
+
+Branch lengths and linkages for tree #66
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 21 23 2 2 2
+ 20 21 3 3 3
+ 19 20 1 1 1
+ 18 19 1 1 1
+H002 (1) 18 0 0 0
+ 17 18 0 0 1
+ 16 17 2 2 2
+ 15 16 0 0 1
+H007 (3) 15 1 1 1
+H011 (14) 15 0 0 0
+H012 (11) 16 1 0 1
+H006 (13) 17 1 0 1
+H009 (12) 18 1 1 1
+H008 (4) 19 1 1 1
+H014 (5) 20 0 0 0
+H013 (6) 21 0 0 0
+H010 (2) 23 1 1 1
+H001 (7) 23 2 2 2
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (10) 22 1 1 1
+H000 (9)* 23 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /-------------------------------- H002
+ |
+ | /-------- H007
+ | /------15
+ | | \-------- H011
+ /-------18 /------16
+ | | | \---------------- H012
+ | +------17
+ | | \------------------------ H006
+ /------19 |
+ | | \-------------------------------- H009
+ | |
+ /------20 \----------------------------------------- H008
+ | |
+ /------21 \------------------------------------------------- H014
+ | |
+ | \--------------------------------------------------------- H013
+ |
+ +----------------------------------------------------------------- H010
+ |
+-------23----------------------------------------------------------------- H001
+ |
+ | /-------- H003
+ +-------------------------------------------------------22
+ | \-------- H005
+ |
+ \----------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_21 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_21 --> node_20 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_20 --> node_19 10 1 1.000 2 ==> 1
+ node_19 --> node_18 9 1 1.000 2 ==> 1
+ node_17 --> node_16 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ node_16 --> H012 11 1 0.333 2 --> 1
+ node_17 --> H006 11 1 0.333 2 --> 1
+ node_18 --> H009 12 1 0.333 2 ==> 1
+ node_19 --> H008 11 1 0.333 2 ==> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+ node_23 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 67:
+
+Branch lengths and linkages for tree #67
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 25 root 0 0 0
+ 23 25 0 0 2
+ 22 23 2 2 2
+ 21 22 3 1 3
+ 20 21 1 1 2
+ 19 20 1 1 1
+ 18 19 0 0 1
+ 15 18 0 0 1
+H002 (1) 15 0 0 0
+H009 (12) 15 1 1 1
+ 17 18 2 2 2
+ 16 17 0 0 1
+H007 (3) 16 1 1 1
+H011 (14) 16 0 0 0
+H012 (11) 17 1 0 1
+H006 (13) 19 1 0 1
+H008 (4) 20 1 0 1
+H014 (5) 21 0 0 0
+H013 (6) 22 0 0 2
+H001 (7) 23 2 0 2
+H010 (2) 25 1 1 1
+ 24 25 1 1 1
+H003 (8) 24 1 1 1
+H005 (10) 24 1 1 1
+H000 (9)* 25 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /------- H002
+ /-------------15
+ | \------- H009
+ |
+ /-----18 /------- H007
+ | | /------16
+ | | | \------- H011
+ /-----19 \-----17
+ | | \--------------- H012
+ | |
+ /------20 \----------------------------- H006
+ | |
+ /-----21 \------------------------------------ H008
+ | |
+ /-----22 \-------------------------------------------- H014
+ | |
+ /------23 \--------------------------------------------------- H013
+ | |
+ | \---------------------------------------------------------- H001
+ |
+ +------------------------------------------------------------------ H010
+------25
+ | /------- H003
+ +---------------------------------------------------------24
+ | \------- H005
+ |
+ \------------------------------------------------------------------ H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_22 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_22 --> node_21 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_21 --> node_20 10 1 1.000 2 ==> 1
+ node_20 --> node_19 9 1 1.000 2 ==> 1
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_18 --> node_17 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 ==> 1
+ node_17 --> H012 11 1 0.333 2 --> 1
+ node_19 --> H006 11 1 0.333 2 --> 1
+ node_20 --> H008 11 1 0.333 2 --> 1
+ node_23 --> H001 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ node_25 --> H010 5 1 1.000 2 ==> 1
+ node_25 --> node_24 3 1 1.000 2 ==> 1
+ node_24 --> H003 4 1 1.000 2 ==> 1
+ node_24 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 68:
+
+Branch lengths and linkages for tree #68
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 24 root 0 0 0
+ 22 24 0 0 2
+ 21 22 2 2 2
+ 20 21 3 1 3
+ 19 20 1 1 1
+ 18 19 1 1 1
+H002 (1) 18 0 0 0
+ 17 18 0 0 1
+ 16 17 2 2 2
+ 15 16 0 0 1
+H007 (3) 15 1 1 1
+H011 (14) 15 0 0 0
+H012 (11) 16 1 0 1
+H006 (13) 17 1 0 1
+H009 (12) 18 1 1 1
+H008 (4) 19 1 1 1
+H014 (5) 20 0 0 0
+H013 (6) 21 0 0 2
+H001 (7) 22 2 0 2
+H010 (2) 24 1 1 1
+ 23 24 1 1 1
+H003 (8) 23 1 1 1
+H005 (10) 23 1 1 1
+H000 (9)* 24 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /----------------------------- H002
+ |
+ | /------- H007
+ | /------15
+ | | \------- H011
+ /-----18 /-----16
+ | | | \--------------- H012
+ | +-----17
+ | | \---------------------- H006
+ /------19 |
+ | | \----------------------------- H009
+ | |
+ /-----20 \------------------------------------ H008
+ | |
+ /-----21 \-------------------------------------------- H014
+ | |
+ /------22 \--------------------------------------------------- H013
+ | |
+ | \---------------------------------------------------------- H001
+ |
+ +------------------------------------------------------------------ H010
+------24
+ | /------- H003
+ +---------------------------------------------------------23
+ | \------- H005
+ |
+ \------------------------------------------------------------------ H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_21 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_21 --> node_20 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_20 --> node_19 10 1 1.000 2 ==> 1
+ node_19 --> node_18 9 1 1.000 2 ==> 1
+ node_17 --> node_16 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ node_16 --> H012 11 1 0.333 2 --> 1
+ node_17 --> H006 11 1 0.333 2 --> 1
+ node_18 --> H009 12 1 0.333 2 ==> 1
+ node_19 --> H008 11 1 0.333 2 ==> 1
+ node_22 --> H001 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ node_24 --> H010 5 1 1.000 2 ==> 1
+ node_24 --> node_23 3 1 1.000 2 ==> 1
+ node_23 --> H003 4 1 1.000 2 ==> 1
+ node_23 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 69:
+
+Branch lengths and linkages for tree #69
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 22 root 0 0 0
+ 20 22 2 2 2
+ 19 20 3 3 3
+ 18 19 1 1 2
+ 17 18 1 1 1
+ 16 17 0 0 1
+H002 (1) 16 0 0 0
+ 15 16 2 2 2
+H007 (3) 15 1 1 1
+H012 (11) 15 1 1 1
+H011 (14) 15 0 0 0
+H009 (12) 16 1 1 1
+H006 (13) 17 1 0 1
+H008 (4) 18 1 0 1
+H014 (5) 19 0 0 0
+H001 (7) 20 0 0 0
+H010 (2) 22 1 1 1
+H013 (6) 22 2 2 2
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (10) 21 1 1 1
+H000 (9)* 22 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /------------------ H002
+ |
+ | /--------- H007
+ | |
+ /-------16-------15--------- H012
+ | | |
+ | | \--------- H011
+ /--------17 |
+ | | \------------------ H009
+ | |
+ /-------18 \--------------------------- H006
+ | |
+ /-------19 \------------------------------------- H008
+ | |
+ /-------20 \---------------------------------------------- H014
+ | |
+ | \------------------------------------------------------- H001
+ |
+ +---------------------------------------------------------------- H010
+ |
+--------22---------------------------------------------------------------- H013
+ |
+ | /--------- H003
+ +-----------------------------------------------------21
+ | \--------- H005
+ |
+ \---------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_20 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_20 --> node_19 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_19 --> node_18 10 1 1.000 2 ==> 1
+ node_18 --> node_17 9 1 1.000 2 ==> 1
+ node_16 --> node_15 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ node_15 --> H012 11 1 0.333 2 ==> 1
+ node_16 --> H009 12 1 0.333 2 ==> 1
+ node_17 --> H006 11 1 0.333 2 --> 1
+ node_18 --> H008 11 1 0.333 2 --> 1
+ node_22 --> H010 5 1 1.000 2 ==> 1
+ node_22 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 70:
+
+Branch lengths and linkages for tree #70
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 21 23 0 0 2
+ 20 21 2 2 2
+ 19 20 3 1 3
+ 18 19 1 1 2
+ 17 18 1 1 1
+ 16 17 0 0 1
+H002 (1) 16 0 0 0
+ 15 16 2 2 2
+H007 (3) 15 1 1 1
+H012 (11) 15 1 1 1
+H011 (14) 15 0 0 0
+H009 (12) 16 1 1 1
+H006 (13) 17 1 0 1
+H008 (4) 18 1 0 1
+H014 (5) 19 0 0 0
+H001 (7) 20 0 0 2
+H013 (6) 21 2 0 2
+H010 (2) 23 1 1 1
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (10) 22 1 1 1
+H000 (9)* 23 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /---------------- H002
+ |
+ | /-------- H007
+ | |
+ /------16------15-------- H012
+ | | |
+ | | \-------- H011
+ /------17 |
+ | | \---------------- H009
+ | |
+ /-------18 \------------------------ H006
+ | |
+ /------19 \-------------------------------- H008
+ | |
+ /------20 \----------------------------------------- H014
+ | |
+ /------21 \------------------------------------------------- H001
+ | |
+ | \--------------------------------------------------------- H013
+ |
+ +----------------------------------------------------------------- H010
+-------23
+ | /-------- H003
+ +-------------------------------------------------------22
+ | \-------- H005
+ |
+ \----------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_20 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_20 --> node_19 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_19 --> node_18 10 1 1.000 2 ==> 1
+ node_18 --> node_17 9 1 1.000 2 ==> 1
+ node_16 --> node_15 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ node_15 --> H012 11 1 0.333 2 ==> 1
+ node_16 --> H009 12 1 0.333 2 ==> 1
+ node_17 --> H006 11 1 0.333 2 --> 1
+ node_18 --> H008 11 1 0.333 2 --> 1
+ node_21 --> H013 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 71:
+
+Branch lengths and linkages for tree #71
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 25 root 0 0 0
+ 23 25 0 0 2
+ 22 23 2 2 2
+ 21 22 3 1 3
+ 20 21 1 1 2
+ 19 20 1 1 1
+ 15 19 0 0 1
+H002 (1) 15 0 0 0
+H009 (12) 15 1 1 1
+ 18 19 0 0 1
+ 17 18 2 2 2
+ 16 17 0 0 1
+H007 (3) 16 1 1 1
+H011 (14) 16 0 0 0
+H012 (11) 17 1 0 1
+H006 (13) 18 1 0 1
+H008 (4) 20 1 0 1
+H014 (5) 21 0 0 0
+H013 (6) 22 0 0 2
+H001 (7) 23 2 0 2
+H010 (2) 25 1 1 1
+ 24 25 1 1 1
+H003 (8) 24 1 1 1
+H005 (10) 24 1 1 1
+H000 (9)* 25 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /------- H002
+ /--------------------15
+ | \------- H009
+ |
+ | /------- H007
+ /-----19 /------16
+ | | | \------- H011
+ | | /-----17
+ | | | \--------------- H012
+ /------20 \-----18
+ | | \---------------------- H006
+ | |
+ /-----21 \------------------------------------ H008
+ | |
+ /-----22 \-------------------------------------------- H014
+ | |
+ /------23 \--------------------------------------------------- H013
+ | |
+ | \---------------------------------------------------------- H001
+ |
+ +------------------------------------------------------------------ H010
+------25
+ | /------- H003
+ +---------------------------------------------------------24
+ | \------- H005
+ |
+ \------------------------------------------------------------------ H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_22 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_22 --> node_21 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_21 --> node_20 10 1 1.000 2 ==> 1
+ node_20 --> node_19 9 1 1.000 2 ==> 1
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_18 --> node_17 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 ==> 1
+ node_17 --> H012 11 1 0.333 2 --> 1
+ node_18 --> H006 11 1 0.333 2 --> 1
+ node_20 --> H008 11 1 0.333 2 --> 1
+ node_23 --> H001 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ node_25 --> H010 5 1 1.000 2 ==> 1
+ node_25 --> node_24 3 1 1.000 2 ==> 1
+ node_24 --> H003 4 1 1.000 2 ==> 1
+ node_24 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 72:
+
+Branch lengths and linkages for tree #72
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 24 root 0 0 0
+ 22 24 0 0 2
+ 21 22 2 2 2
+ 20 21 3 1 3
+ 19 20 1 1 2
+ 18 19 1 1 1
+ 15 18 0 0 1
+H002 (1) 15 0 0 0
+H009 (12) 15 1 1 1
+ 17 18 2 2 2
+ 16 17 0 0 1
+H007 (3) 16 1 1 1
+H011 (14) 16 0 0 0
+H012 (11) 17 1 0 1
+H006 (13) 18 1 0 1
+H008 (4) 19 1 0 1
+H014 (5) 20 0 0 0
+H013 (6) 21 0 0 2
+H001 (7) 22 2 0 2
+H010 (2) 24 1 1 1
+ 23 24 1 1 1
+H003 (8) 23 1 1 1
+H005 (10) 23 1 1 1
+H000 (9)* 24 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /-------- H002
+ /--------------15
+ | \-------- H009
+ |
+ | /-------- H007
+ | /------16
+ /------18 | \-------- H011
+ | +------17
+ | | \---------------- H012
+ /-------19 |
+ | | \------------------------ H006
+ | |
+ /------20 \-------------------------------- H008
+ | |
+ /------21 \----------------------------------------- H014
+ | |
+ /------22 \------------------------------------------------- H013
+ | |
+ | \--------------------------------------------------------- H001
+ |
+ +----------------------------------------------------------------- H010
+-------24
+ | /-------- H003
+ +-------------------------------------------------------23
+ | \-------- H005
+ |
+ \----------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_21 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_21 --> node_20 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_20 --> node_19 10 1 1.000 2 ==> 1
+ node_19 --> node_18 9 1 1.000 2 ==> 1
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_18 --> node_17 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 ==> 1
+ node_17 --> H012 11 1 0.333 2 --> 1
+ node_18 --> H006 11 1 0.333 2 --> 1
+ node_19 --> H008 11 1 0.333 2 --> 1
+ node_22 --> H001 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ node_24 --> H010 5 1 1.000 2 ==> 1
+ node_24 --> node_23 3 1 1.000 2 ==> 1
+ node_23 --> H003 4 1 1.000 2 ==> 1
+ node_23 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 73:
+
+Branch lengths and linkages for tree #73
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 24 root 0 0 0
+ 22 24 0 0 2
+ 21 22 2 2 2
+ 20 21 3 1 3
+ 19 20 1 1 1
+ 18 19 1 1 1
+H002 (1) 18 0 0 0
+ 17 18 0 0 1
+ 16 17 2 2 2
+H007 (3) 16 1 0 1
+ 15 16 0 0 1
+H012 (11) 15 1 1 1
+H011 (14) 15 0 0 0
+H009 (12) 17 1 0 1
+H006 (13) 18 1 1 1
+H008 (4) 19 1 1 1
+H014 (5) 20 0 0 0
+H013 (6) 21 0 0 2
+H001 (7) 22 2 0 2
+H010 (2) 24 1 1 1
+ 23 24 1 1 1
+H003 (8) 23 1 1 1
+H005 (10) 23 1 1 1
+H000 (9)* 24 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /----------------------------- H002
+ |
+ | /--------------- H007
+ | |
+ | /-----16 /------- H012
+ /-----18 | \------15
+ | +-----17 \------- H011
+ | | |
+ | | \---------------------- H009
+ /------19 |
+ | | \----------------------------- H006
+ | |
+ /-----20 \------------------------------------ H008
+ | |
+ /-----21 \-------------------------------------------- H014
+ | |
+ /------22 \--------------------------------------------------- H013
+ | |
+ | \---------------------------------------------------------- H001
+ |
+ +------------------------------------------------------------------ H010
+------24
+ | /------- H003
+ +---------------------------------------------------------23
+ | \------- H005
+ |
+ \------------------------------------------------------------------ H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_21 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_21 --> node_20 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_20 --> node_19 10 1 1.000 2 ==> 1
+ node_19 --> node_18 9 1 1.000 2 ==> 1
+ node_17 --> node_16 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 --> 1
+ node_15 --> H012 11 1 0.333 2 ==> 1
+ node_17 --> H009 12 1 0.333 2 --> 1
+ node_18 --> H006 11 1 0.333 2 ==> 1
+ node_19 --> H008 11 1 0.333 2 ==> 1
+ node_22 --> H001 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ node_24 --> H010 5 1 1.000 2 ==> 1
+ node_24 --> node_23 3 1 1.000 2 ==> 1
+ node_23 --> H003 4 1 1.000 2 ==> 1
+ node_23 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 74:
+
+Branch lengths and linkages for tree #74
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 21 23 2 2 2
+ 20 21 3 3 3
+ 19 20 0 0 1
+ 18 19 2 2 2
+ 15 18 0 0 1
+H002 (1) 15 0 0 0
+H009 (12) 15 1 1 1
+ 17 18 0 0 1
+ 16 17 1 1 1
+H008 (4) 16 1 0 1
+H014 (5) 16 1 1 2
+H006 (13) 17 1 0 1
+H012 (11) 19 1 0 1
+H007 (3) 20 1 1 1
+H011 (14) 20 0 0 0
+H013 (6) 21 0 0 0
+H010 (2) 23 1 1 1
+H001 (7) 23 2 2 2
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (10) 22 1 1 1
+H000 (9)* 23 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /--------- H002
+ /----------------15
+ | \--------- H009
+ |
+ /--------18 /--------- H008
+ | | /-------16
+ | | | \--------- H014
+ /-------19 \-------17
+ | | \------------------ H006
+ | |
+ | \------------------------------------- H012
+ /-------20
+ | +---------------------------------------------- H007
+ | |
+ /-------21 \---------------------------------------------- H011
+ | |
+ | \------------------------------------------------------- H013
+ |
+ +---------------------------------------------------------------- H010
+ |
+--------23---------------------------------------------------------------- H001
+ |
+ | /--------- H003
+ +-----------------------------------------------------22
+ | \--------- H005
+ |
+ \---------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_21 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_21 --> node_20 8 1 1.000 2 ==> 1
+ 9 1 0.500 2 ==> 1
+ 10 1 0.500 2 ==> 1
+ node_19 --> node_18 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_17 --> node_16 9 1 0.500 1 ==> 2
+ node_16 --> H008 11 1 0.333 2 --> 1
+ node_16 --> H014 10 1 0.500 1 ==> 2
+ node_17 --> H006 11 1 0.333 2 --> 1
+ node_19 --> H012 11 1 0.333 2 --> 1
+ node_20 --> H007 12 1 0.333 2 ==> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+ node_23 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 75:
+
+Branch lengths and linkages for tree #75
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 21 23 2 2 2
+ 20 21 3 3 3
+ 19 20 0 0 1
+ 18 19 2 2 2
+ 17 18 0 0 1
+ 15 17 0 0 1
+H002 (1) 15 0 0 0
+H009 (12) 15 1 1 1
+ 16 17 1 1 1
+H008 (4) 16 1 0 1
+H014 (5) 16 1 1 2
+H006 (13) 18 1 0 1
+H012 (11) 19 1 0 1
+H007 (3) 20 1 1 1
+H011 (14) 20 0 0 0
+H013 (6) 21 0 0 0
+H010 (2) 23 1 1 1
+H001 (7) 23 2 2 2
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (10) 22 1 1 1
+H000 (9)* 23 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /--------- H002
+ /-------15
+ | \--------- H009
+ /-------17
+ | | /--------- H008
+ | \-------16
+ /--------18 \--------- H014
+ | |
+ /-------19 \--------------------------- H006
+ | |
+ | \------------------------------------- H012
+ /-------20
+ | +---------------------------------------------- H007
+ | |
+ /-------21 \---------------------------------------------- H011
+ | |
+ | \------------------------------------------------------- H013
+ |
+ +---------------------------------------------------------------- H010
+ |
+--------23---------------------------------------------------------------- H001
+ |
+ | /--------- H003
+ +-----------------------------------------------------22
+ | \--------- H005
+ |
+ \---------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_21 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_21 --> node_20 8 1 1.000 2 ==> 1
+ 9 1 0.500 2 ==> 1
+ 10 1 0.500 2 ==> 1
+ node_19 --> node_18 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_17 --> node_16 9 1 0.500 1 ==> 2
+ node_16 --> H008 11 1 0.333 2 --> 1
+ node_16 --> H014 10 1 0.500 1 ==> 2
+ node_18 --> H006 11 1 0.333 2 --> 1
+ node_19 --> H012 11 1 0.333 2 --> 1
+ node_20 --> H007 12 1 0.333 2 ==> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+ node_23 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 76:
+
+Branch lengths and linkages for tree #76
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 22 root 0 0 0
+ 20 22 2 2 2
+ 19 20 3 3 3
+ 18 19 0 0 1
+ 17 18 2 2 2
+ 15 17 0 0 1
+H002 (1) 15 0 0 0
+H009 (12) 15 1 1 1
+ 16 17 1 1 1
+H008 (4) 16 1 0 1
+H014 (5) 16 1 1 2
+H006 (13) 17 1 0 1
+H012 (11) 18 1 0 1
+H007 (3) 19 1 1 1
+H011 (14) 19 0 0 0
+H013 (6) 20 0 0 0
+H010 (2) 22 1 1 1
+H001 (7) 22 2 2 2
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (10) 21 1 1 1
+H000 (9)* 22 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /---------- H002
+ /---------15
+ | \---------- H009
+ |
+ | /---------- H008
+ /--------17---------16
+ | | \---------- H014
+ | |
+ /---------18 \--------------------- H006
+ | |
+ | \------------------------------- H012
+ /--------19
+ | +------------------------------------------ H007
+ | |
+ /---------20 \------------------------------------------ H011
+ | |
+ | \---------------------------------------------------- H013
+ |
+ +--------------------------------------------------------------- H010
+ |
+---------22--------------------------------------------------------------- H001
+ |
+ | /---------- H003
+ +---------------------------------------------------21
+ | \---------- H005
+ |
+ \--------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_20 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_20 --> node_19 8 1 1.000 2 ==> 1
+ 9 1 0.500 2 ==> 1
+ 10 1 0.500 2 ==> 1
+ node_18 --> node_17 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_17 --> node_16 9 1 0.500 1 ==> 2
+ node_16 --> H008 11 1 0.333 2 --> 1
+ node_16 --> H014 10 1 0.500 1 ==> 2
+ node_17 --> H006 11 1 0.333 2 --> 1
+ node_18 --> H012 11 1 0.333 2 --> 1
+ node_19 --> H007 12 1 0.333 2 ==> 1
+ node_22 --> H010 5 1 1.000 2 ==> 1
+ node_22 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 77:
+
+Branch lengths and linkages for tree #77
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 24 root 0 0 0
+ 22 24 2 2 2
+ 21 22 3 3 3
+ 20 21 1 1 2
+ 15 20 1 0 1
+H002 (1) 15 0 0 0
+H009 (12) 15 1 1 1
+ 19 20 1 1 1
+ 18 19 1 0 1
+ 17 18 2 2 2
+ 16 17 1 1 1
+H007 (3) 16 1 1 1
+H011 (14) 16 0 0 0
+H012 (11) 17 0 0 0
+H006 (13) 18 0 0 0
+H008 (4) 19 0 0 1
+H014 (5) 21 0 0 0
+H001 (7) 22 0 0 0
+H010 (2) 24 1 1 1
+H013 (6) 24 2 2 2
+ 23 24 1 1 1
+H003 (8) 23 1 1 1
+H005 (10) 23 1 1 1
+H000 (9)* 24 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /-------- H002
+ /-------------------------------15
+ | \-------- H009
+ |
+ | /-------- H007
+ | /------16
+ /------20 | \-------- H011
+ | | /------17
+ | | | \---------------- H012
+ | | /------18
+ /------21 | | \------------------------ H006
+ | | \-------19
+ | | \-------------------------------- H008
+ /------22 |
+ | | \------------------------------------------------- H014
+ | |
+ | \--------------------------------------------------------- H001
+ |
+ +----------------------------------------------------------------- H010
+ |
+-------24----------------------------------------------------------------- H013
+ |
+ | /-------- H003
+ +-------------------------------------------------------23
+ | \-------- H005
+ |
+ \----------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_24 --> node_22 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_22 --> node_21 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_21 --> node_20 10 1 1.000 2 ==> 1
+ node_20 --> node_15 9 1 0.500 2 --> 1
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_20 --> node_19 11 1 0.500 2 ==> 1
+ node_19 --> node_18 9 1 0.500 2 --> 1
+ node_18 --> node_17 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_17 --> node_16 11 1 0.500 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 ==> 1
+ node_24 --> H010 5 1 1.000 2 ==> 1
+ node_24 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ node_24 --> node_23 3 1 1.000 2 ==> 1
+ node_23 --> H003 4 1 1.000 2 ==> 1
+ node_23 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 78:
+
+Branch lengths and linkages for tree #78
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 25 root 0 0 0
+ 23 25 0 0 2
+ 22 23 2 2 2
+ 21 22 3 1 3
+ 20 21 1 1 2
+ 15 20 1 0 1
+H002 (1) 15 0 0 0
+H009 (12) 15 1 1 1
+ 19 20 1 1 1
+ 18 19 1 0 1
+ 17 18 2 2 2
+ 16 17 1 1 1
+H007 (3) 16 1 1 1
+H011 (14) 16 0 0 0
+H012 (11) 17 0 0 0
+H006 (13) 18 0 0 0
+H008 (4) 19 0 0 1
+H014 (5) 21 0 0 0
+H001 (7) 22 0 0 2
+H013 (6) 23 2 0 2
+H010 (2) 25 1 1 1
+ 24 25 1 1 1
+H003 (8) 24 1 1 1
+H005 (10) 24 1 1 1
+H000 (9)* 25 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /------- H002
+ /---------------------------15
+ | \------- H009
+ |
+ | /------- H007
+ | /------16
+ /------20 | \------- H011
+ | | /-----17
+ | | | \--------------- H012
+ | | /-----18
+ /-----21 | | \---------------------- H006
+ | | \-----19
+ | | \----------------------------- H008
+ /-----22 |
+ | | \-------------------------------------------- H014
+ | |
+ /------23 \--------------------------------------------------- H001
+ | |
+ | \---------------------------------------------------------- H013
+ |
+ +------------------------------------------------------------------ H010
+------25
+ | /------- H003
+ +---------------------------------------------------------24
+ | \------- H005
+ |
+ \------------------------------------------------------------------ H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_22 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_22 --> node_21 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_21 --> node_20 10 1 1.000 2 ==> 1
+ node_20 --> node_15 9 1 0.500 2 --> 1
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_20 --> node_19 11 1 0.500 2 ==> 1
+ node_19 --> node_18 9 1 0.500 2 --> 1
+ node_18 --> node_17 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_17 --> node_16 11 1 0.500 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 ==> 1
+ node_23 --> H013 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ node_25 --> H010 5 1 1.000 2 ==> 1
+ node_25 --> node_24 3 1 1.000 2 ==> 1
+ node_24 --> H003 4 1 1.000 2 ==> 1
+ node_24 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 79:
+
+Branch lengths and linkages for tree #79
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 24 root 0 0 0
+ 22 24 0 0 2
+ 21 22 2 2 2
+ 20 21 3 1 3
+ 19 20 1 1 1
+ 18 19 1 1 1
+H002 (1) 18 0 0 0
+ 17 18 0 0 1
+ 16 17 2 2 2
+H007 (3) 16 1 0 1
+ 15 16 0 0 1
+H012 (11) 15 1 1 1
+H011 (14) 15 0 0 0
+H009 (12) 17 1 0 1
+H006 (13) 18 1 1 1
+H008 (4) 19 1 1 1
+H014 (5) 20 0 0 0
+H001 (7) 21 0 0 2
+H013 (6) 22 2 0 2
+H010 (2) 24 1 1 1
+ 23 24 1 1 1
+H003 (8) 23 1 1 1
+H005 (10) 23 1 1 1
+H000 (9)* 24 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /----------------------------- H002
+ |
+ | /--------------- H007
+ | |
+ | /-----16 /------- H012
+ /-----18 | \------15
+ | +-----17 \------- H011
+ | | |
+ | | \---------------------- H009
+ /------19 |
+ | | \----------------------------- H006
+ | |
+ /-----20 \------------------------------------ H008
+ | |
+ /-----21 \-------------------------------------------- H014
+ | |
+ /------22 \--------------------------------------------------- H001
+ | |
+ | \---------------------------------------------------------- H013
+ |
+ +------------------------------------------------------------------ H010
+------24
+ | /------- H003
+ +---------------------------------------------------------23
+ | \------- H005
+ |
+ \------------------------------------------------------------------ H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_21 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_21 --> node_20 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_20 --> node_19 10 1 1.000 2 ==> 1
+ node_19 --> node_18 9 1 1.000 2 ==> 1
+ node_17 --> node_16 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 --> 1
+ node_15 --> H012 11 1 0.333 2 ==> 1
+ node_17 --> H009 12 1 0.333 2 --> 1
+ node_18 --> H006 11 1 0.333 2 ==> 1
+ node_19 --> H008 11 1 0.333 2 ==> 1
+ node_22 --> H013 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ node_24 --> H010 5 1 1.000 2 ==> 1
+ node_24 --> node_23 3 1 1.000 2 ==> 1
+ node_23 --> H003 4 1 1.000 2 ==> 1
+ node_23 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 80:
+
+Branch lengths and linkages for tree #80
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 22 root 0 0 0
+ 20 22 2 2 2
+ 19 20 3 3 3
+ 18 19 0 0 1
+ 17 18 2 2 2
+ 16 17 0 0 1
+H002 (1) 16 0 0 0
+ 15 16 1 1 1
+H008 (4) 15 1 1 1
+H014 (5) 15 1 1 1
+H006 (13) 16 1 1 1
+H009 (12) 17 1 0 1
+H007 (3) 18 1 0 1
+H012 (11) 19 1 1 1
+H011 (14) 19 0 0 0
+H013 (6) 20 0 0 0
+H010 (2) 22 1 1 1
+H001 (7) 22 2 2 2
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (10) 21 1 1 1
+H000 (9)* 22 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /------------------ H002
+ |
+ | /--------- H008
+ /-------16-------15
+ | | \--------- H014
+ | |
+ /--------17 \------------------ H006
+ | |
+ /-------18 \--------------------------- H009
+ | |
+ | \------------------------------------- H007
+ /-------19
+ | +---------------------------------------------- H012
+ | |
+ /-------20 \---------------------------------------------- H011
+ | |
+ | \------------------------------------------------------- H013
+ |
+ +---------------------------------------------------------------- H010
+ |
+--------22---------------------------------------------------------------- H001
+ |
+ | /--------- H003
+ +-----------------------------------------------------21
+ | \--------- H005
+ |
+ \---------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_20 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_20 --> node_19 8 1 1.000 2 ==> 1
+ 9 1 0.500 2 ==> 1
+ 10 1 0.500 2 ==> 1
+ node_18 --> node_17 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_16 --> node_15 9 1 0.500 1 ==> 2
+ node_15 --> H008 11 1 0.333 2 ==> 1
+ node_15 --> H014 10 1 0.500 1 ==> 2
+ node_16 --> H006 11 1 0.333 2 ==> 1
+ node_17 --> H009 12 1 0.333 2 --> 1
+ node_18 --> H007 12 1 0.333 2 --> 1
+ node_19 --> H012 11 1 0.333 2 ==> 1
+ node_22 --> H010 5 1 1.000 2 ==> 1
+ node_22 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 81:
+
+Branch lengths and linkages for tree #81
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 22 root 0 0 0
+ 20 22 2 2 2
+ 19 20 3 3 3
+ 18 19 0 0 1
+ 17 18 2 2 2
+ 16 17 0 0 1
+H002 (1) 16 0 0 0
+ 15 16 1 1 1
+H008 (4) 15 1 1 1
+H014 (5) 15 1 1 1
+H009 (12) 16 1 1 1
+H006 (13) 17 1 0 1
+H012 (11) 18 1 0 1
+H007 (3) 19 1 1 1
+H011 (14) 19 0 0 0
+H013 (6) 20 0 0 0
+H010 (2) 22 1 1 1
+H001 (7) 22 2 2 2
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (10) 21 1 1 1
+H000 (9)* 22 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /------------------ H002
+ |
+ | /--------- H008
+ /-------16-------15
+ | | \--------- H014
+ | |
+ /--------17 \------------------ H009
+ | |
+ /-------18 \--------------------------- H006
+ | |
+ | \------------------------------------- H012
+ /-------19
+ | +---------------------------------------------- H007
+ | |
+ /-------20 \---------------------------------------------- H011
+ | |
+ | \------------------------------------------------------- H013
+ |
+ +---------------------------------------------------------------- H010
+ |
+--------22---------------------------------------------------------------- H001
+ |
+ | /--------- H003
+ +-----------------------------------------------------21
+ | \--------- H005
+ |
+ \---------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_20 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_20 --> node_19 8 1 1.000 2 ==> 1
+ 9 1 0.500 2 ==> 1
+ 10 1 0.500 2 ==> 1
+ node_18 --> node_17 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_16 --> node_15 9 1 0.500 1 ==> 2
+ node_15 --> H008 11 1 0.333 2 ==> 1
+ node_15 --> H014 10 1 0.500 1 ==> 2
+ node_16 --> H009 12 1 0.333 2 ==> 1
+ node_17 --> H006 11 1 0.333 2 --> 1
+ node_18 --> H012 11 1 0.333 2 --> 1
+ node_19 --> H007 12 1 0.333 2 ==> 1
+ node_22 --> H010 5 1 1.000 2 ==> 1
+ node_22 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 82:
+
+Branch lengths and linkages for tree #82
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 24 root 0 0 0
+ 22 24 2 2 2
+ 21 22 3 3 3
+ 20 21 1 1 2
+ 19 20 1 1 1
+ 18 19 0 0 1
+ 15 18 0 0 1
+H002 (1) 15 0 0 0
+H009 (12) 15 1 1 1
+ 17 18 2 2 2
+ 16 17 0 0 1
+H007 (3) 16 1 1 1
+H011 (14) 16 0 0 0
+H012 (11) 17 1 0 1
+H006 (13) 19 1 0 1
+H008 (4) 20 1 0 1
+H014 (5) 21 0 0 0
+H001 (7) 22 0 0 0
+H010 (2) 24 1 1 1
+H013 (6) 24 2 2 2
+ 23 24 1 1 1
+H003 (8) 23 1 1 1
+H005 (10) 23 1 1 1
+H000 (9)* 24 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /-------- H002
+ /--------------15
+ | \-------- H009
+ |
+ /------18 /-------- H007
+ | | /------16
+ | | | \-------- H011
+ /-------19 \------17
+ | | \---------------- H012
+ | |
+ /------20 \-------------------------------- H006
+ | |
+ /------21 \----------------------------------------- H008
+ | |
+ /------22 \------------------------------------------------- H014
+ | |
+ | \--------------------------------------------------------- H001
+ |
+ +----------------------------------------------------------------- H010
+ |
+-------24----------------------------------------------------------------- H013
+ |
+ | /-------- H003
+ +-------------------------------------------------------23
+ | \-------- H005
+ |
+ \----------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_24 --> node_22 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_22 --> node_21 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_21 --> node_20 10 1 1.000 2 ==> 1
+ node_20 --> node_19 9 1 1.000 2 ==> 1
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_18 --> node_17 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 ==> 1
+ node_17 --> H012 11 1 0.333 2 --> 1
+ node_19 --> H006 11 1 0.333 2 --> 1
+ node_20 --> H008 11 1 0.333 2 --> 1
+ node_24 --> H010 5 1 1.000 2 ==> 1
+ node_24 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ node_24 --> node_23 3 1 1.000 2 ==> 1
+ node_23 --> H003 4 1 1.000 2 ==> 1
+ node_23 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 83:
+
+Branch lengths and linkages for tree #83
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 25 root 0 0 0
+ 23 25 0 0 2
+ 22 23 2 2 2
+ 21 22 3 1 3
+ 20 21 1 1 2
+ 19 20 1 1 1
+ 18 19 0 0 1
+ 15 18 0 0 1
+H002 (1) 15 0 0 0
+H009 (12) 15 1 1 1
+ 17 18 2 2 2
+ 16 17 0 0 1
+H007 (3) 16 1 1 1
+H011 (14) 16 0 0 0
+H012 (11) 17 1 0 1
+H006 (13) 19 1 0 1
+H008 (4) 20 1 0 1
+H014 (5) 21 0 0 0
+H001 (7) 22 0 0 2
+H013 (6) 23 2 0 2
+H010 (2) 25 1 1 1
+ 24 25 1 1 1
+H003 (8) 24 1 1 1
+H005 (10) 24 1 1 1
+H000 (9)* 25 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /------- H002
+ /-------------15
+ | \------- H009
+ |
+ /-----18 /------- H007
+ | | /------16
+ | | | \------- H011
+ /-----19 \-----17
+ | | \--------------- H012
+ | |
+ /------20 \----------------------------- H006
+ | |
+ /-----21 \------------------------------------ H008
+ | |
+ /-----22 \-------------------------------------------- H014
+ | |
+ /------23 \--------------------------------------------------- H001
+ | |
+ | \---------------------------------------------------------- H013
+ |
+ +------------------------------------------------------------------ H010
+------25
+ | /------- H003
+ +---------------------------------------------------------24
+ | \------- H005
+ |
+ \------------------------------------------------------------------ H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_22 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_22 --> node_21 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_21 --> node_20 10 1 1.000 2 ==> 1
+ node_20 --> node_19 9 1 1.000 2 ==> 1
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_18 --> node_17 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 ==> 1
+ node_17 --> H012 11 1 0.333 2 --> 1
+ node_19 --> H006 11 1 0.333 2 --> 1
+ node_20 --> H008 11 1 0.333 2 --> 1
+ node_23 --> H013 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ node_25 --> H010 5 1 1.000 2 ==> 1
+ node_25 --> node_24 3 1 1.000 2 ==> 1
+ node_24 --> H003 4 1 1.000 2 ==> 1
+ node_24 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 84:
+
+Branch lengths and linkages for tree #84
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 24 root 0 0 0
+ 22 24 2 2 2
+ 21 22 3 3 3
+ 20 21 1 1 2
+ 19 20 1 1 1
+ 15 19 0 0 1
+H002 (1) 15 0 0 0
+H009 (12) 15 1 1 1
+ 18 19 0 0 1
+ 17 18 2 2 2
+ 16 17 0 0 1
+H007 (3) 16 1 1 1
+H011 (14) 16 0 0 0
+H012 (11) 17 1 0 1
+H006 (13) 18 1 0 1
+H008 (4) 20 1 0 1
+H014 (5) 21 0 0 0
+H001 (7) 22 0 0 0
+H010 (2) 24 1 1 1
+H013 (6) 24 2 2 2
+ 23 24 1 1 1
+H003 (8) 23 1 1 1
+H005 (10) 23 1 1 1
+H000 (9)* 24 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /-------- H002
+ /----------------------15
+ | \-------- H009
+ |
+ | /-------- H007
+ /-------19 /------16
+ | | | \-------- H011
+ | | /------17
+ | | | \---------------- H012
+ /------20 \------18
+ | | \------------------------ H006
+ | |
+ /------21 \----------------------------------------- H008
+ | |
+ /------22 \------------------------------------------------- H014
+ | |
+ | \--------------------------------------------------------- H001
+ |
+ +----------------------------------------------------------------- H010
+ |
+-------24----------------------------------------------------------------- H013
+ |
+ | /-------- H003
+ +-------------------------------------------------------23
+ | \-------- H005
+ |
+ \----------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_24 --> node_22 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_22 --> node_21 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_21 --> node_20 10 1 1.000 2 ==> 1
+ node_20 --> node_19 9 1 1.000 2 ==> 1
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_18 --> node_17 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 ==> 1
+ node_17 --> H012 11 1 0.333 2 --> 1
+ node_18 --> H006 11 1 0.333 2 --> 1
+ node_20 --> H008 11 1 0.333 2 --> 1
+ node_24 --> H010 5 1 1.000 2 ==> 1
+ node_24 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ node_24 --> node_23 3 1 1.000 2 ==> 1
+ node_23 --> H003 4 1 1.000 2 ==> 1
+ node_23 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 85:
+
+Branch lengths and linkages for tree #85
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 25 root 0 0 0
+ 23 25 0 0 2
+ 22 23 2 2 2
+ 21 22 3 1 3
+ 20 21 1 1 2
+ 19 20 1 1 1
+ 15 19 0 0 1
+H002 (1) 15 0 0 0
+H009 (12) 15 1 1 1
+ 18 19 0 0 1
+ 17 18 2 2 2
+ 16 17 0 0 1
+H007 (3) 16 1 1 1
+H011 (14) 16 0 0 0
+H012 (11) 17 1 0 1
+H006 (13) 18 1 0 1
+H008 (4) 20 1 0 1
+H014 (5) 21 0 0 0
+H001 (7) 22 0 0 2
+H013 (6) 23 2 0 2
+H010 (2) 25 1 1 1
+ 24 25 1 1 1
+H003 (8) 24 1 1 1
+H005 (10) 24 1 1 1
+H000 (9)* 25 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /------- H002
+ /--------------------15
+ | \------- H009
+ |
+ | /------- H007
+ /-----19 /------16
+ | | | \------- H011
+ | | /-----17
+ | | | \--------------- H012
+ /------20 \-----18
+ | | \---------------------- H006
+ | |
+ /-----21 \------------------------------------ H008
+ | |
+ /-----22 \-------------------------------------------- H014
+ | |
+ /------23 \--------------------------------------------------- H001
+ | |
+ | \---------------------------------------------------------- H013
+ |
+ +------------------------------------------------------------------ H010
+------25
+ | /------- H003
+ +---------------------------------------------------------24
+ | \------- H005
+ |
+ \------------------------------------------------------------------ H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_22 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_22 --> node_21 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_21 --> node_20 10 1 1.000 2 ==> 1
+ node_20 --> node_19 9 1 1.000 2 ==> 1
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_18 --> node_17 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 ==> 1
+ node_17 --> H012 11 1 0.333 2 --> 1
+ node_18 --> H006 11 1 0.333 2 --> 1
+ node_20 --> H008 11 1 0.333 2 --> 1
+ node_23 --> H013 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ node_25 --> H010 5 1 1.000 2 ==> 1
+ node_25 --> node_24 3 1 1.000 2 ==> 1
+ node_24 --> H003 4 1 1.000 2 ==> 1
+ node_24 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 86:
+
+Branch lengths and linkages for tree #86
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 24 root 0 0 0
+ 22 24 0 0 2
+ 21 22 2 2 2
+ 20 21 3 1 3
+ 19 20 1 1 1
+ 18 19 1 1 1
+H002 (1) 18 0 0 0
+ 17 18 0 0 1
+ 16 17 2 2 2
+ 15 16 0 0 1
+H007 (3) 15 1 1 1
+H011 (14) 15 0 0 0
+H012 (11) 16 1 0 1
+H006 (13) 17 1 0 1
+H009 (12) 18 1 1 1
+H008 (4) 19 1 1 1
+H014 (5) 20 0 0 0
+H001 (7) 21 0 0 2
+H013 (6) 22 2 0 2
+H010 (2) 24 1 1 1
+ 23 24 1 1 1
+H003 (8) 23 1 1 1
+H005 (10) 23 1 1 1
+H000 (9)* 24 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /----------------------------- H002
+ |
+ | /------- H007
+ | /------15
+ | | \------- H011
+ /-----18 /-----16
+ | | | \--------------- H012
+ | +-----17
+ | | \---------------------- H006
+ /------19 |
+ | | \----------------------------- H009
+ | |
+ /-----20 \------------------------------------ H008
+ | |
+ /-----21 \-------------------------------------------- H014
+ | |
+ /------22 \--------------------------------------------------- H001
+ | |
+ | \---------------------------------------------------------- H013
+ |
+ +------------------------------------------------------------------ H010
+------24
+ | /------- H003
+ +---------------------------------------------------------23
+ | \------- H005
+ |
+ \------------------------------------------------------------------ H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_21 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_21 --> node_20 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_20 --> node_19 10 1 1.000 2 ==> 1
+ node_19 --> node_18 9 1 1.000 2 ==> 1
+ node_17 --> node_16 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ node_16 --> H012 11 1 0.333 2 --> 1
+ node_17 --> H006 11 1 0.333 2 --> 1
+ node_18 --> H009 12 1 0.333 2 ==> 1
+ node_19 --> H008 11 1 0.333 2 ==> 1
+ node_22 --> H013 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ node_24 --> H010 5 1 1.000 2 ==> 1
+ node_24 --> node_23 3 1 1.000 2 ==> 1
+ node_23 --> H003 4 1 1.000 2 ==> 1
+ node_23 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 87:
+
+Branch lengths and linkages for tree #87
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 21 23 2 2 2
+ 20 21 3 3 3
+ 19 20 1 1 2
+ 18 19 1 1 1
+ 15 18 0 0 1
+H002 (1) 15 0 0 0
+H009 (12) 15 1 1 1
+ 17 18 2 2 2
+ 16 17 0 0 1
+H007 (3) 16 1 1 1
+H011 (14) 16 0 0 0
+H012 (11) 17 1 0 1
+H006 (13) 18 1 0 1
+H008 (4) 19 1 0 1
+H014 (5) 20 0 0 0
+H001 (7) 21 0 0 0
+H010 (2) 23 1 1 1
+H013 (6) 23 2 2 2
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (10) 22 1 1 1
+H000 (9)* 23 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /--------- H002
+ /----------------15
+ | \--------- H009
+ |
+ | /--------- H007
+ | /-------16
+ /--------18 | \--------- H011
+ | +-------17
+ | | \------------------ H012
+ /-------19 |
+ | | \--------------------------- H006
+ | |
+ /-------20 \------------------------------------- H008
+ | |
+ /-------21 \---------------------------------------------- H014
+ | |
+ | \------------------------------------------------------- H001
+ |
+ +---------------------------------------------------------------- H010
+ |
+--------23---------------------------------------------------------------- H013
+ |
+ | /--------- H003
+ +-----------------------------------------------------22
+ | \--------- H005
+ |
+ \---------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_21 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_21 --> node_20 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_20 --> node_19 10 1 1.000 2 ==> 1
+ node_19 --> node_18 9 1 1.000 2 ==> 1
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_18 --> node_17 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 ==> 1
+ node_17 --> H012 11 1 0.333 2 --> 1
+ node_18 --> H006 11 1 0.333 2 --> 1
+ node_19 --> H008 11 1 0.333 2 --> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+ node_23 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 88:
+
+Branch lengths and linkages for tree #88
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 24 root 0 0 0
+ 22 24 0 0 2
+ 21 22 2 2 2
+ 20 21 3 1 3
+ 19 20 1 1 2
+ 18 19 1 1 1
+ 15 18 0 0 1
+H002 (1) 15 0 0 0
+H009 (12) 15 1 1 1
+ 17 18 2 2 2
+ 16 17 0 0 1
+H007 (3) 16 1 1 1
+H011 (14) 16 0 0 0
+H012 (11) 17 1 0 1
+H006 (13) 18 1 0 1
+H008 (4) 19 1 0 1
+H014 (5) 20 0 0 0
+H001 (7) 21 0 0 2
+H013 (6) 22 2 0 2
+H010 (2) 24 1 1 1
+ 23 24 1 1 1
+H003 (8) 23 1 1 1
+H005 (10) 23 1 1 1
+H000 (9)* 24 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /-------- H002
+ /--------------15
+ | \-------- H009
+ |
+ | /-------- H007
+ | /------16
+ /------18 | \-------- H011
+ | +------17
+ | | \---------------- H012
+ /-------19 |
+ | | \------------------------ H006
+ | |
+ /------20 \-------------------------------- H008
+ | |
+ /------21 \----------------------------------------- H014
+ | |
+ /------22 \------------------------------------------------- H001
+ | |
+ | \--------------------------------------------------------- H013
+ |
+ +----------------------------------------------------------------- H010
+-------24
+ | /-------- H003
+ +-------------------------------------------------------23
+ | \-------- H005
+ |
+ \----------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_21 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_21 --> node_20 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_20 --> node_19 10 1 1.000 2 ==> 1
+ node_19 --> node_18 9 1 1.000 2 ==> 1
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_18 --> node_17 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 ==> 1
+ node_17 --> H012 11 1 0.333 2 --> 1
+ node_18 --> H006 11 1 0.333 2 --> 1
+ node_19 --> H008 11 1 0.333 2 --> 1
+ node_22 --> H013 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ node_24 --> H010 5 1 1.000 2 ==> 1
+ node_24 --> node_23 3 1 1.000 2 ==> 1
+ node_23 --> H003 4 1 1.000 2 ==> 1
+ node_23 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 89:
+
+Branch lengths and linkages for tree #89
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 21 23 2 2 2
+ 20 21 3 3 3
+ 19 20 1 1 1
+ 18 19 1 1 1
+H002 (1) 18 0 0 0
+ 17 18 0 0 1
+ 16 17 2 2 2
+ 15 16 0 0 1
+H007 (3) 15 1 1 1
+H011 (14) 15 0 0 0
+H012 (11) 16 1 0 1
+H006 (13) 17 1 0 1
+H009 (12) 18 1 1 1
+H008 (4) 19 1 1 1
+H014 (5) 20 0 0 0
+H001 (7) 21 0 0 0
+H010 (2) 23 1 1 1
+H013 (6) 23 2 2 2
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (10) 22 1 1 1
+H000 (9)* 23 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /-------------------------------- H002
+ |
+ | /-------- H007
+ | /------15
+ | | \-------- H011
+ /-------18 /------16
+ | | | \---------------- H012
+ | +------17
+ | | \------------------------ H006
+ /------19 |
+ | | \-------------------------------- H009
+ | |
+ /------20 \----------------------------------------- H008
+ | |
+ /------21 \------------------------------------------------- H014
+ | |
+ | \--------------------------------------------------------- H001
+ |
+ +----------------------------------------------------------------- H010
+ |
+-------23----------------------------------------------------------------- H013
+ |
+ | /-------- H003
+ +-------------------------------------------------------22
+ | \-------- H005
+ |
+ \----------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_21 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_21 --> node_20 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_20 --> node_19 10 1 1.000 2 ==> 1
+ node_19 --> node_18 9 1 1.000 2 ==> 1
+ node_17 --> node_16 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ node_16 --> H012 11 1 0.333 2 --> 1
+ node_17 --> H006 11 1 0.333 2 --> 1
+ node_18 --> H009 12 1 0.333 2 ==> 1
+ node_19 --> H008 11 1 0.333 2 ==> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+ node_23 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
diff --git a/trunk/test/paup/outgr_absent/association/test.tree b/trunk/test/paup/outgr_absent/association/test.tree
new file mode 100644
index 0000000000000000000000000000000000000000..899a0035b4d9f79e8a33258920c9f90013899e0b
--- /dev/null
+++ b/trunk/test/paup/outgr_absent/association/test.tree
@@ -0,0 +1,120 @@
+#NEXUS
+
+Begin trees; [Treefile saved Thu Jan 12 21:57:50 2006]
+[!
+>Data file = /home/cbardel/recherche/logiciel/altree/test/paup/outgr_absent/association/caco.paup
+>Heuristic search settings:
+> Optimality criterion = parsimony
+> Character-status summary:
+> Of 12 total characters:
+> All characters are of type 'unord'
+> All characters have equal weight
+> 2 characters are parsimony-uninformative
+> Number of parsimony-informative characters = 10
+> Starting tree(s) obtained via stepwise addition
+> Addition sequence: simple (reference taxon = H002)
+> Number of trees held at each step during stepwise addition = 1
+> Branch-swapping algorithm: tree-bisection-reconnection (TBR)
+> Steepest descent option not in effect
+> 'MaxTrees' setting = 2000 (will not be increased)
+> Branches collapsed (creating polytomies) if maximum branch length is zero
+> 'MulTrees' option in effect
+> Topological constraints not enforced
+> Trees are unrooted
+>
+>Heuristic search completed
+> Total number of rearrangements tried = 90130
+> Score of best tree(s) found = 20
+> Number of trees retained = 89
+> Time used = <1 sec (CPU time = 0.12 sec)
+]
+tree PAUP_1 = [&R] (H000,(((H002,(H007,H012,H011),(H008,H006),H009),H014),H013),H010,H001,(H003,H005));
+tree PAUP_2 = [&R] (H000,((((H002,(H008,H006),H009),(H007,H012,H011)),H014),H013),H010,H001,(H003,H005));
+tree PAUP_3 = [&R] (H000,((((H002,(H007,H012,H011),(H008,H006),H009),H014),H013),H001),H010,(H003,H005));
+tree PAUP_4 = [&R] (H000,(((H002,((H007,(H012,H011)),H009),(H008,H006)),H014),H013),H010,H001,(H003,H005));
+tree PAUP_5 = [&R] (H000,((((H002,(H008,H006),H009),H014),(H007,H012,H011)),H013),H010,H001,(H003,H005));
+tree PAUP_6 = [&R] (H000,(((H002,(((H007,H011),H012),(H008,H006)),H009),H014),H013),H010,H001,(H003,H005));
+tree PAUP_7 = [&R] (H000,(((H002,(((H007,H011),H012),H008,H006),H009),H014),H013),H010,H001,(H003,H005));
+tree PAUP_8 = [&R] (H000,((((H002,((H007,(H012,H011)),H009)),(H008,H006)),H014),H013),H010,H001,(H003,H005));
+tree PAUP_9 = [&R] (H000,((((((H002,(H008,H006)),H009),H007),H012,H011),H014),H013),H010,H001,(H003,H005));
+tree PAUP_10 = [&R] (H000,((((H002,(H008,H006),H009),H007,H012,H011),H014),H013),H010,H001,(H003,H005));
+tree PAUP_11 = [&R] (H000,(((((H002,((H007,(H012,H011)),H009)),H006),H008),H014),H013),H010,H001,(H003,H005));
+tree PAUP_12 = [&R] (H000,(((H002,(H008,H006),H014,H009),H007,H012,H011),H013),H010,H001,(H003,H005));
+tree PAUP_13 = [&R] (H000,(((H002,(H007,H012,H011),(H008,H006),H009),H014),H001),H010,H013,(H003,H005));
+tree PAUP_14 = [&R] (H000,((((H002,(H007,H012,H011),(H008,H006),H009),H014),H001),H013),H010,(H003,H005));
+tree PAUP_15 = [&R] (H000,((((H002,(H007,H012,H011),H009),(H008,H006)),H014),H013),H010,H001,(H003,H005));
+tree PAUP_16 = [&R] (H000,((((H002,(H007,H012,H011),H009,H006),H008),H014),H013),H010,H001,(H003,H005));
+tree PAUP_17 = [&R] (H000,(((((H002,(H008,H006),H009),(H007,H012,H011)),H014),H013),H001),H010,(H003,H005));
+tree PAUP_18 = [&R] (H000,(((((H002,(H007,H012,H011),H009),(H008,H006)),H014),H013),H001),H010,(H003,H005));
+tree PAUP_19 = [&R] (H000,((((((H002,(H007,H012,H011),H009),H006),H008),H014),H013),H001),H010,(H003,H005));
+tree PAUP_20 = [&R] (H000,((((H002,(((H007,H011),H012),(H008,H006)),H009),H014),H013),H001),H010,(H003,H005));
+tree PAUP_21 = [&R] (H000,((((H002,(((H007,H011),H012),H008,H006),H009),H014),H013),H001),H010,(H003,H005));
+tree PAUP_22 = [&R] (H000,((((H002,((H007,(H012,H011)),H009),(H008,H006)),H014),H013),H001),H010,(H003,H005));
+tree PAUP_23 = [&R] (H000,((((((H002,H009),(H008,H006)),H012),H007,H011),H014),H013),H010,H001,(H003,H005));
+tree PAUP_24 = [&R] (H000,(((((H002,H009),(H008,H006)),H014),(H007,H012,H011)),H013),H010,H001,(H003,H005));
+tree PAUP_25 = [&R] (H000,((((((H002,H009),H008,H006),H012),H007,H011),H014),H013),H010,H001,(H003,H005));
+tree PAUP_26 = [&R] (H000,((((((H002,H009),H006),H008),H014),(H007,H012,H011)),H013),H010,H001,(H003,H005));
+tree PAUP_27 = [&R] (H000,(((H002,((H008,H006),H014),H009),H007,H012,H011),H013),H010,H001,(H003,H005));
+tree PAUP_28 = [&R] (H000,(((H002,((H008,H014),H006),H009),H007,H012,H011),H013),H010,H001,(H003,H005));
+tree PAUP_29 = [&R] (H000,(((((H002,(H007,H012,H011),H009,H006),H008),H014),H013),H001),H010,(H003,H005));
+tree PAUP_30 = [&R] (H000,((((H002,H009),(H008,H006),H014),(H007,H012,H011)),H013),H010,H001,(H003,H005));
+tree PAUP_31 = [&R] (H000,(((((H002,((H007,(H012,H011)),H009)),(H008,H006)),H014),H013),H001),H010,(H003,H005));
+tree PAUP_32 = [&R] (H000,(((((H002,H009),((((H007,H011),H012),H006),H008)),H014),H013),H001),H010,(H003,H005));
+tree PAUP_33 = [&R] (H000,((((H002,((H007,(H012,H011)),H009),H006),H008),H014),H013),H010,H001,(H003,H005));
+tree PAUP_34 = [&R] (H000,(((H002,((H007,(H012,H011)),H009),(H008,H006)),H014),H001),H010,H013,(H003,H005));
+tree PAUP_35 = [&R] (H000,(((((H002,(H008,H006),H014),H009),H007),H012,H011),H013),H010,H001,(H003,H005));
+tree PAUP_36 = [&R] (H000,((((H002,((H007,(H012,H011)),H009),(H008,H006)),H014),H001),H013),H010,(H003,H005));
+tree PAUP_37 = [&R] (H000,(((((H002,H014,H009),(H008,H006)),H012),H007,H011),H013),H010,H001,(H003,H005));
+tree PAUP_38 = [&R] (H000,((((H002,H009),((H008,H006),H014)),(H007,H012,H011)),H013),H010,H001,(H003,H005));
+tree PAUP_39 = [&R] (H000,(((((H002,H009,H006),H008),H014),(H007,H012,H011)),H013),H010,H001,(H003,H005));
+tree PAUP_40 = [&R] (H000,((((H002,H009,H006),(H008,H014)),(H007,H012,H011)),H013),H010,H001,(H003,H005));
+tree PAUP_41 = [&R] (H000,((((H002,H009,H006),H008,H014),(H007,H012,H011)),H013),H010,H001,(H003,H005));
+tree PAUP_42 = [&R] (H000,(((((H002,H014,H009),H008,H006),H012),H007,H011),H013),H010,H001,(H003,H005));
+tree PAUP_43 = [&R] (H000,((((((H002,H009),((H007,H011),H012)),H006),H008),H014),H013),H010,H001,(H003,H005));
+tree PAUP_44 = [&R] (H000,((((H002,H009),((((H007,H011),H012),H006),H008)),H014),H013),H010,H001,(H003,H005));
+tree PAUP_45 = [&R] (H000,(((((H002,H009),(((H007,H011),H012),H006)),H008),H014),H013),H010,H001,(H003,H005));
+tree PAUP_46 = [&R] (H000,(((H002,(((H007,H011),H012),(H008,H006)),H009),H014),H001),H010,H013,(H003,H005));
+tree PAUP_47 = [&R] (H000,((((H002,(((H007,H011),H012),(H008,H006)),H009),H014),H001),H013),H010,(H003,H005));
+tree PAUP_48 = [&R] (H000,(((((H002,(H007,H012,H011),H009),H006),H008),H014),H013),H010,H001,(H003,H005));
+tree PAUP_49 = [&R] (H000,((((H002,((H007,(H012,H011)),H009)),(H008,H006)),H014),H001),H010,H013,(H003,H005));
+tree PAUP_50 = [&R] (H000,(((((H002,((H008,H006),H014)),H009),H007),H012,H011),H013),H010,H001,(H003,H005));
+tree PAUP_51 = [&R] (H000,(((((H002,((H007,(H012,H011)),H009)),(H008,H006)),H014),H001),H013),H010,(H003,H005));
+tree PAUP_52 = [&R] (H000,(((((H002,((H008,H014),H006)),H009),H007),H012,H011),H013),H010,H001,(H003,H005));
+tree PAUP_53 = [&R] (H000,(((((H002,((H007,(H012,H011)),H009)),H006),H008),H014),H001),H010,H013,(H003,H005));
+tree PAUP_54 = [&R] (H000,(((((H002,H009),((H007,H011),H012),H006),H008),H014),H013),H010,H001,(H003,H005));
+tree PAUP_55 = [&R] (H000,((((((H002,((H007,(H012,H011)),H009)),H006),H008),H014),H013),H001),H010,(H003,H005));
+tree PAUP_56 = [&R] (H000,((((((H002,((H007,(H012,H011)),H009)),H006),H008),H014),H001),H013),H010,(H003,H005));
+tree PAUP_57 = [&R] (H000,(((((((H002,H009),H014),H008),H006),H012),H007,H011),H013),H010,H001,(H003,H005));
+tree PAUP_58 = [&R] (H000,(((H002,(H008,H014),H009,H006),H007,H012,H011),H013),H010,H001,(H003,H005));
+tree PAUP_59 = [&R] (H000,((((H002,(H007,H012,H011),H009),(H008,H006)),H014),H001),H010,H013,(H003,H005));
+tree PAUP_60 = [&R] (H000,((((H002,((H007,(H012,H011)),H009),H006),H008),H014),H001),H010,H013,(H003,H005));
+tree PAUP_61 = [&R] (H000,(((H002,(((H007,H011),H012),H008,H006),H009),H014),H001),H010,H013,(H003,H005));
+tree PAUP_62 = [&R] (H000,((((H002,(((H007,H011),H012),H008,H006),H009),H014),H001),H013),H010,(H003,H005));
+tree PAUP_63 = [&R] (H000,(((((H002,(H007,H012,H011),H009),(H008,H006)),H014),H001),H013),H010,(H003,H005));
+tree PAUP_64 = [&R] (H000,(((((H002,(H007,H012,H011),H009,H006),H008),H014),H001),H013),H010,(H003,H005));
+tree PAUP_65 = [&R] (H000,((((H002,(H007,H012,H011),H009,H006),H008),H014),H001),H010,H013,(H003,H005));
+tree PAUP_66 = [&R] (H000,((((H002,(((H007,H011),H012),H006),H009),H008),H014),H013),H010,H001,(H003,H005));
+tree PAUP_67 = [&R] (H000,(((((((H002,H009),((H007,H011),H012)),H006),H008),H014),H013),H001),H010,(H003,H005));
+tree PAUP_68 = [&R] (H000,(((((H002,(((H007,H011),H012),H006),H009),H008),H014),H013),H001),H010,(H003,H005));
+tree PAUP_69 = [&R] (H000,(((((H002,(H007,H012,H011),H009),H006),H008),H014),H001),H010,H013,(H003,H005));
+tree PAUP_70 = [&R] (H000,((((((H002,(H007,H012,H011),H009),H006),H008),H014),H001),H013),H010,(H003,H005));
+tree PAUP_71 = [&R] (H000,((((((H002,H009),(((H007,H011),H012),H006)),H008),H014),H013),H001),H010,(H003,H005));
+tree PAUP_72 = [&R] (H000,((((((H002,H009),((H007,H011),H012),H006),H008),H014),H013),H001),H010,(H003,H005));
+tree PAUP_73 = [&R] (H000,(((((H002,((H007,(H012,H011)),H009),H006),H008),H014),H013),H001),H010,(H003,H005));
+tree PAUP_74 = [&R] (H000,(((((H002,H009),((H008,H014),H006)),H012),H007,H011),H013),H010,H001,(H003,H005));
+tree PAUP_75 = [&R] (H000,((((((H002,H009),(H008,H014)),H006),H012),H007,H011),H013),H010,H001,(H003,H005));
+tree PAUP_76 = [&R] (H000,(((((H002,H009),(H008,H014),H006),H012),H007,H011),H013),H010,H001,(H003,H005));
+tree PAUP_77 = [&R] (H000,((((H002,H009),((((H007,H011),H012),H006),H008)),H014),H001),H010,H013,(H003,H005));
+tree PAUP_78 = [&R] (H000,(((((H002,H009),((((H007,H011),H012),H006),H008)),H014),H001),H013),H010,(H003,H005));
+tree PAUP_79 = [&R] (H000,(((((H002,((H007,(H012,H011)),H009),H006),H008),H014),H001),H013),H010,(H003,H005));
+tree PAUP_80 = [&R] (H000,(((((H002,(H008,H014),H006),H009),H007),H012,H011),H013),H010,H001,(H003,H005));
+tree PAUP_81 = [&R] (H000,(((((H002,(H008,H014),H009),H006),H012),H007,H011),H013),H010,H001,(H003,H005));
+tree PAUP_82 = [&R] (H000,((((((H002,H009),((H007,H011),H012)),H006),H008),H014),H001),H010,H013,(H003,H005));
+tree PAUP_83 = [&R] (H000,(((((((H002,H009),((H007,H011),H012)),H006),H008),H014),H001),H013),H010,(H003,H005));
+tree PAUP_84 = [&R] (H000,(((((H002,H009),(((H007,H011),H012),H006)),H008),H014),H001),H010,H013,(H003,H005));
+tree PAUP_85 = [&R] (H000,((((((H002,H009),(((H007,H011),H012),H006)),H008),H014),H001),H013),H010,(H003,H005));
+tree PAUP_86 = [&R] (H000,(((((H002,(((H007,H011),H012),H006),H009),H008),H014),H001),H013),H010,(H003,H005));
+tree PAUP_87 = [&R] (H000,(((((H002,H009),((H007,H011),H012),H006),H008),H014),H001),H010,H013,(H003,H005));
+tree PAUP_88 = [&R] (H000,((((((H002,H009),((H007,H011),H012),H006),H008),H014),H001),H013),H010,(H003,H005));
+tree PAUP_89 = [&R] (H000,((((H002,(((H007,H011),H012),H006),H009),H008),H014),H001),H010,H013,(H003,H005));
+End;
diff --git a/trunk/test/paup/outgr_absent/localisation/caco.paup b/trunk/test/paup/outgr_absent/localisation/caco.paup
new file mode 100644
index 0000000000000000000000000000000000000000..b0588947ac703ddf45a500aec7cd3cd890163899
--- /dev/null
+++ b/trunk/test/paup/outgr_absent/localisation/caco.paup
@@ -0,0 +1,39 @@
+#Nexus
+Begin data;
+dimension ntax=14 nchar=12;
+format symbols="0123456789" missing=?;
+matrix
+H002 112221111122
+H010 222212222222
+H007 222221111121
+H008 112221112112
+H014 112221112222
+H013 222221122222
+H001 112222222222
+H003 221122222222
+H000 222222222222
+H005 221222222221
+H012 222221111112
+H009 112221111121
+H006 112221111112
+H011 222221111122
+;
+end;
+begin assumptions;
+[ancstates *anc vector = 2222222222221;]
+end;
+begin paup;
+set nowarnreset autoclose maxtrees = 2000 increase= no [- Auto AutoInc = 100] monitor = no taxlabels = full
+root=outgroup warnroot=no opt=deltran [- acctran];
+outgroup H000;
+hsearch;
+savetrees from=1 to=1000 file= test.tree root=yes format=altnexus;
+cleartrees nowarn=yes;
+gettrees rooted=yes file=test.tree;
+log file = test.res.log replace= yes [- no];
+describetrees all /plot=cladogram [- phylogram] brlens=yes
+rootmethod=outgroup apolist=yes;
+log stop;
+end;
+quit;
+[WARNING, this file is designed for bi-allelic data. If it is not the case, you may have to modify this input file, for example by specifying the ordered option in the typeset command in the assumption block]
diff --git a/trunk/test/paup/outgr_absent/localisation/nb_cas_control.txt b/trunk/test/paup/outgr_absent/localisation/nb_cas_control.txt
new file mode 100644
index 0000000000000000000000000000000000000000..ec9b7d90b0f6fc3983260c38f77f3bd42b037c09
--- /dev/null
+++ b/trunk/test/paup/outgr_absent/localisation/nb_cas_control.txt
@@ -0,0 +1,13 @@
+H002 m008 c006
+H010 m007 c005
+H007 m007 c013
+H008 m009 c002
+H014 m004 c002
+H013 m002 c004
+H001 m011 c009
+H003 m005 c006
+H005 m007 c007
+H012 m001 c004
+H009 m008 c002
+H006 m028 c013
+H011 m005 c001
diff --git a/trunk/test/paup/outgr_absent/localisation/run-prog b/trunk/test/paup/outgr_absent/localisation/run-prog
new file mode 100755
index 0000000000000000000000000000000000000000..0055e0fbedf11f540d30f758b02f5b6381657f02
--- /dev/null
+++ b/trunk/test/paup/outgr_absent/localisation/run-prog
@@ -0,0 +1,19 @@
+#!/bin/sh -x
+
+# To add the character S
+# p=102 case haplotypes/176 haplotypes
+# The outgroup is not specified in the file nb_cas_control.txt. The
+# option --outgroup must then be used
+../../../../altree-add-S -i caco.paup -j \
+nb_cas_control.txt -o et_caco.paup -e 1 -t SNP -p 0.58 \
+--outgroup H000
+
+# To run paup on the file containing the character S
+paup et_caco.paup
+
+# To perform the localisation test
+# All 89 equiparsimonious trees are analysed
+../../../../altree -i test.res.log \
+-j nb_cas_control.txt -t SNP -p paup --tree-to-analyse 89 \
+--s-site-number 13 --s-site-characters "0->1" \
+--co-evo double -l -o caco.loc
diff --git a/trunk/test/paup/outgr_present/association/1_caco.asso b/trunk/test/paup/outgr_present/association/1_caco.asso
new file mode 100644
index 0000000000000000000000000000000000000000..a68109cbd444bbdf938b499e6952929ed7d66a2b
--- /dev/null
+++ b/trunk/test/paup/outgr_present/association/1_caco.asso
@@ -0,0 +1,58 @@
+
+ /----* H002 case/control:8/6
+ | /----* H007 case/control:7/13
+ | | Site: 12 Sens: 2-->1
+ | |----* H012 case/control:1/4
+ | | Site: 11 Sens: 2-->1
+ |----* 15 case/control:13/18
+ | | Site: 1 Sens: 1-->2
+ | | Site: 2 Sens: 1-->2
+ | \----* H011 case/control:5/1
+ /----* 17 case/control:66/41
+ | | Site: 10 Sens: 2-->1
+ | | Site: 9 Sens: 2-->1
+ | | /----* H008 case/control:9/2
+ | | | Site: 9 Sens: 1-->2
+ | |----* 16 case/control:37/15
+ | | | Site: 11 Sens: 2-->1
+ | | \----* H006 case/control:28/13
+ | \----* H009 case/control:8/2
+ | Site: 12 Sens: 2-->1
+ /----* 18 case/control:70/43
+ | | Site: 8 Sens: 2-->1
+ | | Site: 1 Sens: 2-->1
+ | | Site: 2 Sens: 2-->1
+ | \----* H014 case/control:4/2
+ /----* 19 case/control:72/47
+ | | Site: 6 Sens: 2-->1
+ | | Site: 7 Sens: 2-->1
+ | \----* H013 case/control:2/4
+ |----* H010 case/control:7/5
+ | Site: 5 Sens: 2-->1
+ |----* H001 case/control:11/9
+ | Site: 1 Sens: 2-->1
+ | Site: 2 Sens: 2-->1
+-----* 21 case/control:200/200
+ |
+ | [0] ddl=4 chi2=9.33 p_value_chi2=0.0535
+ | [1] ddl=6 chi2=11.24 p_value_chi2=0.083
+ | [2] ddl=7 chi2=11.30 p_value_chi2=0.112
+ | [3] ddl=10 chi2=19.46 p_value_chi2=0.035
+ | [4] ddl=13 chi2=25.55 p_value_chi2=0.015
+ | /----* H003 case/control:5/6
+ | | Site: 4 Sens: 2-->1
+ |----* 20 case/control:12/13
+ | | Site: 3 Sens: 2-->1
+ | \----* H005 case/control:7/7
+ | Site: 12 Sens: 2-->1
+ \----* H000 case/control:98/126
+
+ Number of permutation: 1
+
+p_val for each level:
+level 1 p-value (non corrected) 0
+level 2 p-value (non corrected) 0
+level 3 p-value (non corrected) 0
+level 4 p-value (non corrected) 0
+level 5 p-value (non corrected) 0
+corrected minimal p_value in the tree: 0
diff --git a/trunk/test/paup/outgr_present/association/caco.paup b/trunk/test/paup/outgr_present/association/caco.paup
new file mode 100644
index 0000000000000000000000000000000000000000..b0588947ac703ddf45a500aec7cd3cd890163899
--- /dev/null
+++ b/trunk/test/paup/outgr_present/association/caco.paup
@@ -0,0 +1,39 @@
+#Nexus
+Begin data;
+dimension ntax=14 nchar=12;
+format symbols="0123456789" missing=?;
+matrix
+H002 112221111122
+H010 222212222222
+H007 222221111121
+H008 112221112112
+H014 112221112222
+H013 222221122222
+H001 112222222222
+H003 221122222222
+H000 222222222222
+H005 221222222221
+H012 222221111112
+H009 112221111121
+H006 112221111112
+H011 222221111122
+;
+end;
+begin assumptions;
+[ancstates *anc vector = 2222222222221;]
+end;
+begin paup;
+set nowarnreset autoclose maxtrees = 2000 increase= no [- Auto AutoInc = 100] monitor = no taxlabels = full
+root=outgroup warnroot=no opt=deltran [- acctran];
+outgroup H000;
+hsearch;
+savetrees from=1 to=1000 file= test.tree root=yes format=altnexus;
+cleartrees nowarn=yes;
+gettrees rooted=yes file=test.tree;
+log file = test.res.log replace= yes [- no];
+describetrees all /plot=cladogram [- phylogram] brlens=yes
+rootmethod=outgroup apolist=yes;
+log stop;
+end;
+quit;
+[WARNING, this file is designed for bi-allelic data. If it is not the case, you may have to modify this input file, for example by specifying the ordered option in the typeset command in the assumption block]
diff --git a/trunk/test/paup/outgr_present/association/nb_cas_control.txt b/trunk/test/paup/outgr_present/association/nb_cas_control.txt
new file mode 100644
index 0000000000000000000000000000000000000000..96b01484da94e596349ac0f87a9439e609ea02a0
--- /dev/null
+++ b/trunk/test/paup/outgr_present/association/nb_cas_control.txt
@@ -0,0 +1,14 @@
+H002 m008 c006
+H010 m007 c005
+H007 m007 c013
+H008 m009 c002
+H014 m004 c002
+H013 m002 c004
+H001 m011 c009
+H003 m005 c006
+H000 m098 c126
+H005 m007 c007
+H012 m001 c004
+H009 m008 c002
+H006 m028 c013
+H011 m005 c001
diff --git a/trunk/test/paup/outgr_present/association/run_altree b/trunk/test/paup/outgr_present/association/run_altree
new file mode 100755
index 0000000000000000000000000000000000000000..006f2eb6849a86b38225fde46f8f3c01a89691c0
--- /dev/null
+++ b/trunk/test/paup/outgr_present/association/run_altree
@@ -0,0 +1,8 @@
+#!/bin/sh -x
+
+# To run paup
+paup caco.paup
+
+# To perform the association test
+../../../../altree -i test.res.log -j nb_cas_control.txt -a -t SNP \
+ -p paup -r 1 --tree-to-analyse 1 -o 1_caco.asso
diff --git a/trunk/test/paup/outgr_present/association/test.res.log b/trunk/test/paup/outgr_present/association/test.res.log
new file mode 100644
index 0000000000000000000000000000000000000000..d132b34d92b5d44e0a5897639baa1af7663c5d21
--- /dev/null
+++ b/trunk/test/paup/outgr_present/association/test.res.log
@@ -0,0 +1,8475 @@
+
+P A U P *
+Portable version 4.0b10 for Unix
+Tue Jan 10 21:04:10 2006
+
+ -----------------------------NOTICE-----------------------------
+ This is a beta-test version. Please report any crashes,
+ apparent calculation errors, or other anomalous results.
+ There are no restrictions on publication of results obtained
+ with this version, but you should check the WWW site
+ frequently for bug announcements and/or updated versions.
+ See the README file on the distribution media for details.
+ ----------------------------------------------------------------
+
+Tree description:
+
+ Optimality criterion = parsimony
+ Character-status summary:
+ Of 12 total characters:
+ All characters are of type 'unord'
+ All characters have equal weight
+ 2 characters are parsimony-uninformative
+ Number of parsimony-informative characters = 10
+ Character-state optimization: Delayed transformation (DELTRAN)
+ AncStates = "standard"
+
+Tree number 1:
+
+Branch lengths and linkages for tree #1
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 21 root 0 0 0
+ 19 21 2 2 2
+ 18 19 3 3 3
+ 17 18 2 2 2
+H002 (1) 17 0 0 0
+ 15 17 2 2 2
+H007 (3) 15 1 1 1
+H012 (11) 15 1 1 1
+H011 (14) 15 0 0 0
+ 16 17 1 1 1
+H008 (4) 16 1 1 1
+H006 (13) 16 0 0 0
+H009 (12) 17 1 1 1
+H014 (5) 18 0 0 0
+H013 (6) 19 0 0 0
+H010 (2) 21 1 1 1
+H001 (7) 21 2 2 2
+ 20 21 1 1 1
+H003 (8) 20 1 1 1
+H005 (10) 20 1 1 1
+H000 (9)* 21 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /------------------------ H002
+ |
+ | /------------ H007
+ | |
+ +----------15------------ H012
+ | |
+ /----------17 \------------ H011
+ | |
+ | | /------------ H008
+ | +----------16
+ /-----------18 | \------------ H006
+ | | |
+ | | \------------------------ H009
+ /----------19 |
+ | | \------------------------------------ H014
+ | |
+ | \------------------------------------------------- H013
+ |
+ +------------------------------------------------------------- H010
+ |
+-----------21------------------------------------------------------------- H001
+ |
+ | /------------ H003
+ +-----------------------------------------------20
+ | \------------ H005
+ |
+ \------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_19 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_19 --> node_18 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_18 --> node_17 9 1 0.500 2 ==> 1
+ 10 1 1.000 2 ==> 1
+ node_17 --> node_15 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ node_15 --> H012 11 1 0.500 2 ==> 1
+ node_17 --> node_16 11 1 0.500 2 ==> 1
+ node_16 --> H008 9 1 0.500 1 ==> 2
+ node_17 --> H009 12 1 0.333 2 ==> 1
+ node_21 --> H010 5 1 1.000 2 ==> 1
+ node_21 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_21 --> node_20 3 1 1.000 2 ==> 1
+ node_20 --> H003 4 1 1.000 2 ==> 1
+ node_20 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 2:
+
+Branch lengths and linkages for tree #2
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 22 root 0 0 0
+ 20 22 2 2 2
+ 19 20 1 1 3
+ 18 19 2 2 2
+ 16 18 2 0 2
+H002 (1) 16 0 0 0
+ 15 16 1 1 1
+H008 (4) 15 1 1 1
+H006 (13) 15 0 0 0
+H009 (12) 16 1 1 1
+ 17 18 0 0 2
+H007 (3) 17 1 1 1
+H012 (11) 17 1 1 1
+H011 (14) 17 0 0 0
+H014 (5) 19 2 0 2
+H013 (6) 20 0 0 0
+H010 (2) 22 1 1 1
+H001 (7) 22 2 2 2
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (10) 21 1 1 1
+H000 (9)* 22 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /--------------------- H002
+ |
+ | /---------- H008
+ /--------16---------15
+ | | \---------- H006
+ | |
+ | \--------------------- H009
+ /---------18
+ | | /---------- H007
+ | | |
+ | \-------------------17---------- H012
+ /--------19 |
+ | | \---------- H011
+ | |
+ /---------20 \------------------------------------------ H014
+ | |
+ | \---------------------------------------------------- H013
+ |
+ +--------------------------------------------------------------- H010
+ |
+---------22--------------------------------------------------------------- H001
+ |
+ | /---------- H003
+ +---------------------------------------------------21
+ | \---------- H005
+ |
+ \--------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_20 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_20 --> node_19 8 1 1.000 2 ==> 1
+ node_19 --> node_18 9 1 0.500 2 ==> 1
+ 10 1 1.000 2 ==> 1
+ node_18 --> node_16 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ node_16 --> node_15 11 1 0.500 2 ==> 1
+ node_15 --> H008 9 1 0.500 1 ==> 2
+ node_16 --> H009 12 1 0.333 2 ==> 1
+ node_17 --> H007 12 1 0.333 2 ==> 1
+ node_17 --> H012 11 1 0.500 2 ==> 1
+ node_19 --> H014 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ node_22 --> H010 5 1 1.000 2 ==> 1
+ node_22 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 3:
+
+Branch lengths and linkages for tree #3
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 22 root 0 0 0
+ 20 22 0 0 2
+ 19 20 2 2 2
+ 18 19 3 1 3
+ 17 18 2 2 2
+H002 (1) 17 0 0 0
+ 15 17 2 2 2
+H007 (3) 15 1 1 1
+H012 (11) 15 1 1 1
+H011 (14) 15 0 0 0
+ 16 17 1 1 1
+H008 (4) 16 1 1 1
+H006 (13) 16 0 0 0
+H009 (12) 17 1 1 1
+H014 (5) 18 0 0 0
+H013 (6) 19 0 0 2
+H001 (7) 20 2 0 2
+H010 (2) 22 1 1 1
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (10) 21 1 1 1
+H000 (9)* 22 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /--------------------- H002
+ |
+ | /---------- H007
+ | |
+ +---------15---------- H012
+ | |
+ /--------17 \---------- H011
+ | |
+ | | /---------- H008
+ | +---------16
+ /---------18 | \---------- H006
+ | | |
+ | | \--------------------- H009
+ /--------19 |
+ | | \------------------------------- H014
+ | |
+ /---------20 \------------------------------------------ H013
+ | |
+ | \---------------------------------------------------- H001
+ |
+ +--------------------------------------------------------------- H010
+---------22
+ | /---------- H003
+ +---------------------------------------------------21
+ | \---------- H005
+ |
+ \--------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_20 --> node_19 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_19 --> node_18 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_18 --> node_17 9 1 0.500 2 ==> 1
+ 10 1 1.000 2 ==> 1
+ node_17 --> node_15 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ node_15 --> H012 11 1 0.500 2 ==> 1
+ node_17 --> node_16 11 1 0.500 2 ==> 1
+ node_16 --> H008 9 1 0.500 1 ==> 2
+ node_17 --> H009 12 1 0.333 2 ==> 1
+ node_20 --> H001 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ node_22 --> H010 5 1 1.000 2 ==> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 4:
+
+Branch lengths and linkages for tree #4
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 21 23 2 2 2
+ 20 21 3 3 3
+ 19 20 2 2 2
+H002 (1) 19 0 0 0
+ 17 19 0 0 1
+ 16 17 2 2 2
+H007 (3) 16 1 0 1
+ 15 16 0 0 1
+H012 (11) 15 1 1 1
+H011 (14) 15 0 0 0
+H009 (12) 17 1 0 1
+ 18 19 1 1 1
+H008 (4) 18 1 1 1
+H006 (13) 18 0 0 0
+H014 (5) 20 0 0 0
+H013 (6) 21 0 0 0
+H010 (2) 23 1 1 1
+H001 (7) 23 2 2 2
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (10) 22 1 1 1
+H000 (9)* 23 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /------------------------------------- H002
+ |
+ | /------------------ H007
+ | |
+ | /-------16 /--------- H012
+ | | \-------15
+ /-------19--------17 \--------- H011
+ | | |
+ | | \--------------------------- H009
+ | |
+ /-------20 | /--------- H008
+ | | \--------------------------18
+ | | \--------- H006
+ /-------21 |
+ | | \---------------------------------------------- H014
+ | |
+ | \------------------------------------------------------- H013
+ |
+ +---------------------------------------------------------------- H010
+ |
+--------23---------------------------------------------------------------- H001
+ |
+ | /--------- H003
+ +-----------------------------------------------------22
+ | \--------- H005
+ |
+ \---------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_21 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_21 --> node_20 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_20 --> node_19 9 1 0.500 2 ==> 1
+ 10 1 1.000 2 ==> 1
+ node_17 --> node_16 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 --> 1
+ node_15 --> H012 11 1 0.500 2 ==> 1
+ node_17 --> H009 12 1 0.333 2 --> 1
+ node_19 --> node_18 11 1 0.500 2 ==> 1
+ node_18 --> H008 9 1 0.500 1 ==> 2
+ node_23 --> H010 5 1 1.000 2 ==> 1
+ node_23 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 5:
+
+Branch lengths and linkages for tree #5
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 22 root 0 0 0
+ 20 22 2 2 2
+ 19 20 1 1 3
+ 17 19 2 2 2
+ 16 17 2 0 2
+H002 (1) 16 0 0 0
+ 15 16 1 1 1
+H008 (4) 15 1 1 1
+H006 (13) 15 0 0 0
+H009 (12) 16 1 1 1
+H014 (5) 17 0 0 2
+ 18 19 2 0 2
+H007 (3) 18 1 1 1
+H012 (11) 18 1 1 1
+H011 (14) 18 0 0 0
+H013 (6) 20 0 0 0
+H010 (2) 22 1 1 1
+H001 (7) 22 2 2 2
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (10) 21 1 1 1
+H000 (9)* 22 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /--------------------- H002
+ |
+ | /---------- H008
+ /--------16---------15
+ | | \---------- H006
+ | |
+ /---------17 \--------------------- H009
+ | |
+ | \------------------------------- H014
+ /--------19
+ | | /---------- H007
+ | | |
+ | \------------------------------18---------- H012
+ /---------20 |
+ | | \---------- H011
+ | |
+ | \---------------------------------------------------- H013
+ |
+ +--------------------------------------------------------------- H010
+ |
+---------22--------------------------------------------------------------- H001
+ |
+ | /---------- H003
+ +---------------------------------------------------21
+ | \---------- H005
+ |
+ \--------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_20 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_20 --> node_19 8 1 1.000 2 ==> 1
+ node_19 --> node_17 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_17 --> node_16 9 1 0.333 2 --> 1
+ 10 1 0.500 2 --> 1
+ node_16 --> node_15 11 1 0.500 2 ==> 1
+ node_15 --> H008 9 1 0.333 1 ==> 2
+ node_16 --> H009 12 1 0.333 2 ==> 1
+ node_19 --> node_18 9 1 0.333 2 --> 1
+ 10 1 0.500 2 --> 1
+ node_18 --> H007 12 1 0.333 2 ==> 1
+ node_18 --> H012 11 1 0.500 2 ==> 1
+ node_22 --> H010 5 1 1.000 2 ==> 1
+ node_22 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 6:
+
+Branch lengths and linkages for tree #6
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 21 23 2 2 2
+ 20 21 3 3 3
+ 19 20 2 2 2
+H002 (1) 19 0 0 0
+ 18 19 0 0 1
+ 16 18 2 2 2
+ 15 16 0 0 1
+H007 (3) 15 1 1 1
+H011 (14) 15 0 0 0
+H012 (11) 16 1 0 1
+ 17 18 1 0 1
+H008 (4) 17 1 1 1
+H006 (13) 17 0 0 0
+H009 (12) 19 1 1 1
+H014 (5) 20 0 0 0
+H013 (6) 21 0 0 0
+H010 (2) 23 1 1 1
+H001 (7) 23 2 2 2
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (10) 22 1 1 1
+H000 (9)* 23 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /------------------------------------- H002
+ |
+ | /--------- H007
+ | /-------15
+ | | \--------- H011
+ | /-------16
+ /-------19 | \------------------ H012
+ | +--------18
+ | | | /--------- H008
+ | | \----------------17
+ /-------20 | \--------- H006
+ | | |
+ | | \------------------------------------- H009
+ /-------21 |
+ | | \---------------------------------------------- H014
+ | |
+ | \------------------------------------------------------- H013
+ |
+ +---------------------------------------------------------------- H010
+ |
+--------23---------------------------------------------------------------- H001
+ |
+ | /--------- H003
+ +-----------------------------------------------------22
+ | \--------- H005
+ |
+ \---------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_21 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_21 --> node_20 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_20 --> node_19 9 1 0.500 2 ==> 1
+ 10 1 1.000 2 ==> 1
+ node_18 --> node_16 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ node_16 --> H012 11 1 0.500 2 --> 1
+ node_18 --> node_17 11 1 0.500 2 --> 1
+ node_17 --> H008 9 1 0.500 1 ==> 2
+ node_19 --> H009 12 1 0.333 2 ==> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+ node_23 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 7:
+
+Branch lengths and linkages for tree #7
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 22 root 0 0 0
+ 20 22 2 2 2
+ 19 20 3 3 3
+ 18 19 2 2 2
+H002 (1) 18 0 0 0
+ 17 18 1 1 1
+ 16 17 2 2 2
+ 15 16 1 1 1
+H007 (3) 15 1 1 1
+H011 (14) 15 0 0 0
+H012 (11) 16 0 0 0
+H008 (4) 17 1 1 1
+H006 (13) 17 0 0 0
+H009 (12) 18 1 1 1
+H014 (5) 19 0 0 0
+H013 (6) 20 0 0 0
+H010 (2) 22 1 1 1
+H001 (7) 22 2 2 2
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (10) 21 1 1 1
+H000 (9)* 22 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /------------------------------------- H002
+ |
+ | /--------- H007
+ | /-------15
+ | | \--------- H011
+ | /-------16
+ /-------18 | \------------------ H012
+ | | |
+ | +--------17--------------------------- H008
+ | | |
+ /-------19 | \--------------------------- H006
+ | | |
+ | | \------------------------------------- H009
+ /-------20 |
+ | | \---------------------------------------------- H014
+ | |
+ | \------------------------------------------------------- H013
+ |
+ +---------------------------------------------------------------- H010
+ |
+--------22---------------------------------------------------------------- H001
+ |
+ | /--------- H003
+ +-----------------------------------------------------21
+ | \--------- H005
+ |
+ \---------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_20 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_20 --> node_19 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_19 --> node_18 9 1 0.500 2 ==> 1
+ 10 1 1.000 2 ==> 1
+ node_18 --> node_17 11 1 0.500 2 ==> 1
+ node_17 --> node_16 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_16 --> node_15 11 1 0.500 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ node_17 --> H008 9 1 0.500 1 ==> 2
+ node_18 --> H009 12 1 0.333 2 ==> 1
+ node_22 --> H010 5 1 1.000 2 ==> 1
+ node_22 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 8:
+
+Branch lengths and linkages for tree #8
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 24 root 0 0 0
+ 22 24 2 2 2
+ 21 22 3 3 3
+ 20 21 1 1 2
+ 18 20 1 0 1
+H002 (1) 18 0 0 0
+ 17 18 0 0 1
+ 16 17 2 2 2
+H007 (3) 16 1 0 1
+ 15 16 0 0 1
+H012 (11) 15 1 1 1
+H011 (14) 15 0 0 0
+H009 (12) 17 1 0 1
+ 19 20 1 1 1
+H008 (4) 19 0 0 1
+H006 (13) 19 1 0 1
+H014 (5) 21 0 0 0
+H013 (6) 22 0 0 0
+H010 (2) 24 1 1 1
+H001 (7) 24 2 2 2
+ 23 24 1 1 1
+H003 (8) 23 1 1 1
+H005 (10) 23 1 1 1
+H000 (9)* 24 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /-------------------------------- H002
+ |
+ | /---------------- H007
+ /-------18 |
+ | | /------16 /-------- H012
+ | | | \------15
+ | \------17 \-------- H011
+ /------20 |
+ | | \------------------------ H009
+ | |
+ | | /-------- H008
+ /------21 \-------------------------------19
+ | | \-------- H006
+ | |
+ /------22 \------------------------------------------------- H014
+ | |
+ | \--------------------------------------------------------- H013
+ |
+ +----------------------------------------------------------------- H010
+ |
+-------24----------------------------------------------------------------- H001
+ |
+ | /-------- H003
+ +-------------------------------------------------------23
+ | \-------- H005
+ |
+ \----------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_24 --> node_22 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_22 --> node_21 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_21 --> node_20 10 1 1.000 2 ==> 1
+ node_20 --> node_18 9 1 0.500 2 --> 1
+ node_17 --> node_16 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 --> 1
+ node_15 --> H012 11 1 0.500 2 ==> 1
+ node_17 --> H009 12 1 0.333 2 --> 1
+ node_20 --> node_19 11 1 0.500 2 ==> 1
+ node_19 --> H006 9 1 0.500 2 --> 1
+ node_24 --> H010 5 1 1.000 2 ==> 1
+ node_24 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_24 --> node_23 3 1 1.000 2 ==> 1
+ node_23 --> H003 4 1 1.000 2 ==> 1
+ node_23 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 9:
+
+Branch lengths and linkages for tree #9
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 21 23 2 2 2
+ 20 21 1 1 1
+ 19 20 2 2 2
+ 18 19 0 0 1
+ 17 18 2 2 2
+ 16 17 0 0 1
+H002 (1) 16 0 0 0
+ 15 16 1 1 1
+H008 (4) 15 1 1 1
+H006 (13) 15 0 0 0
+H009 (12) 17 1 0 1
+H007 (3) 18 1 0 1
+H012 (11) 19 1 1 1
+H011 (14) 19 0 0 0
+H014 (5) 20 2 2 2
+H013 (6) 21 0 0 0
+H010 (2) 23 1 1 1
+H001 (7) 23 2 2 2
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (10) 22 1 1 1
+H000 (9)* 23 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /---------------- H002
+ |
+ /------16 /-------- H008
+ | \------15
+ /------17 \-------- H006
+ | |
+ /-------18 \------------------------ H009
+ | |
+ | \-------------------------------- H007
+ /------19
+ | +----------------------------------------- H012
+ | |
+ /------20 \----------------------------------------- H011
+ | |
+ /------21 \------------------------------------------------- H014
+ | |
+ | \--------------------------------------------------------- H013
+ |
+ +----------------------------------------------------------------- H010
+ |
+-------23----------------------------------------------------------------- H001
+ |
+ | /-------- H003
+ +-------------------------------------------------------22
+ | \-------- H005
+ |
+ \----------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_21 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_21 --> node_20 8 1 1.000 2 ==> 1
+ node_20 --> node_19 9 1 0.500 2 ==> 1
+ 10 1 1.000 2 ==> 1
+ node_18 --> node_17 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_16 --> node_15 11 1 0.500 2 ==> 1
+ node_15 --> H008 9 1 0.500 1 ==> 2
+ node_17 --> H009 12 1 0.333 2 --> 1
+ node_18 --> H007 12 1 0.333 2 --> 1
+ node_19 --> H012 11 1 0.500 2 ==> 1
+ node_20 --> H014 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+ node_23 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 10:
+
+Branch lengths and linkages for tree #10
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 21 root 0 0 0
+ 19 21 2 2 2
+ 18 19 1 1 1
+ 17 18 2 2 2
+ 16 17 2 2 2
+H002 (1) 16 0 0 0
+ 15 16 1 1 1
+H008 (4) 15 1 1 1
+H006 (13) 15 0 0 0
+H009 (12) 16 1 1 1
+H007 (3) 17 1 1 1
+H012 (11) 17 1 1 1
+H011 (14) 17 0 0 0
+H014 (5) 18 2 2 2
+H013 (6) 19 0 0 0
+H010 (2) 21 1 1 1
+H001 (7) 21 2 2 2
+ 20 21 1 1 1
+H003 (8) 20 1 1 1
+H005 (10) 20 1 1 1
+H000 (9)* 21 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /--------------------- H002
+ |
+ | /---------- H008
+ /--------16---------15
+ | | \---------- H006
+ | |
+ | \--------------------- H009
+ |
+ /---------17------------------------------- H007
+ | |
+ | +------------------------------- H012
+ /--------18 |
+ | | \------------------------------- H011
+ | |
+ /---------19 \------------------------------------------ H014
+ | |
+ | \---------------------------------------------------- H013
+ |
+ +--------------------------------------------------------------- H010
+ |
+---------21--------------------------------------------------------------- H001
+ |
+ | /---------- H003
+ +---------------------------------------------------20
+ | \---------- H005
+ |
+ \--------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_19 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_19 --> node_18 8 1 1.000 2 ==> 1
+ node_18 --> node_17 9 1 0.500 2 ==> 1
+ 10 1 1.000 2 ==> 1
+ node_17 --> node_16 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_16 --> node_15 11 1 0.500 2 ==> 1
+ node_15 --> H008 9 1 0.500 1 ==> 2
+ node_16 --> H009 12 1 0.333 2 ==> 1
+ node_17 --> H007 12 1 0.333 2 ==> 1
+ node_17 --> H012 11 1 0.500 2 ==> 1
+ node_18 --> H014 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_21 --> H010 5 1 1.000 2 ==> 1
+ node_21 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_21 --> node_20 3 1 1.000 2 ==> 1
+ node_20 --> H003 4 1 1.000 2 ==> 1
+ node_20 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 11:
+
+Branch lengths and linkages for tree #11
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 24 root 0 0 0
+ 22 24 2 2 2
+ 21 22 3 3 3
+ 20 21 1 1 2
+ 19 20 1 1 1
+ 18 19 0 0 1
+H002 (1) 18 0 0 0
+ 17 18 0 0 1
+ 16 17 2 2 2
+H007 (3) 16 1 0 1
+ 15 16 0 0 1
+H012 (11) 15 1 1 1
+H011 (14) 15 0 0 0
+H009 (12) 17 1 0 1
+H006 (13) 19 1 0 1
+H008 (4) 20 1 0 1
+H014 (5) 21 0 0 0
+H013 (6) 22 0 0 0
+H010 (2) 24 1 1 1
+H001 (7) 24 2 2 2
+ 23 24 1 1 1
+H003 (8) 23 1 1 1
+H005 (10) 23 1 1 1
+H000 (9)* 24 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /----------------------------- H002
+ |
+ | /--------------- H007
+ /-----18 |
+ | | /-----16 /------- H012
+ | | | \------15
+ | \-----17 \------- H011
+ /------19 |
+ | | \---------------------- H009
+ | |
+ /-----20 \------------------------------------ H006
+ | |
+ /-----21 \-------------------------------------------- H008
+ | |
+ /------22 \--------------------------------------------------- H014
+ | |
+ | \---------------------------------------------------------- H013
+ |
+ +------------------------------------------------------------------ H010
+ |
+------24------------------------------------------------------------------ H001
+ |
+ | /------- H003
+ +---------------------------------------------------------23
+ | \------- H005
+ |
+ \------------------------------------------------------------------ H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_24 --> node_22 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_22 --> node_21 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_21 --> node_20 10 1 1.000 2 ==> 1
+ node_20 --> node_19 9 1 1.000 2 ==> 1
+ node_17 --> node_16 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 --> 1
+ node_15 --> H012 11 1 0.333 2 ==> 1
+ node_17 --> H009 12 1 0.333 2 --> 1
+ node_19 --> H006 11 1 0.333 2 --> 1
+ node_20 --> H008 11 1 0.333 2 --> 1
+ node_24 --> H010 5 1 1.000 2 ==> 1
+ node_24 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_24 --> node_23 3 1 1.000 2 ==> 1
+ node_23 --> H003 4 1 1.000 2 ==> 1
+ node_23 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 12:
+
+Branch lengths and linkages for tree #12
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 20 root 0 0 0
+ 18 20 2 2 2
+ 17 18 3 3 3
+ 16 17 2 2 2
+H002 (1) 16 0 0 0
+ 15 16 1 1 1
+H008 (4) 15 1 1 1
+H006 (13) 15 0 0 0
+H014 (5) 16 2 2 2
+H009 (12) 16 1 1 1
+H007 (3) 17 1 1 1
+H012 (11) 17 1 1 1
+H011 (14) 17 0 0 0
+H013 (6) 18 0 0 0
+H010 (2) 20 1 1 1
+H001 (7) 20 2 2 2
+ 19 20 1 1 1
+H003 (8) 19 1 1 1
+H005 (10) 19 1 1 1
+H000 (9)* 20 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /------------------------ H002
+ |
+ | /------------ H008
+ +----------15
+ /----------16 \------------ H006
+ | |
+ | +------------------------ H014
+ | |
+ | \------------------------ H009
+ /-----------17
+ | +------------------------------------ H007
+ | |
+ | +------------------------------------ H012
+ /----------18 |
+ | | \------------------------------------ H011
+ | |
+ | \------------------------------------------------- H013
+ |
+ +------------------------------------------------------------- H010
+ |
+-----------20------------------------------------------------------------- H001
+ |
+ | /------------ H003
+ +-----------------------------------------------19
+ | \------------ H005
+ |
+ \------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_20 --> node_18 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_18 --> node_17 8 1 1.000 2 ==> 1
+ 9 1 0.333 2 ==> 1
+ 10 1 0.500 2 ==> 1
+ node_17 --> node_16 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_16 --> node_15 11 1 0.500 2 ==> 1
+ node_15 --> H008 9 1 0.333 1 ==> 2
+ node_16 --> H014 9 1 0.333 1 ==> 2
+ 10 1 0.500 1 ==> 2
+ node_16 --> H009 12 1 0.333 2 ==> 1
+ node_17 --> H007 12 1 0.333 2 ==> 1
+ node_17 --> H012 11 1 0.500 2 ==> 1
+ node_20 --> H010 5 1 1.000 2 ==> 1
+ node_20 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_20 --> node_19 3 1 1.000 2 ==> 1
+ node_19 --> H003 4 1 1.000 2 ==> 1
+ node_19 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 13:
+
+Branch lengths and linkages for tree #13
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 21 root 0 0 0
+ 19 21 2 2 2
+ 18 19 3 3 3
+ 17 18 2 2 2
+H002 (1) 17 0 0 0
+ 15 17 2 2 2
+H007 (3) 15 1 1 1
+H012 (11) 15 1 1 1
+H011 (14) 15 0 0 0
+ 16 17 1 1 1
+H008 (4) 16 1 1 1
+H006 (13) 16 0 0 0
+H009 (12) 17 1 1 1
+H014 (5) 18 0 0 0
+H001 (7) 19 0 0 0
+H010 (2) 21 1 1 1
+H013 (6) 21 2 2 2
+ 20 21 1 1 1
+H003 (8) 20 1 1 1
+H005 (10) 20 1 1 1
+H000 (9)* 21 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /------------------------ H002
+ |
+ | /------------ H007
+ | |
+ +----------15------------ H012
+ | |
+ /----------17 \------------ H011
+ | |
+ | | /------------ H008
+ | +----------16
+ /-----------18 | \------------ H006
+ | | |
+ | | \------------------------ H009
+ /----------19 |
+ | | \------------------------------------ H014
+ | |
+ | \------------------------------------------------- H001
+ |
+ +------------------------------------------------------------- H010
+ |
+-----------21------------------------------------------------------------- H013
+ |
+ | /------------ H003
+ +-----------------------------------------------20
+ | \------------ H005
+ |
+ \------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_19 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_19 --> node_18 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_18 --> node_17 9 1 0.500 2 ==> 1
+ 10 1 1.000 2 ==> 1
+ node_17 --> node_15 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ node_15 --> H012 11 1 0.500 2 ==> 1
+ node_17 --> node_16 11 1 0.500 2 ==> 1
+ node_16 --> H008 9 1 0.500 1 ==> 2
+ node_17 --> H009 12 1 0.333 2 ==> 1
+ node_21 --> H010 5 1 1.000 2 ==> 1
+ node_21 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ node_21 --> node_20 3 1 1.000 2 ==> 1
+ node_20 --> H003 4 1 1.000 2 ==> 1
+ node_20 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 14:
+
+Branch lengths and linkages for tree #14
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 22 root 0 0 0
+ 20 22 0 0 2
+ 19 20 2 2 2
+ 18 19 3 1 3
+ 17 18 2 2 2
+H002 (1) 17 0 0 0
+ 15 17 2 2 2
+H007 (3) 15 1 1 1
+H012 (11) 15 1 1 1
+H011 (14) 15 0 0 0
+ 16 17 1 1 1
+H008 (4) 16 1 1 1
+H006 (13) 16 0 0 0
+H009 (12) 17 1 1 1
+H014 (5) 18 0 0 0
+H001 (7) 19 0 0 2
+H013 (6) 20 2 0 2
+H010 (2) 22 1 1 1
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (10) 21 1 1 1
+H000 (9)* 22 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /--------------------- H002
+ |
+ | /---------- H007
+ | |
+ +---------15---------- H012
+ | |
+ /--------17 \---------- H011
+ | |
+ | | /---------- H008
+ | +---------16
+ /---------18 | \---------- H006
+ | | |
+ | | \--------------------- H009
+ /--------19 |
+ | | \------------------------------- H014
+ | |
+ /---------20 \------------------------------------------ H001
+ | |
+ | \---------------------------------------------------- H013
+ |
+ +--------------------------------------------------------------- H010
+---------22
+ | /---------- H003
+ +---------------------------------------------------21
+ | \---------- H005
+ |
+ \--------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_20 --> node_19 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_19 --> node_18 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_18 --> node_17 9 1 0.500 2 ==> 1
+ 10 1 1.000 2 ==> 1
+ node_17 --> node_15 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ node_15 --> H012 11 1 0.500 2 ==> 1
+ node_17 --> node_16 11 1 0.500 2 ==> 1
+ node_16 --> H008 9 1 0.500 1 ==> 2
+ node_17 --> H009 12 1 0.333 2 ==> 1
+ node_20 --> H013 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ node_22 --> H010 5 1 1.000 2 ==> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 15:
+
+Branch lengths and linkages for tree #15
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 22 root 0 0 0
+ 20 22 2 2 2
+ 19 20 3 3 3
+ 18 19 1 1 2
+ 16 18 1 0 1
+H002 (1) 16 0 0 0
+ 15 16 2 2 2
+H007 (3) 15 1 1 1
+H012 (11) 15 1 1 1
+H011 (14) 15 0 0 0
+H009 (12) 16 1 1 1
+ 17 18 1 1 1
+H008 (4) 17 0 0 1
+H006 (13) 17 1 0 1
+H014 (5) 19 0 0 0
+H013 (6) 20 0 0 0
+H010 (2) 22 1 1 1
+H001 (7) 22 2 2 2
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (10) 21 1 1 1
+H000 (9)* 22 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /--------------------- H002
+ |
+ | /---------- H007
+ | |
+ /--------16---------15---------- H012
+ | | |
+ | | \---------- H011
+ | |
+ /---------18 \--------------------- H009
+ | |
+ | | /---------- H008
+ /--------19 \-------------------17
+ | | \---------- H006
+ | |
+ /---------20 \------------------------------------------ H014
+ | |
+ | \---------------------------------------------------- H013
+ |
+ +--------------------------------------------------------------- H010
+ |
+---------22--------------------------------------------------------------- H001
+ |
+ | /---------- H003
+ +---------------------------------------------------21
+ | \---------- H005
+ |
+ \--------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_20 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_20 --> node_19 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_19 --> node_18 10 1 1.000 2 ==> 1
+ node_18 --> node_16 9 1 0.500 2 --> 1
+ node_16 --> node_15 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ node_15 --> H012 11 1 0.500 2 ==> 1
+ node_16 --> H009 12 1 0.333 2 ==> 1
+ node_18 --> node_17 11 1 0.500 2 ==> 1
+ node_17 --> H006 9 1 0.500 2 --> 1
+ node_22 --> H010 5 1 1.000 2 ==> 1
+ node_22 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 16:
+
+Branch lengths and linkages for tree #16
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 21 root 0 0 0
+ 19 21 2 2 2
+ 18 19 3 3 3
+ 17 18 1 1 1
+ 16 17 1 1 1
+H002 (1) 16 0 0 0
+ 15 16 2 2 2
+H007 (3) 15 1 1 1
+H012 (11) 15 1 1 1
+H011 (14) 15 0 0 0
+H009 (12) 16 1 1 1
+H006 (13) 16 1 1 1
+H008 (4) 17 1 1 1
+H014 (5) 18 0 0 0
+H013 (6) 19 0 0 0
+H010 (2) 21 1 1 1
+H001 (7) 21 2 2 2
+ 20 21 1 1 1
+H003 (8) 20 1 1 1
+H005 (10) 20 1 1 1
+H000 (9)* 21 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /--------------------- H002
+ |
+ | /---------- H007
+ | |
+ +---------15---------- H012
+ /--------16 |
+ | | \---------- H011
+ | |
+ | +--------------------- H009
+ /---------17 |
+ | | \--------------------- H006
+ | |
+ /--------18 \------------------------------- H008
+ | |
+ /---------19 \------------------------------------------ H014
+ | |
+ | \---------------------------------------------------- H013
+ |
+ +--------------------------------------------------------------- H010
+ |
+---------21--------------------------------------------------------------- H001
+ |
+ | /---------- H003
+ +---------------------------------------------------20
+ | \---------- H005
+ |
+ \--------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_19 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_19 --> node_18 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_18 --> node_17 10 1 1.000 2 ==> 1
+ node_17 --> node_16 9 1 1.000 2 ==> 1
+ node_16 --> node_15 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ node_15 --> H012 11 1 0.333 2 ==> 1
+ node_16 --> H009 12 1 0.333 2 ==> 1
+ node_16 --> H006 11 1 0.333 2 ==> 1
+ node_17 --> H008 11 1 0.333 2 ==> 1
+ node_21 --> H010 5 1 1.000 2 ==> 1
+ node_21 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_21 --> node_20 3 1 1.000 2 ==> 1
+ node_20 --> H003 4 1 1.000 2 ==> 1
+ node_20 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 17:
+
+Branch lengths and linkages for tree #17
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 21 23 0 0 2
+ 20 21 2 2 2
+ 19 20 1 1 3
+ 18 19 2 2 2
+ 16 18 2 0 2
+H002 (1) 16 0 0 0
+ 15 16 1 1 1
+H008 (4) 15 1 1 1
+H006 (13) 15 0 0 0
+H009 (12) 16 1 1 1
+ 17 18 0 0 2
+H007 (3) 17 1 1 1
+H012 (11) 17 1 1 1
+H011 (14) 17 0 0 0
+H014 (5) 19 2 0 2
+H013 (6) 20 0 0 2
+H001 (7) 21 2 0 2
+H010 (2) 23 1 1 1
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (10) 22 1 1 1
+H000 (9)* 23 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /------------------ H002
+ |
+ | /--------- H008
+ /-------16-------15
+ | | \--------- H006
+ | |
+ | \------------------ H009
+ /--------18
+ | | /--------- H007
+ | | |
+ | \----------------17--------- H012
+ /-------19 |
+ | | \--------- H011
+ | |
+ /-------20 \------------------------------------- H014
+ | |
+ /-------21 \---------------------------------------------- H013
+ | |
+ | \------------------------------------------------------- H001
+ |
+ +---------------------------------------------------------------- H010
+--------23
+ | /--------- H003
+ +-----------------------------------------------------22
+ | \--------- H005
+ |
+ \---------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_20 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_20 --> node_19 8 1 1.000 2 ==> 1
+ node_19 --> node_18 9 1 0.500 2 ==> 1
+ 10 1 1.000 2 ==> 1
+ node_18 --> node_16 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ node_16 --> node_15 11 1 0.500 2 ==> 1
+ node_15 --> H008 9 1 0.500 1 ==> 2
+ node_16 --> H009 12 1 0.333 2 ==> 1
+ node_17 --> H007 12 1 0.333 2 ==> 1
+ node_17 --> H012 11 1 0.500 2 ==> 1
+ node_19 --> H014 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ node_21 --> H001 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 18:
+
+Branch lengths and linkages for tree #18
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 21 23 0 0 2
+ 20 21 2 2 2
+ 19 20 3 1 3
+ 18 19 1 1 2
+ 16 18 1 0 1
+H002 (1) 16 0 0 0
+ 15 16 2 2 2
+H007 (3) 15 1 1 1
+H012 (11) 15 1 1 1
+H011 (14) 15 0 0 0
+H009 (12) 16 1 1 1
+ 17 18 1 1 1
+H008 (4) 17 0 0 1
+H006 (13) 17 1 0 1
+H014 (5) 19 0 0 0
+H013 (6) 20 0 0 2
+H001 (7) 21 2 0 2
+H010 (2) 23 1 1 1
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (10) 22 1 1 1
+H000 (9)* 23 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /------------------ H002
+ |
+ | /--------- H007
+ | |
+ /-------16-------15--------- H012
+ | | |
+ | | \--------- H011
+ | |
+ /--------18 \------------------ H009
+ | |
+ | | /--------- H008
+ /-------19 \----------------17
+ | | \--------- H006
+ | |
+ /-------20 \------------------------------------- H014
+ | |
+ /-------21 \---------------------------------------------- H013
+ | |
+ | \------------------------------------------------------- H001
+ |
+ +---------------------------------------------------------------- H010
+--------23
+ | /--------- H003
+ +-----------------------------------------------------22
+ | \--------- H005
+ |
+ \---------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_20 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_20 --> node_19 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_19 --> node_18 10 1 1.000 2 ==> 1
+ node_18 --> node_16 9 1 0.500 2 --> 1
+ node_16 --> node_15 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ node_15 --> H012 11 1 0.500 2 ==> 1
+ node_16 --> H009 12 1 0.333 2 ==> 1
+ node_18 --> node_17 11 1 0.500 2 ==> 1
+ node_17 --> H006 9 1 0.500 2 --> 1
+ node_21 --> H001 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 19:
+
+Branch lengths and linkages for tree #19
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 21 23 0 0 2
+ 20 21 2 2 2
+ 19 20 3 1 3
+ 18 19 1 1 2
+ 17 18 1 1 1
+ 16 17 0 0 1
+H002 (1) 16 0 0 0
+ 15 16 2 2 2
+H007 (3) 15 1 1 1
+H012 (11) 15 1 1 1
+H011 (14) 15 0 0 0
+H009 (12) 16 1 1 1
+H006 (13) 17 1 0 1
+H008 (4) 18 1 0 1
+H014 (5) 19 0 0 0
+H013 (6) 20 0 0 2
+H001 (7) 21 2 0 2
+H010 (2) 23 1 1 1
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (10) 22 1 1 1
+H000 (9)* 23 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /---------------- H002
+ |
+ | /-------- H007
+ | |
+ /------16------15-------- H012
+ | | |
+ | | \-------- H011
+ /------17 |
+ | | \---------------- H009
+ | |
+ /-------18 \------------------------ H006
+ | |
+ /------19 \-------------------------------- H008
+ | |
+ /------20 \----------------------------------------- H014
+ | |
+ /------21 \------------------------------------------------- H013
+ | |
+ | \--------------------------------------------------------- H001
+ |
+ +----------------------------------------------------------------- H010
+-------23
+ | /-------- H003
+ +-------------------------------------------------------22
+ | \-------- H005
+ |
+ \----------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_20 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_20 --> node_19 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_19 --> node_18 10 1 1.000 2 ==> 1
+ node_18 --> node_17 9 1 1.000 2 ==> 1
+ node_16 --> node_15 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ node_15 --> H012 11 1 0.333 2 ==> 1
+ node_16 --> H009 12 1 0.333 2 ==> 1
+ node_17 --> H006 11 1 0.333 2 --> 1
+ node_18 --> H008 11 1 0.333 2 --> 1
+ node_21 --> H001 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 20:
+
+Branch lengths and linkages for tree #20
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 24 root 0 0 0
+ 22 24 0 0 2
+ 21 22 2 2 2
+ 20 21 3 1 3
+ 19 20 2 2 2
+H002 (1) 19 0 0 0
+ 18 19 0 0 1
+ 16 18 2 2 2
+ 15 16 0 0 1
+H007 (3) 15 1 1 1
+H011 (14) 15 0 0 0
+H012 (11) 16 1 0 1
+ 17 18 1 0 1
+H008 (4) 17 1 1 1
+H006 (13) 17 0 0 0
+H009 (12) 19 1 1 1
+H014 (5) 20 0 0 0
+H013 (6) 21 0 0 2
+H001 (7) 22 2 0 2
+H010 (2) 24 1 1 1
+ 23 24 1 1 1
+H003 (8) 23 1 1 1
+H005 (10) 23 1 1 1
+H000 (9)* 24 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /-------------------------------- H002
+ |
+ | /-------- H007
+ | /------15
+ | | \-------- H011
+ | /------16
+ /-------19 | \---------------- H012
+ | +------18
+ | | | /-------- H008
+ | | \--------------17
+ /------20 | \-------- H006
+ | | |
+ | | \-------------------------------- H009
+ /------21 |
+ | | \----------------------------------------- H014
+ | |
+ /------22 \------------------------------------------------- H013
+ | |
+ | \--------------------------------------------------------- H001
+ |
+ +----------------------------------------------------------------- H010
+-------24
+ | /-------- H003
+ +-------------------------------------------------------23
+ | \-------- H005
+ |
+ \----------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_21 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_21 --> node_20 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_20 --> node_19 9 1 0.500 2 ==> 1
+ 10 1 1.000 2 ==> 1
+ node_18 --> node_16 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ node_16 --> H012 11 1 0.500 2 --> 1
+ node_18 --> node_17 11 1 0.500 2 --> 1
+ node_17 --> H008 9 1 0.500 1 ==> 2
+ node_19 --> H009 12 1 0.333 2 ==> 1
+ node_22 --> H001 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ node_24 --> H010 5 1 1.000 2 ==> 1
+ node_24 --> node_23 3 1 1.000 2 ==> 1
+ node_23 --> H003 4 1 1.000 2 ==> 1
+ node_23 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 21:
+
+Branch lengths and linkages for tree #21
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 21 23 0 0 2
+ 20 21 2 2 2
+ 19 20 3 1 3
+ 18 19 2 2 2
+H002 (1) 18 0 0 0
+ 17 18 1 1 1
+ 16 17 2 2 2
+ 15 16 1 1 1
+H007 (3) 15 1 1 1
+H011 (14) 15 0 0 0
+H012 (11) 16 0 0 0
+H008 (4) 17 1 1 1
+H006 (13) 17 0 0 0
+H009 (12) 18 1 1 1
+H014 (5) 19 0 0 0
+H013 (6) 20 0 0 2
+H001 (7) 21 2 0 2
+H010 (2) 23 1 1 1
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (10) 22 1 1 1
+H000 (9)* 23 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /-------------------------------- H002
+ |
+ | /-------- H007
+ | /------15
+ | | \-------- H011
+ | /------16
+ /-------18 | \---------------- H012
+ | | |
+ | +------17------------------------ H008
+ | | |
+ /------19 | \------------------------ H006
+ | | |
+ | | \-------------------------------- H009
+ /------20 |
+ | | \----------------------------------------- H014
+ | |
+ /------21 \------------------------------------------------- H013
+ | |
+ | \--------------------------------------------------------- H001
+ |
+ +----------------------------------------------------------------- H010
+-------23
+ | /-------- H003
+ +-------------------------------------------------------22
+ | \-------- H005
+ |
+ \----------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_20 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_20 --> node_19 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_19 --> node_18 9 1 0.500 2 ==> 1
+ 10 1 1.000 2 ==> 1
+ node_18 --> node_17 11 1 0.500 2 ==> 1
+ node_17 --> node_16 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_16 --> node_15 11 1 0.500 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ node_17 --> H008 9 1 0.500 1 ==> 2
+ node_18 --> H009 12 1 0.333 2 ==> 1
+ node_21 --> H001 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 22:
+
+Branch lengths and linkages for tree #22
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 24 root 0 0 0
+ 22 24 0 0 2
+ 21 22 2 2 2
+ 20 21 3 1 3
+ 19 20 2 2 2
+H002 (1) 19 0 0 0
+ 17 19 0 0 1
+ 16 17 2 2 2
+H007 (3) 16 1 0 1
+ 15 16 0 0 1
+H012 (11) 15 1 1 1
+H011 (14) 15 0 0 0
+H009 (12) 17 1 0 1
+ 18 19 1 1 1
+H008 (4) 18 1 1 1
+H006 (13) 18 0 0 0
+H014 (5) 20 0 0 0
+H013 (6) 21 0 0 2
+H001 (7) 22 2 0 2
+H010 (2) 24 1 1 1
+ 23 24 1 1 1
+H003 (8) 23 1 1 1
+H005 (10) 23 1 1 1
+H000 (9)* 24 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /-------------------------------- H002
+ |
+ | /---------------- H007
+ | |
+ | /------16 /-------- H012
+ | | \------15
+ /-------19------17 \-------- H011
+ | | |
+ | | \------------------------ H009
+ | |
+ /------20 | /-------- H008
+ | | \----------------------18
+ | | \-------- H006
+ /------21 |
+ | | \----------------------------------------- H014
+ | |
+ /------22 \------------------------------------------------- H013
+ | |
+ | \--------------------------------------------------------- H001
+ |
+ +----------------------------------------------------------------- H010
+-------24
+ | /-------- H003
+ +-------------------------------------------------------23
+ | \-------- H005
+ |
+ \----------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_21 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_21 --> node_20 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_20 --> node_19 9 1 0.500 2 ==> 1
+ 10 1 1.000 2 ==> 1
+ node_17 --> node_16 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 --> 1
+ node_15 --> H012 11 1 0.500 2 ==> 1
+ node_17 --> H009 12 1 0.333 2 --> 1
+ node_19 --> node_18 11 1 0.500 2 ==> 1
+ node_18 --> H008 9 1 0.500 1 ==> 2
+ node_22 --> H001 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ node_24 --> H010 5 1 1.000 2 ==> 1
+ node_24 --> node_23 3 1 1.000 2 ==> 1
+ node_23 --> H003 4 1 1.000 2 ==> 1
+ node_23 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 23:
+
+Branch lengths and linkages for tree #23
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 21 23 2 2 2
+ 20 21 1 1 1
+ 19 20 2 2 2
+ 18 19 0 0 1
+ 17 18 2 2 2
+ 15 17 0 0 1
+H002 (1) 15 0 0 0
+H009 (12) 15 1 1 1
+ 16 17 1 0 1
+H008 (4) 16 1 1 1
+H006 (13) 16 0 0 0
+H012 (11) 18 1 0 1
+H007 (3) 19 1 1 1
+H011 (14) 19 0 0 0
+H014 (5) 20 2 2 2
+H013 (6) 21 0 0 0
+H010 (2) 23 1 1 1
+H001 (7) 23 2 2 2
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (10) 22 1 1 1
+H000 (9)* 23 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /--------- H002
+ /-------15
+ | \--------- H009
+ /-------17
+ | | /--------- H008
+ | \-------16
+ /--------18 \--------- H006
+ | |
+ | \--------------------------- H012
+ /-------19
+ | +------------------------------------- H007
+ | |
+ /-------20 \------------------------------------- H011
+ | |
+ /-------21 \---------------------------------------------- H014
+ | |
+ | \------------------------------------------------------- H013
+ |
+ +---------------------------------------------------------------- H010
+ |
+--------23---------------------------------------------------------------- H001
+ |
+ | /--------- H003
+ +-----------------------------------------------------22
+ | \--------- H005
+ |
+ \---------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_21 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_21 --> node_20 8 1 1.000 2 ==> 1
+ node_20 --> node_19 9 1 0.500 2 ==> 1
+ 10 1 1.000 2 ==> 1
+ node_18 --> node_17 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_17 --> node_16 11 1 0.500 2 --> 1
+ node_16 --> H008 9 1 0.500 1 ==> 2
+ node_18 --> H012 11 1 0.500 2 --> 1
+ node_19 --> H007 12 1 0.333 2 ==> 1
+ node_20 --> H014 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+ node_23 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 24:
+
+Branch lengths and linkages for tree #24
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 21 23 2 2 2
+ 20 21 1 1 3
+ 18 20 2 2 2
+ 17 18 1 0 2
+ 15 17 1 0 1
+H002 (1) 15 0 0 0
+H009 (12) 15 1 1 1
+ 16 17 1 1 1
+H008 (4) 16 0 0 1
+H006 (13) 16 1 0 1
+H014 (5) 18 0 0 2
+ 19 20 2 0 2
+H007 (3) 19 1 1 1
+H012 (11) 19 1 1 1
+H011 (14) 19 0 0 0
+H013 (6) 21 0 0 0
+H010 (2) 23 1 1 1
+H001 (7) 23 2 2 2
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (10) 22 1 1 1
+H000 (9)* 23 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /---------- H002
+ /---------15
+ | \---------- H009
+ /--------17
+ | | /---------- H008
+ | \---------16
+ /---------18 \---------- H006
+ | |
+ | \------------------------------- H014
+ /--------20
+ | | /---------- H007
+ | | |
+ | \------------------------------19---------- H012
+ /---------21 |
+ | | \---------- H011
+ | |
+ | \---------------------------------------------------- H013
+ |
+ +--------------------------------------------------------------- H010
+ |
+---------23--------------------------------------------------------------- H001
+ |
+ | /---------- H003
+ +---------------------------------------------------22
+ | \---------- H005
+ |
+ \--------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_21 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_21 --> node_20 8 1 1.000 2 ==> 1
+ node_20 --> node_18 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_18 --> node_17 10 1 0.500 2 --> 1
+ node_17 --> node_15 9 1 0.333 2 --> 1
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_17 --> node_16 11 1 0.500 2 ==> 1
+ node_16 --> H006 9 1 0.333 2 --> 1
+ node_20 --> node_19 9 1 0.333 2 --> 1
+ 10 1 0.500 2 --> 1
+ node_19 --> H007 12 1 0.333 2 ==> 1
+ node_19 --> H012 11 1 0.500 2 ==> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+ node_23 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 25:
+
+Branch lengths and linkages for tree #25
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 22 root 0 0 0
+ 20 22 2 2 2
+ 19 20 1 1 1
+ 18 19 2 2 2
+ 17 18 1 1 1
+ 16 17 2 2 2
+ 15 16 1 1 1
+H002 (1) 15 0 0 0
+H009 (12) 15 1 1 1
+H008 (4) 16 1 1 1
+H006 (13) 16 0 0 0
+H012 (11) 17 0 0 0
+H007 (3) 18 1 1 1
+H011 (14) 18 0 0 0
+H014 (5) 19 2 2 2
+H013 (6) 20 0 0 0
+H010 (2) 22 1 1 1
+H001 (7) 22 2 2 2
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (10) 21 1 1 1
+H000 (9)* 22 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /--------- H002
+ /-------15
+ | \--------- H009
+ |
+ /-------16------------------ H008
+ | |
+ /--------17 \------------------ H006
+ | |
+ | \--------------------------- H012
+ /-------18
+ | +------------------------------------- H007
+ | |
+ /-------19 \------------------------------------- H011
+ | |
+ /-------20 \---------------------------------------------- H014
+ | |
+ | \------------------------------------------------------- H013
+ |
+ +---------------------------------------------------------------- H010
+ |
+--------22---------------------------------------------------------------- H001
+ |
+ | /--------- H003
+ +-----------------------------------------------------21
+ | \--------- H005
+ |
+ \---------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_20 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_20 --> node_19 8 1 1.000 2 ==> 1
+ node_19 --> node_18 9 1 0.500 2 ==> 1
+ 10 1 1.000 2 ==> 1
+ node_18 --> node_17 11 1 0.500 2 ==> 1
+ node_17 --> node_16 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_16 --> node_15 11 1 0.500 1 ==> 2
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_16 --> H008 9 1 0.500 1 ==> 2
+ node_18 --> H007 12 1 0.333 2 ==> 1
+ node_19 --> H014 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_22 --> H010 5 1 1.000 2 ==> 1
+ node_22 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 26:
+
+Branch lengths and linkages for tree #26
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 21 23 2 2 2
+ 20 21 1 1 2
+ 18 20 2 2 2
+ 17 18 1 0 2
+ 16 17 1 1 1
+ 15 16 0 0 1
+H002 (1) 15 0 0 0
+H009 (12) 15 1 1 1
+H006 (13) 16 1 0 1
+H008 (4) 17 1 0 1
+H014 (5) 18 0 0 1
+ 19 20 2 1 2
+H007 (3) 19 1 1 1
+H012 (11) 19 1 1 1
+H011 (14) 19 0 0 0
+H013 (6) 21 0 0 0
+H010 (2) 23 1 1 1
+H001 (7) 23 2 2 2
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (10) 22 1 1 1
+H000 (9)* 23 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /--------- H002
+ /-------15
+ | \--------- H009
+ /-------16
+ | \------------------ H006
+ /--------17
+ | \--------------------------- H008
+ /-------18
+ | \------------------------------------- H014
+ |
+ /-------20 /--------- H007
+ | | |
+ | \-----------------------------------19--------- H012
+ /-------21 |
+ | | \--------- H011
+ | |
+ | \------------------------------------------------------- H013
+ |
+ +---------------------------------------------------------------- H010
+ |
+--------23---------------------------------------------------------------- H001
+ |
+ | /--------- H003
+ +-----------------------------------------------------22
+ | \--------- H005
+ |
+ \---------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_21 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_21 --> node_20 8 1 1.000 2 ==> 1
+ node_20 --> node_18 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_18 --> node_17 10 1 0.500 2 --> 1
+ node_17 --> node_16 9 1 0.500 2 ==> 1
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_16 --> H006 11 1 0.333 2 --> 1
+ node_17 --> H008 11 1 0.333 2 --> 1
+ node_20 --> node_19 9 1 0.500 2 ==> 1
+ 10 1 0.500 2 --> 1
+ node_19 --> H007 12 1 0.333 2 ==> 1
+ node_19 --> H012 11 1 0.333 2 ==> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+ node_23 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 27:
+
+Branch lengths and linkages for tree #27
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 21 root 0 0 0
+ 19 21 2 2 2
+ 18 19 3 3 3
+ 17 18 2 2 2
+H002 (1) 17 0 0 0
+ 16 17 0 0 1
+ 15 16 1 1 1
+H008 (4) 15 1 0 1
+H006 (13) 15 0 0 1
+H014 (5) 16 2 1 2
+H009 (12) 17 1 1 1
+H007 (3) 18 1 1 1
+H012 (11) 18 1 1 1
+H011 (14) 18 0 0 0
+H013 (6) 19 0 0 0
+H010 (2) 21 1 1 1
+H001 (7) 21 2 2 2
+ 20 21 1 1 1
+H003 (8) 20 1 1 1
+H005 (10) 20 1 1 1
+H000 (9)* 21 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /------------------------------- H002
+ |
+ | /---------- H008
+ | /---------15
+ /---------17 | \---------- H006
+ | +--------16
+ | | \--------------------- H014
+ | |
+ | \------------------------------- H009
+ /--------18
+ | +------------------------------------------ H007
+ | |
+ | +------------------------------------------ H012
+ /---------19 |
+ | | \------------------------------------------ H011
+ | |
+ | \---------------------------------------------------- H013
+ |
+ +--------------------------------------------------------------- H010
+ |
+---------21--------------------------------------------------------------- H001
+ |
+ | /---------- H003
+ +---------------------------------------------------20
+ | \---------- H005
+ |
+ \--------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_19 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_19 --> node_18 8 1 1.000 2 ==> 1
+ 9 1 0.333 2 ==> 1
+ 10 1 0.500 2 ==> 1
+ node_18 --> node_17 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_16 --> node_15 11 1 0.500 2 ==> 1
+ node_15 --> H008 9 1 0.333 1 --> 2
+ node_16 --> H014 9 1 0.333 1 --> 2
+ 10 1 0.500 1 ==> 2
+ node_17 --> H009 12 1 0.333 2 ==> 1
+ node_18 --> H007 12 1 0.333 2 ==> 1
+ node_18 --> H012 11 1 0.500 2 ==> 1
+ node_21 --> H010 5 1 1.000 2 ==> 1
+ node_21 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_21 --> node_20 3 1 1.000 2 ==> 1
+ node_20 --> H003 4 1 1.000 2 ==> 1
+ node_20 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 28:
+
+Branch lengths and linkages for tree #28
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 21 root 0 0 0
+ 19 21 2 2 2
+ 18 19 3 3 3
+ 17 18 2 2 2
+H002 (1) 17 0 0 0
+ 16 17 0 0 1
+ 15 16 1 1 1
+H008 (4) 15 1 0 1
+H014 (5) 15 1 1 2
+H006 (13) 16 1 0 1
+H009 (12) 17 1 1 1
+H007 (3) 18 1 1 1
+H012 (11) 18 1 1 1
+H011 (14) 18 0 0 0
+H013 (6) 19 0 0 0
+H010 (2) 21 1 1 1
+H001 (7) 21 2 2 2
+ 20 21 1 1 1
+H003 (8) 20 1 1 1
+H005 (10) 20 1 1 1
+H000 (9)* 21 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /------------------------------- H002
+ |
+ | /---------- H008
+ | /---------15
+ /---------17 | \---------- H014
+ | +--------16
+ | | \--------------------- H006
+ | |
+ | \------------------------------- H009
+ /--------18
+ | +------------------------------------------ H007
+ | |
+ | +------------------------------------------ H012
+ /---------19 |
+ | | \------------------------------------------ H011
+ | |
+ | \---------------------------------------------------- H013
+ |
+ +--------------------------------------------------------------- H010
+ |
+---------21--------------------------------------------------------------- H001
+ |
+ | /---------- H003
+ +---------------------------------------------------20
+ | \---------- H005
+ |
+ \--------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_19 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_19 --> node_18 8 1 1.000 2 ==> 1
+ 9 1 0.500 2 ==> 1
+ 10 1 0.500 2 ==> 1
+ node_18 --> node_17 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_16 --> node_15 9 1 0.500 1 ==> 2
+ node_15 --> H008 11 1 0.333 2 --> 1
+ node_15 --> H014 10 1 0.500 1 ==> 2
+ node_16 --> H006 11 1 0.333 2 --> 1
+ node_17 --> H009 12 1 0.333 2 ==> 1
+ node_18 --> H007 12 1 0.333 2 ==> 1
+ node_18 --> H012 11 1 0.333 2 ==> 1
+ node_21 --> H010 5 1 1.000 2 ==> 1
+ node_21 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_21 --> node_20 3 1 1.000 2 ==> 1
+ node_20 --> H003 4 1 1.000 2 ==> 1
+ node_20 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 29:
+
+Branch lengths and linkages for tree #29
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 22 root 0 0 0
+ 20 22 0 0 2
+ 19 20 2 2 2
+ 18 19 3 1 3
+ 17 18 1 1 1
+ 16 17 1 1 1
+H002 (1) 16 0 0 0
+ 15 16 2 2 2
+H007 (3) 15 1 1 1
+H012 (11) 15 1 1 1
+H011 (14) 15 0 0 0
+H009 (12) 16 1 1 1
+H006 (13) 16 1 1 1
+H008 (4) 17 1 1 1
+H014 (5) 18 0 0 0
+H013 (6) 19 0 0 2
+H001 (7) 20 2 0 2
+H010 (2) 22 1 1 1
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (10) 21 1 1 1
+H000 (9)* 22 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /------------------ H002
+ |
+ | /--------- H007
+ | |
+ +-------15--------- H012
+ /-------16 |
+ | | \--------- H011
+ | |
+ | +------------------ H009
+ /--------17 |
+ | | \------------------ H006
+ | |
+ /-------18 \--------------------------- H008
+ | |
+ /-------19 \------------------------------------- H014
+ | |
+ /-------20 \---------------------------------------------- H013
+ | |
+ | \------------------------------------------------------- H001
+ |
+ +---------------------------------------------------------------- H010
+--------22
+ | /--------- H003
+ +-----------------------------------------------------21
+ | \--------- H005
+ |
+ \---------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_20 --> node_19 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_19 --> node_18 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_18 --> node_17 10 1 1.000 2 ==> 1
+ node_17 --> node_16 9 1 1.000 2 ==> 1
+ node_16 --> node_15 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ node_15 --> H012 11 1 0.333 2 ==> 1
+ node_16 --> H009 12 1 0.333 2 ==> 1
+ node_16 --> H006 11 1 0.333 2 ==> 1
+ node_17 --> H008 11 1 0.333 2 ==> 1
+ node_20 --> H001 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ node_22 --> H010 5 1 1.000 2 ==> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 30:
+
+Branch lengths and linkages for tree #30
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 22 root 0 0 0
+ 20 22 2 2 2
+ 19 20 2 2 3
+ 17 19 2 2 2
+ 15 17 1 0 1
+H002 (1) 15 0 0 0
+H009 (12) 15 1 1 1
+ 16 17 1 1 1
+H008 (4) 16 0 0 1
+H006 (13) 16 1 0 1
+H014 (5) 17 1 1 2
+ 18 19 1 0 1
+H007 (3) 18 1 1 1
+H012 (11) 18 1 1 1
+H011 (14) 18 0 0 0
+H013 (6) 20 0 0 0
+H010 (2) 22 1 1 1
+H001 (7) 22 2 2 2
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (10) 21 1 1 1
+H000 (9)* 22 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /------------ H002
+ /----------15
+ | \------------ H009
+ |
+ | /------------ H008
+ /----------17----------16
+ | | \------------ H006
+ | |
+ | \------------------------ H014
+ /-----------19
+ | | /------------ H007
+ | | |
+ | \----------------------18------------ H012
+ /----------20 |
+ | | \------------ H011
+ | |
+ | \------------------------------------------------- H013
+ |
+ +------------------------------------------------------------- H010
+ |
+-----------22------------------------------------------------------------- H001
+ |
+ | /------------ H003
+ +-----------------------------------------------21
+ | \------------ H005
+ |
+ \------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_20 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_20 --> node_19 8 1 1.000 2 ==> 1
+ 10 1 0.500 2 ==> 1
+ node_19 --> node_17 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_17 --> node_15 9 1 0.333 2 --> 1
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_17 --> node_16 11 1 0.500 2 ==> 1
+ node_16 --> H006 9 1 0.333 2 --> 1
+ node_17 --> H014 10 1 0.500 1 ==> 2
+ node_19 --> node_18 9 1 0.333 2 --> 1
+ node_18 --> H007 12 1 0.333 2 ==> 1
+ node_18 --> H012 11 1 0.500 2 ==> 1
+ node_22 --> H010 5 1 1.000 2 ==> 1
+ node_22 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 31:
+
+Branch lengths and linkages for tree #31
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 25 root 0 0 0
+ 23 25 0 0 2
+ 22 23 2 2 2
+ 21 22 3 1 3
+ 20 21 1 1 2
+ 18 20 1 0 1
+H002 (1) 18 0 0 0
+ 17 18 0 0 1
+ 16 17 2 2 2
+H007 (3) 16 1 0 1
+ 15 16 0 0 1
+H012 (11) 15 1 1 1
+H011 (14) 15 0 0 0
+H009 (12) 17 1 0 1
+ 19 20 1 1 1
+H008 (4) 19 0 0 1
+H006 (13) 19 1 0 1
+H014 (5) 21 0 0 0
+H013 (6) 22 0 0 2
+H001 (7) 23 2 0 2
+H010 (2) 25 1 1 1
+ 24 25 1 1 1
+H003 (8) 24 1 1 1
+H005 (10) 24 1 1 1
+H000 (9)* 25 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /----------------------------- H002
+ |
+ | /--------------- H007
+ /-----18 |
+ | | /-----16 /------- H012
+ | | | \------15
+ | \-----17 \------- H011
+ /------20 |
+ | | \---------------------- H009
+ | |
+ | | /------- H008
+ /-----21 \---------------------------19
+ | | \------- H006
+ | |
+ /-----22 \-------------------------------------------- H014
+ | |
+ /------23 \--------------------------------------------------- H013
+ | |
+ | \---------------------------------------------------------- H001
+ |
+ +------------------------------------------------------------------ H010
+------25
+ | /------- H003
+ +---------------------------------------------------------24
+ | \------- H005
+ |
+ \------------------------------------------------------------------ H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_22 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_22 --> node_21 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_21 --> node_20 10 1 1.000 2 ==> 1
+ node_20 --> node_18 9 1 0.500 2 --> 1
+ node_17 --> node_16 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 --> 1
+ node_15 --> H012 11 1 0.500 2 ==> 1
+ node_17 --> H009 12 1 0.333 2 --> 1
+ node_20 --> node_19 11 1 0.500 2 ==> 1
+ node_19 --> H006 9 1 0.500 2 --> 1
+ node_23 --> H001 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ node_25 --> H010 5 1 1.000 2 ==> 1
+ node_25 --> node_24 3 1 1.000 2 ==> 1
+ node_24 --> H003 4 1 1.000 2 ==> 1
+ node_24 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 32:
+
+Branch lengths and linkages for tree #32
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 25 root 0 0 0
+ 23 25 0 0 2
+ 22 23 2 2 2
+ 21 22 3 1 3
+ 20 21 1 1 2
+ 15 20 1 0 1
+H002 (1) 15 0 0 0
+H009 (12) 15 1 1 1
+ 19 20 1 1 1
+ 18 19 1 0 1
+ 17 18 2 2 2
+ 16 17 1 1 1
+H007 (3) 16 1 1 1
+H011 (14) 16 0 0 0
+H012 (11) 17 0 0 0
+H006 (13) 18 0 0 0
+H008 (4) 19 0 0 1
+H014 (5) 21 0 0 0
+H013 (6) 22 0 0 2
+H001 (7) 23 2 0 2
+H010 (2) 25 1 1 1
+ 24 25 1 1 1
+H003 (8) 24 1 1 1
+H005 (10) 24 1 1 1
+H000 (9)* 25 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /------- H002
+ /---------------------------15
+ | \------- H009
+ |
+ | /------- H007
+ | /------16
+ /------20 | \------- H011
+ | | /-----17
+ | | | \--------------- H012
+ | | /-----18
+ /-----21 | | \---------------------- H006
+ | | \-----19
+ | | \----------------------------- H008
+ /-----22 |
+ | | \-------------------------------------------- H014
+ | |
+ /------23 \--------------------------------------------------- H013
+ | |
+ | \---------------------------------------------------------- H001
+ |
+ +------------------------------------------------------------------ H010
+------25
+ | /------- H003
+ +---------------------------------------------------------24
+ | \------- H005
+ |
+ \------------------------------------------------------------------ H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_22 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_22 --> node_21 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_21 --> node_20 10 1 1.000 2 ==> 1
+ node_20 --> node_15 9 1 0.500 2 --> 1
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_20 --> node_19 11 1 0.500 2 ==> 1
+ node_19 --> node_18 9 1 0.500 2 --> 1
+ node_18 --> node_17 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_17 --> node_16 11 1 0.500 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 ==> 1
+ node_23 --> H001 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ node_25 --> H010 5 1 1.000 2 ==> 1
+ node_25 --> node_24 3 1 1.000 2 ==> 1
+ node_24 --> H003 4 1 1.000 2 ==> 1
+ node_24 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 33:
+
+Branch lengths and linkages for tree #33
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 21 23 2 2 2
+ 20 21 3 3 3
+ 19 20 1 1 1
+ 18 19 1 1 1
+H002 (1) 18 0 0 0
+ 17 18 0 0 1
+ 16 17 2 2 2
+H007 (3) 16 1 0 1
+ 15 16 0 0 1
+H012 (11) 15 1 1 1
+H011 (14) 15 0 0 0
+H009 (12) 17 1 0 1
+H006 (13) 18 1 1 1
+H008 (4) 19 1 1 1
+H014 (5) 20 0 0 0
+H013 (6) 21 0 0 0
+H010 (2) 23 1 1 1
+H001 (7) 23 2 2 2
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (10) 22 1 1 1
+H000 (9)* 23 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /-------------------------------- H002
+ |
+ | /---------------- H007
+ | |
+ | /------16 /-------- H012
+ /-------18 | \------15
+ | +------17 \-------- H011
+ | | |
+ | | \------------------------ H009
+ /------19 |
+ | | \-------------------------------- H006
+ | |
+ /------20 \----------------------------------------- H008
+ | |
+ /------21 \------------------------------------------------- H014
+ | |
+ | \--------------------------------------------------------- H013
+ |
+ +----------------------------------------------------------------- H010
+ |
+-------23----------------------------------------------------------------- H001
+ |
+ | /-------- H003
+ +-------------------------------------------------------22
+ | \-------- H005
+ |
+ \----------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_21 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_21 --> node_20 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_20 --> node_19 10 1 1.000 2 ==> 1
+ node_19 --> node_18 9 1 1.000 2 ==> 1
+ node_17 --> node_16 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 --> 1
+ node_15 --> H012 11 1 0.333 2 ==> 1
+ node_17 --> H009 12 1 0.333 2 --> 1
+ node_18 --> H006 11 1 0.333 2 ==> 1
+ node_19 --> H008 11 1 0.333 2 ==> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+ node_23 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 34:
+
+Branch lengths and linkages for tree #34
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 21 23 2 2 2
+ 20 21 3 3 3
+ 19 20 2 2 2
+H002 (1) 19 0 0 0
+ 17 19 0 0 1
+ 16 17 2 2 2
+H007 (3) 16 1 0 1
+ 15 16 0 0 1
+H012 (11) 15 1 1 1
+H011 (14) 15 0 0 0
+H009 (12) 17 1 0 1
+ 18 19 1 1 1
+H008 (4) 18 1 1 1
+H006 (13) 18 0 0 0
+H014 (5) 20 0 0 0
+H001 (7) 21 0 0 0
+H010 (2) 23 1 1 1
+H013 (6) 23 2 2 2
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (10) 22 1 1 1
+H000 (9)* 23 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /------------------------------------- H002
+ |
+ | /------------------ H007
+ | |
+ | /-------16 /--------- H012
+ | | \-------15
+ /-------19--------17 \--------- H011
+ | | |
+ | | \--------------------------- H009
+ | |
+ /-------20 | /--------- H008
+ | | \--------------------------18
+ | | \--------- H006
+ /-------21 |
+ | | \---------------------------------------------- H014
+ | |
+ | \------------------------------------------------------- H001
+ |
+ +---------------------------------------------------------------- H010
+ |
+--------23---------------------------------------------------------------- H013
+ |
+ | /--------- H003
+ +-----------------------------------------------------22
+ | \--------- H005
+ |
+ \---------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_21 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_21 --> node_20 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_20 --> node_19 9 1 0.500 2 ==> 1
+ 10 1 1.000 2 ==> 1
+ node_17 --> node_16 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 --> 1
+ node_15 --> H012 11 1 0.500 2 ==> 1
+ node_17 --> H009 12 1 0.333 2 --> 1
+ node_19 --> node_18 11 1 0.500 2 ==> 1
+ node_18 --> H008 9 1 0.500 1 ==> 2
+ node_23 --> H010 5 1 1.000 2 ==> 1
+ node_23 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 35:
+
+Branch lengths and linkages for tree #35
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 22 root 0 0 0
+ 20 22 2 2 2
+ 19 20 3 3 3
+ 18 19 0 0 1
+ 17 18 2 2 2
+ 16 17 0 0 1
+H002 (1) 16 0 0 0
+ 15 16 1 1 1
+H008 (4) 15 1 1 1
+H006 (13) 15 0 0 0
+H014 (5) 16 2 2 2
+H009 (12) 17 1 0 1
+H007 (3) 18 1 0 1
+H012 (11) 19 1 1 1
+H011 (14) 19 0 0 0
+H013 (6) 20 0 0 0
+H010 (2) 22 1 1 1
+H001 (7) 22 2 2 2
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (10) 21 1 1 1
+H000 (9)* 22 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /------------------ H002
+ |
+ | /--------- H008
+ /-------16-------15
+ | | \--------- H006
+ | |
+ /--------17 \------------------ H014
+ | |
+ /-------18 \--------------------------- H009
+ | |
+ | \------------------------------------- H007
+ /-------19
+ | +---------------------------------------------- H012
+ | |
+ /-------20 \---------------------------------------------- H011
+ | |
+ | \------------------------------------------------------- H013
+ |
+ +---------------------------------------------------------------- H010
+ |
+--------22---------------------------------------------------------------- H001
+ |
+ | /--------- H003
+ +-----------------------------------------------------21
+ | \--------- H005
+ |
+ \---------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_20 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_20 --> node_19 8 1 1.000 2 ==> 1
+ 9 1 0.333 2 ==> 1
+ 10 1 0.500 2 ==> 1
+ node_18 --> node_17 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_16 --> node_15 11 1 0.500 2 ==> 1
+ node_15 --> H008 9 1 0.333 1 ==> 2
+ node_16 --> H014 9 1 0.333 1 ==> 2
+ 10 1 0.500 1 ==> 2
+ node_17 --> H009 12 1 0.333 2 --> 1
+ node_18 --> H007 12 1 0.333 2 --> 1
+ node_19 --> H012 11 1 0.500 2 ==> 1
+ node_22 --> H010 5 1 1.000 2 ==> 1
+ node_22 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 36:
+
+Branch lengths and linkages for tree #36
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 24 root 0 0 0
+ 22 24 0 0 2
+ 21 22 2 2 2
+ 20 21 3 1 3
+ 19 20 2 2 2
+H002 (1) 19 0 0 0
+ 17 19 0 0 1
+ 16 17 2 2 2
+H007 (3) 16 1 0 1
+ 15 16 0 0 1
+H012 (11) 15 1 1 1
+H011 (14) 15 0 0 0
+H009 (12) 17 1 0 1
+ 18 19 1 1 1
+H008 (4) 18 1 1 1
+H006 (13) 18 0 0 0
+H014 (5) 20 0 0 0
+H001 (7) 21 0 0 2
+H013 (6) 22 2 0 2
+H010 (2) 24 1 1 1
+ 23 24 1 1 1
+H003 (8) 23 1 1 1
+H005 (10) 23 1 1 1
+H000 (9)* 24 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /-------------------------------- H002
+ |
+ | /---------------- H007
+ | |
+ | /------16 /-------- H012
+ | | \------15
+ /-------19------17 \-------- H011
+ | | |
+ | | \------------------------ H009
+ | |
+ /------20 | /-------- H008
+ | | \----------------------18
+ | | \-------- H006
+ /------21 |
+ | | \----------------------------------------- H014
+ | |
+ /------22 \------------------------------------------------- H001
+ | |
+ | \--------------------------------------------------------- H013
+ |
+ +----------------------------------------------------------------- H010
+-------24
+ | /-------- H003
+ +-------------------------------------------------------23
+ | \-------- H005
+ |
+ \----------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_21 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_21 --> node_20 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_20 --> node_19 9 1 0.500 2 ==> 1
+ 10 1 1.000 2 ==> 1
+ node_17 --> node_16 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 --> 1
+ node_15 --> H012 11 1 0.500 2 ==> 1
+ node_17 --> H009 12 1 0.333 2 --> 1
+ node_19 --> node_18 11 1 0.500 2 ==> 1
+ node_18 --> H008 9 1 0.500 1 ==> 2
+ node_22 --> H013 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ node_24 --> H010 5 1 1.000 2 ==> 1
+ node_24 --> node_23 3 1 1.000 2 ==> 1
+ node_23 --> H003 4 1 1.000 2 ==> 1
+ node_23 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 37:
+
+Branch lengths and linkages for tree #37
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 22 root 0 0 0
+ 20 22 2 2 2
+ 19 20 3 3 3
+ 18 19 0 0 1
+ 17 18 2 2 2
+ 15 17 0 0 1
+H002 (1) 15 0 0 0
+H014 (5) 15 2 2 2
+H009 (12) 15 1 1 1
+ 16 17 1 0 1
+H008 (4) 16 1 1 1
+H006 (13) 16 0 0 0
+H012 (11) 18 1 0 1
+H007 (3) 19 1 1 1
+H011 (14) 19 0 0 0
+H013 (6) 20 0 0 0
+H010 (2) 22 1 1 1
+H001 (7) 22 2 2 2
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (10) 21 1 1 1
+H000 (9)* 22 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /---------- H002
+ |
+ /---------15---------- H014
+ | |
+ | \---------- H009
+ /--------17
+ | | /---------- H008
+ | \---------16
+ /---------18 \---------- H006
+ | |
+ | \------------------------------- H012
+ /--------19
+ | +------------------------------------------ H007
+ | |
+ /---------20 \------------------------------------------ H011
+ | |
+ | \---------------------------------------------------- H013
+ |
+ +--------------------------------------------------------------- H010
+ |
+---------22--------------------------------------------------------------- H001
+ |
+ | /---------- H003
+ +---------------------------------------------------21
+ | \---------- H005
+ |
+ \--------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_20 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_20 --> node_19 8 1 1.000 2 ==> 1
+ 9 1 0.333 2 ==> 1
+ 10 1 0.500 2 ==> 1
+ node_18 --> node_17 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_15 --> H014 9 1 0.333 1 ==> 2
+ 10 1 0.500 1 ==> 2
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_17 --> node_16 11 1 0.500 2 --> 1
+ node_16 --> H008 9 1 0.333 1 ==> 2
+ node_18 --> H012 11 1 0.500 2 --> 1
+ node_19 --> H007 12 1 0.333 2 ==> 1
+ node_22 --> H010 5 1 1.000 2 ==> 1
+ node_22 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 38:
+
+Branch lengths and linkages for tree #38
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 21 23 2 2 2
+ 20 21 2 2 3
+ 18 20 2 2 2
+ 15 18 1 0 1
+H002 (1) 15 0 0 0
+H009 (12) 15 1 1 1
+ 17 18 0 0 1
+ 16 17 1 1 1
+H008 (4) 16 0 0 1
+H006 (13) 16 1 0 1
+H014 (5) 17 1 1 2
+ 19 20 1 0 1
+H007 (3) 19 1 1 1
+H012 (11) 19 1 1 1
+H011 (14) 19 0 0 0
+H013 (6) 21 0 0 0
+H010 (2) 23 1 1 1
+H001 (7) 23 2 2 2
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (10) 22 1 1 1
+H000 (9)* 23 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /---------- H002
+ /-------------------15
+ | \---------- H009
+ |
+ /---------18 /---------- H008
+ | | /---------16
+ | | | \---------- H006
+ | \--------17
+ /--------20 \--------------------- H014
+ | |
+ | | /---------- H007
+ | | |
+ /---------21 \------------------------------19---------- H012
+ | | |
+ | | \---------- H011
+ | |
+ | \---------------------------------------------------- H013
+ |
+ +--------------------------------------------------------------- H010
+---------23
+ +--------------------------------------------------------------- H001
+ |
+ | /---------- H003
+ +---------------------------------------------------22
+ | \---------- H005
+ |
+ \--------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_21 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_21 --> node_20 8 1 1.000 2 ==> 1
+ 10 1 0.500 2 ==> 1
+ node_20 --> node_18 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_18 --> node_15 9 1 0.333 2 --> 1
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_17 --> node_16 11 1 0.500 2 ==> 1
+ node_16 --> H006 9 1 0.333 2 --> 1
+ node_17 --> H014 10 1 0.500 1 ==> 2
+ node_20 --> node_19 9 1 0.333 2 --> 1
+ node_19 --> H007 12 1 0.333 2 ==> 1
+ node_19 --> H012 11 1 0.500 2 ==> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+ node_23 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 39:
+
+Branch lengths and linkages for tree #39
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 22 root 0 0 0
+ 20 22 2 2 2
+ 19 20 1 1 2
+ 17 19 2 2 2
+ 16 17 1 0 1
+ 15 16 1 1 1
+H002 (1) 15 0 0 0
+H009 (12) 15 1 1 1
+H006 (13) 15 1 1 1
+H008 (4) 16 1 1 1
+H014 (5) 17 0 0 1
+ 18 19 2 1 2
+H007 (3) 18 1 1 1
+H012 (11) 18 1 1 1
+H011 (14) 18 0 0 0
+H013 (6) 20 0 0 0
+H010 (2) 22 1 1 1
+H001 (7) 22 2 2 2
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (10) 21 1 1 1
+H000 (9)* 22 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /---------- H002
+ |
+ /---------15---------- H009
+ | |
+ /--------16 \---------- H006
+ | |
+ /---------17 \--------------------- H008
+ | |
+ | \------------------------------- H014
+ /--------19
+ | | /---------- H007
+ | | |
+ | \------------------------------18---------- H012
+ /---------20 |
+ | | \---------- H011
+ | |
+ | \---------------------------------------------------- H013
+ |
+ +--------------------------------------------------------------- H010
+ |
+---------22--------------------------------------------------------------- H001
+ |
+ | /---------- H003
+ +---------------------------------------------------21
+ | \---------- H005
+ |
+ \--------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_20 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_20 --> node_19 8 1 1.000 2 ==> 1
+ node_19 --> node_17 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_17 --> node_16 10 1 0.500 2 --> 1
+ node_16 --> node_15 9 1 0.500 2 ==> 1
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_15 --> H006 11 1 0.333 2 ==> 1
+ node_16 --> H008 11 1 0.333 2 ==> 1
+ node_19 --> node_18 9 1 0.500 2 ==> 1
+ 10 1 0.500 2 --> 1
+ node_18 --> H007 12 1 0.333 2 ==> 1
+ node_18 --> H012 11 1 0.333 2 ==> 1
+ node_22 --> H010 5 1 1.000 2 ==> 1
+ node_22 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 40:
+
+Branch lengths and linkages for tree #40
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 22 root 0 0 0
+ 20 22 2 2 2
+ 19 20 2 2 3
+ 17 19 2 2 2
+ 15 17 1 0 1
+H002 (1) 15 0 0 0
+H009 (12) 15 1 1 1
+H006 (13) 15 1 1 1
+ 16 17 0 0 1
+H008 (4) 16 1 1 1
+H014 (5) 16 1 1 1
+ 18 19 1 0 1
+H007 (3) 18 1 1 1
+H012 (11) 18 1 1 1
+H011 (14) 18 0 0 0
+H013 (6) 20 0 0 0
+H010 (2) 22 1 1 1
+H001 (7) 22 2 2 2
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (10) 21 1 1 1
+H000 (9)* 22 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /------------ H002
+ |
+ /----------15------------ H009
+ | |
+ | \------------ H006
+ /----------17
+ | | /------------ H008
+ | \----------16
+ | \------------ H014
+ /-----------19
+ | | /------------ H007
+ | | |
+ | \----------------------18------------ H012
+ /----------20 |
+ | | \------------ H011
+ | |
+ | \------------------------------------------------- H013
+ |
+ +------------------------------------------------------------- H010
+ |
+-----------22------------------------------------------------------------- H001
+ |
+ | /------------ H003
+ +-----------------------------------------------21
+ | \------------ H005
+ |
+ \------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_20 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_20 --> node_19 8 1 1.000 2 ==> 1
+ 10 1 0.500 2 ==> 1
+ node_19 --> node_17 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_17 --> node_15 9 1 0.500 2 --> 1
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_15 --> H006 11 1 0.333 2 ==> 1
+ node_16 --> H008 11 1 0.333 2 ==> 1
+ node_16 --> H014 10 1 0.500 1 ==> 2
+ node_19 --> node_18 9 1 0.500 2 --> 1
+ node_18 --> H007 12 1 0.333 2 ==> 1
+ node_18 --> H012 11 1 0.333 2 ==> 1
+ node_22 --> H010 5 1 1.000 2 ==> 1
+ node_22 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 41:
+
+Branch lengths and linkages for tree #41
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 21 root 0 0 0
+ 19 21 2 2 2
+ 18 19 2 2 2
+ 16 18 2 2 2
+ 15 16 1 1 1
+H002 (1) 15 0 0 0
+H009 (12) 15 1 1 1
+H006 (13) 15 1 1 1
+H008 (4) 16 1 1 1
+H014 (5) 16 1 1 1
+ 17 18 1 1 1
+H007 (3) 17 1 1 1
+H012 (11) 17 1 1 1
+H011 (14) 17 0 0 0
+H013 (6) 19 0 0 0
+H010 (2) 21 1 1 1
+H001 (7) 21 2 2 2
+ 20 21 1 1 1
+H003 (8) 20 1 1 1
+H005 (10) 20 1 1 1
+H000 (9)* 21 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /------------ H002
+ |
+ /----------15------------ H009
+ | |
+ | \------------ H006
+ /----------16
+ | +------------------------ H008
+ | |
+ | \------------------------ H014
+ /-----------18
+ | | /------------ H007
+ | | |
+ | \----------------------17------------ H012
+ /----------19 |
+ | | \------------ H011
+ | |
+ | \------------------------------------------------- H013
+ |
+ +------------------------------------------------------------- H010
+ |
+-----------21------------------------------------------------------------- H001
+ |
+ | /------------ H003
+ +-----------------------------------------------20
+ | \------------ H005
+ |
+ \------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_19 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_19 --> node_18 8 1 1.000 2 ==> 1
+ 10 1 0.500 2 ==> 1
+ node_18 --> node_16 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_16 --> node_15 9 1 0.500 2 ==> 1
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_15 --> H006 11 1 0.333 2 ==> 1
+ node_16 --> H008 11 1 0.333 2 ==> 1
+ node_16 --> H014 10 1 0.500 1 ==> 2
+ node_18 --> node_17 9 1 0.500 2 ==> 1
+ node_17 --> H007 12 1 0.333 2 ==> 1
+ node_17 --> H012 11 1 0.333 2 ==> 1
+ node_21 --> H010 5 1 1.000 2 ==> 1
+ node_21 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_21 --> node_20 3 1 1.000 2 ==> 1
+ node_20 --> H003 4 1 1.000 2 ==> 1
+ node_20 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 42:
+
+Branch lengths and linkages for tree #42
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 21 root 0 0 0
+ 19 21 2 2 2
+ 18 19 3 3 3
+ 17 18 1 1 1
+ 16 17 2 2 2
+ 15 16 1 1 1
+H002 (1) 15 0 0 0
+H014 (5) 15 2 2 2
+H009 (12) 15 1 1 1
+H008 (4) 16 1 1 1
+H006 (13) 16 0 0 0
+H012 (11) 17 0 0 0
+H007 (3) 18 1 1 1
+H011 (14) 18 0 0 0
+H013 (6) 19 0 0 0
+H010 (2) 21 1 1 1
+H001 (7) 21 2 2 2
+ 20 21 1 1 1
+H003 (8) 20 1 1 1
+H005 (10) 20 1 1 1
+H000 (9)* 21 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /---------- H002
+ |
+ /---------15---------- H014
+ | |
+ | \---------- H009
+ /--------16
+ | +--------------------- H008
+ | |
+ /---------17 \--------------------- H006
+ | |
+ | \------------------------------- H012
+ /--------18
+ | +------------------------------------------ H007
+ | |
+ /---------19 \------------------------------------------ H011
+ | |
+ | \---------------------------------------------------- H013
+ |
+ +--------------------------------------------------------------- H010
+ |
+---------21--------------------------------------------------------------- H001
+ |
+ | /---------- H003
+ +---------------------------------------------------20
+ | \---------- H005
+ |
+ \--------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_19 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_19 --> node_18 8 1 1.000 2 ==> 1
+ 9 1 0.333 2 ==> 1
+ 10 1 0.500 2 ==> 1
+ node_18 --> node_17 11 1 0.500 2 ==> 1
+ node_17 --> node_16 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_16 --> node_15 11 1 0.500 1 ==> 2
+ node_15 --> H014 9 1 0.333 1 ==> 2
+ 10 1 0.500 1 ==> 2
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_16 --> H008 9 1 0.333 1 ==> 2
+ node_18 --> H007 12 1 0.333 2 ==> 1
+ node_21 --> H010 5 1 1.000 2 ==> 1
+ node_21 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_21 --> node_20 3 1 1.000 2 ==> 1
+ node_20 --> H003 4 1 1.000 2 ==> 1
+ node_20 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 43:
+
+Branch lengths and linkages for tree #43
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 24 root 0 0 0
+ 22 24 2 2 2
+ 21 22 3 3 3
+ 20 21 1 1 2
+ 19 20 1 1 1
+ 18 19 0 0 1
+ 15 18 0 0 1
+H002 (1) 15 0 0 0
+H009 (12) 15 1 1 1
+ 17 18 2 2 2
+ 16 17 0 0 1
+H007 (3) 16 1 1 1
+H011 (14) 16 0 0 0
+H012 (11) 17 1 0 1
+H006 (13) 19 1 0 1
+H008 (4) 20 1 0 1
+H014 (5) 21 0 0 0
+H013 (6) 22 0 0 0
+H010 (2) 24 1 1 1
+H001 (7) 24 2 2 2
+ 23 24 1 1 1
+H003 (8) 23 1 1 1
+H005 (10) 23 1 1 1
+H000 (9)* 24 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /-------- H002
+ /--------------15
+ | \-------- H009
+ |
+ /------18 /-------- H007
+ | | /------16
+ | | | \-------- H011
+ /-------19 \------17
+ | | \---------------- H012
+ | |
+ /------20 \-------------------------------- H006
+ | |
+ /------21 \----------------------------------------- H008
+ | |
+ /------22 \------------------------------------------------- H014
+ | |
+ | \--------------------------------------------------------- H013
+ |
+ +----------------------------------------------------------------- H010
+ |
+-------24----------------------------------------------------------------- H001
+ |
+ | /-------- H003
+ +-------------------------------------------------------23
+ | \-------- H005
+ |
+ \----------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_24 --> node_22 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_22 --> node_21 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_21 --> node_20 10 1 1.000 2 ==> 1
+ node_20 --> node_19 9 1 1.000 2 ==> 1
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_18 --> node_17 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 ==> 1
+ node_17 --> H012 11 1 0.333 2 --> 1
+ node_19 --> H006 11 1 0.333 2 --> 1
+ node_20 --> H008 11 1 0.333 2 --> 1
+ node_24 --> H010 5 1 1.000 2 ==> 1
+ node_24 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_24 --> node_23 3 1 1.000 2 ==> 1
+ node_23 --> H003 4 1 1.000 2 ==> 1
+ node_23 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 44:
+
+Branch lengths and linkages for tree #44
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 24 root 0 0 0
+ 22 24 2 2 2
+ 21 22 3 3 3
+ 20 21 1 1 2
+ 15 20 1 0 1
+H002 (1) 15 0 0 0
+H009 (12) 15 1 1 1
+ 19 20 1 1 1
+ 18 19 1 0 1
+ 17 18 2 2 2
+ 16 17 1 1 1
+H007 (3) 16 1 1 1
+H011 (14) 16 0 0 0
+H012 (11) 17 0 0 0
+H006 (13) 18 0 0 0
+H008 (4) 19 0 0 1
+H014 (5) 21 0 0 0
+H013 (6) 22 0 0 0
+H010 (2) 24 1 1 1
+H001 (7) 24 2 2 2
+ 23 24 1 1 1
+H003 (8) 23 1 1 1
+H005 (10) 23 1 1 1
+H000 (9)* 24 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /-------- H002
+ /-------------------------------15
+ | \-------- H009
+ |
+ | /-------- H007
+ | /------16
+ /------20 | \-------- H011
+ | | /------17
+ | | | \---------------- H012
+ | | /------18
+ /------21 | | \------------------------ H006
+ | | \-------19
+ | | \-------------------------------- H008
+ /------22 |
+ | | \------------------------------------------------- H014
+ | |
+ | \--------------------------------------------------------- H013
+ |
+ +----------------------------------------------------------------- H010
+ |
+-------24----------------------------------------------------------------- H001
+ |
+ | /-------- H003
+ +-------------------------------------------------------23
+ | \-------- H005
+ |
+ \----------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_24 --> node_22 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_22 --> node_21 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_21 --> node_20 10 1 1.000 2 ==> 1
+ node_20 --> node_15 9 1 0.500 2 --> 1
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_20 --> node_19 11 1 0.500 2 ==> 1
+ node_19 --> node_18 9 1 0.500 2 --> 1
+ node_18 --> node_17 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_17 --> node_16 11 1 0.500 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 ==> 1
+ node_24 --> H010 5 1 1.000 2 ==> 1
+ node_24 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_24 --> node_23 3 1 1.000 2 ==> 1
+ node_23 --> H003 4 1 1.000 2 ==> 1
+ node_23 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 45:
+
+Branch lengths and linkages for tree #45
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 24 root 0 0 0
+ 22 24 2 2 2
+ 21 22 3 3 3
+ 20 21 1 1 2
+ 19 20 1 1 1
+ 15 19 0 0 1
+H002 (1) 15 0 0 0
+H009 (12) 15 1 1 1
+ 18 19 0 0 1
+ 17 18 2 2 2
+ 16 17 0 0 1
+H007 (3) 16 1 1 1
+H011 (14) 16 0 0 0
+H012 (11) 17 1 0 1
+H006 (13) 18 1 0 1
+H008 (4) 20 1 0 1
+H014 (5) 21 0 0 0
+H013 (6) 22 0 0 0
+H010 (2) 24 1 1 1
+H001 (7) 24 2 2 2
+ 23 24 1 1 1
+H003 (8) 23 1 1 1
+H005 (10) 23 1 1 1
+H000 (9)* 24 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /-------- H002
+ /----------------------15
+ | \-------- H009
+ |
+ | /-------- H007
+ /-------19 /------16
+ | | | \-------- H011
+ | | /------17
+ | | | \---------------- H012
+ /------20 \------18
+ | | \------------------------ H006
+ | |
+ /------21 \----------------------------------------- H008
+ | |
+ /------22 \------------------------------------------------- H014
+ | |
+ | \--------------------------------------------------------- H013
+ |
+ +----------------------------------------------------------------- H010
+ |
+-------24----------------------------------------------------------------- H001
+ |
+ | /-------- H003
+ +-------------------------------------------------------23
+ | \-------- H005
+ |
+ \----------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_24 --> node_22 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_22 --> node_21 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_21 --> node_20 10 1 1.000 2 ==> 1
+ node_20 --> node_19 9 1 1.000 2 ==> 1
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_18 --> node_17 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 ==> 1
+ node_17 --> H012 11 1 0.333 2 --> 1
+ node_18 --> H006 11 1 0.333 2 --> 1
+ node_20 --> H008 11 1 0.333 2 --> 1
+ node_24 --> H010 5 1 1.000 2 ==> 1
+ node_24 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_24 --> node_23 3 1 1.000 2 ==> 1
+ node_23 --> H003 4 1 1.000 2 ==> 1
+ node_23 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 46:
+
+Branch lengths and linkages for tree #46
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 21 23 2 2 2
+ 20 21 3 3 3
+ 19 20 2 2 2
+H002 (1) 19 0 0 0
+ 18 19 0 0 1
+ 16 18 2 2 2
+ 15 16 0 0 1
+H007 (3) 15 1 1 1
+H011 (14) 15 0 0 0
+H012 (11) 16 1 0 1
+ 17 18 1 0 1
+H008 (4) 17 1 1 1
+H006 (13) 17 0 0 0
+H009 (12) 19 1 1 1
+H014 (5) 20 0 0 0
+H001 (7) 21 0 0 0
+H010 (2) 23 1 1 1
+H013 (6) 23 2 2 2
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (10) 22 1 1 1
+H000 (9)* 23 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /------------------------------------- H002
+ |
+ | /--------- H007
+ | /-------15
+ | | \--------- H011
+ | /-------16
+ /-------19 | \------------------ H012
+ | +--------18
+ | | | /--------- H008
+ | | \----------------17
+ /-------20 | \--------- H006
+ | | |
+ | | \------------------------------------- H009
+ /-------21 |
+ | | \---------------------------------------------- H014
+ | |
+ | \------------------------------------------------------- H001
+ |
+ +---------------------------------------------------------------- H010
+ |
+--------23---------------------------------------------------------------- H013
+ |
+ | /--------- H003
+ +-----------------------------------------------------22
+ | \--------- H005
+ |
+ \---------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_21 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_21 --> node_20 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_20 --> node_19 9 1 0.500 2 ==> 1
+ 10 1 1.000 2 ==> 1
+ node_18 --> node_16 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ node_16 --> H012 11 1 0.500 2 --> 1
+ node_18 --> node_17 11 1 0.500 2 --> 1
+ node_17 --> H008 9 1 0.500 1 ==> 2
+ node_19 --> H009 12 1 0.333 2 ==> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+ node_23 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 47:
+
+Branch lengths and linkages for tree #47
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 24 root 0 0 0
+ 22 24 0 0 2
+ 21 22 2 2 2
+ 20 21 3 1 3
+ 19 20 2 2 2
+H002 (1) 19 0 0 0
+ 18 19 0 0 1
+ 16 18 2 2 2
+ 15 16 0 0 1
+H007 (3) 15 1 1 1
+H011 (14) 15 0 0 0
+H012 (11) 16 1 0 1
+ 17 18 1 0 1
+H008 (4) 17 1 1 1
+H006 (13) 17 0 0 0
+H009 (12) 19 1 1 1
+H014 (5) 20 0 0 0
+H001 (7) 21 0 0 2
+H013 (6) 22 2 0 2
+H010 (2) 24 1 1 1
+ 23 24 1 1 1
+H003 (8) 23 1 1 1
+H005 (10) 23 1 1 1
+H000 (9)* 24 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /-------------------------------- H002
+ |
+ | /-------- H007
+ | /------15
+ | | \-------- H011
+ | /------16
+ /-------19 | \---------------- H012
+ | +------18
+ | | | /-------- H008
+ | | \--------------17
+ /------20 | \-------- H006
+ | | |
+ | | \-------------------------------- H009
+ /------21 |
+ | | \----------------------------------------- H014
+ | |
+ /------22 \------------------------------------------------- H001
+ | |
+ | \--------------------------------------------------------- H013
+ |
+ +----------------------------------------------------------------- H010
+-------24
+ | /-------- H003
+ +-------------------------------------------------------23
+ | \-------- H005
+ |
+ \----------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_21 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_21 --> node_20 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_20 --> node_19 9 1 0.500 2 ==> 1
+ 10 1 1.000 2 ==> 1
+ node_18 --> node_16 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ node_16 --> H012 11 1 0.500 2 --> 1
+ node_18 --> node_17 11 1 0.500 2 --> 1
+ node_17 --> H008 9 1 0.500 1 ==> 2
+ node_19 --> H009 12 1 0.333 2 ==> 1
+ node_22 --> H013 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ node_24 --> H010 5 1 1.000 2 ==> 1
+ node_24 --> node_23 3 1 1.000 2 ==> 1
+ node_23 --> H003 4 1 1.000 2 ==> 1
+ node_23 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 48:
+
+Branch lengths and linkages for tree #48
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 22 root 0 0 0
+ 20 22 2 2 2
+ 19 20 3 3 3
+ 18 19 1 1 2
+ 17 18 1 1 1
+ 16 17 0 0 1
+H002 (1) 16 0 0 0
+ 15 16 2 2 2
+H007 (3) 15 1 1 1
+H012 (11) 15 1 1 1
+H011 (14) 15 0 0 0
+H009 (12) 16 1 1 1
+H006 (13) 17 1 0 1
+H008 (4) 18 1 0 1
+H014 (5) 19 0 0 0
+H013 (6) 20 0 0 0
+H010 (2) 22 1 1 1
+H001 (7) 22 2 2 2
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (10) 21 1 1 1
+H000 (9)* 22 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /------------------ H002
+ |
+ | /--------- H007
+ | |
+ /-------16-------15--------- H012
+ | | |
+ | | \--------- H011
+ /--------17 |
+ | | \------------------ H009
+ | |
+ /-------18 \--------------------------- H006
+ | |
+ /-------19 \------------------------------------- H008
+ | |
+ /-------20 \---------------------------------------------- H014
+ | |
+ | \------------------------------------------------------- H013
+ |
+ +---------------------------------------------------------------- H010
+ |
+--------22---------------------------------------------------------------- H001
+ |
+ | /--------- H003
+ +-----------------------------------------------------21
+ | \--------- H005
+ |
+ \---------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_20 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_20 --> node_19 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_19 --> node_18 10 1 1.000 2 ==> 1
+ node_18 --> node_17 9 1 1.000 2 ==> 1
+ node_16 --> node_15 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ node_15 --> H012 11 1 0.333 2 ==> 1
+ node_16 --> H009 12 1 0.333 2 ==> 1
+ node_17 --> H006 11 1 0.333 2 --> 1
+ node_18 --> H008 11 1 0.333 2 --> 1
+ node_22 --> H010 5 1 1.000 2 ==> 1
+ node_22 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 49:
+
+Branch lengths and linkages for tree #49
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 24 root 0 0 0
+ 22 24 2 2 2
+ 21 22 3 3 3
+ 20 21 1 1 2
+ 18 20 1 0 1
+H002 (1) 18 0 0 0
+ 17 18 0 0 1
+ 16 17 2 2 2
+H007 (3) 16 1 0 1
+ 15 16 0 0 1
+H012 (11) 15 1 1 1
+H011 (14) 15 0 0 0
+H009 (12) 17 1 0 1
+ 19 20 1 1 1
+H008 (4) 19 0 0 1
+H006 (13) 19 1 0 1
+H014 (5) 21 0 0 0
+H001 (7) 22 0 0 0
+H010 (2) 24 1 1 1
+H013 (6) 24 2 2 2
+ 23 24 1 1 1
+H003 (8) 23 1 1 1
+H005 (10) 23 1 1 1
+H000 (9)* 24 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /-------------------------------- H002
+ |
+ | /---------------- H007
+ /-------18 |
+ | | /------16 /-------- H012
+ | | | \------15
+ | \------17 \-------- H011
+ /------20 |
+ | | \------------------------ H009
+ | |
+ | | /-------- H008
+ /------21 \-------------------------------19
+ | | \-------- H006
+ | |
+ /------22 \------------------------------------------------- H014
+ | |
+ | \--------------------------------------------------------- H001
+ |
+ +----------------------------------------------------------------- H010
+ |
+-------24----------------------------------------------------------------- H013
+ |
+ | /-------- H003
+ +-------------------------------------------------------23
+ | \-------- H005
+ |
+ \----------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_24 --> node_22 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_22 --> node_21 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_21 --> node_20 10 1 1.000 2 ==> 1
+ node_20 --> node_18 9 1 0.500 2 --> 1
+ node_17 --> node_16 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 --> 1
+ node_15 --> H012 11 1 0.500 2 ==> 1
+ node_17 --> H009 12 1 0.333 2 --> 1
+ node_20 --> node_19 11 1 0.500 2 ==> 1
+ node_19 --> H006 9 1 0.500 2 --> 1
+ node_24 --> H010 5 1 1.000 2 ==> 1
+ node_24 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ node_24 --> node_23 3 1 1.000 2 ==> 1
+ node_23 --> H003 4 1 1.000 2 ==> 1
+ node_23 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 50:
+
+Branch lengths and linkages for tree #50
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 21 23 2 2 2
+ 20 21 3 3 3
+ 19 20 0 0 1
+ 18 19 2 2 2
+ 17 18 0 0 1
+H002 (1) 17 0 0 0
+ 16 17 0 0 1
+ 15 16 1 1 1
+H008 (4) 15 1 0 1
+H006 (13) 15 0 0 1
+H014 (5) 16 2 1 2
+H009 (12) 18 1 0 1
+H007 (3) 19 1 0 1
+H012 (11) 20 1 1 1
+H011 (14) 20 0 0 0
+H013 (6) 21 0 0 0
+H010 (2) 23 1 1 1
+H001 (7) 23 2 2 2
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (10) 22 1 1 1
+H000 (9)* 23 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /------------------------ H002
+ |
+ | /-------- H008
+ /------17 /------15
+ | | | \-------- H006
+ | \------16
+ /-------18 \---------------- H014
+ | |
+ /------19 \-------------------------------- H009
+ | |
+ | \----------------------------------------- H007
+ /------20
+ | +------------------------------------------------- H012
+ | |
+ /------21 \------------------------------------------------- H011
+ | |
+ | \--------------------------------------------------------- H013
+ |
+ +----------------------------------------------------------------- H010
+ |
+-------23----------------------------------------------------------------- H001
+ |
+ | /-------- H003
+ +-------------------------------------------------------22
+ | \-------- H005
+ |
+ \----------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_21 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_21 --> node_20 8 1 1.000 2 ==> 1
+ 9 1 0.333 2 ==> 1
+ 10 1 0.500 2 ==> 1
+ node_19 --> node_18 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_16 --> node_15 11 1 0.500 2 ==> 1
+ node_15 --> H008 9 1 0.333 1 --> 2
+ node_16 --> H014 9 1 0.333 1 --> 2
+ 10 1 0.500 1 ==> 2
+ node_18 --> H009 12 1 0.333 2 --> 1
+ node_19 --> H007 12 1 0.333 2 --> 1
+ node_20 --> H012 11 1 0.500 2 ==> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+ node_23 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 51:
+
+Branch lengths and linkages for tree #51
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 25 root 0 0 0
+ 23 25 0 0 2
+ 22 23 2 2 2
+ 21 22 3 1 3
+ 20 21 1 1 2
+ 18 20 1 0 1
+H002 (1) 18 0 0 0
+ 17 18 0 0 1
+ 16 17 2 2 2
+H007 (3) 16 1 0 1
+ 15 16 0 0 1
+H012 (11) 15 1 1 1
+H011 (14) 15 0 0 0
+H009 (12) 17 1 0 1
+ 19 20 1 1 1
+H008 (4) 19 0 0 1
+H006 (13) 19 1 0 1
+H014 (5) 21 0 0 0
+H001 (7) 22 0 0 2
+H013 (6) 23 2 0 2
+H010 (2) 25 1 1 1
+ 24 25 1 1 1
+H003 (8) 24 1 1 1
+H005 (10) 24 1 1 1
+H000 (9)* 25 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /----------------------------- H002
+ |
+ | /--------------- H007
+ /-----18 |
+ | | /-----16 /------- H012
+ | | | \------15
+ | \-----17 \------- H011
+ /------20 |
+ | | \---------------------- H009
+ | |
+ | | /------- H008
+ /-----21 \---------------------------19
+ | | \------- H006
+ | |
+ /-----22 \-------------------------------------------- H014
+ | |
+ /------23 \--------------------------------------------------- H001
+ | |
+ | \---------------------------------------------------------- H013
+ |
+ +------------------------------------------------------------------ H010
+------25
+ | /------- H003
+ +---------------------------------------------------------24
+ | \------- H005
+ |
+ \------------------------------------------------------------------ H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_22 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_22 --> node_21 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_21 --> node_20 10 1 1.000 2 ==> 1
+ node_20 --> node_18 9 1 0.500 2 --> 1
+ node_17 --> node_16 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 --> 1
+ node_15 --> H012 11 1 0.500 2 ==> 1
+ node_17 --> H009 12 1 0.333 2 --> 1
+ node_20 --> node_19 11 1 0.500 2 ==> 1
+ node_19 --> H006 9 1 0.500 2 --> 1
+ node_23 --> H013 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ node_25 --> H010 5 1 1.000 2 ==> 1
+ node_25 --> node_24 3 1 1.000 2 ==> 1
+ node_24 --> H003 4 1 1.000 2 ==> 1
+ node_24 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 52:
+
+Branch lengths and linkages for tree #52
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 21 23 2 2 2
+ 20 21 3 3 3
+ 19 20 0 0 1
+ 18 19 2 2 2
+ 17 18 0 0 1
+H002 (1) 17 0 0 0
+ 16 17 0 0 1
+ 15 16 1 1 1
+H008 (4) 15 1 0 1
+H014 (5) 15 1 1 2
+H006 (13) 16 1 0 1
+H009 (12) 18 1 0 1
+H007 (3) 19 1 0 1
+H012 (11) 20 1 1 1
+H011 (14) 20 0 0 0
+H013 (6) 21 0 0 0
+H010 (2) 23 1 1 1
+H001 (7) 23 2 2 2
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (10) 22 1 1 1
+H000 (9)* 23 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /------------------------ H002
+ |
+ | /-------- H008
+ /------17 /------15
+ | | | \-------- H014
+ | \------16
+ /-------18 \---------------- H006
+ | |
+ /------19 \-------------------------------- H009
+ | |
+ | \----------------------------------------- H007
+ /------20
+ | +------------------------------------------------- H012
+ | |
+ /------21 \------------------------------------------------- H011
+ | |
+ | \--------------------------------------------------------- H013
+ |
+ +----------------------------------------------------------------- H010
+ |
+-------23----------------------------------------------------------------- H001
+ |
+ | /-------- H003
+ +-------------------------------------------------------22
+ | \-------- H005
+ |
+ \----------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_21 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_21 --> node_20 8 1 1.000 2 ==> 1
+ 9 1 0.500 2 ==> 1
+ 10 1 0.500 2 ==> 1
+ node_19 --> node_18 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_16 --> node_15 9 1 0.500 1 ==> 2
+ node_15 --> H008 11 1 0.333 2 --> 1
+ node_15 --> H014 10 1 0.500 1 ==> 2
+ node_16 --> H006 11 1 0.333 2 --> 1
+ node_18 --> H009 12 1 0.333 2 --> 1
+ node_19 --> H007 12 1 0.333 2 --> 1
+ node_20 --> H012 11 1 0.333 2 ==> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+ node_23 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 53:
+
+Branch lengths and linkages for tree #53
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 24 root 0 0 0
+ 22 24 2 2 2
+ 21 22 3 3 3
+ 20 21 1 1 2
+ 19 20 1 1 1
+ 18 19 0 0 1
+H002 (1) 18 0 0 0
+ 17 18 0 0 1
+ 16 17 2 2 2
+H007 (3) 16 1 0 1
+ 15 16 0 0 1
+H012 (11) 15 1 1 1
+H011 (14) 15 0 0 0
+H009 (12) 17 1 0 1
+H006 (13) 19 1 0 1
+H008 (4) 20 1 0 1
+H014 (5) 21 0 0 0
+H001 (7) 22 0 0 0
+H010 (2) 24 1 1 1
+H013 (6) 24 2 2 2
+ 23 24 1 1 1
+H003 (8) 23 1 1 1
+H005 (10) 23 1 1 1
+H000 (9)* 24 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /----------------------------- H002
+ |
+ | /--------------- H007
+ /-----18 |
+ | | /-----16 /------- H012
+ | | | \------15
+ | \-----17 \------- H011
+ /------19 |
+ | | \---------------------- H009
+ | |
+ /-----20 \------------------------------------ H006
+ | |
+ /-----21 \-------------------------------------------- H008
+ | |
+ /------22 \--------------------------------------------------- H014
+ | |
+ | \---------------------------------------------------------- H001
+ |
+ +------------------------------------------------------------------ H010
+ |
+------24------------------------------------------------------------------ H013
+ |
+ | /------- H003
+ +---------------------------------------------------------23
+ | \------- H005
+ |
+ \------------------------------------------------------------------ H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_24 --> node_22 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_22 --> node_21 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_21 --> node_20 10 1 1.000 2 ==> 1
+ node_20 --> node_19 9 1 1.000 2 ==> 1
+ node_17 --> node_16 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 --> 1
+ node_15 --> H012 11 1 0.333 2 ==> 1
+ node_17 --> H009 12 1 0.333 2 --> 1
+ node_19 --> H006 11 1 0.333 2 --> 1
+ node_20 --> H008 11 1 0.333 2 --> 1
+ node_24 --> H010 5 1 1.000 2 ==> 1
+ node_24 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ node_24 --> node_23 3 1 1.000 2 ==> 1
+ node_23 --> H003 4 1 1.000 2 ==> 1
+ node_23 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 54:
+
+Branch lengths and linkages for tree #54
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 21 23 2 2 2
+ 20 21 3 3 3
+ 19 20 1 1 2
+ 18 19 1 1 1
+ 15 18 0 0 1
+H002 (1) 15 0 0 0
+H009 (12) 15 1 1 1
+ 17 18 2 2 2
+ 16 17 0 0 1
+H007 (3) 16 1 1 1
+H011 (14) 16 0 0 0
+H012 (11) 17 1 0 1
+H006 (13) 18 1 0 1
+H008 (4) 19 1 0 1
+H014 (5) 20 0 0 0
+H013 (6) 21 0 0 0
+H010 (2) 23 1 1 1
+H001 (7) 23 2 2 2
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (10) 22 1 1 1
+H000 (9)* 23 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /--------- H002
+ /----------------15
+ | \--------- H009
+ |
+ | /--------- H007
+ | /-------16
+ /--------18 | \--------- H011
+ | +-------17
+ | | \------------------ H012
+ /-------19 |
+ | | \--------------------------- H006
+ | |
+ /-------20 \------------------------------------- H008
+ | |
+ /-------21 \---------------------------------------------- H014
+ | |
+ | \------------------------------------------------------- H013
+ |
+ +---------------------------------------------------------------- H010
+ |
+--------23---------------------------------------------------------------- H001
+ |
+ | /--------- H003
+ +-----------------------------------------------------22
+ | \--------- H005
+ |
+ \---------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_21 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_21 --> node_20 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_20 --> node_19 10 1 1.000 2 ==> 1
+ node_19 --> node_18 9 1 1.000 2 ==> 1
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_18 --> node_17 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 ==> 1
+ node_17 --> H012 11 1 0.333 2 --> 1
+ node_18 --> H006 11 1 0.333 2 --> 1
+ node_19 --> H008 11 1 0.333 2 --> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+ node_23 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 55:
+
+Branch lengths and linkages for tree #55
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 25 root 0 0 0
+ 23 25 0 0 2
+ 22 23 2 2 2
+ 21 22 3 1 3
+ 20 21 1 1 2
+ 19 20 1 1 1
+ 18 19 0 0 1
+H002 (1) 18 0 0 0
+ 17 18 0 0 1
+ 16 17 2 2 2
+H007 (3) 16 1 0 1
+ 15 16 0 0 1
+H012 (11) 15 1 1 1
+H011 (14) 15 0 0 0
+H009 (12) 17 1 0 1
+H006 (13) 19 1 0 1
+H008 (4) 20 1 0 1
+H014 (5) 21 0 0 0
+H013 (6) 22 0 0 2
+H001 (7) 23 2 0 2
+H010 (2) 25 1 1 1
+ 24 25 1 1 1
+H003 (8) 24 1 1 1
+H005 (10) 24 1 1 1
+H000 (9)* 25 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /--------------------------- H002
+ |
+ | /------------- H007
+ /----18 |
+ | | /-----16 /------- H012
+ | | | \----15
+ | \-----17 \------- H011
+ /-----19 |
+ | | \-------------------- H009
+ | |
+ /----20 \--------------------------------- H006
+ | |
+ /-----21 \---------------------------------------- H008
+ | |
+ /-----22 \---------------------------------------------- H014
+ | |
+ /----23 \----------------------------------------------------- H013
+ | |
+ | \------------------------------------------------------------ H001
+ |
+ +------------------------------------------------------------------ H010
+------25
+ | /------- H003
+ +---------------------------------------------------------24
+ | \------- H005
+ |
+ \------------------------------------------------------------------ H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_22 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_22 --> node_21 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_21 --> node_20 10 1 1.000 2 ==> 1
+ node_20 --> node_19 9 1 1.000 2 ==> 1
+ node_17 --> node_16 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 --> 1
+ node_15 --> H012 11 1 0.333 2 ==> 1
+ node_17 --> H009 12 1 0.333 2 --> 1
+ node_19 --> H006 11 1 0.333 2 --> 1
+ node_20 --> H008 11 1 0.333 2 --> 1
+ node_23 --> H001 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ node_25 --> H010 5 1 1.000 2 ==> 1
+ node_25 --> node_24 3 1 1.000 2 ==> 1
+ node_24 --> H003 4 1 1.000 2 ==> 1
+ node_24 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 56:
+
+Branch lengths and linkages for tree #56
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 25 root 0 0 0
+ 23 25 0 0 2
+ 22 23 2 2 2
+ 21 22 3 1 3
+ 20 21 1 1 2
+ 19 20 1 1 1
+ 18 19 0 0 1
+H002 (1) 18 0 0 0
+ 17 18 0 0 1
+ 16 17 2 2 2
+H007 (3) 16 1 0 1
+ 15 16 0 0 1
+H012 (11) 15 1 1 1
+H011 (14) 15 0 0 0
+H009 (12) 17 1 0 1
+H006 (13) 19 1 0 1
+H008 (4) 20 1 0 1
+H014 (5) 21 0 0 0
+H001 (7) 22 0 0 2
+H013 (6) 23 2 0 2
+H010 (2) 25 1 1 1
+ 24 25 1 1 1
+H003 (8) 24 1 1 1
+H005 (10) 24 1 1 1
+H000 (9)* 25 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /--------------------------- H002
+ |
+ | /------------- H007
+ /----18 |
+ | | /-----16 /------- H012
+ | | | \----15
+ | \-----17 \------- H011
+ /-----19 |
+ | | \-------------------- H009
+ | |
+ /----20 \--------------------------------- H006
+ | |
+ /-----21 \---------------------------------------- H008
+ | |
+ /-----22 \---------------------------------------------- H014
+ | |
+ /----23 \----------------------------------------------------- H001
+ | |
+ | \------------------------------------------------------------ H013
+ |
+ +------------------------------------------------------------------ H010
+------25
+ | /------- H003
+ +---------------------------------------------------------24
+ | \------- H005
+ |
+ \------------------------------------------------------------------ H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_22 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_22 --> node_21 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_21 --> node_20 10 1 1.000 2 ==> 1
+ node_20 --> node_19 9 1 1.000 2 ==> 1
+ node_17 --> node_16 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 --> 1
+ node_15 --> H012 11 1 0.333 2 ==> 1
+ node_17 --> H009 12 1 0.333 2 --> 1
+ node_19 --> H006 11 1 0.333 2 --> 1
+ node_20 --> H008 11 1 0.333 2 --> 1
+ node_23 --> H013 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ node_25 --> H010 5 1 1.000 2 ==> 1
+ node_25 --> node_24 3 1 1.000 2 ==> 1
+ node_24 --> H003 4 1 1.000 2 ==> 1
+ node_24 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 57:
+
+Branch lengths and linkages for tree #57
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 21 23 2 2 2
+ 20 21 3 3 3
+ 19 20 1 1 1
+ 18 19 2 2 2
+ 17 18 0 0 1
+ 16 17 1 1 1
+ 15 16 0 0 1
+H002 (1) 15 0 0 0
+H009 (12) 15 1 1 1
+H014 (5) 16 2 1 2
+H008 (4) 17 1 0 1
+H006 (13) 18 0 0 0
+H012 (11) 19 0 0 0
+H007 (3) 20 1 1 1
+H011 (14) 20 0 0 0
+H013 (6) 21 0 0 0
+H010 (2) 23 1 1 1
+H001 (7) 23 2 2 2
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (10) 22 1 1 1
+H000 (9)* 23 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /-------- H002
+ /------15
+ | \-------- H009
+ /------16
+ | \---------------- H014
+ /------17
+ | \------------------------ H008
+ /-------18
+ | \-------------------------------- H006
+ /------19
+ | \----------------------------------------- H012
+ |
+ /------20------------------------------------------------- H007
+ | |
+ /------21 \------------------------------------------------- H011
+ | |
+ | \--------------------------------------------------------- H013
+ |
+ +----------------------------------------------------------------- H010
+ |
+-------23----------------------------------------------------------------- H001
+ |
+ | /-------- H003
+ +-------------------------------------------------------22
+ | \-------- H005
+ |
+ \----------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_21 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_21 --> node_20 8 1 1.000 2 ==> 1
+ 9 1 0.333 2 ==> 1
+ 10 1 0.500 2 ==> 1
+ node_20 --> node_19 11 1 0.500 2 ==> 1
+ node_19 --> node_18 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_17 --> node_16 11 1 0.500 1 ==> 2
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_16 --> H014 9 1 0.333 1 --> 2
+ 10 1 0.500 1 ==> 2
+ node_17 --> H008 9 1 0.333 1 --> 2
+ node_20 --> H007 12 1 0.333 2 ==> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+ node_23 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 58:
+
+Branch lengths and linkages for tree #58
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 20 root 0 0 0
+ 18 20 2 2 2
+ 17 18 3 3 3
+ 16 17 2 2 2
+H002 (1) 16 0 0 0
+ 15 16 1 1 1
+H008 (4) 15 1 1 1
+H014 (5) 15 1 1 1
+H009 (12) 16 1 1 1
+H006 (13) 16 1 1 1
+H007 (3) 17 1 1 1
+H012 (11) 17 1 1 1
+H011 (14) 17 0 0 0
+H013 (6) 18 0 0 0
+H010 (2) 20 1 1 1
+H001 (7) 20 2 2 2
+ 19 20 1 1 1
+H003 (8) 19 1 1 1
+H005 (10) 19 1 1 1
+H000 (9)* 20 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /------------------------ H002
+ |
+ | /------------ H008
+ +----------15
+ /----------16 \------------ H014
+ | |
+ | +------------------------ H009
+ | |
+ | \------------------------ H006
+ /-----------17
+ | +------------------------------------ H007
+ | |
+ | +------------------------------------ H012
+ /----------18 |
+ | | \------------------------------------ H011
+ | |
+ | \------------------------------------------------- H013
+ |
+ +------------------------------------------------------------- H010
+ |
+-----------20------------------------------------------------------------- H001
+ |
+ | /------------ H003
+ +-----------------------------------------------19
+ | \------------ H005
+ |
+ \------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_20 --> node_18 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_18 --> node_17 8 1 1.000 2 ==> 1
+ 9 1 0.500 2 ==> 1
+ 10 1 0.500 2 ==> 1
+ node_17 --> node_16 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_16 --> node_15 9 1 0.500 1 ==> 2
+ node_15 --> H008 11 1 0.333 2 ==> 1
+ node_15 --> H014 10 1 0.500 1 ==> 2
+ node_16 --> H009 12 1 0.333 2 ==> 1
+ node_16 --> H006 11 1 0.333 2 ==> 1
+ node_17 --> H007 12 1 0.333 2 ==> 1
+ node_17 --> H012 11 1 0.333 2 ==> 1
+ node_20 --> H010 5 1 1.000 2 ==> 1
+ node_20 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_20 --> node_19 3 1 1.000 2 ==> 1
+ node_19 --> H003 4 1 1.000 2 ==> 1
+ node_19 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 59:
+
+Branch lengths and linkages for tree #59
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 22 root 0 0 0
+ 20 22 2 2 2
+ 19 20 3 3 3
+ 18 19 1 1 2
+ 16 18 1 0 1
+H002 (1) 16 0 0 0
+ 15 16 2 2 2
+H007 (3) 15 1 1 1
+H012 (11) 15 1 1 1
+H011 (14) 15 0 0 0
+H009 (12) 16 1 1 1
+ 17 18 1 1 1
+H008 (4) 17 0 0 1
+H006 (13) 17 1 0 1
+H014 (5) 19 0 0 0
+H001 (7) 20 0 0 0
+H010 (2) 22 1 1 1
+H013 (6) 22 2 2 2
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (10) 21 1 1 1
+H000 (9)* 22 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /--------------------- H002
+ |
+ | /---------- H007
+ | |
+ /--------16---------15---------- H012
+ | | |
+ | | \---------- H011
+ | |
+ /---------18 \--------------------- H009
+ | |
+ | | /---------- H008
+ /--------19 \-------------------17
+ | | \---------- H006
+ | |
+ /---------20 \------------------------------------------ H014
+ | |
+ | \---------------------------------------------------- H001
+ |
+ +--------------------------------------------------------------- H010
+ |
+---------22--------------------------------------------------------------- H013
+ |
+ | /---------- H003
+ +---------------------------------------------------21
+ | \---------- H005
+ |
+ \--------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_20 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_20 --> node_19 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_19 --> node_18 10 1 1.000 2 ==> 1
+ node_18 --> node_16 9 1 0.500 2 --> 1
+ node_16 --> node_15 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ node_15 --> H012 11 1 0.500 2 ==> 1
+ node_16 --> H009 12 1 0.333 2 ==> 1
+ node_18 --> node_17 11 1 0.500 2 ==> 1
+ node_17 --> H006 9 1 0.500 2 --> 1
+ node_22 --> H010 5 1 1.000 2 ==> 1
+ node_22 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 60:
+
+Branch lengths and linkages for tree #60
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 21 23 2 2 2
+ 20 21 3 3 3
+ 19 20 1 1 1
+ 18 19 1 1 1
+H002 (1) 18 0 0 0
+ 17 18 0 0 1
+ 16 17 2 2 2
+H007 (3) 16 1 0 1
+ 15 16 0 0 1
+H012 (11) 15 1 1 1
+H011 (14) 15 0 0 0
+H009 (12) 17 1 0 1
+H006 (13) 18 1 1 1
+H008 (4) 19 1 1 1
+H014 (5) 20 0 0 0
+H001 (7) 21 0 0 0
+H010 (2) 23 1 1 1
+H013 (6) 23 2 2 2
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (10) 22 1 1 1
+H000 (9)* 23 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /-------------------------------- H002
+ |
+ | /---------------- H007
+ | |
+ | /------16 /-------- H012
+ /-------18 | \------15
+ | +------17 \-------- H011
+ | | |
+ | | \------------------------ H009
+ /------19 |
+ | | \-------------------------------- H006
+ | |
+ /------20 \----------------------------------------- H008
+ | |
+ /------21 \------------------------------------------------- H014
+ | |
+ | \--------------------------------------------------------- H001
+ |
+ +----------------------------------------------------------------- H010
+ |
+-------23----------------------------------------------------------------- H013
+ |
+ | /-------- H003
+ +-------------------------------------------------------22
+ | \-------- H005
+ |
+ \----------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_21 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_21 --> node_20 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_20 --> node_19 10 1 1.000 2 ==> 1
+ node_19 --> node_18 9 1 1.000 2 ==> 1
+ node_17 --> node_16 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 --> 1
+ node_15 --> H012 11 1 0.333 2 ==> 1
+ node_17 --> H009 12 1 0.333 2 --> 1
+ node_18 --> H006 11 1 0.333 2 ==> 1
+ node_19 --> H008 11 1 0.333 2 ==> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+ node_23 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 61:
+
+Branch lengths and linkages for tree #61
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 22 root 0 0 0
+ 20 22 2 2 2
+ 19 20 3 3 3
+ 18 19 2 2 2
+H002 (1) 18 0 0 0
+ 17 18 1 1 1
+ 16 17 2 2 2
+ 15 16 1 1 1
+H007 (3) 15 1 1 1
+H011 (14) 15 0 0 0
+H012 (11) 16 0 0 0
+H008 (4) 17 1 1 1
+H006 (13) 17 0 0 0
+H009 (12) 18 1 1 1
+H014 (5) 19 0 0 0
+H001 (7) 20 0 0 0
+H010 (2) 22 1 1 1
+H013 (6) 22 2 2 2
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (10) 21 1 1 1
+H000 (9)* 22 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /------------------------------------- H002
+ |
+ | /--------- H007
+ | /-------15
+ | | \--------- H011
+ | /-------16
+ /-------18 | \------------------ H012
+ | | |
+ | +--------17--------------------------- H008
+ | | |
+ /-------19 | \--------------------------- H006
+ | | |
+ | | \------------------------------------- H009
+ /-------20 |
+ | | \---------------------------------------------- H014
+ | |
+ | \------------------------------------------------------- H001
+ |
+ +---------------------------------------------------------------- H010
+ |
+--------22---------------------------------------------------------------- H013
+ |
+ | /--------- H003
+ +-----------------------------------------------------21
+ | \--------- H005
+ |
+ \---------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_20 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_20 --> node_19 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_19 --> node_18 9 1 0.500 2 ==> 1
+ 10 1 1.000 2 ==> 1
+ node_18 --> node_17 11 1 0.500 2 ==> 1
+ node_17 --> node_16 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_16 --> node_15 11 1 0.500 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ node_17 --> H008 9 1 0.500 1 ==> 2
+ node_18 --> H009 12 1 0.333 2 ==> 1
+ node_22 --> H010 5 1 1.000 2 ==> 1
+ node_22 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 62:
+
+Branch lengths and linkages for tree #62
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 21 23 0 0 2
+ 20 21 2 2 2
+ 19 20 3 1 3
+ 18 19 2 2 2
+H002 (1) 18 0 0 0
+ 17 18 1 1 1
+ 16 17 2 2 2
+ 15 16 1 1 1
+H007 (3) 15 1 1 1
+H011 (14) 15 0 0 0
+H012 (11) 16 0 0 0
+H008 (4) 17 1 1 1
+H006 (13) 17 0 0 0
+H009 (12) 18 1 1 1
+H014 (5) 19 0 0 0
+H001 (7) 20 0 0 2
+H013 (6) 21 2 0 2
+H010 (2) 23 1 1 1
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (10) 22 1 1 1
+H000 (9)* 23 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /-------------------------------- H002
+ |
+ | /-------- H007
+ | /------15
+ | | \-------- H011
+ | /------16
+ /-------18 | \---------------- H012
+ | | |
+ | +------17------------------------ H008
+ | | |
+ /------19 | \------------------------ H006
+ | | |
+ | | \-------------------------------- H009
+ /------20 |
+ | | \----------------------------------------- H014
+ | |
+ /------21 \------------------------------------------------- H001
+ | |
+ | \--------------------------------------------------------- H013
+ |
+ +----------------------------------------------------------------- H010
+-------23
+ | /-------- H003
+ +-------------------------------------------------------22
+ | \-------- H005
+ |
+ \----------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_20 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_20 --> node_19 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_19 --> node_18 9 1 0.500 2 ==> 1
+ 10 1 1.000 2 ==> 1
+ node_18 --> node_17 11 1 0.500 2 ==> 1
+ node_17 --> node_16 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_16 --> node_15 11 1 0.500 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ node_17 --> H008 9 1 0.500 1 ==> 2
+ node_18 --> H009 12 1 0.333 2 ==> 1
+ node_21 --> H013 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 63:
+
+Branch lengths and linkages for tree #63
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 21 23 0 0 2
+ 20 21 2 2 2
+ 19 20 3 1 3
+ 18 19 1 1 2
+ 16 18 1 0 1
+H002 (1) 16 0 0 0
+ 15 16 2 2 2
+H007 (3) 15 1 1 1
+H012 (11) 15 1 1 1
+H011 (14) 15 0 0 0
+H009 (12) 16 1 1 1
+ 17 18 1 1 1
+H008 (4) 17 0 0 1
+H006 (13) 17 1 0 1
+H014 (5) 19 0 0 0
+H001 (7) 20 0 0 2
+H013 (6) 21 2 0 2
+H010 (2) 23 1 1 1
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (10) 22 1 1 1
+H000 (9)* 23 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /------------------ H002
+ |
+ | /--------- H007
+ | |
+ /-------16-------15--------- H012
+ | | |
+ | | \--------- H011
+ | |
+ /--------18 \------------------ H009
+ | |
+ | | /--------- H008
+ /-------19 \----------------17
+ | | \--------- H006
+ | |
+ /-------20 \------------------------------------- H014
+ | |
+ /-------21 \---------------------------------------------- H001
+ | |
+ | \------------------------------------------------------- H013
+ |
+ +---------------------------------------------------------------- H010
+--------23
+ | /--------- H003
+ +-----------------------------------------------------22
+ | \--------- H005
+ |
+ \---------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_20 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_20 --> node_19 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_19 --> node_18 10 1 1.000 2 ==> 1
+ node_18 --> node_16 9 1 0.500 2 --> 1
+ node_16 --> node_15 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ node_15 --> H012 11 1 0.500 2 ==> 1
+ node_16 --> H009 12 1 0.333 2 ==> 1
+ node_18 --> node_17 11 1 0.500 2 ==> 1
+ node_17 --> H006 9 1 0.500 2 --> 1
+ node_21 --> H013 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 64:
+
+Branch lengths and linkages for tree #64
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 22 root 0 0 0
+ 20 22 0 0 2
+ 19 20 2 2 2
+ 18 19 3 1 3
+ 17 18 1 1 1
+ 16 17 1 1 1
+H002 (1) 16 0 0 0
+ 15 16 2 2 2
+H007 (3) 15 1 1 1
+H012 (11) 15 1 1 1
+H011 (14) 15 0 0 0
+H009 (12) 16 1 1 1
+H006 (13) 16 1 1 1
+H008 (4) 17 1 1 1
+H014 (5) 18 0 0 0
+H001 (7) 19 0 0 2
+H013 (6) 20 2 0 2
+H010 (2) 22 1 1 1
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (10) 21 1 1 1
+H000 (9)* 22 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /------------------ H002
+ |
+ | /--------- H007
+ | |
+ +-------15--------- H012
+ /-------16 |
+ | | \--------- H011
+ | |
+ | +------------------ H009
+ /--------17 |
+ | | \------------------ H006
+ | |
+ /-------18 \--------------------------- H008
+ | |
+ /-------19 \------------------------------------- H014
+ | |
+ /-------20 \---------------------------------------------- H001
+ | |
+ | \------------------------------------------------------- H013
+ |
+ +---------------------------------------------------------------- H010
+--------22
+ | /--------- H003
+ +-----------------------------------------------------21
+ | \--------- H005
+ |
+ \---------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_20 --> node_19 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_19 --> node_18 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_18 --> node_17 10 1 1.000 2 ==> 1
+ node_17 --> node_16 9 1 1.000 2 ==> 1
+ node_16 --> node_15 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ node_15 --> H012 11 1 0.333 2 ==> 1
+ node_16 --> H009 12 1 0.333 2 ==> 1
+ node_16 --> H006 11 1 0.333 2 ==> 1
+ node_17 --> H008 11 1 0.333 2 ==> 1
+ node_20 --> H013 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ node_22 --> H010 5 1 1.000 2 ==> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 65:
+
+Branch lengths and linkages for tree #65
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 21 root 0 0 0
+ 19 21 2 2 2
+ 18 19 3 3 3
+ 17 18 1 1 1
+ 16 17 1 1 1
+H002 (1) 16 0 0 0
+ 15 16 2 2 2
+H007 (3) 15 1 1 1
+H012 (11) 15 1 1 1
+H011 (14) 15 0 0 0
+H009 (12) 16 1 1 1
+H006 (13) 16 1 1 1
+H008 (4) 17 1 1 1
+H014 (5) 18 0 0 0
+H001 (7) 19 0 0 0
+H010 (2) 21 1 1 1
+H013 (6) 21 2 2 2
+ 20 21 1 1 1
+H003 (8) 20 1 1 1
+H005 (10) 20 1 1 1
+H000 (9)* 21 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /--------------------- H002
+ |
+ | /---------- H007
+ | |
+ +---------15---------- H012
+ /--------16 |
+ | | \---------- H011
+ | |
+ | +--------------------- H009
+ /---------17 |
+ | | \--------------------- H006
+ | |
+ /--------18 \------------------------------- H008
+ | |
+ /---------19 \------------------------------------------ H014
+ | |
+ | \---------------------------------------------------- H001
+ |
+ +--------------------------------------------------------------- H010
+ |
+---------21--------------------------------------------------------------- H013
+ |
+ | /---------- H003
+ +---------------------------------------------------20
+ | \---------- H005
+ |
+ \--------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_19 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_19 --> node_18 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_18 --> node_17 10 1 1.000 2 ==> 1
+ node_17 --> node_16 9 1 1.000 2 ==> 1
+ node_16 --> node_15 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ node_15 --> H012 11 1 0.333 2 ==> 1
+ node_16 --> H009 12 1 0.333 2 ==> 1
+ node_16 --> H006 11 1 0.333 2 ==> 1
+ node_17 --> H008 11 1 0.333 2 ==> 1
+ node_21 --> H010 5 1 1.000 2 ==> 1
+ node_21 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ node_21 --> node_20 3 1 1.000 2 ==> 1
+ node_20 --> H003 4 1 1.000 2 ==> 1
+ node_20 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 66:
+
+Branch lengths and linkages for tree #66
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 21 23 2 2 2
+ 20 21 3 3 3
+ 19 20 1 1 1
+ 18 19 1 1 1
+H002 (1) 18 0 0 0
+ 17 18 0 0 1
+ 16 17 2 2 2
+ 15 16 0 0 1
+H007 (3) 15 1 1 1
+H011 (14) 15 0 0 0
+H012 (11) 16 1 0 1
+H006 (13) 17 1 0 1
+H009 (12) 18 1 1 1
+H008 (4) 19 1 1 1
+H014 (5) 20 0 0 0
+H013 (6) 21 0 0 0
+H010 (2) 23 1 1 1
+H001 (7) 23 2 2 2
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (10) 22 1 1 1
+H000 (9)* 23 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /-------------------------------- H002
+ |
+ | /-------- H007
+ | /------15
+ | | \-------- H011
+ /-------18 /------16
+ | | | \---------------- H012
+ | +------17
+ | | \------------------------ H006
+ /------19 |
+ | | \-------------------------------- H009
+ | |
+ /------20 \----------------------------------------- H008
+ | |
+ /------21 \------------------------------------------------- H014
+ | |
+ | \--------------------------------------------------------- H013
+ |
+ +----------------------------------------------------------------- H010
+ |
+-------23----------------------------------------------------------------- H001
+ |
+ | /-------- H003
+ +-------------------------------------------------------22
+ | \-------- H005
+ |
+ \----------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_21 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_21 --> node_20 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_20 --> node_19 10 1 1.000 2 ==> 1
+ node_19 --> node_18 9 1 1.000 2 ==> 1
+ node_17 --> node_16 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ node_16 --> H012 11 1 0.333 2 --> 1
+ node_17 --> H006 11 1 0.333 2 --> 1
+ node_18 --> H009 12 1 0.333 2 ==> 1
+ node_19 --> H008 11 1 0.333 2 ==> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+ node_23 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 67:
+
+Branch lengths and linkages for tree #67
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 25 root 0 0 0
+ 23 25 0 0 2
+ 22 23 2 2 2
+ 21 22 3 1 3
+ 20 21 1 1 2
+ 19 20 1 1 1
+ 18 19 0 0 1
+ 15 18 0 0 1
+H002 (1) 15 0 0 0
+H009 (12) 15 1 1 1
+ 17 18 2 2 2
+ 16 17 0 0 1
+H007 (3) 16 1 1 1
+H011 (14) 16 0 0 0
+H012 (11) 17 1 0 1
+H006 (13) 19 1 0 1
+H008 (4) 20 1 0 1
+H014 (5) 21 0 0 0
+H013 (6) 22 0 0 2
+H001 (7) 23 2 0 2
+H010 (2) 25 1 1 1
+ 24 25 1 1 1
+H003 (8) 24 1 1 1
+H005 (10) 24 1 1 1
+H000 (9)* 25 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /------- H002
+ /-------------15
+ | \------- H009
+ |
+ /-----18 /------- H007
+ | | /------16
+ | | | \------- H011
+ /-----19 \-----17
+ | | \--------------- H012
+ | |
+ /------20 \----------------------------- H006
+ | |
+ /-----21 \------------------------------------ H008
+ | |
+ /-----22 \-------------------------------------------- H014
+ | |
+ /------23 \--------------------------------------------------- H013
+ | |
+ | \---------------------------------------------------------- H001
+ |
+ +------------------------------------------------------------------ H010
+------25
+ | /------- H003
+ +---------------------------------------------------------24
+ | \------- H005
+ |
+ \------------------------------------------------------------------ H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_22 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_22 --> node_21 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_21 --> node_20 10 1 1.000 2 ==> 1
+ node_20 --> node_19 9 1 1.000 2 ==> 1
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_18 --> node_17 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 ==> 1
+ node_17 --> H012 11 1 0.333 2 --> 1
+ node_19 --> H006 11 1 0.333 2 --> 1
+ node_20 --> H008 11 1 0.333 2 --> 1
+ node_23 --> H001 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ node_25 --> H010 5 1 1.000 2 ==> 1
+ node_25 --> node_24 3 1 1.000 2 ==> 1
+ node_24 --> H003 4 1 1.000 2 ==> 1
+ node_24 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 68:
+
+Branch lengths and linkages for tree #68
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 24 root 0 0 0
+ 22 24 0 0 2
+ 21 22 2 2 2
+ 20 21 3 1 3
+ 19 20 1 1 1
+ 18 19 1 1 1
+H002 (1) 18 0 0 0
+ 17 18 0 0 1
+ 16 17 2 2 2
+ 15 16 0 0 1
+H007 (3) 15 1 1 1
+H011 (14) 15 0 0 0
+H012 (11) 16 1 0 1
+H006 (13) 17 1 0 1
+H009 (12) 18 1 1 1
+H008 (4) 19 1 1 1
+H014 (5) 20 0 0 0
+H013 (6) 21 0 0 2
+H001 (7) 22 2 0 2
+H010 (2) 24 1 1 1
+ 23 24 1 1 1
+H003 (8) 23 1 1 1
+H005 (10) 23 1 1 1
+H000 (9)* 24 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /----------------------------- H002
+ |
+ | /------- H007
+ | /------15
+ | | \------- H011
+ /-----18 /-----16
+ | | | \--------------- H012
+ | +-----17
+ | | \---------------------- H006
+ /------19 |
+ | | \----------------------------- H009
+ | |
+ /-----20 \------------------------------------ H008
+ | |
+ /-----21 \-------------------------------------------- H014
+ | |
+ /------22 \--------------------------------------------------- H013
+ | |
+ | \---------------------------------------------------------- H001
+ |
+ +------------------------------------------------------------------ H010
+------24
+ | /------- H003
+ +---------------------------------------------------------23
+ | \------- H005
+ |
+ \------------------------------------------------------------------ H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_21 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_21 --> node_20 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_20 --> node_19 10 1 1.000 2 ==> 1
+ node_19 --> node_18 9 1 1.000 2 ==> 1
+ node_17 --> node_16 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ node_16 --> H012 11 1 0.333 2 --> 1
+ node_17 --> H006 11 1 0.333 2 --> 1
+ node_18 --> H009 12 1 0.333 2 ==> 1
+ node_19 --> H008 11 1 0.333 2 ==> 1
+ node_22 --> H001 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ node_24 --> H010 5 1 1.000 2 ==> 1
+ node_24 --> node_23 3 1 1.000 2 ==> 1
+ node_23 --> H003 4 1 1.000 2 ==> 1
+ node_23 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 69:
+
+Branch lengths and linkages for tree #69
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 22 root 0 0 0
+ 20 22 2 2 2
+ 19 20 3 3 3
+ 18 19 1 1 2
+ 17 18 1 1 1
+ 16 17 0 0 1
+H002 (1) 16 0 0 0
+ 15 16 2 2 2
+H007 (3) 15 1 1 1
+H012 (11) 15 1 1 1
+H011 (14) 15 0 0 0
+H009 (12) 16 1 1 1
+H006 (13) 17 1 0 1
+H008 (4) 18 1 0 1
+H014 (5) 19 0 0 0
+H001 (7) 20 0 0 0
+H010 (2) 22 1 1 1
+H013 (6) 22 2 2 2
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (10) 21 1 1 1
+H000 (9)* 22 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /------------------ H002
+ |
+ | /--------- H007
+ | |
+ /-------16-------15--------- H012
+ | | |
+ | | \--------- H011
+ /--------17 |
+ | | \------------------ H009
+ | |
+ /-------18 \--------------------------- H006
+ | |
+ /-------19 \------------------------------------- H008
+ | |
+ /-------20 \---------------------------------------------- H014
+ | |
+ | \------------------------------------------------------- H001
+ |
+ +---------------------------------------------------------------- H010
+ |
+--------22---------------------------------------------------------------- H013
+ |
+ | /--------- H003
+ +-----------------------------------------------------21
+ | \--------- H005
+ |
+ \---------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_20 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_20 --> node_19 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_19 --> node_18 10 1 1.000 2 ==> 1
+ node_18 --> node_17 9 1 1.000 2 ==> 1
+ node_16 --> node_15 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ node_15 --> H012 11 1 0.333 2 ==> 1
+ node_16 --> H009 12 1 0.333 2 ==> 1
+ node_17 --> H006 11 1 0.333 2 --> 1
+ node_18 --> H008 11 1 0.333 2 --> 1
+ node_22 --> H010 5 1 1.000 2 ==> 1
+ node_22 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 70:
+
+Branch lengths and linkages for tree #70
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 21 23 0 0 2
+ 20 21 2 2 2
+ 19 20 3 1 3
+ 18 19 1 1 2
+ 17 18 1 1 1
+ 16 17 0 0 1
+H002 (1) 16 0 0 0
+ 15 16 2 2 2
+H007 (3) 15 1 1 1
+H012 (11) 15 1 1 1
+H011 (14) 15 0 0 0
+H009 (12) 16 1 1 1
+H006 (13) 17 1 0 1
+H008 (4) 18 1 0 1
+H014 (5) 19 0 0 0
+H001 (7) 20 0 0 2
+H013 (6) 21 2 0 2
+H010 (2) 23 1 1 1
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (10) 22 1 1 1
+H000 (9)* 23 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /---------------- H002
+ |
+ | /-------- H007
+ | |
+ /------16------15-------- H012
+ | | |
+ | | \-------- H011
+ /------17 |
+ | | \---------------- H009
+ | |
+ /-------18 \------------------------ H006
+ | |
+ /------19 \-------------------------------- H008
+ | |
+ /------20 \----------------------------------------- H014
+ | |
+ /------21 \------------------------------------------------- H001
+ | |
+ | \--------------------------------------------------------- H013
+ |
+ +----------------------------------------------------------------- H010
+-------23
+ | /-------- H003
+ +-------------------------------------------------------22
+ | \-------- H005
+ |
+ \----------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_20 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_20 --> node_19 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_19 --> node_18 10 1 1.000 2 ==> 1
+ node_18 --> node_17 9 1 1.000 2 ==> 1
+ node_16 --> node_15 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ node_15 --> H012 11 1 0.333 2 ==> 1
+ node_16 --> H009 12 1 0.333 2 ==> 1
+ node_17 --> H006 11 1 0.333 2 --> 1
+ node_18 --> H008 11 1 0.333 2 --> 1
+ node_21 --> H013 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 71:
+
+Branch lengths and linkages for tree #71
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 25 root 0 0 0
+ 23 25 0 0 2
+ 22 23 2 2 2
+ 21 22 3 1 3
+ 20 21 1 1 2
+ 19 20 1 1 1
+ 15 19 0 0 1
+H002 (1) 15 0 0 0
+H009 (12) 15 1 1 1
+ 18 19 0 0 1
+ 17 18 2 2 2
+ 16 17 0 0 1
+H007 (3) 16 1 1 1
+H011 (14) 16 0 0 0
+H012 (11) 17 1 0 1
+H006 (13) 18 1 0 1
+H008 (4) 20 1 0 1
+H014 (5) 21 0 0 0
+H013 (6) 22 0 0 2
+H001 (7) 23 2 0 2
+H010 (2) 25 1 1 1
+ 24 25 1 1 1
+H003 (8) 24 1 1 1
+H005 (10) 24 1 1 1
+H000 (9)* 25 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /------- H002
+ /--------------------15
+ | \------- H009
+ |
+ | /------- H007
+ /-----19 /------16
+ | | | \------- H011
+ | | /-----17
+ | | | \--------------- H012
+ /------20 \-----18
+ | | \---------------------- H006
+ | |
+ /-----21 \------------------------------------ H008
+ | |
+ /-----22 \-------------------------------------------- H014
+ | |
+ /------23 \--------------------------------------------------- H013
+ | |
+ | \---------------------------------------------------------- H001
+ |
+ +------------------------------------------------------------------ H010
+------25
+ | /------- H003
+ +---------------------------------------------------------24
+ | \------- H005
+ |
+ \------------------------------------------------------------------ H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_22 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_22 --> node_21 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_21 --> node_20 10 1 1.000 2 ==> 1
+ node_20 --> node_19 9 1 1.000 2 ==> 1
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_18 --> node_17 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 ==> 1
+ node_17 --> H012 11 1 0.333 2 --> 1
+ node_18 --> H006 11 1 0.333 2 --> 1
+ node_20 --> H008 11 1 0.333 2 --> 1
+ node_23 --> H001 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ node_25 --> H010 5 1 1.000 2 ==> 1
+ node_25 --> node_24 3 1 1.000 2 ==> 1
+ node_24 --> H003 4 1 1.000 2 ==> 1
+ node_24 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 72:
+
+Branch lengths and linkages for tree #72
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 24 root 0 0 0
+ 22 24 0 0 2
+ 21 22 2 2 2
+ 20 21 3 1 3
+ 19 20 1 1 2
+ 18 19 1 1 1
+ 15 18 0 0 1
+H002 (1) 15 0 0 0
+H009 (12) 15 1 1 1
+ 17 18 2 2 2
+ 16 17 0 0 1
+H007 (3) 16 1 1 1
+H011 (14) 16 0 0 0
+H012 (11) 17 1 0 1
+H006 (13) 18 1 0 1
+H008 (4) 19 1 0 1
+H014 (5) 20 0 0 0
+H013 (6) 21 0 0 2
+H001 (7) 22 2 0 2
+H010 (2) 24 1 1 1
+ 23 24 1 1 1
+H003 (8) 23 1 1 1
+H005 (10) 23 1 1 1
+H000 (9)* 24 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /-------- H002
+ /--------------15
+ | \-------- H009
+ |
+ | /-------- H007
+ | /------16
+ /------18 | \-------- H011
+ | +------17
+ | | \---------------- H012
+ /-------19 |
+ | | \------------------------ H006
+ | |
+ /------20 \-------------------------------- H008
+ | |
+ /------21 \----------------------------------------- H014
+ | |
+ /------22 \------------------------------------------------- H013
+ | |
+ | \--------------------------------------------------------- H001
+ |
+ +----------------------------------------------------------------- H010
+-------24
+ | /-------- H003
+ +-------------------------------------------------------23
+ | \-------- H005
+ |
+ \----------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_21 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_21 --> node_20 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_20 --> node_19 10 1 1.000 2 ==> 1
+ node_19 --> node_18 9 1 1.000 2 ==> 1
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_18 --> node_17 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 ==> 1
+ node_17 --> H012 11 1 0.333 2 --> 1
+ node_18 --> H006 11 1 0.333 2 --> 1
+ node_19 --> H008 11 1 0.333 2 --> 1
+ node_22 --> H001 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ node_24 --> H010 5 1 1.000 2 ==> 1
+ node_24 --> node_23 3 1 1.000 2 ==> 1
+ node_23 --> H003 4 1 1.000 2 ==> 1
+ node_23 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 73:
+
+Branch lengths and linkages for tree #73
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 24 root 0 0 0
+ 22 24 0 0 2
+ 21 22 2 2 2
+ 20 21 3 1 3
+ 19 20 1 1 1
+ 18 19 1 1 1
+H002 (1) 18 0 0 0
+ 17 18 0 0 1
+ 16 17 2 2 2
+H007 (3) 16 1 0 1
+ 15 16 0 0 1
+H012 (11) 15 1 1 1
+H011 (14) 15 0 0 0
+H009 (12) 17 1 0 1
+H006 (13) 18 1 1 1
+H008 (4) 19 1 1 1
+H014 (5) 20 0 0 0
+H013 (6) 21 0 0 2
+H001 (7) 22 2 0 2
+H010 (2) 24 1 1 1
+ 23 24 1 1 1
+H003 (8) 23 1 1 1
+H005 (10) 23 1 1 1
+H000 (9)* 24 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /----------------------------- H002
+ |
+ | /--------------- H007
+ | |
+ | /-----16 /------- H012
+ /-----18 | \------15
+ | +-----17 \------- H011
+ | | |
+ | | \---------------------- H009
+ /------19 |
+ | | \----------------------------- H006
+ | |
+ /-----20 \------------------------------------ H008
+ | |
+ /-----21 \-------------------------------------------- H014
+ | |
+ /------22 \--------------------------------------------------- H013
+ | |
+ | \---------------------------------------------------------- H001
+ |
+ +------------------------------------------------------------------ H010
+------24
+ | /------- H003
+ +---------------------------------------------------------23
+ | \------- H005
+ |
+ \------------------------------------------------------------------ H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_21 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_21 --> node_20 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_20 --> node_19 10 1 1.000 2 ==> 1
+ node_19 --> node_18 9 1 1.000 2 ==> 1
+ node_17 --> node_16 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 --> 1
+ node_15 --> H012 11 1 0.333 2 ==> 1
+ node_17 --> H009 12 1 0.333 2 --> 1
+ node_18 --> H006 11 1 0.333 2 ==> 1
+ node_19 --> H008 11 1 0.333 2 ==> 1
+ node_22 --> H001 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ node_24 --> H010 5 1 1.000 2 ==> 1
+ node_24 --> node_23 3 1 1.000 2 ==> 1
+ node_23 --> H003 4 1 1.000 2 ==> 1
+ node_23 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 74:
+
+Branch lengths and linkages for tree #74
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 21 23 2 2 2
+ 20 21 3 3 3
+ 19 20 0 0 1
+ 18 19 2 2 2
+ 15 18 0 0 1
+H002 (1) 15 0 0 0
+H009 (12) 15 1 1 1
+ 17 18 0 0 1
+ 16 17 1 1 1
+H008 (4) 16 1 0 1
+H014 (5) 16 1 1 2
+H006 (13) 17 1 0 1
+H012 (11) 19 1 0 1
+H007 (3) 20 1 1 1
+H011 (14) 20 0 0 0
+H013 (6) 21 0 0 0
+H010 (2) 23 1 1 1
+H001 (7) 23 2 2 2
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (10) 22 1 1 1
+H000 (9)* 23 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /--------- H002
+ /----------------15
+ | \--------- H009
+ |
+ /--------18 /--------- H008
+ | | /-------16
+ | | | \--------- H014
+ /-------19 \-------17
+ | | \------------------ H006
+ | |
+ | \------------------------------------- H012
+ /-------20
+ | +---------------------------------------------- H007
+ | |
+ /-------21 \---------------------------------------------- H011
+ | |
+ | \------------------------------------------------------- H013
+ |
+ +---------------------------------------------------------------- H010
+ |
+--------23---------------------------------------------------------------- H001
+ |
+ | /--------- H003
+ +-----------------------------------------------------22
+ | \--------- H005
+ |
+ \---------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_21 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_21 --> node_20 8 1 1.000 2 ==> 1
+ 9 1 0.500 2 ==> 1
+ 10 1 0.500 2 ==> 1
+ node_19 --> node_18 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_17 --> node_16 9 1 0.500 1 ==> 2
+ node_16 --> H008 11 1 0.333 2 --> 1
+ node_16 --> H014 10 1 0.500 1 ==> 2
+ node_17 --> H006 11 1 0.333 2 --> 1
+ node_19 --> H012 11 1 0.333 2 --> 1
+ node_20 --> H007 12 1 0.333 2 ==> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+ node_23 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 75:
+
+Branch lengths and linkages for tree #75
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 21 23 2 2 2
+ 20 21 3 3 3
+ 19 20 0 0 1
+ 18 19 2 2 2
+ 17 18 0 0 1
+ 15 17 0 0 1
+H002 (1) 15 0 0 0
+H009 (12) 15 1 1 1
+ 16 17 1 1 1
+H008 (4) 16 1 0 1
+H014 (5) 16 1 1 2
+H006 (13) 18 1 0 1
+H012 (11) 19 1 0 1
+H007 (3) 20 1 1 1
+H011 (14) 20 0 0 0
+H013 (6) 21 0 0 0
+H010 (2) 23 1 1 1
+H001 (7) 23 2 2 2
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (10) 22 1 1 1
+H000 (9)* 23 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /--------- H002
+ /-------15
+ | \--------- H009
+ /-------17
+ | | /--------- H008
+ | \-------16
+ /--------18 \--------- H014
+ | |
+ /-------19 \--------------------------- H006
+ | |
+ | \------------------------------------- H012
+ /-------20
+ | +---------------------------------------------- H007
+ | |
+ /-------21 \---------------------------------------------- H011
+ | |
+ | \------------------------------------------------------- H013
+ |
+ +---------------------------------------------------------------- H010
+ |
+--------23---------------------------------------------------------------- H001
+ |
+ | /--------- H003
+ +-----------------------------------------------------22
+ | \--------- H005
+ |
+ \---------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_21 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_21 --> node_20 8 1 1.000 2 ==> 1
+ 9 1 0.500 2 ==> 1
+ 10 1 0.500 2 ==> 1
+ node_19 --> node_18 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_17 --> node_16 9 1 0.500 1 ==> 2
+ node_16 --> H008 11 1 0.333 2 --> 1
+ node_16 --> H014 10 1 0.500 1 ==> 2
+ node_18 --> H006 11 1 0.333 2 --> 1
+ node_19 --> H012 11 1 0.333 2 --> 1
+ node_20 --> H007 12 1 0.333 2 ==> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+ node_23 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 76:
+
+Branch lengths and linkages for tree #76
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 22 root 0 0 0
+ 20 22 2 2 2
+ 19 20 3 3 3
+ 18 19 0 0 1
+ 17 18 2 2 2
+ 15 17 0 0 1
+H002 (1) 15 0 0 0
+H009 (12) 15 1 1 1
+ 16 17 1 1 1
+H008 (4) 16 1 0 1
+H014 (5) 16 1 1 2
+H006 (13) 17 1 0 1
+H012 (11) 18 1 0 1
+H007 (3) 19 1 1 1
+H011 (14) 19 0 0 0
+H013 (6) 20 0 0 0
+H010 (2) 22 1 1 1
+H001 (7) 22 2 2 2
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (10) 21 1 1 1
+H000 (9)* 22 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /---------- H002
+ /---------15
+ | \---------- H009
+ |
+ | /---------- H008
+ /--------17---------16
+ | | \---------- H014
+ | |
+ /---------18 \--------------------- H006
+ | |
+ | \------------------------------- H012
+ /--------19
+ | +------------------------------------------ H007
+ | |
+ /---------20 \------------------------------------------ H011
+ | |
+ | \---------------------------------------------------- H013
+ |
+ +--------------------------------------------------------------- H010
+ |
+---------22--------------------------------------------------------------- H001
+ |
+ | /---------- H003
+ +---------------------------------------------------21
+ | \---------- H005
+ |
+ \--------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_20 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_20 --> node_19 8 1 1.000 2 ==> 1
+ 9 1 0.500 2 ==> 1
+ 10 1 0.500 2 ==> 1
+ node_18 --> node_17 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_17 --> node_16 9 1 0.500 1 ==> 2
+ node_16 --> H008 11 1 0.333 2 --> 1
+ node_16 --> H014 10 1 0.500 1 ==> 2
+ node_17 --> H006 11 1 0.333 2 --> 1
+ node_18 --> H012 11 1 0.333 2 --> 1
+ node_19 --> H007 12 1 0.333 2 ==> 1
+ node_22 --> H010 5 1 1.000 2 ==> 1
+ node_22 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 77:
+
+Branch lengths and linkages for tree #77
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 24 root 0 0 0
+ 22 24 2 2 2
+ 21 22 3 3 3
+ 20 21 1 1 2
+ 15 20 1 0 1
+H002 (1) 15 0 0 0
+H009 (12) 15 1 1 1
+ 19 20 1 1 1
+ 18 19 1 0 1
+ 17 18 2 2 2
+ 16 17 1 1 1
+H007 (3) 16 1 1 1
+H011 (14) 16 0 0 0
+H012 (11) 17 0 0 0
+H006 (13) 18 0 0 0
+H008 (4) 19 0 0 1
+H014 (5) 21 0 0 0
+H001 (7) 22 0 0 0
+H010 (2) 24 1 1 1
+H013 (6) 24 2 2 2
+ 23 24 1 1 1
+H003 (8) 23 1 1 1
+H005 (10) 23 1 1 1
+H000 (9)* 24 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /-------- H002
+ /-------------------------------15
+ | \-------- H009
+ |
+ | /-------- H007
+ | /------16
+ /------20 | \-------- H011
+ | | /------17
+ | | | \---------------- H012
+ | | /------18
+ /------21 | | \------------------------ H006
+ | | \-------19
+ | | \-------------------------------- H008
+ /------22 |
+ | | \------------------------------------------------- H014
+ | |
+ | \--------------------------------------------------------- H001
+ |
+ +----------------------------------------------------------------- H010
+ |
+-------24----------------------------------------------------------------- H013
+ |
+ | /-------- H003
+ +-------------------------------------------------------23
+ | \-------- H005
+ |
+ \----------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_24 --> node_22 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_22 --> node_21 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_21 --> node_20 10 1 1.000 2 ==> 1
+ node_20 --> node_15 9 1 0.500 2 --> 1
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_20 --> node_19 11 1 0.500 2 ==> 1
+ node_19 --> node_18 9 1 0.500 2 --> 1
+ node_18 --> node_17 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_17 --> node_16 11 1 0.500 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 ==> 1
+ node_24 --> H010 5 1 1.000 2 ==> 1
+ node_24 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ node_24 --> node_23 3 1 1.000 2 ==> 1
+ node_23 --> H003 4 1 1.000 2 ==> 1
+ node_23 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 78:
+
+Branch lengths and linkages for tree #78
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 25 root 0 0 0
+ 23 25 0 0 2
+ 22 23 2 2 2
+ 21 22 3 1 3
+ 20 21 1 1 2
+ 15 20 1 0 1
+H002 (1) 15 0 0 0
+H009 (12) 15 1 1 1
+ 19 20 1 1 1
+ 18 19 1 0 1
+ 17 18 2 2 2
+ 16 17 1 1 1
+H007 (3) 16 1 1 1
+H011 (14) 16 0 0 0
+H012 (11) 17 0 0 0
+H006 (13) 18 0 0 0
+H008 (4) 19 0 0 1
+H014 (5) 21 0 0 0
+H001 (7) 22 0 0 2
+H013 (6) 23 2 0 2
+H010 (2) 25 1 1 1
+ 24 25 1 1 1
+H003 (8) 24 1 1 1
+H005 (10) 24 1 1 1
+H000 (9)* 25 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /------- H002
+ /---------------------------15
+ | \------- H009
+ |
+ | /------- H007
+ | /------16
+ /------20 | \------- H011
+ | | /-----17
+ | | | \--------------- H012
+ | | /-----18
+ /-----21 | | \---------------------- H006
+ | | \-----19
+ | | \----------------------------- H008
+ /-----22 |
+ | | \-------------------------------------------- H014
+ | |
+ /------23 \--------------------------------------------------- H001
+ | |
+ | \---------------------------------------------------------- H013
+ |
+ +------------------------------------------------------------------ H010
+------25
+ | /------- H003
+ +---------------------------------------------------------24
+ | \------- H005
+ |
+ \------------------------------------------------------------------ H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_22 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_22 --> node_21 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_21 --> node_20 10 1 1.000 2 ==> 1
+ node_20 --> node_15 9 1 0.500 2 --> 1
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_20 --> node_19 11 1 0.500 2 ==> 1
+ node_19 --> node_18 9 1 0.500 2 --> 1
+ node_18 --> node_17 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_17 --> node_16 11 1 0.500 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 ==> 1
+ node_23 --> H013 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ node_25 --> H010 5 1 1.000 2 ==> 1
+ node_25 --> node_24 3 1 1.000 2 ==> 1
+ node_24 --> H003 4 1 1.000 2 ==> 1
+ node_24 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 79:
+
+Branch lengths and linkages for tree #79
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 24 root 0 0 0
+ 22 24 0 0 2
+ 21 22 2 2 2
+ 20 21 3 1 3
+ 19 20 1 1 1
+ 18 19 1 1 1
+H002 (1) 18 0 0 0
+ 17 18 0 0 1
+ 16 17 2 2 2
+H007 (3) 16 1 0 1
+ 15 16 0 0 1
+H012 (11) 15 1 1 1
+H011 (14) 15 0 0 0
+H009 (12) 17 1 0 1
+H006 (13) 18 1 1 1
+H008 (4) 19 1 1 1
+H014 (5) 20 0 0 0
+H001 (7) 21 0 0 2
+H013 (6) 22 2 0 2
+H010 (2) 24 1 1 1
+ 23 24 1 1 1
+H003 (8) 23 1 1 1
+H005 (10) 23 1 1 1
+H000 (9)* 24 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /----------------------------- H002
+ |
+ | /--------------- H007
+ | |
+ | /-----16 /------- H012
+ /-----18 | \------15
+ | +-----17 \------- H011
+ | | |
+ | | \---------------------- H009
+ /------19 |
+ | | \----------------------------- H006
+ | |
+ /-----20 \------------------------------------ H008
+ | |
+ /-----21 \-------------------------------------------- H014
+ | |
+ /------22 \--------------------------------------------------- H001
+ | |
+ | \---------------------------------------------------------- H013
+ |
+ +------------------------------------------------------------------ H010
+------24
+ | /------- H003
+ +---------------------------------------------------------23
+ | \------- H005
+ |
+ \------------------------------------------------------------------ H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_21 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_21 --> node_20 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_20 --> node_19 10 1 1.000 2 ==> 1
+ node_19 --> node_18 9 1 1.000 2 ==> 1
+ node_17 --> node_16 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 --> 1
+ node_15 --> H012 11 1 0.333 2 ==> 1
+ node_17 --> H009 12 1 0.333 2 --> 1
+ node_18 --> H006 11 1 0.333 2 ==> 1
+ node_19 --> H008 11 1 0.333 2 ==> 1
+ node_22 --> H013 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ node_24 --> H010 5 1 1.000 2 ==> 1
+ node_24 --> node_23 3 1 1.000 2 ==> 1
+ node_23 --> H003 4 1 1.000 2 ==> 1
+ node_23 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 80:
+
+Branch lengths and linkages for tree #80
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 22 root 0 0 0
+ 20 22 2 2 2
+ 19 20 3 3 3
+ 18 19 0 0 1
+ 17 18 2 2 2
+ 16 17 0 0 1
+H002 (1) 16 0 0 0
+ 15 16 1 1 1
+H008 (4) 15 1 1 1
+H014 (5) 15 1 1 1
+H006 (13) 16 1 1 1
+H009 (12) 17 1 0 1
+H007 (3) 18 1 0 1
+H012 (11) 19 1 1 1
+H011 (14) 19 0 0 0
+H013 (6) 20 0 0 0
+H010 (2) 22 1 1 1
+H001 (7) 22 2 2 2
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (10) 21 1 1 1
+H000 (9)* 22 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /------------------ H002
+ |
+ | /--------- H008
+ /-------16-------15
+ | | \--------- H014
+ | |
+ /--------17 \------------------ H006
+ | |
+ /-------18 \--------------------------- H009
+ | |
+ | \------------------------------------- H007
+ /-------19
+ | +---------------------------------------------- H012
+ | |
+ /-------20 \---------------------------------------------- H011
+ | |
+ | \------------------------------------------------------- H013
+ |
+ +---------------------------------------------------------------- H010
+ |
+--------22---------------------------------------------------------------- H001
+ |
+ | /--------- H003
+ +-----------------------------------------------------21
+ | \--------- H005
+ |
+ \---------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_20 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_20 --> node_19 8 1 1.000 2 ==> 1
+ 9 1 0.500 2 ==> 1
+ 10 1 0.500 2 ==> 1
+ node_18 --> node_17 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_16 --> node_15 9 1 0.500 1 ==> 2
+ node_15 --> H008 11 1 0.333 2 ==> 1
+ node_15 --> H014 10 1 0.500 1 ==> 2
+ node_16 --> H006 11 1 0.333 2 ==> 1
+ node_17 --> H009 12 1 0.333 2 --> 1
+ node_18 --> H007 12 1 0.333 2 --> 1
+ node_19 --> H012 11 1 0.333 2 ==> 1
+ node_22 --> H010 5 1 1.000 2 ==> 1
+ node_22 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 81:
+
+Branch lengths and linkages for tree #81
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 22 root 0 0 0
+ 20 22 2 2 2
+ 19 20 3 3 3
+ 18 19 0 0 1
+ 17 18 2 2 2
+ 16 17 0 0 1
+H002 (1) 16 0 0 0
+ 15 16 1 1 1
+H008 (4) 15 1 1 1
+H014 (5) 15 1 1 1
+H009 (12) 16 1 1 1
+H006 (13) 17 1 0 1
+H012 (11) 18 1 0 1
+H007 (3) 19 1 1 1
+H011 (14) 19 0 0 0
+H013 (6) 20 0 0 0
+H010 (2) 22 1 1 1
+H001 (7) 22 2 2 2
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (10) 21 1 1 1
+H000 (9)* 22 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /------------------ H002
+ |
+ | /--------- H008
+ /-------16-------15
+ | | \--------- H014
+ | |
+ /--------17 \------------------ H009
+ | |
+ /-------18 \--------------------------- H006
+ | |
+ | \------------------------------------- H012
+ /-------19
+ | +---------------------------------------------- H007
+ | |
+ /-------20 \---------------------------------------------- H011
+ | |
+ | \------------------------------------------------------- H013
+ |
+ +---------------------------------------------------------------- H010
+ |
+--------22---------------------------------------------------------------- H001
+ |
+ | /--------- H003
+ +-----------------------------------------------------21
+ | \--------- H005
+ |
+ \---------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_20 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_20 --> node_19 8 1 1.000 2 ==> 1
+ 9 1 0.500 2 ==> 1
+ 10 1 0.500 2 ==> 1
+ node_18 --> node_17 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_16 --> node_15 9 1 0.500 1 ==> 2
+ node_15 --> H008 11 1 0.333 2 ==> 1
+ node_15 --> H014 10 1 0.500 1 ==> 2
+ node_16 --> H009 12 1 0.333 2 ==> 1
+ node_17 --> H006 11 1 0.333 2 --> 1
+ node_18 --> H012 11 1 0.333 2 --> 1
+ node_19 --> H007 12 1 0.333 2 ==> 1
+ node_22 --> H010 5 1 1.000 2 ==> 1
+ node_22 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 82:
+
+Branch lengths and linkages for tree #82
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 24 root 0 0 0
+ 22 24 2 2 2
+ 21 22 3 3 3
+ 20 21 1 1 2
+ 19 20 1 1 1
+ 18 19 0 0 1
+ 15 18 0 0 1
+H002 (1) 15 0 0 0
+H009 (12) 15 1 1 1
+ 17 18 2 2 2
+ 16 17 0 0 1
+H007 (3) 16 1 1 1
+H011 (14) 16 0 0 0
+H012 (11) 17 1 0 1
+H006 (13) 19 1 0 1
+H008 (4) 20 1 0 1
+H014 (5) 21 0 0 0
+H001 (7) 22 0 0 0
+H010 (2) 24 1 1 1
+H013 (6) 24 2 2 2
+ 23 24 1 1 1
+H003 (8) 23 1 1 1
+H005 (10) 23 1 1 1
+H000 (9)* 24 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /-------- H002
+ /--------------15
+ | \-------- H009
+ |
+ /------18 /-------- H007
+ | | /------16
+ | | | \-------- H011
+ /-------19 \------17
+ | | \---------------- H012
+ | |
+ /------20 \-------------------------------- H006
+ | |
+ /------21 \----------------------------------------- H008
+ | |
+ /------22 \------------------------------------------------- H014
+ | |
+ | \--------------------------------------------------------- H001
+ |
+ +----------------------------------------------------------------- H010
+ |
+-------24----------------------------------------------------------------- H013
+ |
+ | /-------- H003
+ +-------------------------------------------------------23
+ | \-------- H005
+ |
+ \----------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_24 --> node_22 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_22 --> node_21 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_21 --> node_20 10 1 1.000 2 ==> 1
+ node_20 --> node_19 9 1 1.000 2 ==> 1
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_18 --> node_17 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 ==> 1
+ node_17 --> H012 11 1 0.333 2 --> 1
+ node_19 --> H006 11 1 0.333 2 --> 1
+ node_20 --> H008 11 1 0.333 2 --> 1
+ node_24 --> H010 5 1 1.000 2 ==> 1
+ node_24 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ node_24 --> node_23 3 1 1.000 2 ==> 1
+ node_23 --> H003 4 1 1.000 2 ==> 1
+ node_23 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 83:
+
+Branch lengths and linkages for tree #83
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 25 root 0 0 0
+ 23 25 0 0 2
+ 22 23 2 2 2
+ 21 22 3 1 3
+ 20 21 1 1 2
+ 19 20 1 1 1
+ 18 19 0 0 1
+ 15 18 0 0 1
+H002 (1) 15 0 0 0
+H009 (12) 15 1 1 1
+ 17 18 2 2 2
+ 16 17 0 0 1
+H007 (3) 16 1 1 1
+H011 (14) 16 0 0 0
+H012 (11) 17 1 0 1
+H006 (13) 19 1 0 1
+H008 (4) 20 1 0 1
+H014 (5) 21 0 0 0
+H001 (7) 22 0 0 2
+H013 (6) 23 2 0 2
+H010 (2) 25 1 1 1
+ 24 25 1 1 1
+H003 (8) 24 1 1 1
+H005 (10) 24 1 1 1
+H000 (9)* 25 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /------- H002
+ /-------------15
+ | \------- H009
+ |
+ /-----18 /------- H007
+ | | /------16
+ | | | \------- H011
+ /-----19 \-----17
+ | | \--------------- H012
+ | |
+ /------20 \----------------------------- H006
+ | |
+ /-----21 \------------------------------------ H008
+ | |
+ /-----22 \-------------------------------------------- H014
+ | |
+ /------23 \--------------------------------------------------- H001
+ | |
+ | \---------------------------------------------------------- H013
+ |
+ +------------------------------------------------------------------ H010
+------25
+ | /------- H003
+ +---------------------------------------------------------24
+ | \------- H005
+ |
+ \------------------------------------------------------------------ H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_22 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_22 --> node_21 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_21 --> node_20 10 1 1.000 2 ==> 1
+ node_20 --> node_19 9 1 1.000 2 ==> 1
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_18 --> node_17 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 ==> 1
+ node_17 --> H012 11 1 0.333 2 --> 1
+ node_19 --> H006 11 1 0.333 2 --> 1
+ node_20 --> H008 11 1 0.333 2 --> 1
+ node_23 --> H013 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ node_25 --> H010 5 1 1.000 2 ==> 1
+ node_25 --> node_24 3 1 1.000 2 ==> 1
+ node_24 --> H003 4 1 1.000 2 ==> 1
+ node_24 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 84:
+
+Branch lengths and linkages for tree #84
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 24 root 0 0 0
+ 22 24 2 2 2
+ 21 22 3 3 3
+ 20 21 1 1 2
+ 19 20 1 1 1
+ 15 19 0 0 1
+H002 (1) 15 0 0 0
+H009 (12) 15 1 1 1
+ 18 19 0 0 1
+ 17 18 2 2 2
+ 16 17 0 0 1
+H007 (3) 16 1 1 1
+H011 (14) 16 0 0 0
+H012 (11) 17 1 0 1
+H006 (13) 18 1 0 1
+H008 (4) 20 1 0 1
+H014 (5) 21 0 0 0
+H001 (7) 22 0 0 0
+H010 (2) 24 1 1 1
+H013 (6) 24 2 2 2
+ 23 24 1 1 1
+H003 (8) 23 1 1 1
+H005 (10) 23 1 1 1
+H000 (9)* 24 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /-------- H002
+ /----------------------15
+ | \-------- H009
+ |
+ | /-------- H007
+ /-------19 /------16
+ | | | \-------- H011
+ | | /------17
+ | | | \---------------- H012
+ /------20 \------18
+ | | \------------------------ H006
+ | |
+ /------21 \----------------------------------------- H008
+ | |
+ /------22 \------------------------------------------------- H014
+ | |
+ | \--------------------------------------------------------- H001
+ |
+ +----------------------------------------------------------------- H010
+ |
+-------24----------------------------------------------------------------- H013
+ |
+ | /-------- H003
+ +-------------------------------------------------------23
+ | \-------- H005
+ |
+ \----------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_24 --> node_22 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_22 --> node_21 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_21 --> node_20 10 1 1.000 2 ==> 1
+ node_20 --> node_19 9 1 1.000 2 ==> 1
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_18 --> node_17 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 ==> 1
+ node_17 --> H012 11 1 0.333 2 --> 1
+ node_18 --> H006 11 1 0.333 2 --> 1
+ node_20 --> H008 11 1 0.333 2 --> 1
+ node_24 --> H010 5 1 1.000 2 ==> 1
+ node_24 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ node_24 --> node_23 3 1 1.000 2 ==> 1
+ node_23 --> H003 4 1 1.000 2 ==> 1
+ node_23 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 85:
+
+Branch lengths and linkages for tree #85
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 25 root 0 0 0
+ 23 25 0 0 2
+ 22 23 2 2 2
+ 21 22 3 1 3
+ 20 21 1 1 2
+ 19 20 1 1 1
+ 15 19 0 0 1
+H002 (1) 15 0 0 0
+H009 (12) 15 1 1 1
+ 18 19 0 0 1
+ 17 18 2 2 2
+ 16 17 0 0 1
+H007 (3) 16 1 1 1
+H011 (14) 16 0 0 0
+H012 (11) 17 1 0 1
+H006 (13) 18 1 0 1
+H008 (4) 20 1 0 1
+H014 (5) 21 0 0 0
+H001 (7) 22 0 0 2
+H013 (6) 23 2 0 2
+H010 (2) 25 1 1 1
+ 24 25 1 1 1
+H003 (8) 24 1 1 1
+H005 (10) 24 1 1 1
+H000 (9)* 25 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /------- H002
+ /--------------------15
+ | \------- H009
+ |
+ | /------- H007
+ /-----19 /------16
+ | | | \------- H011
+ | | /-----17
+ | | | \--------------- H012
+ /------20 \-----18
+ | | \---------------------- H006
+ | |
+ /-----21 \------------------------------------ H008
+ | |
+ /-----22 \-------------------------------------------- H014
+ | |
+ /------23 \--------------------------------------------------- H001
+ | |
+ | \---------------------------------------------------------- H013
+ |
+ +------------------------------------------------------------------ H010
+------25
+ | /------- H003
+ +---------------------------------------------------------24
+ | \------- H005
+ |
+ \------------------------------------------------------------------ H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_22 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_22 --> node_21 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_21 --> node_20 10 1 1.000 2 ==> 1
+ node_20 --> node_19 9 1 1.000 2 ==> 1
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_18 --> node_17 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 ==> 1
+ node_17 --> H012 11 1 0.333 2 --> 1
+ node_18 --> H006 11 1 0.333 2 --> 1
+ node_20 --> H008 11 1 0.333 2 --> 1
+ node_23 --> H013 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ node_25 --> H010 5 1 1.000 2 ==> 1
+ node_25 --> node_24 3 1 1.000 2 ==> 1
+ node_24 --> H003 4 1 1.000 2 ==> 1
+ node_24 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 86:
+
+Branch lengths and linkages for tree #86
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 24 root 0 0 0
+ 22 24 0 0 2
+ 21 22 2 2 2
+ 20 21 3 1 3
+ 19 20 1 1 1
+ 18 19 1 1 1
+H002 (1) 18 0 0 0
+ 17 18 0 0 1
+ 16 17 2 2 2
+ 15 16 0 0 1
+H007 (3) 15 1 1 1
+H011 (14) 15 0 0 0
+H012 (11) 16 1 0 1
+H006 (13) 17 1 0 1
+H009 (12) 18 1 1 1
+H008 (4) 19 1 1 1
+H014 (5) 20 0 0 0
+H001 (7) 21 0 0 2
+H013 (6) 22 2 0 2
+H010 (2) 24 1 1 1
+ 23 24 1 1 1
+H003 (8) 23 1 1 1
+H005 (10) 23 1 1 1
+H000 (9)* 24 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /----------------------------- H002
+ |
+ | /------- H007
+ | /------15
+ | | \------- H011
+ /-----18 /-----16
+ | | | \--------------- H012
+ | +-----17
+ | | \---------------------- H006
+ /------19 |
+ | | \----------------------------- H009
+ | |
+ /-----20 \------------------------------------ H008
+ | |
+ /-----21 \-------------------------------------------- H014
+ | |
+ /------22 \--------------------------------------------------- H001
+ | |
+ | \---------------------------------------------------------- H013
+ |
+ +------------------------------------------------------------------ H010
+------24
+ | /------- H003
+ +---------------------------------------------------------23
+ | \------- H005
+ |
+ \------------------------------------------------------------------ H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_21 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_21 --> node_20 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_20 --> node_19 10 1 1.000 2 ==> 1
+ node_19 --> node_18 9 1 1.000 2 ==> 1
+ node_17 --> node_16 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ node_16 --> H012 11 1 0.333 2 --> 1
+ node_17 --> H006 11 1 0.333 2 --> 1
+ node_18 --> H009 12 1 0.333 2 ==> 1
+ node_19 --> H008 11 1 0.333 2 ==> 1
+ node_22 --> H013 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ node_24 --> H010 5 1 1.000 2 ==> 1
+ node_24 --> node_23 3 1 1.000 2 ==> 1
+ node_23 --> H003 4 1 1.000 2 ==> 1
+ node_23 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 87:
+
+Branch lengths and linkages for tree #87
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 21 23 2 2 2
+ 20 21 3 3 3
+ 19 20 1 1 2
+ 18 19 1 1 1
+ 15 18 0 0 1
+H002 (1) 15 0 0 0
+H009 (12) 15 1 1 1
+ 17 18 2 2 2
+ 16 17 0 0 1
+H007 (3) 16 1 1 1
+H011 (14) 16 0 0 0
+H012 (11) 17 1 0 1
+H006 (13) 18 1 0 1
+H008 (4) 19 1 0 1
+H014 (5) 20 0 0 0
+H001 (7) 21 0 0 0
+H010 (2) 23 1 1 1
+H013 (6) 23 2 2 2
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (10) 22 1 1 1
+H000 (9)* 23 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /--------- H002
+ /----------------15
+ | \--------- H009
+ |
+ | /--------- H007
+ | /-------16
+ /--------18 | \--------- H011
+ | +-------17
+ | | \------------------ H012
+ /-------19 |
+ | | \--------------------------- H006
+ | |
+ /-------20 \------------------------------------- H008
+ | |
+ /-------21 \---------------------------------------------- H014
+ | |
+ | \------------------------------------------------------- H001
+ |
+ +---------------------------------------------------------------- H010
+ |
+--------23---------------------------------------------------------------- H013
+ |
+ | /--------- H003
+ +-----------------------------------------------------22
+ | \--------- H005
+ |
+ \---------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_21 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_21 --> node_20 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_20 --> node_19 10 1 1.000 2 ==> 1
+ node_19 --> node_18 9 1 1.000 2 ==> 1
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_18 --> node_17 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 ==> 1
+ node_17 --> H012 11 1 0.333 2 --> 1
+ node_18 --> H006 11 1 0.333 2 --> 1
+ node_19 --> H008 11 1 0.333 2 --> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+ node_23 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 88:
+
+Branch lengths and linkages for tree #88
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 24 root 0 0 0
+ 22 24 0 0 2
+ 21 22 2 2 2
+ 20 21 3 1 3
+ 19 20 1 1 2
+ 18 19 1 1 1
+ 15 18 0 0 1
+H002 (1) 15 0 0 0
+H009 (12) 15 1 1 1
+ 17 18 2 2 2
+ 16 17 0 0 1
+H007 (3) 16 1 1 1
+H011 (14) 16 0 0 0
+H012 (11) 17 1 0 1
+H006 (13) 18 1 0 1
+H008 (4) 19 1 0 1
+H014 (5) 20 0 0 0
+H001 (7) 21 0 0 2
+H013 (6) 22 2 0 2
+H010 (2) 24 1 1 1
+ 23 24 1 1 1
+H003 (8) 23 1 1 1
+H005 (10) 23 1 1 1
+H000 (9)* 24 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /-------- H002
+ /--------------15
+ | \-------- H009
+ |
+ | /-------- H007
+ | /------16
+ /------18 | \-------- H011
+ | +------17
+ | | \---------------- H012
+ /-------19 |
+ | | \------------------------ H006
+ | |
+ /------20 \-------------------------------- H008
+ | |
+ /------21 \----------------------------------------- H014
+ | |
+ /------22 \------------------------------------------------- H001
+ | |
+ | \--------------------------------------------------------- H013
+ |
+ +----------------------------------------------------------------- H010
+-------24
+ | /-------- H003
+ +-------------------------------------------------------23
+ | \-------- H005
+ |
+ \----------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_21 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_21 --> node_20 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_20 --> node_19 10 1 1.000 2 ==> 1
+ node_19 --> node_18 9 1 1.000 2 ==> 1
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_18 --> node_17 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 ==> 1
+ node_17 --> H012 11 1 0.333 2 --> 1
+ node_18 --> H006 11 1 0.333 2 --> 1
+ node_19 --> H008 11 1 0.333 2 --> 1
+ node_22 --> H013 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ node_24 --> H010 5 1 1.000 2 ==> 1
+ node_24 --> node_23 3 1 1.000 2 ==> 1
+ node_23 --> H003 4 1 1.000 2 ==> 1
+ node_23 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 89:
+
+Branch lengths and linkages for tree #89
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 21 23 2 2 2
+ 20 21 3 3 3
+ 19 20 1 1 1
+ 18 19 1 1 1
+H002 (1) 18 0 0 0
+ 17 18 0 0 1
+ 16 17 2 2 2
+ 15 16 0 0 1
+H007 (3) 15 1 1 1
+H011 (14) 15 0 0 0
+H012 (11) 16 1 0 1
+H006 (13) 17 1 0 1
+H009 (12) 18 1 1 1
+H008 (4) 19 1 1 1
+H014 (5) 20 0 0 0
+H001 (7) 21 0 0 0
+H010 (2) 23 1 1 1
+H013 (6) 23 2 2 2
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (10) 22 1 1 1
+H000 (9)* 23 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+ /-------------------------------- H002
+ |
+ | /-------- H007
+ | /------15
+ | | \-------- H011
+ /-------18 /------16
+ | | | \---------------- H012
+ | +------17
+ | | \------------------------ H006
+ /------19 |
+ | | \-------------------------------- H009
+ | |
+ /------20 \----------------------------------------- H008
+ | |
+ /------21 \------------------------------------------------- H014
+ | |
+ | \--------------------------------------------------------- H001
+ |
+ +----------------------------------------------------------------- H010
+ |
+-------23----------------------------------------------------------------- H013
+ |
+ | /-------- H003
+ +-------------------------------------------------------22
+ | \-------- H005
+ |
+ \----------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_21 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_21 --> node_20 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_20 --> node_19 10 1 1.000 2 ==> 1
+ node_19 --> node_18 9 1 1.000 2 ==> 1
+ node_17 --> node_16 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ node_16 --> H012 11 1 0.333 2 --> 1
+ node_17 --> H006 11 1 0.333 2 --> 1
+ node_18 --> H009 12 1 0.333 2 ==> 1
+ node_19 --> H008 11 1 0.333 2 ==> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+ node_23 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
diff --git a/trunk/test/paup/outgr_present/association/test.tree b/trunk/test/paup/outgr_present/association/test.tree
new file mode 100644
index 0000000000000000000000000000000000000000..ef628b523301e81bf373280a85bb3c896fbd5c78
--- /dev/null
+++ b/trunk/test/paup/outgr_present/association/test.tree
@@ -0,0 +1,120 @@
+#NEXUS
+
+Begin trees; [Treefile saved Tue Jan 10 21:04:10 2006]
+[!
+>Data file = /home/cbardel/recherche/logiciel/altree/test/paup/outgr_present/association/caco.paup
+>Heuristic search settings:
+> Optimality criterion = parsimony
+> Character-status summary:
+> Of 12 total characters:
+> All characters are of type 'unord'
+> All characters have equal weight
+> 2 characters are parsimony-uninformative
+> Number of parsimony-informative characters = 10
+> Starting tree(s) obtained via stepwise addition
+> Addition sequence: simple (reference taxon = H002)
+> Number of trees held at each step during stepwise addition = 1
+> Branch-swapping algorithm: tree-bisection-reconnection (TBR)
+> Steepest descent option not in effect
+> 'MaxTrees' setting = 2000 (will not be increased)
+> Branches collapsed (creating polytomies) if maximum branch length is zero
+> 'MulTrees' option in effect
+> Topological constraints not enforced
+> Trees are unrooted
+>
+>Heuristic search completed
+> Total number of rearrangements tried = 90130
+> Score of best tree(s) found = 20
+> Number of trees retained = 89
+> Time used = 1 sec (CPU time = 0.12 sec)
+]
+tree PAUP_1 = [&R] (H000,(((H002,(H007,H012,H011),(H008,H006),H009),H014),H013),H010,H001,(H003,H005));
+tree PAUP_2 = [&R] (H000,((((H002,(H008,H006),H009),(H007,H012,H011)),H014),H013),H010,H001,(H003,H005));
+tree PAUP_3 = [&R] (H000,((((H002,(H007,H012,H011),(H008,H006),H009),H014),H013),H001),H010,(H003,H005));
+tree PAUP_4 = [&R] (H000,(((H002,((H007,(H012,H011)),H009),(H008,H006)),H014),H013),H010,H001,(H003,H005));
+tree PAUP_5 = [&R] (H000,((((H002,(H008,H006),H009),H014),(H007,H012,H011)),H013),H010,H001,(H003,H005));
+tree PAUP_6 = [&R] (H000,(((H002,(((H007,H011),H012),(H008,H006)),H009),H014),H013),H010,H001,(H003,H005));
+tree PAUP_7 = [&R] (H000,(((H002,(((H007,H011),H012),H008,H006),H009),H014),H013),H010,H001,(H003,H005));
+tree PAUP_8 = [&R] (H000,((((H002,((H007,(H012,H011)),H009)),(H008,H006)),H014),H013),H010,H001,(H003,H005));
+tree PAUP_9 = [&R] (H000,((((((H002,(H008,H006)),H009),H007),H012,H011),H014),H013),H010,H001,(H003,H005));
+tree PAUP_10 = [&R] (H000,((((H002,(H008,H006),H009),H007,H012,H011),H014),H013),H010,H001,(H003,H005));
+tree PAUP_11 = [&R] (H000,(((((H002,((H007,(H012,H011)),H009)),H006),H008),H014),H013),H010,H001,(H003,H005));
+tree PAUP_12 = [&R] (H000,(((H002,(H008,H006),H014,H009),H007,H012,H011),H013),H010,H001,(H003,H005));
+tree PAUP_13 = [&R] (H000,(((H002,(H007,H012,H011),(H008,H006),H009),H014),H001),H010,H013,(H003,H005));
+tree PAUP_14 = [&R] (H000,((((H002,(H007,H012,H011),(H008,H006),H009),H014),H001),H013),H010,(H003,H005));
+tree PAUP_15 = [&R] (H000,((((H002,(H007,H012,H011),H009),(H008,H006)),H014),H013),H010,H001,(H003,H005));
+tree PAUP_16 = [&R] (H000,((((H002,(H007,H012,H011),H009,H006),H008),H014),H013),H010,H001,(H003,H005));
+tree PAUP_17 = [&R] (H000,(((((H002,(H008,H006),H009),(H007,H012,H011)),H014),H013),H001),H010,(H003,H005));
+tree PAUP_18 = [&R] (H000,(((((H002,(H007,H012,H011),H009),(H008,H006)),H014),H013),H001),H010,(H003,H005));
+tree PAUP_19 = [&R] (H000,((((((H002,(H007,H012,H011),H009),H006),H008),H014),H013),H001),H010,(H003,H005));
+tree PAUP_20 = [&R] (H000,((((H002,(((H007,H011),H012),(H008,H006)),H009),H014),H013),H001),H010,(H003,H005));
+tree PAUP_21 = [&R] (H000,((((H002,(((H007,H011),H012),H008,H006),H009),H014),H013),H001),H010,(H003,H005));
+tree PAUP_22 = [&R] (H000,((((H002,((H007,(H012,H011)),H009),(H008,H006)),H014),H013),H001),H010,(H003,H005));
+tree PAUP_23 = [&R] (H000,((((((H002,H009),(H008,H006)),H012),H007,H011),H014),H013),H010,H001,(H003,H005));
+tree PAUP_24 = [&R] (H000,(((((H002,H009),(H008,H006)),H014),(H007,H012,H011)),H013),H010,H001,(H003,H005));
+tree PAUP_25 = [&R] (H000,((((((H002,H009),H008,H006),H012),H007,H011),H014),H013),H010,H001,(H003,H005));
+tree PAUP_26 = [&R] (H000,((((((H002,H009),H006),H008),H014),(H007,H012,H011)),H013),H010,H001,(H003,H005));
+tree PAUP_27 = [&R] (H000,(((H002,((H008,H006),H014),H009),H007,H012,H011),H013),H010,H001,(H003,H005));
+tree PAUP_28 = [&R] (H000,(((H002,((H008,H014),H006),H009),H007,H012,H011),H013),H010,H001,(H003,H005));
+tree PAUP_29 = [&R] (H000,(((((H002,(H007,H012,H011),H009,H006),H008),H014),H013),H001),H010,(H003,H005));
+tree PAUP_30 = [&R] (H000,((((H002,H009),(H008,H006),H014),(H007,H012,H011)),H013),H010,H001,(H003,H005));
+tree PAUP_31 = [&R] (H000,(((((H002,((H007,(H012,H011)),H009)),(H008,H006)),H014),H013),H001),H010,(H003,H005));
+tree PAUP_32 = [&R] (H000,(((((H002,H009),((((H007,H011),H012),H006),H008)),H014),H013),H001),H010,(H003,H005));
+tree PAUP_33 = [&R] (H000,((((H002,((H007,(H012,H011)),H009),H006),H008),H014),H013),H010,H001,(H003,H005));
+tree PAUP_34 = [&R] (H000,(((H002,((H007,(H012,H011)),H009),(H008,H006)),H014),H001),H010,H013,(H003,H005));
+tree PAUP_35 = [&R] (H000,(((((H002,(H008,H006),H014),H009),H007),H012,H011),H013),H010,H001,(H003,H005));
+tree PAUP_36 = [&R] (H000,((((H002,((H007,(H012,H011)),H009),(H008,H006)),H014),H001),H013),H010,(H003,H005));
+tree PAUP_37 = [&R] (H000,(((((H002,H014,H009),(H008,H006)),H012),H007,H011),H013),H010,H001,(H003,H005));
+tree PAUP_38 = [&R] (H000,((((H002,H009),((H008,H006),H014)),(H007,H012,H011)),H013),H010,H001,(H003,H005));
+tree PAUP_39 = [&R] (H000,(((((H002,H009,H006),H008),H014),(H007,H012,H011)),H013),H010,H001,(H003,H005));
+tree PAUP_40 = [&R] (H000,((((H002,H009,H006),(H008,H014)),(H007,H012,H011)),H013),H010,H001,(H003,H005));
+tree PAUP_41 = [&R] (H000,((((H002,H009,H006),H008,H014),(H007,H012,H011)),H013),H010,H001,(H003,H005));
+tree PAUP_42 = [&R] (H000,(((((H002,H014,H009),H008,H006),H012),H007,H011),H013),H010,H001,(H003,H005));
+tree PAUP_43 = [&R] (H000,((((((H002,H009),((H007,H011),H012)),H006),H008),H014),H013),H010,H001,(H003,H005));
+tree PAUP_44 = [&R] (H000,((((H002,H009),((((H007,H011),H012),H006),H008)),H014),H013),H010,H001,(H003,H005));
+tree PAUP_45 = [&R] (H000,(((((H002,H009),(((H007,H011),H012),H006)),H008),H014),H013),H010,H001,(H003,H005));
+tree PAUP_46 = [&R] (H000,(((H002,(((H007,H011),H012),(H008,H006)),H009),H014),H001),H010,H013,(H003,H005));
+tree PAUP_47 = [&R] (H000,((((H002,(((H007,H011),H012),(H008,H006)),H009),H014),H001),H013),H010,(H003,H005));
+tree PAUP_48 = [&R] (H000,(((((H002,(H007,H012,H011),H009),H006),H008),H014),H013),H010,H001,(H003,H005));
+tree PAUP_49 = [&R] (H000,((((H002,((H007,(H012,H011)),H009)),(H008,H006)),H014),H001),H010,H013,(H003,H005));
+tree PAUP_50 = [&R] (H000,(((((H002,((H008,H006),H014)),H009),H007),H012,H011),H013),H010,H001,(H003,H005));
+tree PAUP_51 = [&R] (H000,(((((H002,((H007,(H012,H011)),H009)),(H008,H006)),H014),H001),H013),H010,(H003,H005));
+tree PAUP_52 = [&R] (H000,(((((H002,((H008,H014),H006)),H009),H007),H012,H011),H013),H010,H001,(H003,H005));
+tree PAUP_53 = [&R] (H000,(((((H002,((H007,(H012,H011)),H009)),H006),H008),H014),H001),H010,H013,(H003,H005));
+tree PAUP_54 = [&R] (H000,(((((H002,H009),((H007,H011),H012),H006),H008),H014),H013),H010,H001,(H003,H005));
+tree PAUP_55 = [&R] (H000,((((((H002,((H007,(H012,H011)),H009)),H006),H008),H014),H013),H001),H010,(H003,H005));
+tree PAUP_56 = [&R] (H000,((((((H002,((H007,(H012,H011)),H009)),H006),H008),H014),H001),H013),H010,(H003,H005));
+tree PAUP_57 = [&R] (H000,(((((((H002,H009),H014),H008),H006),H012),H007,H011),H013),H010,H001,(H003,H005));
+tree PAUP_58 = [&R] (H000,(((H002,(H008,H014),H009,H006),H007,H012,H011),H013),H010,H001,(H003,H005));
+tree PAUP_59 = [&R] (H000,((((H002,(H007,H012,H011),H009),(H008,H006)),H014),H001),H010,H013,(H003,H005));
+tree PAUP_60 = [&R] (H000,((((H002,((H007,(H012,H011)),H009),H006),H008),H014),H001),H010,H013,(H003,H005));
+tree PAUP_61 = [&R] (H000,(((H002,(((H007,H011),H012),H008,H006),H009),H014),H001),H010,H013,(H003,H005));
+tree PAUP_62 = [&R] (H000,((((H002,(((H007,H011),H012),H008,H006),H009),H014),H001),H013),H010,(H003,H005));
+tree PAUP_63 = [&R] (H000,(((((H002,(H007,H012,H011),H009),(H008,H006)),H014),H001),H013),H010,(H003,H005));
+tree PAUP_64 = [&R] (H000,(((((H002,(H007,H012,H011),H009,H006),H008),H014),H001),H013),H010,(H003,H005));
+tree PAUP_65 = [&R] (H000,((((H002,(H007,H012,H011),H009,H006),H008),H014),H001),H010,H013,(H003,H005));
+tree PAUP_66 = [&R] (H000,((((H002,(((H007,H011),H012),H006),H009),H008),H014),H013),H010,H001,(H003,H005));
+tree PAUP_67 = [&R] (H000,(((((((H002,H009),((H007,H011),H012)),H006),H008),H014),H013),H001),H010,(H003,H005));
+tree PAUP_68 = [&R] (H000,(((((H002,(((H007,H011),H012),H006),H009),H008),H014),H013),H001),H010,(H003,H005));
+tree PAUP_69 = [&R] (H000,(((((H002,(H007,H012,H011),H009),H006),H008),H014),H001),H010,H013,(H003,H005));
+tree PAUP_70 = [&R] (H000,((((((H002,(H007,H012,H011),H009),H006),H008),H014),H001),H013),H010,(H003,H005));
+tree PAUP_71 = [&R] (H000,((((((H002,H009),(((H007,H011),H012),H006)),H008),H014),H013),H001),H010,(H003,H005));
+tree PAUP_72 = [&R] (H000,((((((H002,H009),((H007,H011),H012),H006),H008),H014),H013),H001),H010,(H003,H005));
+tree PAUP_73 = [&R] (H000,(((((H002,((H007,(H012,H011)),H009),H006),H008),H014),H013),H001),H010,(H003,H005));
+tree PAUP_74 = [&R] (H000,(((((H002,H009),((H008,H014),H006)),H012),H007,H011),H013),H010,H001,(H003,H005));
+tree PAUP_75 = [&R] (H000,((((((H002,H009),(H008,H014)),H006),H012),H007,H011),H013),H010,H001,(H003,H005));
+tree PAUP_76 = [&R] (H000,(((((H002,H009),(H008,H014),H006),H012),H007,H011),H013),H010,H001,(H003,H005));
+tree PAUP_77 = [&R] (H000,((((H002,H009),((((H007,H011),H012),H006),H008)),H014),H001),H010,H013,(H003,H005));
+tree PAUP_78 = [&R] (H000,(((((H002,H009),((((H007,H011),H012),H006),H008)),H014),H001),H013),H010,(H003,H005));
+tree PAUP_79 = [&R] (H000,(((((H002,((H007,(H012,H011)),H009),H006),H008),H014),H001),H013),H010,(H003,H005));
+tree PAUP_80 = [&R] (H000,(((((H002,(H008,H014),H006),H009),H007),H012,H011),H013),H010,H001,(H003,H005));
+tree PAUP_81 = [&R] (H000,(((((H002,(H008,H014),H009),H006),H012),H007,H011),H013),H010,H001,(H003,H005));
+tree PAUP_82 = [&R] (H000,((((((H002,H009),((H007,H011),H012)),H006),H008),H014),H001),H010,H013,(H003,H005));
+tree PAUP_83 = [&R] (H000,(((((((H002,H009),((H007,H011),H012)),H006),H008),H014),H001),H013),H010,(H003,H005));
+tree PAUP_84 = [&R] (H000,(((((H002,H009),(((H007,H011),H012),H006)),H008),H014),H001),H010,H013,(H003,H005));
+tree PAUP_85 = [&R] (H000,((((((H002,H009),(((H007,H011),H012),H006)),H008),H014),H001),H013),H010,(H003,H005));
+tree PAUP_86 = [&R] (H000,(((((H002,(((H007,H011),H012),H006),H009),H008),H014),H001),H013),H010,(H003,H005));
+tree PAUP_87 = [&R] (H000,(((((H002,H009),((H007,H011),H012),H006),H008),H014),H001),H010,H013,(H003,H005));
+tree PAUP_88 = [&R] (H000,((((((H002,H009),((H007,H011),H012),H006),H008),H014),H001),H013),H010,(H003,H005));
+tree PAUP_89 = [&R] (H000,((((H002,(((H007,H011),H012),H006),H009),H008),H014),H001),H010,H013,(H003,H005));
+End;
diff --git a/trunk/test/paup/outgr_present/localisation/caco.loc b/trunk/test/paup/outgr_present/localisation/caco.loc
new file mode 100644
index 0000000000000000000000000000000000000000..f79bc37e15c57ef83fc112bdf82c9f38e891d978
--- /dev/null
+++ b/trunk/test/paup/outgr_present/localisation/caco.loc
@@ -0,0 +1,27 @@
+Localisation method using S-character
+
+Results:
+site number 10 sens 2-->1 V_i = 3.32820117735137
+site number 11 sens 1-->2 V_i = 0.792593923901217
+site number 12 sens 1-->2 V_i = 0.792593923901217
+site number 4 sens 2-->1 V_i = -0.277350098112615
+site number 5 sens 2-->1 V_i = -0.277350098112615
+site number 3 sens 2-->1 V_i = -0.277350098112615
+site number 9 sens 2-->1 V_i = -0.277350098112615
+site number 8 sens 2-->1 V_i = -0.277350098112615
+site number 6 sens 2-->1 V_i = -0.392232270276368
+site number 8 sens 1-->2 V_i = -0.392232270276368
+site number 7 sens 2-->1 V_i = -0.392232270276368
+site number 4 sens 1-->2 V_i = -0.392232270276368
+site number 3 sens 1-->2 V_i = -0.392232270276368
+site number 10 sens 1-->2 V_i = -0.392232270276368
+site number 9 sens 1-->2 V_i = -0.392232270276368
+site number 5 sens 1-->2 V_i = -0.392232270276368
+site number 11 sens 2-->1 V_i = -0.480384461415261
+site number 2 sens 2-->1 V_i = -0.480384461415261
+site number 12 sens 2-->1 V_i = -0.480384461415261
+site number 2 sens 1-->2 V_i = -0.480384461415261
+site number 1 sens 2-->1 V_i = -0.480384461415261
+site number 1 sens 1-->2 V_i = -0.480384461415261
+site number 7 sens 1-->2 V_i = -0.554700196225229
+site number 6 sens 1-->2 V_i = -0.554700196225229
diff --git a/trunk/test/paup/outgr_present/localisation/caco.paup b/trunk/test/paup/outgr_present/localisation/caco.paup
new file mode 100644
index 0000000000000000000000000000000000000000..b0588947ac703ddf45a500aec7cd3cd890163899
--- /dev/null
+++ b/trunk/test/paup/outgr_present/localisation/caco.paup
@@ -0,0 +1,39 @@
+#Nexus
+Begin data;
+dimension ntax=14 nchar=12;
+format symbols="0123456789" missing=?;
+matrix
+H002 112221111122
+H010 222212222222
+H007 222221111121
+H008 112221112112
+H014 112221112222
+H013 222221122222
+H001 112222222222
+H003 221122222222
+H000 222222222222
+H005 221222222221
+H012 222221111112
+H009 112221111121
+H006 112221111112
+H011 222221111122
+;
+end;
+begin assumptions;
+[ancstates *anc vector = 2222222222221;]
+end;
+begin paup;
+set nowarnreset autoclose maxtrees = 2000 increase= no [- Auto AutoInc = 100] monitor = no taxlabels = full
+root=outgroup warnroot=no opt=deltran [- acctran];
+outgroup H000;
+hsearch;
+savetrees from=1 to=1000 file= test.tree root=yes format=altnexus;
+cleartrees nowarn=yes;
+gettrees rooted=yes file=test.tree;
+log file = test.res.log replace= yes [- no];
+describetrees all /plot=cladogram [- phylogram] brlens=yes
+rootmethod=outgroup apolist=yes;
+log stop;
+end;
+quit;
+[WARNING, this file is designed for bi-allelic data. If it is not the case, you may have to modify this input file, for example by specifying the ordered option in the typeset command in the assumption block]
diff --git a/trunk/test/paup/outgr_present/localisation/et_caco.paup b/trunk/test/paup/outgr_present/localisation/et_caco.paup
new file mode 100644
index 0000000000000000000000000000000000000000..d558191ba141ddc4d3bb657c57ebf714fe8702a2
--- /dev/null
+++ b/trunk/test/paup/outgr_present/localisation/et_caco.paup
@@ -0,0 +1,41 @@
+#Nexus
+Begin data;
+dimension ntax=14 nchar=13;
+format symbols="0123456789CG" missing=?;
+matrix
+H002 112221111122?
+H010 222212222222?
+H007 2222211111210
+H008 1122211121121
+H014 112221112222?
+H013 222221122222?
+H001 112222222222?
+H003 221122222222?
+H000 2222222222220
+H005 221222222221?
+H012 2222211111120
+H009 1122211111211
+H006 1122211111121
+H011 2222211111221
+;
+end;
+begin assumptions;
+[ancstates *anc vector = 2222222222221?;]
+end;
+begin paup;
+exclude 13;
+set nowarnreset autoclose maxtrees = 2000 increase= no [- Auto AutoInc = 100] monitor = no taxlabels = full
+root=outgroup warnroot=no opt=deltran [- acctran];
+outgroup H000;
+hsearch;
+savetrees from=1 to=1000 file= test.tree root=yes format=altnexus;
+cleartrees nowarn=yes;
+gettrees rooted=yes file=test.tree;
+log file = test.res.log replace= yes [- no];
+include 13;
+describetrees all /plot=cladogram [- phylogram] brlens=yes
+rootmethod=outgroup apolist=yes;
+log stop;
+end;
+quit;
+[WARNING, this file is designed for bi-allelic data. If it is not the case, you may have to modify this input file, for example by specifying the ordered option in the typeset command in the assumption block]
diff --git a/trunk/test/paup/outgr_present/localisation/nb_cas_control.txt b/trunk/test/paup/outgr_present/localisation/nb_cas_control.txt
new file mode 100644
index 0000000000000000000000000000000000000000..96b01484da94e596349ac0f87a9439e609ea02a0
--- /dev/null
+++ b/trunk/test/paup/outgr_present/localisation/nb_cas_control.txt
@@ -0,0 +1,14 @@
+H002 m008 c006
+H010 m007 c005
+H007 m007 c013
+H008 m009 c002
+H014 m004 c002
+H013 m002 c004
+H001 m011 c009
+H003 m005 c006
+H000 m098 c126
+H005 m007 c007
+H012 m001 c004
+H009 m008 c002
+H006 m028 c013
+H011 m005 c001
diff --git a/trunk/test/paup/outgr_present/localisation/run-prog b/trunk/test/paup/outgr_present/localisation/run-prog
new file mode 100755
index 0000000000000000000000000000000000000000..b87e9c713d98224eaf1a829d2112761214fc86cc
--- /dev/null
+++ b/trunk/test/paup/outgr_present/localisation/run-prog
@@ -0,0 +1,14 @@
+#!/bin/sh -x
+
+# To optain the paup input file containing the S character
+../../../../altree-add-S -i caco.paup -j \
+nb_cas_control.txt -o et_caco.paup -e 1 -t SNP -p 0.5
+
+# To run paup
+paup et_caco.paup
+
+# To perform the localisation test on the 89 equiparsimonious trees
+../../../../altree -i test.res.log \
+-j nb_cas_control.txt -t SNP -p paup --tree-to-analyse 89 \
+--s-site-number 13 --s-site-characters "0->1" \
+--co-evo double -l -o caco.loc
diff --git a/trunk/test/paup/outgr_present/localisation/test.res.log b/trunk/test/paup/outgr_present/localisation/test.res.log
new file mode 100644
index 0000000000000000000000000000000000000000..4bd1763eeb9634ef09cfab2db8d035b638096304
--- /dev/null
+++ b/trunk/test/paup/outgr_present/localisation/test.res.log
@@ -0,0 +1,8718 @@
+
+P A U P *
+Portable version 4.0b10 for Unix
+Tue Jan 10 21:29:10 2006
+
+ -----------------------------NOTICE-----------------------------
+ This is a beta-test version. Please report any crashes,
+ apparent calculation errors, or other anomalous results.
+ There are no restrictions on publication of results obtained
+ with this version, but you should check the WWW site
+ frequently for bug announcements and/or updated versions.
+ See the README file on the distribution media for details.
+ ----------------------------------------------------------------
+
+Character-exclusion status changed:
+ 1 character re-included
+ Total number of characters now excluded = 0
+ Number of included characters = 13
+
+Tree description:
+
+ Optimality criterion = parsimony
+ Character-status summary:
+ Of 13 total characters:
+ All characters are of type 'unord'
+ All characters have equal weight
+ 2 characters are parsimony-uninformative
+ Number of parsimony-informative characters = 11
+ Character-state optimization: Delayed transformation (DELTRAN)
+ AncStates = "standard"
+
+Tree number 1:
+
+Branch lengths and linkages for tree #1
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 21 root 0 0 0
+ 19 21 2 2 3
+ 18 19 3 3 4
+ 17 18 2 2 3
+H002 (1) 17 0 0 0
+ 15 17 2 2 3
+H007 (3) 15 1 1 2
+H012 (11) 15 1 1 2
+H011 (14) 15 1 0 1
+ 16 17 2 1 2
+H008 (4) 16 1 1 1
+H006 (13) 16 0 0 0
+H009 (12) 17 2 1 2
+H014 (5) 18 0 0 0
+H013 (6) 19 0 0 0
+H010 (2) 21 1 1 1
+H001 (7) 21 2 2 2
+ 20 21 1 1 1
+H003 (8) 20 1 1 1
+H005 (10) 20 1 1 1
+H000 (9)* 21 0 0 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+ /------------------------ H002
+ |
+ | /------------ H007
+ | |
+ +----------15------------ H012
+ | |
+ /----------17 \------------ H011
+ | |
+ | | /------------ H008
+ | +----------16
+ /-----------18 | \------------ H006
+ | | |
+ | | \------------------------ H009
+ /----------19 |
+ | | \------------------------------------ H014
+ | |
+ | \------------------------------------------------- H013
+ |
+ +------------------------------------------------------------- H010
+ |
+-----------21------------------------------------------------------------- H001
+ |
+ | /------------ H003
+ +-----------------------------------------------20
+ | \------------ H005
+ |
+ \------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_19 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_19 --> node_18 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_18 --> node_17 9 1 0.500 2 ==> 1
+ 10 1 1.000 2 ==> 1
+ node_17 --> node_15 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ node_15 --> H012 11 1 0.500 2 ==> 1
+ node_15 --> H011 13 1 0.333 0 --> 1
+ node_17 --> node_16 11 1 0.500 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_16 --> H008 9 1 0.500 1 ==> 2
+ node_17 --> H009 12 1 0.333 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_21 --> H010 5 1 1.000 2 ==> 1
+ node_21 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_21 --> node_20 3 1 1.000 2 ==> 1
+ node_20 --> H003 4 1 1.000 2 ==> 1
+ node_20 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 2:
+
+Branch lengths and linkages for tree #2
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 22 root 0 0 0
+ 20 22 2 2 2
+ 19 20 1 1 3
+ 18 19 2 2 2
+ 16 18 3 1 3
+H002 (1) 16 0 0 0
+ 15 16 1 1 1
+H008 (4) 15 1 1 1
+H006 (13) 15 0 0 0
+H009 (12) 16 1 1 1
+ 17 18 0 0 2
+H007 (3) 17 1 1 1
+H012 (11) 17 1 1 1
+H011 (14) 17 1 1 1
+H014 (5) 19 2 0 2
+H013 (6) 20 0 0 0
+H010 (2) 22 1 1 1
+H001 (7) 22 2 2 2
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (10) 21 1 1 1
+H000 (9)* 22 0 0 0
+-------------------------------------------------------------------------
+Sum 22
+
+Tree length = 22
+Consistency index (CI) = 0.5909
+Homoplasy index (HI) = 0.4091
+CI excluding uninformative characters = 0.5500
+HI excluding uninformative characters = 0.4500
+Retention index (RI) = 0.7805
+Rescaled consistency index (RC) = 0.4612
+
+ /--------------------- H002
+ |
+ | /---------- H008
+ /--------16---------15
+ | | \---------- H006
+ | |
+ | \--------------------- H009
+ /---------18
+ | | /---------- H007
+ | | |
+ | \-------------------17---------- H012
+ /--------19 |
+ | | \---------- H011
+ | |
+ /---------20 \------------------------------------------ H014
+ | |
+ | \---------------------------------------------------- H013
+ |
+ +--------------------------------------------------------------- H010
+ |
+---------22--------------------------------------------------------------- H001
+ |
+ | /---------- H003
+ +---------------------------------------------------21
+ | \---------- H005
+ |
+ \--------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_20 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_20 --> node_19 8 1 1.000 2 ==> 1
+ node_19 --> node_18 9 1 0.500 2 ==> 1
+ 10 1 1.000 2 ==> 1
+ node_18 --> node_16 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ 13 1 0.500 0 ==> 1
+ node_16 --> node_15 11 1 0.500 2 ==> 1
+ node_15 --> H008 9 1 0.500 1 ==> 2
+ node_16 --> H009 12 1 0.333 2 ==> 1
+ node_17 --> H007 12 1 0.333 2 ==> 1
+ node_17 --> H012 11 1 0.500 2 ==> 1
+ node_17 --> H011 13 1 0.500 0 ==> 1
+ node_19 --> H014 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ node_22 --> H010 5 1 1.000 2 ==> 1
+ node_22 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 3:
+
+Branch lengths and linkages for tree #3
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 22 root 0 0 0
+ 20 22 0 0 3
+ 19 20 2 2 3
+ 18 19 3 1 4
+ 17 18 2 2 3
+H002 (1) 17 0 0 0
+ 15 17 2 2 3
+H007 (3) 15 1 1 2
+H012 (11) 15 1 1 2
+H011 (14) 15 1 0 1
+ 16 17 2 1 2
+H008 (4) 16 1 1 1
+H006 (13) 16 0 0 0
+H009 (12) 17 2 1 2
+H014 (5) 18 0 0 0
+H013 (6) 19 0 0 2
+H001 (7) 20 2 0 2
+H010 (2) 22 1 1 1
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (10) 21 1 1 1
+H000 (9)* 22 0 0 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+ /--------------------- H002
+ |
+ | /---------- H007
+ | |
+ +---------15---------- H012
+ | |
+ /--------17 \---------- H011
+ | |
+ | | /---------- H008
+ | +---------16
+ /---------18 | \---------- H006
+ | | |
+ | | \--------------------- H009
+ /--------19 |
+ | | \------------------------------- H014
+ | |
+ /---------20 \------------------------------------------ H013
+ | |
+ | \---------------------------------------------------- H001
+ |
+ +--------------------------------------------------------------- H010
+---------22
+ | /---------- H003
+ +---------------------------------------------------21
+ | \---------- H005
+ |
+ \--------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_20 --> node_19 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_19 --> node_18 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_18 --> node_17 9 1 0.500 2 ==> 1
+ 10 1 1.000 2 ==> 1
+ node_17 --> node_15 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ node_15 --> H012 11 1 0.500 2 ==> 1
+ node_15 --> H011 13 1 0.333 0 --> 1
+ node_17 --> node_16 11 1 0.500 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_16 --> H008 9 1 0.500 1 ==> 2
+ node_17 --> H009 12 1 0.333 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_20 --> H001 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ node_22 --> H010 5 1 1.000 2 ==> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 4:
+
+Branch lengths and linkages for tree #4
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 21 23 2 2 3
+ 20 21 3 3 4
+ 19 20 2 2 3
+H002 (1) 19 0 0 0
+ 17 19 0 0 1
+ 16 17 2 2 3
+H007 (3) 16 1 0 2
+ 15 16 0 0 1
+H012 (11) 15 1 1 2
+H011 (14) 15 1 0 1
+H009 (12) 17 2 0 2
+ 18 19 2 1 2
+H008 (4) 18 1 1 1
+H006 (13) 18 0 0 0
+H014 (5) 20 0 0 0
+H013 (6) 21 0 0 0
+H010 (2) 23 1 1 1
+H001 (7) 23 2 2 2
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (10) 22 1 1 1
+H000 (9)* 23 0 0 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+ /------------------------------------- H002
+ |
+ | /------------------ H007
+ | |
+ | /-------16 /--------- H012
+ | | \-------15
+ /-------19--------17 \--------- H011
+ | | |
+ | | \--------------------------- H009
+ | |
+ /-------20 | /--------- H008
+ | | \--------------------------18
+ | | \--------- H006
+ /-------21 |
+ | | \---------------------------------------------- H014
+ | |
+ | \------------------------------------------------------- H013
+ |
+ +---------------------------------------------------------------- H010
+ |
+--------23---------------------------------------------------------------- H001
+ |
+ | /--------- H003
+ +-----------------------------------------------------22
+ | \--------- H005
+ |
+ \---------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_21 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_21 --> node_20 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_20 --> node_19 9 1 0.500 2 ==> 1
+ 10 1 1.000 2 ==> 1
+ node_17 --> node_16 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 --> 1
+ node_15 --> H012 11 1 0.500 2 ==> 1
+ node_15 --> H011 13 1 0.333 0 --> 1
+ node_17 --> H009 12 1 0.333 2 --> 1
+ 13 1 0.333 0 --> 1
+ node_19 --> node_18 11 1 0.500 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_18 --> H008 9 1 0.500 1 ==> 2
+ node_23 --> H010 5 1 1.000 2 ==> 1
+ node_23 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 5:
+
+Branch lengths and linkages for tree #5
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 22 root 0 0 0
+ 20 22 2 2 2
+ 19 20 1 1 3
+ 17 19 2 2 3
+ 16 17 3 0 3
+H002 (1) 16 0 0 0
+ 15 16 1 1 1
+H008 (4) 15 1 1 1
+H006 (13) 15 0 0 0
+H009 (12) 16 1 1 1
+H014 (5) 17 0 0 2
+ 18 19 2 0 2
+H007 (3) 18 1 1 1
+H012 (11) 18 1 1 1
+H011 (14) 18 1 1 1
+H013 (6) 20 0 0 0
+H010 (2) 22 1 1 1
+H001 (7) 22 2 2 2
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (10) 21 1 1 1
+H000 (9)* 22 0 0 0
+-------------------------------------------------------------------------
+Sum 22
+
+Tree length = 22
+Consistency index (CI) = 0.5909
+Homoplasy index (HI) = 0.4091
+CI excluding uninformative characters = 0.5500
+HI excluding uninformative characters = 0.4500
+Retention index (RI) = 0.7805
+Rescaled consistency index (RC) = 0.4612
+
+ /--------------------- H002
+ |
+ | /---------- H008
+ /--------16---------15
+ | | \---------- H006
+ | |
+ /---------17 \--------------------- H009
+ | |
+ | \------------------------------- H014
+ /--------19
+ | | /---------- H007
+ | | |
+ | \------------------------------18---------- H012
+ /---------20 |
+ | | \---------- H011
+ | |
+ | \---------------------------------------------------- H013
+ |
+ +--------------------------------------------------------------- H010
+ |
+---------22--------------------------------------------------------------- H001
+ |
+ | /---------- H003
+ +---------------------------------------------------21
+ | \---------- H005
+ |
+ \--------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_20 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_20 --> node_19 8 1 1.000 2 ==> 1
+ node_19 --> node_17 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_17 --> node_16 9 1 0.333 2 --> 1
+ 10 1 0.500 2 --> 1
+ 13 1 0.500 0 --> 1
+ node_16 --> node_15 11 1 0.500 2 ==> 1
+ node_15 --> H008 9 1 0.333 1 ==> 2
+ node_16 --> H009 12 1 0.333 2 ==> 1
+ node_19 --> node_18 9 1 0.333 2 --> 1
+ 10 1 0.500 2 --> 1
+ node_18 --> H007 12 1 0.333 2 ==> 1
+ node_18 --> H012 11 1 0.500 2 ==> 1
+ node_18 --> H011 13 1 0.500 0 ==> 1
+ node_22 --> H010 5 1 1.000 2 ==> 1
+ node_22 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 6:
+
+Branch lengths and linkages for tree #6
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 21 23 2 2 3
+ 20 21 3 3 4
+ 19 20 2 2 3
+H002 (1) 19 0 0 0
+ 18 19 0 0 1
+ 16 18 2 2 3
+ 15 16 0 0 1
+H007 (3) 15 1 1 2
+H011 (14) 15 1 0 1
+H012 (11) 16 1 0 2
+ 17 18 2 0 2
+H008 (4) 17 1 1 1
+H006 (13) 17 0 0 0
+H009 (12) 19 2 1 2
+H014 (5) 20 0 0 0
+H013 (6) 21 0 0 0
+H010 (2) 23 1 1 1
+H001 (7) 23 2 2 2
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (10) 22 1 1 1
+H000 (9)* 23 0 0 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+ /------------------------------------- H002
+ |
+ | /--------- H007
+ | /-------15
+ | | \--------- H011
+ | /-------16
+ /-------19 | \------------------ H012
+ | +--------18
+ | | | /--------- H008
+ | | \----------------17
+ /-------20 | \--------- H006
+ | | |
+ | | \------------------------------------- H009
+ /-------21 |
+ | | \---------------------------------------------- H014
+ | |
+ | \------------------------------------------------------- H013
+ |
+ +---------------------------------------------------------------- H010
+ |
+--------23---------------------------------------------------------------- H001
+ |
+ | /--------- H003
+ +-----------------------------------------------------22
+ | \--------- H005
+ |
+ \---------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_21 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_21 --> node_20 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_20 --> node_19 9 1 0.500 2 ==> 1
+ 10 1 1.000 2 ==> 1
+ node_18 --> node_16 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ node_15 --> H011 13 1 0.333 0 --> 1
+ node_16 --> H012 11 1 0.500 2 --> 1
+ node_18 --> node_17 11 1 0.500 2 --> 1
+ 13 1 0.333 0 --> 1
+ node_17 --> H008 9 1 0.500 1 ==> 2
+ node_19 --> H009 12 1 0.333 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+ node_23 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 7:
+
+Branch lengths and linkages for tree #7
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 22 root 0 0 0
+ 20 22 2 2 3
+ 19 20 3 3 4
+ 18 19 3 2 3
+H002 (1) 18 0 0 0
+ 17 18 1 1 1
+ 16 17 2 2 3
+ 15 16 1 1 1
+H007 (3) 15 2 1 2
+H011 (14) 15 0 0 1
+H012 (11) 16 1 0 1
+H008 (4) 17 1 1 1
+H006 (13) 17 0 0 0
+H009 (12) 18 1 1 1
+H014 (5) 19 0 0 0
+H013 (6) 20 0 0 0
+H010 (2) 22 1 1 1
+H001 (7) 22 2 2 2
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (10) 21 1 1 1
+H000 (9)* 22 0 0 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+ /------------------------------------- H002
+ |
+ | /--------- H007
+ | /-------15
+ | | \--------- H011
+ | /-------16
+ /-------18 | \------------------ H012
+ | | |
+ | +--------17--------------------------- H008
+ | | |
+ /-------19 | \--------------------------- H006
+ | | |
+ | | \------------------------------------- H009
+ /-------20 |
+ | | \---------------------------------------------- H014
+ | |
+ | \------------------------------------------------------- H013
+ |
+ +---------------------------------------------------------------- H010
+ |
+--------22---------------------------------------------------------------- H001
+ |
+ | /--------- H003
+ +-----------------------------------------------------21
+ | \--------- H005
+ |
+ \---------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_20 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_20 --> node_19 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_19 --> node_18 9 1 0.500 2 ==> 1
+ 10 1 1.000 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_18 --> node_17 11 1 0.500 2 ==> 1
+ node_17 --> node_16 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_16 --> node_15 11 1 0.500 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_16 --> H012 13 1 0.333 1 --> 0
+ node_17 --> H008 9 1 0.500 1 ==> 2
+ node_18 --> H009 12 1 0.333 2 ==> 1
+ node_22 --> H010 5 1 1.000 2 ==> 1
+ node_22 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 8:
+
+Branch lengths and linkages for tree #8
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 24 root 0 0 0
+ 22 24 2 2 3
+ 21 22 3 3 4
+ 20 21 1 1 3
+ 18 20 1 0 1
+H002 (1) 18 0 0 0
+ 17 18 0 0 1
+ 16 17 2 2 3
+H007 (3) 16 1 0 2
+ 15 16 0 0 1
+H012 (11) 15 1 1 2
+H011 (14) 15 1 0 1
+H009 (12) 17 2 0 2
+ 19 20 2 1 2
+H008 (4) 19 0 0 1
+H006 (13) 19 1 0 1
+H014 (5) 21 0 0 0
+H013 (6) 22 0 0 0
+H010 (2) 24 1 1 1
+H001 (7) 24 2 2 2
+ 23 24 1 1 1
+H003 (8) 23 1 1 1
+H005 (10) 23 1 1 1
+H000 (9)* 24 0 0 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+ /-------------------------------- H002
+ |
+ | /---------------- H007
+ /-------18 |
+ | | /------16 /-------- H012
+ | | | \------15
+ | \------17 \-------- H011
+ /------20 |
+ | | \------------------------ H009
+ | |
+ | | /-------- H008
+ /------21 \-------------------------------19
+ | | \-------- H006
+ | |
+ /------22 \------------------------------------------------- H014
+ | |
+ | \--------------------------------------------------------- H013
+ |
+ +----------------------------------------------------------------- H010
+ |
+-------24----------------------------------------------------------------- H001
+ |
+ | /-------- H003
+ +-------------------------------------------------------23
+ | \-------- H005
+ |
+ \----------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_24 --> node_22 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_22 --> node_21 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_21 --> node_20 10 1 1.000 2 ==> 1
+ node_20 --> node_18 9 1 0.500 2 --> 1
+ node_17 --> node_16 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 --> 1
+ node_15 --> H012 11 1 0.500 2 ==> 1
+ node_15 --> H011 13 1 0.333 0 --> 1
+ node_17 --> H009 12 1 0.333 2 --> 1
+ 13 1 0.333 0 --> 1
+ node_20 --> node_19 11 1 0.500 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_19 --> H006 9 1 0.500 2 --> 1
+ node_24 --> H010 5 1 1.000 2 ==> 1
+ node_24 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_24 --> node_23 3 1 1.000 2 ==> 1
+ node_23 --> H003 4 1 1.000 2 ==> 1
+ node_23 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 9:
+
+Branch lengths and linkages for tree #9
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 21 23 2 2 2
+ 20 21 1 1 1
+ 19 20 2 2 2
+ 18 19 0 0 1
+ 17 18 3 3 3
+ 16 17 0 0 1
+H002 (1) 16 0 0 0
+ 15 16 1 1 1
+H008 (4) 15 1 1 1
+H006 (13) 15 0 0 0
+H009 (12) 17 1 0 1
+H007 (3) 18 1 0 1
+H012 (11) 19 1 1 1
+H011 (14) 19 1 1 1
+H014 (5) 20 2 2 2
+H013 (6) 21 0 0 0
+H010 (2) 23 1 1 1
+H001 (7) 23 2 2 2
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (10) 22 1 1 1
+H000 (9)* 23 0 0 0
+-------------------------------------------------------------------------
+Sum 22
+
+Tree length = 22
+Consistency index (CI) = 0.5909
+Homoplasy index (HI) = 0.4091
+CI excluding uninformative characters = 0.5500
+HI excluding uninformative characters = 0.4500
+Retention index (RI) = 0.7805
+Rescaled consistency index (RC) = 0.4612
+
+ /---------------- H002
+ |
+ /------16 /-------- H008
+ | \------15
+ /------17 \-------- H006
+ | |
+ /-------18 \------------------------ H009
+ | |
+ | \-------------------------------- H007
+ /------19
+ | +----------------------------------------- H012
+ | |
+ /------20 \----------------------------------------- H011
+ | |
+ /------21 \------------------------------------------------- H014
+ | |
+ | \--------------------------------------------------------- H013
+ |
+ +----------------------------------------------------------------- H010
+ |
+-------23----------------------------------------------------------------- H001
+ |
+ | /-------- H003
+ +-------------------------------------------------------22
+ | \-------- H005
+ |
+ \----------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_21 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_21 --> node_20 8 1 1.000 2 ==> 1
+ node_20 --> node_19 9 1 0.500 2 ==> 1
+ 10 1 1.000 2 ==> 1
+ node_18 --> node_17 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ 13 1 0.500 0 ==> 1
+ node_16 --> node_15 11 1 0.500 2 ==> 1
+ node_15 --> H008 9 1 0.500 1 ==> 2
+ node_17 --> H009 12 1 0.333 2 --> 1
+ node_18 --> H007 12 1 0.333 2 --> 1
+ node_19 --> H012 11 1 0.500 2 ==> 1
+ node_19 --> H011 13 1 0.500 0 ==> 1
+ node_20 --> H014 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+ node_23 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 10:
+
+Branch lengths and linkages for tree #10
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 21 root 0 0 0
+ 19 21 2 2 2
+ 18 19 1 1 1
+ 17 18 2 2 2
+ 16 17 3 3 3
+H002 (1) 16 0 0 0
+ 15 16 1 1 1
+H008 (4) 15 1 1 1
+H006 (13) 15 0 0 0
+H009 (12) 16 1 1 1
+H007 (3) 17 1 1 1
+H012 (11) 17 1 1 1
+H011 (14) 17 1 1 1
+H014 (5) 18 2 2 2
+H013 (6) 19 0 0 0
+H010 (2) 21 1 1 1
+H001 (7) 21 2 2 2
+ 20 21 1 1 1
+H003 (8) 20 1 1 1
+H005 (10) 20 1 1 1
+H000 (9)* 21 0 0 0
+-------------------------------------------------------------------------
+Sum 22
+
+Tree length = 22
+Consistency index (CI) = 0.5909
+Homoplasy index (HI) = 0.4091
+CI excluding uninformative characters = 0.5500
+HI excluding uninformative characters = 0.4500
+Retention index (RI) = 0.7805
+Rescaled consistency index (RC) = 0.4612
+
+ /--------------------- H002
+ |
+ | /---------- H008
+ /--------16---------15
+ | | \---------- H006
+ | |
+ | \--------------------- H009
+ |
+ /---------17------------------------------- H007
+ | |
+ | +------------------------------- H012
+ /--------18 |
+ | | \------------------------------- H011
+ | |
+ /---------19 \------------------------------------------ H014
+ | |
+ | \---------------------------------------------------- H013
+ |
+ +--------------------------------------------------------------- H010
+ |
+---------21--------------------------------------------------------------- H001
+ |
+ | /---------- H003
+ +---------------------------------------------------20
+ | \---------- H005
+ |
+ \--------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_19 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_19 --> node_18 8 1 1.000 2 ==> 1
+ node_18 --> node_17 9 1 0.500 2 ==> 1
+ 10 1 1.000 2 ==> 1
+ node_17 --> node_16 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ 13 1 0.500 0 ==> 1
+ node_16 --> node_15 11 1 0.500 2 ==> 1
+ node_15 --> H008 9 1 0.500 1 ==> 2
+ node_16 --> H009 12 1 0.333 2 ==> 1
+ node_17 --> H007 12 1 0.333 2 ==> 1
+ node_17 --> H012 11 1 0.500 2 ==> 1
+ node_17 --> H011 13 1 0.500 0 ==> 1
+ node_18 --> H014 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_21 --> H010 5 1 1.000 2 ==> 1
+ node_21 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_21 --> node_20 3 1 1.000 2 ==> 1
+ node_20 --> H003 4 1 1.000 2 ==> 1
+ node_20 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 11:
+
+Branch lengths and linkages for tree #11
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 24 root 0 0 0
+ 22 24 2 2 3
+ 21 22 3 3 4
+ 20 21 2 1 3
+ 19 20 1 1 1
+ 18 19 0 0 1
+H002 (1) 18 0 0 0
+ 17 18 0 0 1
+ 16 17 2 2 3
+H007 (3) 16 2 0 2
+ 15 16 0 0 1
+H012 (11) 15 2 1 2
+H011 (14) 15 0 0 1
+H009 (12) 17 1 0 1
+H006 (13) 19 1 0 1
+H008 (4) 20 1 0 1
+H014 (5) 21 0 0 0
+H013 (6) 22 0 0 0
+H010 (2) 24 1 1 1
+H001 (7) 24 2 2 2
+ 23 24 1 1 1
+H003 (8) 23 1 1 1
+H005 (10) 23 1 1 1
+H000 (9)* 24 0 0 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+ /----------------------------- H002
+ |
+ | /--------------- H007
+ /-----18 |
+ | | /-----16 /------- H012
+ | | | \------15
+ | \-----17 \------- H011
+ /------19 |
+ | | \---------------------- H009
+ | |
+ /-----20 \------------------------------------ H006
+ | |
+ /-----21 \-------------------------------------------- H008
+ | |
+ /------22 \--------------------------------------------------- H014
+ | |
+ | \---------------------------------------------------------- H013
+ |
+ +------------------------------------------------------------------ H010
+ |
+------24------------------------------------------------------------------ H001
+ |
+ | /------- H003
+ +---------------------------------------------------------23
+ | \------- H005
+ |
+ \------------------------------------------------------------------ H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_24 --> node_22 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_22 --> node_21 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_21 --> node_20 10 1 1.000 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_20 --> node_19 9 1 1.000 2 ==> 1
+ node_17 --> node_16 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 --> 1
+ 13 1 0.333 1 --> 0
+ node_15 --> H012 11 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_17 --> H009 12 1 0.333 2 --> 1
+ node_19 --> H006 11 1 0.333 2 --> 1
+ node_20 --> H008 11 1 0.333 2 --> 1
+ node_24 --> H010 5 1 1.000 2 ==> 1
+ node_24 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_24 --> node_23 3 1 1.000 2 ==> 1
+ node_23 --> H003 4 1 1.000 2 ==> 1
+ node_23 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 12:
+
+Branch lengths and linkages for tree #12
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 20 root 0 0 0
+ 18 20 2 2 2
+ 17 18 3 3 3
+ 16 17 3 3 3
+H002 (1) 16 0 0 0
+ 15 16 1 1 1
+H008 (4) 15 1 1 1
+H006 (13) 15 0 0 0
+H014 (5) 16 2 2 2
+H009 (12) 16 1 1 1
+H007 (3) 17 1 1 1
+H012 (11) 17 1 1 1
+H011 (14) 17 1 1 1
+H013 (6) 18 0 0 0
+H010 (2) 20 1 1 1
+H001 (7) 20 2 2 2
+ 19 20 1 1 1
+H003 (8) 19 1 1 1
+H005 (10) 19 1 1 1
+H000 (9)* 20 0 0 0
+-------------------------------------------------------------------------
+Sum 22
+
+Tree length = 22
+Consistency index (CI) = 0.5909
+Homoplasy index (HI) = 0.4091
+CI excluding uninformative characters = 0.5500
+HI excluding uninformative characters = 0.4500
+Retention index (RI) = 0.7805
+Rescaled consistency index (RC) = 0.4612
+
+ /------------------------ H002
+ |
+ | /------------ H008
+ +----------15
+ /----------16 \------------ H006
+ | |
+ | +------------------------ H014
+ | |
+ | \------------------------ H009
+ /-----------17
+ | +------------------------------------ H007
+ | |
+ | +------------------------------------ H012
+ /----------18 |
+ | | \------------------------------------ H011
+ | |
+ | \------------------------------------------------- H013
+ |
+ +------------------------------------------------------------- H010
+ |
+-----------20------------------------------------------------------------- H001
+ |
+ | /------------ H003
+ +-----------------------------------------------19
+ | \------------ H005
+ |
+ \------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_20 --> node_18 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_18 --> node_17 8 1 1.000 2 ==> 1
+ 9 1 0.333 2 ==> 1
+ 10 1 0.500 2 ==> 1
+ node_17 --> node_16 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ 13 1 0.500 0 ==> 1
+ node_16 --> node_15 11 1 0.500 2 ==> 1
+ node_15 --> H008 9 1 0.333 1 ==> 2
+ node_16 --> H014 9 1 0.333 1 ==> 2
+ 10 1 0.500 1 ==> 2
+ node_16 --> H009 12 1 0.333 2 ==> 1
+ node_17 --> H007 12 1 0.333 2 ==> 1
+ node_17 --> H012 11 1 0.500 2 ==> 1
+ node_17 --> H011 13 1 0.500 0 ==> 1
+ node_20 --> H010 5 1 1.000 2 ==> 1
+ node_20 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_20 --> node_19 3 1 1.000 2 ==> 1
+ node_19 --> H003 4 1 1.000 2 ==> 1
+ node_19 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 13:
+
+Branch lengths and linkages for tree #13
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 21 root 0 0 0
+ 19 21 2 2 3
+ 18 19 3 3 4
+ 17 18 2 2 3
+H002 (1) 17 0 0 0
+ 15 17 2 2 3
+H007 (3) 15 1 1 2
+H012 (11) 15 1 1 2
+H011 (14) 15 1 0 1
+ 16 17 2 1 2
+H008 (4) 16 1 1 1
+H006 (13) 16 0 0 0
+H009 (12) 17 2 1 2
+H014 (5) 18 0 0 0
+H001 (7) 19 0 0 0
+H010 (2) 21 1 1 1
+H013 (6) 21 2 2 2
+ 20 21 1 1 1
+H003 (8) 20 1 1 1
+H005 (10) 20 1 1 1
+H000 (9)* 21 0 0 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+ /------------------------ H002
+ |
+ | /------------ H007
+ | |
+ +----------15------------ H012
+ | |
+ /----------17 \------------ H011
+ | |
+ | | /------------ H008
+ | +----------16
+ /-----------18 | \------------ H006
+ | | |
+ | | \------------------------ H009
+ /----------19 |
+ | | \------------------------------------ H014
+ | |
+ | \------------------------------------------------- H001
+ |
+ +------------------------------------------------------------- H010
+ |
+-----------21------------------------------------------------------------- H013
+ |
+ | /------------ H003
+ +-----------------------------------------------20
+ | \------------ H005
+ |
+ \------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_19 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_19 --> node_18 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_18 --> node_17 9 1 0.500 2 ==> 1
+ 10 1 1.000 2 ==> 1
+ node_17 --> node_15 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ node_15 --> H012 11 1 0.500 2 ==> 1
+ node_15 --> H011 13 1 0.333 0 --> 1
+ node_17 --> node_16 11 1 0.500 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_16 --> H008 9 1 0.500 1 ==> 2
+ node_17 --> H009 12 1 0.333 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_21 --> H010 5 1 1.000 2 ==> 1
+ node_21 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ node_21 --> node_20 3 1 1.000 2 ==> 1
+ node_20 --> H003 4 1 1.000 2 ==> 1
+ node_20 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 14:
+
+Branch lengths and linkages for tree #14
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 22 root 0 0 0
+ 20 22 0 0 3
+ 19 20 2 2 3
+ 18 19 3 1 4
+ 17 18 2 2 3
+H002 (1) 17 0 0 0
+ 15 17 2 2 3
+H007 (3) 15 1 1 2
+H012 (11) 15 1 1 2
+H011 (14) 15 1 0 1
+ 16 17 2 1 2
+H008 (4) 16 1 1 1
+H006 (13) 16 0 0 0
+H009 (12) 17 2 1 2
+H014 (5) 18 0 0 0
+H001 (7) 19 0 0 2
+H013 (6) 20 2 0 2
+H010 (2) 22 1 1 1
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (10) 21 1 1 1
+H000 (9)* 22 0 0 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+ /--------------------- H002
+ |
+ | /---------- H007
+ | |
+ +---------15---------- H012
+ | |
+ /--------17 \---------- H011
+ | |
+ | | /---------- H008
+ | +---------16
+ /---------18 | \---------- H006
+ | | |
+ | | \--------------------- H009
+ /--------19 |
+ | | \------------------------------- H014
+ | |
+ /---------20 \------------------------------------------ H001
+ | |
+ | \---------------------------------------------------- H013
+ |
+ +--------------------------------------------------------------- H010
+---------22
+ | /---------- H003
+ +---------------------------------------------------21
+ | \---------- H005
+ |
+ \--------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_20 --> node_19 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_19 --> node_18 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_18 --> node_17 9 1 0.500 2 ==> 1
+ 10 1 1.000 2 ==> 1
+ node_17 --> node_15 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ node_15 --> H012 11 1 0.500 2 ==> 1
+ node_15 --> H011 13 1 0.333 0 --> 1
+ node_17 --> node_16 11 1 0.500 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_16 --> H008 9 1 0.500 1 ==> 2
+ node_17 --> H009 12 1 0.333 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_20 --> H013 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ node_22 --> H010 5 1 1.000 2 ==> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 15:
+
+Branch lengths and linkages for tree #15
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 22 root 0 0 0
+ 20 22 2 2 3
+ 19 20 3 3 4
+ 18 19 1 1 3
+ 16 18 1 0 1
+H002 (1) 16 0 0 0
+ 15 16 2 2 3
+H007 (3) 15 1 1 2
+H012 (11) 15 1 1 2
+H011 (14) 15 1 0 1
+H009 (12) 16 2 1 2
+ 17 18 2 1 2
+H008 (4) 17 0 0 1
+H006 (13) 17 1 0 1
+H014 (5) 19 0 0 0
+H013 (6) 20 0 0 0
+H010 (2) 22 1 1 1
+H001 (7) 22 2 2 2
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (10) 21 1 1 1
+H000 (9)* 22 0 0 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+ /--------------------- H002
+ |
+ | /---------- H007
+ | |
+ /--------16---------15---------- H012
+ | | |
+ | | \---------- H011
+ | |
+ /---------18 \--------------------- H009
+ | |
+ | | /---------- H008
+ /--------19 \-------------------17
+ | | \---------- H006
+ | |
+ /---------20 \------------------------------------------ H014
+ | |
+ | \---------------------------------------------------- H013
+ |
+ +--------------------------------------------------------------- H010
+ |
+---------22--------------------------------------------------------------- H001
+ |
+ | /---------- H003
+ +---------------------------------------------------21
+ | \---------- H005
+ |
+ \--------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_20 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_20 --> node_19 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_19 --> node_18 10 1 1.000 2 ==> 1
+ node_18 --> node_16 9 1 0.500 2 --> 1
+ node_16 --> node_15 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ node_15 --> H012 11 1 0.500 2 ==> 1
+ node_15 --> H011 13 1 0.333 0 --> 1
+ node_16 --> H009 12 1 0.333 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_18 --> node_17 11 1 0.500 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_17 --> H006 9 1 0.500 2 --> 1
+ node_22 --> H010 5 1 1.000 2 ==> 1
+ node_22 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 16:
+
+Branch lengths and linkages for tree #16
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 21 root 0 0 0
+ 19 21 2 2 3
+ 18 19 3 3 4
+ 17 18 2 1 2
+ 16 17 1 1 1
+H002 (1) 16 0 0 0
+ 15 16 2 2 3
+H007 (3) 15 2 1 2
+H012 (11) 15 2 1 2
+H011 (14) 15 0 0 1
+H009 (12) 16 1 1 1
+H006 (13) 16 1 1 1
+H008 (4) 17 1 1 1
+H014 (5) 18 0 0 0
+H013 (6) 19 0 0 0
+H010 (2) 21 1 1 1
+H001 (7) 21 2 2 2
+ 20 21 1 1 1
+H003 (8) 20 1 1 1
+H005 (10) 20 1 1 1
+H000 (9)* 21 0 0 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+ /--------------------- H002
+ |
+ | /---------- H007
+ | |
+ +---------15---------- H012
+ /--------16 |
+ | | \---------- H011
+ | |
+ | +--------------------- H009
+ /---------17 |
+ | | \--------------------- H006
+ | |
+ /--------18 \------------------------------- H008
+ | |
+ /---------19 \------------------------------------------ H014
+ | |
+ | \---------------------------------------------------- H013
+ |
+ +--------------------------------------------------------------- H010
+ |
+---------21--------------------------------------------------------------- H001
+ |
+ | /---------- H003
+ +---------------------------------------------------20
+ | \---------- H005
+ |
+ \--------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_19 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_19 --> node_18 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_18 --> node_17 10 1 1.000 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_17 --> node_16 9 1 1.000 2 ==> 1
+ node_16 --> node_15 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_15 --> H012 11 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_16 --> H009 12 1 0.333 2 ==> 1
+ node_16 --> H006 11 1 0.333 2 ==> 1
+ node_17 --> H008 11 1 0.333 2 ==> 1
+ node_21 --> H010 5 1 1.000 2 ==> 1
+ node_21 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_21 --> node_20 3 1 1.000 2 ==> 1
+ node_20 --> H003 4 1 1.000 2 ==> 1
+ node_20 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 17:
+
+Branch lengths and linkages for tree #17
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 21 23 0 0 2
+ 20 21 2 2 2
+ 19 20 1 1 3
+ 18 19 2 2 2
+ 16 18 3 1 3
+H002 (1) 16 0 0 0
+ 15 16 1 1 1
+H008 (4) 15 1 1 1
+H006 (13) 15 0 0 0
+H009 (12) 16 1 1 1
+ 17 18 0 0 2
+H007 (3) 17 1 1 1
+H012 (11) 17 1 1 1
+H011 (14) 17 1 1 1
+H014 (5) 19 2 0 2
+H013 (6) 20 0 0 2
+H001 (7) 21 2 0 2
+H010 (2) 23 1 1 1
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (10) 22 1 1 1
+H000 (9)* 23 0 0 0
+-------------------------------------------------------------------------
+Sum 22
+
+Tree length = 22
+Consistency index (CI) = 0.5909
+Homoplasy index (HI) = 0.4091
+CI excluding uninformative characters = 0.5500
+HI excluding uninformative characters = 0.4500
+Retention index (RI) = 0.7805
+Rescaled consistency index (RC) = 0.4612
+
+ /------------------ H002
+ |
+ | /--------- H008
+ /-------16-------15
+ | | \--------- H006
+ | |
+ | \------------------ H009
+ /--------18
+ | | /--------- H007
+ | | |
+ | \----------------17--------- H012
+ /-------19 |
+ | | \--------- H011
+ | |
+ /-------20 \------------------------------------- H014
+ | |
+ /-------21 \---------------------------------------------- H013
+ | |
+ | \------------------------------------------------------- H001
+ |
+ +---------------------------------------------------------------- H010
+--------23
+ | /--------- H003
+ +-----------------------------------------------------22
+ | \--------- H005
+ |
+ \---------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_20 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_20 --> node_19 8 1 1.000 2 ==> 1
+ node_19 --> node_18 9 1 0.500 2 ==> 1
+ 10 1 1.000 2 ==> 1
+ node_18 --> node_16 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ 13 1 0.500 0 ==> 1
+ node_16 --> node_15 11 1 0.500 2 ==> 1
+ node_15 --> H008 9 1 0.500 1 ==> 2
+ node_16 --> H009 12 1 0.333 2 ==> 1
+ node_17 --> H007 12 1 0.333 2 ==> 1
+ node_17 --> H012 11 1 0.500 2 ==> 1
+ node_17 --> H011 13 1 0.500 0 ==> 1
+ node_19 --> H014 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ node_21 --> H001 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 18:
+
+Branch lengths and linkages for tree #18
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 21 23 0 0 3
+ 20 21 2 2 3
+ 19 20 3 1 4
+ 18 19 1 1 3
+ 16 18 1 0 1
+H002 (1) 16 0 0 0
+ 15 16 2 2 3
+H007 (3) 15 1 1 2
+H012 (11) 15 1 1 2
+H011 (14) 15 1 0 1
+H009 (12) 16 2 1 2
+ 17 18 2 1 2
+H008 (4) 17 0 0 1
+H006 (13) 17 1 0 1
+H014 (5) 19 0 0 0
+H013 (6) 20 0 0 2
+H001 (7) 21 2 0 2
+H010 (2) 23 1 1 1
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (10) 22 1 1 1
+H000 (9)* 23 0 0 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+ /------------------ H002
+ |
+ | /--------- H007
+ | |
+ /-------16-------15--------- H012
+ | | |
+ | | \--------- H011
+ | |
+ /--------18 \------------------ H009
+ | |
+ | | /--------- H008
+ /-------19 \----------------17
+ | | \--------- H006
+ | |
+ /-------20 \------------------------------------- H014
+ | |
+ /-------21 \---------------------------------------------- H013
+ | |
+ | \------------------------------------------------------- H001
+ |
+ +---------------------------------------------------------------- H010
+--------23
+ | /--------- H003
+ +-----------------------------------------------------22
+ | \--------- H005
+ |
+ \---------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_20 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_20 --> node_19 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_19 --> node_18 10 1 1.000 2 ==> 1
+ node_18 --> node_16 9 1 0.500 2 --> 1
+ node_16 --> node_15 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ node_15 --> H012 11 1 0.500 2 ==> 1
+ node_15 --> H011 13 1 0.333 0 --> 1
+ node_16 --> H009 12 1 0.333 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_18 --> node_17 11 1 0.500 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_17 --> H006 9 1 0.500 2 --> 1
+ node_21 --> H001 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 19:
+
+Branch lengths and linkages for tree #19
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 21 23 0 0 3
+ 20 21 2 2 3
+ 19 20 3 1 4
+ 18 19 2 1 3
+ 17 18 1 1 1
+ 16 17 0 0 1
+H002 (1) 16 0 0 0
+ 15 16 2 2 3
+H007 (3) 15 2 1 2
+H012 (11) 15 2 1 2
+H011 (14) 15 0 0 1
+H009 (12) 16 1 1 1
+H006 (13) 17 1 0 1
+H008 (4) 18 1 0 1
+H014 (5) 19 0 0 0
+H013 (6) 20 0 0 2
+H001 (7) 21 2 0 2
+H010 (2) 23 1 1 1
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (10) 22 1 1 1
+H000 (9)* 23 0 0 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+ /---------------- H002
+ |
+ | /-------- H007
+ | |
+ /------16------15-------- H012
+ | | |
+ | | \-------- H011
+ /------17 |
+ | | \---------------- H009
+ | |
+ /-------18 \------------------------ H006
+ | |
+ /------19 \-------------------------------- H008
+ | |
+ /------20 \----------------------------------------- H014
+ | |
+ /------21 \------------------------------------------------- H013
+ | |
+ | \--------------------------------------------------------- H001
+ |
+ +----------------------------------------------------------------- H010
+-------23
+ | /-------- H003
+ +-------------------------------------------------------22
+ | \-------- H005
+ |
+ \----------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_20 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_20 --> node_19 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_19 --> node_18 10 1 1.000 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_18 --> node_17 9 1 1.000 2 ==> 1
+ node_16 --> node_15 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_15 --> H012 11 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_16 --> H009 12 1 0.333 2 ==> 1
+ node_17 --> H006 11 1 0.333 2 --> 1
+ node_18 --> H008 11 1 0.333 2 --> 1
+ node_21 --> H001 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 20:
+
+Branch lengths and linkages for tree #20
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 24 root 0 0 0
+ 22 24 0 0 3
+ 21 22 2 2 3
+ 20 21 3 1 4
+ 19 20 2 2 3
+H002 (1) 19 0 0 0
+ 18 19 0 0 1
+ 16 18 2 2 3
+ 15 16 0 0 1
+H007 (3) 15 1 1 2
+H011 (14) 15 1 0 1
+H012 (11) 16 1 0 2
+ 17 18 2 0 2
+H008 (4) 17 1 1 1
+H006 (13) 17 0 0 0
+H009 (12) 19 2 1 2
+H014 (5) 20 0 0 0
+H013 (6) 21 0 0 2
+H001 (7) 22 2 0 2
+H010 (2) 24 1 1 1
+ 23 24 1 1 1
+H003 (8) 23 1 1 1
+H005 (10) 23 1 1 1
+H000 (9)* 24 0 0 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+ /-------------------------------- H002
+ |
+ | /-------- H007
+ | /------15
+ | | \-------- H011
+ | /------16
+ /-------19 | \---------------- H012
+ | +------18
+ | | | /-------- H008
+ | | \--------------17
+ /------20 | \-------- H006
+ | | |
+ | | \-------------------------------- H009
+ /------21 |
+ | | \----------------------------------------- H014
+ | |
+ /------22 \------------------------------------------------- H013
+ | |
+ | \--------------------------------------------------------- H001
+ |
+ +----------------------------------------------------------------- H010
+-------24
+ | /-------- H003
+ +-------------------------------------------------------23
+ | \-------- H005
+ |
+ \----------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_21 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_21 --> node_20 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_20 --> node_19 9 1 0.500 2 ==> 1
+ 10 1 1.000 2 ==> 1
+ node_18 --> node_16 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ node_15 --> H011 13 1 0.333 0 --> 1
+ node_16 --> H012 11 1 0.500 2 --> 1
+ node_18 --> node_17 11 1 0.500 2 --> 1
+ 13 1 0.333 0 --> 1
+ node_17 --> H008 9 1 0.500 1 ==> 2
+ node_19 --> H009 12 1 0.333 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_22 --> H001 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ node_24 --> H010 5 1 1.000 2 ==> 1
+ node_24 --> node_23 3 1 1.000 2 ==> 1
+ node_23 --> H003 4 1 1.000 2 ==> 1
+ node_23 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 21:
+
+Branch lengths and linkages for tree #21
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 21 23 0 0 3
+ 20 21 2 2 3
+ 19 20 3 1 4
+ 18 19 3 2 3
+H002 (1) 18 0 0 0
+ 17 18 1 1 1
+ 16 17 2 2 3
+ 15 16 1 1 1
+H007 (3) 15 2 1 2
+H011 (14) 15 0 0 1
+H012 (11) 16 1 0 1
+H008 (4) 17 1 1 1
+H006 (13) 17 0 0 0
+H009 (12) 18 1 1 1
+H014 (5) 19 0 0 0
+H013 (6) 20 0 0 2
+H001 (7) 21 2 0 2
+H010 (2) 23 1 1 1
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (10) 22 1 1 1
+H000 (9)* 23 0 0 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+ /-------------------------------- H002
+ |
+ | /-------- H007
+ | /------15
+ | | \-------- H011
+ | /------16
+ /-------18 | \---------------- H012
+ | | |
+ | +------17------------------------ H008
+ | | |
+ /------19 | \------------------------ H006
+ | | |
+ | | \-------------------------------- H009
+ /------20 |
+ | | \----------------------------------------- H014
+ | |
+ /------21 \------------------------------------------------- H013
+ | |
+ | \--------------------------------------------------------- H001
+ |
+ +----------------------------------------------------------------- H010
+-------23
+ | /-------- H003
+ +-------------------------------------------------------22
+ | \-------- H005
+ |
+ \----------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_20 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_20 --> node_19 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_19 --> node_18 9 1 0.500 2 ==> 1
+ 10 1 1.000 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_18 --> node_17 11 1 0.500 2 ==> 1
+ node_17 --> node_16 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_16 --> node_15 11 1 0.500 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_16 --> H012 13 1 0.333 1 --> 0
+ node_17 --> H008 9 1 0.500 1 ==> 2
+ node_18 --> H009 12 1 0.333 2 ==> 1
+ node_21 --> H001 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 22:
+
+Branch lengths and linkages for tree #22
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 24 root 0 0 0
+ 22 24 0 0 3
+ 21 22 2 2 3
+ 20 21 3 1 4
+ 19 20 2 2 3
+H002 (1) 19 0 0 0
+ 17 19 0 0 1
+ 16 17 2 2 3
+H007 (3) 16 1 0 2
+ 15 16 0 0 1
+H012 (11) 15 1 1 2
+H011 (14) 15 1 0 1
+H009 (12) 17 2 0 2
+ 18 19 2 1 2
+H008 (4) 18 1 1 1
+H006 (13) 18 0 0 0
+H014 (5) 20 0 0 0
+H013 (6) 21 0 0 2
+H001 (7) 22 2 0 2
+H010 (2) 24 1 1 1
+ 23 24 1 1 1
+H003 (8) 23 1 1 1
+H005 (10) 23 1 1 1
+H000 (9)* 24 0 0 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+ /-------------------------------- H002
+ |
+ | /---------------- H007
+ | |
+ | /------16 /-------- H012
+ | | \------15
+ /-------19------17 \-------- H011
+ | | |
+ | | \------------------------ H009
+ | |
+ /------20 | /-------- H008
+ | | \----------------------18
+ | | \-------- H006
+ /------21 |
+ | | \----------------------------------------- H014
+ | |
+ /------22 \------------------------------------------------- H013
+ | |
+ | \--------------------------------------------------------- H001
+ |
+ +----------------------------------------------------------------- H010
+-------24
+ | /-------- H003
+ +-------------------------------------------------------23
+ | \-------- H005
+ |
+ \----------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_21 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_21 --> node_20 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_20 --> node_19 9 1 0.500 2 ==> 1
+ 10 1 1.000 2 ==> 1
+ node_17 --> node_16 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 --> 1
+ node_15 --> H012 11 1 0.500 2 ==> 1
+ node_15 --> H011 13 1 0.333 0 --> 1
+ node_17 --> H009 12 1 0.333 2 --> 1
+ 13 1 0.333 0 --> 1
+ node_19 --> node_18 11 1 0.500 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_18 --> H008 9 1 0.500 1 ==> 2
+ node_22 --> H001 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ node_24 --> H010 5 1 1.000 2 ==> 1
+ node_24 --> node_23 3 1 1.000 2 ==> 1
+ node_23 --> H003 4 1 1.000 2 ==> 1
+ node_23 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 23:
+
+Branch lengths and linkages for tree #23
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 21 23 2 2 2
+ 20 21 1 1 1
+ 19 20 2 2 2
+ 18 19 0 0 1
+ 17 18 3 3 3
+ 15 17 0 0 1
+H002 (1) 15 0 0 0
+H009 (12) 15 1 1 1
+ 16 17 1 0 1
+H008 (4) 16 1 1 1
+H006 (13) 16 0 0 0
+H012 (11) 18 1 0 1
+H007 (3) 19 1 1 1
+H011 (14) 19 1 1 1
+H014 (5) 20 2 2 2
+H013 (6) 21 0 0 0
+H010 (2) 23 1 1 1
+H001 (7) 23 2 2 2
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (10) 22 1 1 1
+H000 (9)* 23 0 0 0
+-------------------------------------------------------------------------
+Sum 22
+
+Tree length = 22
+Consistency index (CI) = 0.5909
+Homoplasy index (HI) = 0.4091
+CI excluding uninformative characters = 0.5500
+HI excluding uninformative characters = 0.4500
+Retention index (RI) = 0.7805
+Rescaled consistency index (RC) = 0.4612
+
+ /--------- H002
+ /-------15
+ | \--------- H009
+ /-------17
+ | | /--------- H008
+ | \-------16
+ /--------18 \--------- H006
+ | |
+ | \--------------------------- H012
+ /-------19
+ | +------------------------------------- H007
+ | |
+ /-------20 \------------------------------------- H011
+ | |
+ /-------21 \---------------------------------------------- H014
+ | |
+ | \------------------------------------------------------- H013
+ |
+ +---------------------------------------------------------------- H010
+ |
+--------23---------------------------------------------------------------- H001
+ |
+ | /--------- H003
+ +-----------------------------------------------------22
+ | \--------- H005
+ |
+ \---------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_21 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_21 --> node_20 8 1 1.000 2 ==> 1
+ node_20 --> node_19 9 1 0.500 2 ==> 1
+ 10 1 1.000 2 ==> 1
+ node_18 --> node_17 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ 13 1 0.500 0 ==> 1
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_17 --> node_16 11 1 0.500 2 --> 1
+ node_16 --> H008 9 1 0.500 1 ==> 2
+ node_18 --> H012 11 1 0.500 2 --> 1
+ node_19 --> H007 12 1 0.333 2 ==> 1
+ node_19 --> H011 13 1 0.500 0 ==> 1
+ node_20 --> H014 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+ node_23 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 24:
+
+Branch lengths and linkages for tree #24
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 21 23 2 2 2
+ 20 21 1 1 3
+ 18 20 2 2 3
+ 17 18 2 0 3
+ 15 17 1 0 1
+H002 (1) 15 0 0 0
+H009 (12) 15 1 1 1
+ 16 17 1 1 1
+H008 (4) 16 0 0 1
+H006 (13) 16 1 0 1
+H014 (5) 18 0 0 2
+ 19 20 2 0 2
+H007 (3) 19 1 1 1
+H012 (11) 19 1 1 1
+H011 (14) 19 1 1 1
+H013 (6) 21 0 0 0
+H010 (2) 23 1 1 1
+H001 (7) 23 2 2 2
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (10) 22 1 1 1
+H000 (9)* 23 0 0 0
+-------------------------------------------------------------------------
+Sum 22
+
+Tree length = 22
+Consistency index (CI) = 0.5909
+Homoplasy index (HI) = 0.4091
+CI excluding uninformative characters = 0.5500
+HI excluding uninformative characters = 0.4500
+Retention index (RI) = 0.7805
+Rescaled consistency index (RC) = 0.4612
+
+ /---------- H002
+ /---------15
+ | \---------- H009
+ /--------17
+ | | /---------- H008
+ | \---------16
+ /---------18 \---------- H006
+ | |
+ | \------------------------------- H014
+ /--------20
+ | | /---------- H007
+ | | |
+ | \------------------------------19---------- H012
+ /---------21 |
+ | | \---------- H011
+ | |
+ | \---------------------------------------------------- H013
+ |
+ +--------------------------------------------------------------- H010
+ |
+---------23--------------------------------------------------------------- H001
+ |
+ | /---------- H003
+ +---------------------------------------------------22
+ | \---------- H005
+ |
+ \--------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_21 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_21 --> node_20 8 1 1.000 2 ==> 1
+ node_20 --> node_18 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_18 --> node_17 10 1 0.500 2 --> 1
+ 13 1 0.500 0 --> 1
+ node_17 --> node_15 9 1 0.333 2 --> 1
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_17 --> node_16 11 1 0.500 2 ==> 1
+ node_16 --> H006 9 1 0.333 2 --> 1
+ node_20 --> node_19 9 1 0.333 2 --> 1
+ 10 1 0.500 2 --> 1
+ node_19 --> H007 12 1 0.333 2 ==> 1
+ node_19 --> H012 11 1 0.500 2 ==> 1
+ node_19 --> H011 13 1 0.500 0 ==> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+ node_23 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 25:
+
+Branch lengths and linkages for tree #25
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 22 root 0 0 0
+ 20 22 2 2 2
+ 19 20 1 1 1
+ 18 19 2 2 2
+ 17 18 1 1 1
+ 16 17 3 3 3
+ 15 16 1 1 1
+H002 (1) 15 0 0 0
+H009 (12) 15 1 1 1
+H008 (4) 16 1 1 1
+H006 (13) 16 0 0 0
+H012 (11) 17 0 0 0
+H007 (3) 18 1 1 1
+H011 (14) 18 1 1 1
+H014 (5) 19 2 2 2
+H013 (6) 20 0 0 0
+H010 (2) 22 1 1 1
+H001 (7) 22 2 2 2
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (10) 21 1 1 1
+H000 (9)* 22 0 0 0
+-------------------------------------------------------------------------
+Sum 22
+
+Tree length = 22
+Consistency index (CI) = 0.5909
+Homoplasy index (HI) = 0.4091
+CI excluding uninformative characters = 0.5500
+HI excluding uninformative characters = 0.4500
+Retention index (RI) = 0.7805
+Rescaled consistency index (RC) = 0.4612
+
+ /--------- H002
+ /-------15
+ | \--------- H009
+ |
+ /-------16------------------ H008
+ | |
+ /--------17 \------------------ H006
+ | |
+ | \--------------------------- H012
+ /-------18
+ | +------------------------------------- H007
+ | |
+ /-------19 \------------------------------------- H011
+ | |
+ /-------20 \---------------------------------------------- H014
+ | |
+ | \------------------------------------------------------- H013
+ |
+ +---------------------------------------------------------------- H010
+ |
+--------22---------------------------------------------------------------- H001
+ |
+ | /--------- H003
+ +-----------------------------------------------------21
+ | \--------- H005
+ |
+ \---------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_20 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_20 --> node_19 8 1 1.000 2 ==> 1
+ node_19 --> node_18 9 1 0.500 2 ==> 1
+ 10 1 1.000 2 ==> 1
+ node_18 --> node_17 11 1 0.500 2 ==> 1
+ node_17 --> node_16 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ 13 1 0.500 0 ==> 1
+ node_16 --> node_15 11 1 0.500 1 ==> 2
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_16 --> H008 9 1 0.500 1 ==> 2
+ node_18 --> H007 12 1 0.333 2 ==> 1
+ node_18 --> H011 13 1 0.500 0 ==> 1
+ node_19 --> H014 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_22 --> H010 5 1 1.000 2 ==> 1
+ node_22 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 26:
+
+Branch lengths and linkages for tree #26
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 21 23 2 2 2
+ 20 21 1 1 2
+ 18 20 2 2 3
+ 17 18 2 0 3
+ 16 17 1 1 1
+ 15 16 0 0 1
+H002 (1) 15 0 0 0
+H009 (12) 15 1 1 1
+H006 (13) 16 1 0 1
+H008 (4) 17 1 0 1
+H014 (5) 18 0 0 1
+ 19 20 2 1 2
+H007 (3) 19 1 1 1
+H012 (11) 19 1 1 1
+H011 (14) 19 1 1 1
+H013 (6) 21 0 0 0
+H010 (2) 23 1 1 1
+H001 (7) 23 2 2 2
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (10) 22 1 1 1
+H000 (9)* 23 0 0 0
+-------------------------------------------------------------------------
+Sum 22
+
+Tree length = 22
+Consistency index (CI) = 0.5909
+Homoplasy index (HI) = 0.4091
+CI excluding uninformative characters = 0.5500
+HI excluding uninformative characters = 0.4500
+Retention index (RI) = 0.7805
+Rescaled consistency index (RC) = 0.4612
+
+ /--------- H002
+ /-------15
+ | \--------- H009
+ /-------16
+ | \------------------ H006
+ /--------17
+ | \--------------------------- H008
+ /-------18
+ | \------------------------------------- H014
+ |
+ /-------20 /--------- H007
+ | | |
+ | \-----------------------------------19--------- H012
+ /-------21 |
+ | | \--------- H011
+ | |
+ | \------------------------------------------------------- H013
+ |
+ +---------------------------------------------------------------- H010
+ |
+--------23---------------------------------------------------------------- H001
+ |
+ | /--------- H003
+ +-----------------------------------------------------22
+ | \--------- H005
+ |
+ \---------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_21 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_21 --> node_20 8 1 1.000 2 ==> 1
+ node_20 --> node_18 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_18 --> node_17 10 1 0.500 2 --> 1
+ 13 1 0.500 0 --> 1
+ node_17 --> node_16 9 1 0.500 2 ==> 1
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_16 --> H006 11 1 0.333 2 --> 1
+ node_17 --> H008 11 1 0.333 2 --> 1
+ node_20 --> node_19 9 1 0.500 2 ==> 1
+ 10 1 0.500 2 --> 1
+ node_19 --> H007 12 1 0.333 2 ==> 1
+ node_19 --> H012 11 1 0.333 2 ==> 1
+ node_19 --> H011 13 1 0.500 0 ==> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+ node_23 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 27:
+
+Branch lengths and linkages for tree #27
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 21 root 0 0 0
+ 19 21 2 2 2
+ 18 19 3 3 3
+ 17 18 3 3 3
+H002 (1) 17 0 0 0
+ 16 17 0 0 1
+ 15 16 1 1 1
+H008 (4) 15 1 0 1
+H006 (13) 15 0 0 1
+H014 (5) 16 2 1 2
+H009 (12) 17 1 1 1
+H007 (3) 18 1 1 1
+H012 (11) 18 1 1 1
+H011 (14) 18 1 1 1
+H013 (6) 19 0 0 0
+H010 (2) 21 1 1 1
+H001 (7) 21 2 2 2
+ 20 21 1 1 1
+H003 (8) 20 1 1 1
+H005 (10) 20 1 1 1
+H000 (9)* 21 0 0 0
+-------------------------------------------------------------------------
+Sum 22
+
+Tree length = 22
+Consistency index (CI) = 0.5909
+Homoplasy index (HI) = 0.4091
+CI excluding uninformative characters = 0.5500
+HI excluding uninformative characters = 0.4500
+Retention index (RI) = 0.7805
+Rescaled consistency index (RC) = 0.4612
+
+ /------------------------------- H002
+ |
+ | /---------- H008
+ | /---------15
+ /---------17 | \---------- H006
+ | +--------16
+ | | \--------------------- H014
+ | |
+ | \------------------------------- H009
+ /--------18
+ | +------------------------------------------ H007
+ | |
+ | +------------------------------------------ H012
+ /---------19 |
+ | | \------------------------------------------ H011
+ | |
+ | \---------------------------------------------------- H013
+ |
+ +--------------------------------------------------------------- H010
+ |
+---------21--------------------------------------------------------------- H001
+ |
+ | /---------- H003
+ +---------------------------------------------------20
+ | \---------- H005
+ |
+ \--------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_19 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_19 --> node_18 8 1 1.000 2 ==> 1
+ 9 1 0.333 2 ==> 1
+ 10 1 0.500 2 ==> 1
+ node_18 --> node_17 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ 13 1 0.500 0 ==> 1
+ node_16 --> node_15 11 1 0.500 2 ==> 1
+ node_15 --> H008 9 1 0.333 1 --> 2
+ node_16 --> H014 9 1 0.333 1 --> 2
+ 10 1 0.500 1 ==> 2
+ node_17 --> H009 12 1 0.333 2 ==> 1
+ node_18 --> H007 12 1 0.333 2 ==> 1
+ node_18 --> H012 11 1 0.500 2 ==> 1
+ node_18 --> H011 13 1 0.500 0 ==> 1
+ node_21 --> H010 5 1 1.000 2 ==> 1
+ node_21 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_21 --> node_20 3 1 1.000 2 ==> 1
+ node_20 --> H003 4 1 1.000 2 ==> 1
+ node_20 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 28:
+
+Branch lengths and linkages for tree #28
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 21 root 0 0 0
+ 19 21 2 2 2
+ 18 19 3 3 3
+ 17 18 3 3 3
+H002 (1) 17 0 0 0
+ 16 17 0 0 1
+ 15 16 1 1 1
+H008 (4) 15 1 0 1
+H014 (5) 15 1 1 2
+H006 (13) 16 1 0 1
+H009 (12) 17 1 1 1
+H007 (3) 18 1 1 1
+H012 (11) 18 1 1 1
+H011 (14) 18 1 1 1
+H013 (6) 19 0 0 0
+H010 (2) 21 1 1 1
+H001 (7) 21 2 2 2
+ 20 21 1 1 1
+H003 (8) 20 1 1 1
+H005 (10) 20 1 1 1
+H000 (9)* 21 0 0 0
+-------------------------------------------------------------------------
+Sum 22
+
+Tree length = 22
+Consistency index (CI) = 0.5909
+Homoplasy index (HI) = 0.4091
+CI excluding uninformative characters = 0.5500
+HI excluding uninformative characters = 0.4500
+Retention index (RI) = 0.7805
+Rescaled consistency index (RC) = 0.4612
+
+ /------------------------------- H002
+ |
+ | /---------- H008
+ | /---------15
+ /---------17 | \---------- H014
+ | +--------16
+ | | \--------------------- H006
+ | |
+ | \------------------------------- H009
+ /--------18
+ | +------------------------------------------ H007
+ | |
+ | +------------------------------------------ H012
+ /---------19 |
+ | | \------------------------------------------ H011
+ | |
+ | \---------------------------------------------------- H013
+ |
+ +--------------------------------------------------------------- H010
+ |
+---------21--------------------------------------------------------------- H001
+ |
+ | /---------- H003
+ +---------------------------------------------------20
+ | \---------- H005
+ |
+ \--------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_19 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_19 --> node_18 8 1 1.000 2 ==> 1
+ 9 1 0.500 2 ==> 1
+ 10 1 0.500 2 ==> 1
+ node_18 --> node_17 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ 13 1 0.500 0 ==> 1
+ node_16 --> node_15 9 1 0.500 1 ==> 2
+ node_15 --> H008 11 1 0.333 2 --> 1
+ node_15 --> H014 10 1 0.500 1 ==> 2
+ node_16 --> H006 11 1 0.333 2 --> 1
+ node_17 --> H009 12 1 0.333 2 ==> 1
+ node_18 --> H007 12 1 0.333 2 ==> 1
+ node_18 --> H012 11 1 0.333 2 ==> 1
+ node_18 --> H011 13 1 0.500 0 ==> 1
+ node_21 --> H010 5 1 1.000 2 ==> 1
+ node_21 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_21 --> node_20 3 1 1.000 2 ==> 1
+ node_20 --> H003 4 1 1.000 2 ==> 1
+ node_20 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 29:
+
+Branch lengths and linkages for tree #29
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 22 root 0 0 0
+ 20 22 0 0 3
+ 19 20 2 2 3
+ 18 19 3 1 4
+ 17 18 2 1 2
+ 16 17 1 1 1
+H002 (1) 16 0 0 0
+ 15 16 2 2 3
+H007 (3) 15 2 1 2
+H012 (11) 15 2 1 2
+H011 (14) 15 0 0 1
+H009 (12) 16 1 1 1
+H006 (13) 16 1 1 1
+H008 (4) 17 1 1 1
+H014 (5) 18 0 0 0
+H013 (6) 19 0 0 2
+H001 (7) 20 2 0 2
+H010 (2) 22 1 1 1
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (10) 21 1 1 1
+H000 (9)* 22 0 0 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+ /------------------ H002
+ |
+ | /--------- H007
+ | |
+ +-------15--------- H012
+ /-------16 |
+ | | \--------- H011
+ | |
+ | +------------------ H009
+ /--------17 |
+ | | \------------------ H006
+ | |
+ /-------18 \--------------------------- H008
+ | |
+ /-------19 \------------------------------------- H014
+ | |
+ /-------20 \---------------------------------------------- H013
+ | |
+ | \------------------------------------------------------- H001
+ |
+ +---------------------------------------------------------------- H010
+--------22
+ | /--------- H003
+ +-----------------------------------------------------21
+ | \--------- H005
+ |
+ \---------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_20 --> node_19 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_19 --> node_18 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_18 --> node_17 10 1 1.000 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_17 --> node_16 9 1 1.000 2 ==> 1
+ node_16 --> node_15 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_15 --> H012 11 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_16 --> H009 12 1 0.333 2 ==> 1
+ node_16 --> H006 11 1 0.333 2 ==> 1
+ node_17 --> H008 11 1 0.333 2 ==> 1
+ node_20 --> H001 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ node_22 --> H010 5 1 1.000 2 ==> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 30:
+
+Branch lengths and linkages for tree #30
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 22 root 0 0 0
+ 20 22 2 2 2
+ 19 20 2 2 3
+ 17 19 3 3 3
+ 15 17 1 0 1
+H002 (1) 15 0 0 0
+H009 (12) 15 1 1 1
+ 16 17 1 1 1
+H008 (4) 16 0 0 1
+H006 (13) 16 1 0 1
+H014 (5) 17 1 1 2
+ 18 19 1 0 1
+H007 (3) 18 1 1 1
+H012 (11) 18 1 1 1
+H011 (14) 18 1 1 1
+H013 (6) 20 0 0 0
+H010 (2) 22 1 1 1
+H001 (7) 22 2 2 2
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (10) 21 1 1 1
+H000 (9)* 22 0 0 0
+-------------------------------------------------------------------------
+Sum 22
+
+Tree length = 22
+Consistency index (CI) = 0.5909
+Homoplasy index (HI) = 0.4091
+CI excluding uninformative characters = 0.5500
+HI excluding uninformative characters = 0.4500
+Retention index (RI) = 0.7805
+Rescaled consistency index (RC) = 0.4612
+
+ /------------ H002
+ /----------15
+ | \------------ H009
+ |
+ | /------------ H008
+ /----------17----------16
+ | | \------------ H006
+ | |
+ | \------------------------ H014
+ /-----------19
+ | | /------------ H007
+ | | |
+ | \----------------------18------------ H012
+ /----------20 |
+ | | \------------ H011
+ | |
+ | \------------------------------------------------- H013
+ |
+ +------------------------------------------------------------- H010
+ |
+-----------22------------------------------------------------------------- H001
+ |
+ | /------------ H003
+ +-----------------------------------------------21
+ | \------------ H005
+ |
+ \------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_20 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_20 --> node_19 8 1 1.000 2 ==> 1
+ 10 1 0.500 2 ==> 1
+ node_19 --> node_17 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ 13 1 0.500 0 ==> 1
+ node_17 --> node_15 9 1 0.333 2 --> 1
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_17 --> node_16 11 1 0.500 2 ==> 1
+ node_16 --> H006 9 1 0.333 2 --> 1
+ node_17 --> H014 10 1 0.500 1 ==> 2
+ node_19 --> node_18 9 1 0.333 2 --> 1
+ node_18 --> H007 12 1 0.333 2 ==> 1
+ node_18 --> H012 11 1 0.500 2 ==> 1
+ node_18 --> H011 13 1 0.500 0 ==> 1
+ node_22 --> H010 5 1 1.000 2 ==> 1
+ node_22 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 31:
+
+Branch lengths and linkages for tree #31
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 25 root 0 0 0
+ 23 25 0 0 3
+ 22 23 2 2 3
+ 21 22 3 1 4
+ 20 21 1 1 3
+ 18 20 1 0 1
+H002 (1) 18 0 0 0
+ 17 18 0 0 1
+ 16 17 2 2 3
+H007 (3) 16 1 0 2
+ 15 16 0 0 1
+H012 (11) 15 1 1 2
+H011 (14) 15 1 0 1
+H009 (12) 17 2 0 2
+ 19 20 2 1 2
+H008 (4) 19 0 0 1
+H006 (13) 19 1 0 1
+H014 (5) 21 0 0 0
+H013 (6) 22 0 0 2
+H001 (7) 23 2 0 2
+H010 (2) 25 1 1 1
+ 24 25 1 1 1
+H003 (8) 24 1 1 1
+H005 (10) 24 1 1 1
+H000 (9)* 25 0 0 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+ /----------------------------- H002
+ |
+ | /--------------- H007
+ /-----18 |
+ | | /-----16 /------- H012
+ | | | \------15
+ | \-----17 \------- H011
+ /------20 |
+ | | \---------------------- H009
+ | |
+ | | /------- H008
+ /-----21 \---------------------------19
+ | | \------- H006
+ | |
+ /-----22 \-------------------------------------------- H014
+ | |
+ /------23 \--------------------------------------------------- H013
+ | |
+ | \---------------------------------------------------------- H001
+ |
+ +------------------------------------------------------------------ H010
+------25
+ | /------- H003
+ +---------------------------------------------------------24
+ | \------- H005
+ |
+ \------------------------------------------------------------------ H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_22 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_22 --> node_21 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_21 --> node_20 10 1 1.000 2 ==> 1
+ node_20 --> node_18 9 1 0.500 2 --> 1
+ node_17 --> node_16 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 --> 1
+ node_15 --> H012 11 1 0.500 2 ==> 1
+ node_15 --> H011 13 1 0.333 0 --> 1
+ node_17 --> H009 12 1 0.333 2 --> 1
+ 13 1 0.333 0 --> 1
+ node_20 --> node_19 11 1 0.500 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_19 --> H006 9 1 0.500 2 --> 1
+ node_23 --> H001 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ node_25 --> H010 5 1 1.000 2 ==> 1
+ node_25 --> node_24 3 1 1.000 2 ==> 1
+ node_24 --> H003 4 1 1.000 2 ==> 1
+ node_24 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 32:
+
+Branch lengths and linkages for tree #32
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 25 root 0 0 0
+ 23 25 0 0 3
+ 22 23 2 2 3
+ 21 22 3 1 4
+ 20 21 2 1 3
+ 15 20 1 0 1
+H002 (1) 15 0 0 0
+H009 (12) 15 1 1 1
+ 19 20 1 1 1
+ 18 19 1 0 1
+ 17 18 2 2 3
+ 16 17 1 1 1
+H007 (3) 16 2 1 2
+H011 (14) 16 0 0 1
+H012 (11) 17 1 0 1
+H006 (13) 18 0 0 0
+H008 (4) 19 0 0 1
+H014 (5) 21 0 0 0
+H013 (6) 22 0 0 2
+H001 (7) 23 2 0 2
+H010 (2) 25 1 1 1
+ 24 25 1 1 1
+H003 (8) 24 1 1 1
+H005 (10) 24 1 1 1
+H000 (9)* 25 0 0 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+ /------- H002
+ /---------------------------15
+ | \------- H009
+ |
+ | /------- H007
+ | /------16
+ /------20 | \------- H011
+ | | /-----17
+ | | | \--------------- H012
+ | | /-----18
+ /-----21 | | \---------------------- H006
+ | | \-----19
+ | | \----------------------------- H008
+ /-----22 |
+ | | \-------------------------------------------- H014
+ | |
+ /------23 \--------------------------------------------------- H013
+ | |
+ | \---------------------------------------------------------- H001
+ |
+ +------------------------------------------------------------------ H010
+------25
+ | /------- H003
+ +---------------------------------------------------------24
+ | \------- H005
+ |
+ \------------------------------------------------------------------ H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_22 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_22 --> node_21 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_21 --> node_20 10 1 1.000 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_20 --> node_15 9 1 0.500 2 --> 1
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_20 --> node_19 11 1 0.500 2 ==> 1
+ node_19 --> node_18 9 1 0.500 2 --> 1
+ node_18 --> node_17 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_17 --> node_16 11 1 0.500 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_17 --> H012 13 1 0.333 1 --> 0
+ node_23 --> H001 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ node_25 --> H010 5 1 1.000 2 ==> 1
+ node_25 --> node_24 3 1 1.000 2 ==> 1
+ node_24 --> H003 4 1 1.000 2 ==> 1
+ node_24 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 33:
+
+Branch lengths and linkages for tree #33
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 21 23 2 2 3
+ 20 21 3 3 4
+ 19 20 2 1 2
+ 18 19 1 1 1
+H002 (1) 18 0 0 0
+ 17 18 0 0 1
+ 16 17 2 2 3
+H007 (3) 16 2 0 2
+ 15 16 0 0 1
+H012 (11) 15 2 1 2
+H011 (14) 15 0 0 1
+H009 (12) 17 1 0 1
+H006 (13) 18 1 1 1
+H008 (4) 19 1 1 1
+H014 (5) 20 0 0 0
+H013 (6) 21 0 0 0
+H010 (2) 23 1 1 1
+H001 (7) 23 2 2 2
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (10) 22 1 1 1
+H000 (9)* 23 0 0 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+ /-------------------------------- H002
+ |
+ | /---------------- H007
+ | |
+ | /------16 /-------- H012
+ /-------18 | \------15
+ | +------17 \-------- H011
+ | | |
+ | | \------------------------ H009
+ /------19 |
+ | | \-------------------------------- H006
+ | |
+ /------20 \----------------------------------------- H008
+ | |
+ /------21 \------------------------------------------------- H014
+ | |
+ | \--------------------------------------------------------- H013
+ |
+ +----------------------------------------------------------------- H010
+ |
+-------23----------------------------------------------------------------- H001
+ |
+ | /-------- H003
+ +-------------------------------------------------------22
+ | \-------- H005
+ |
+ \----------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_21 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_21 --> node_20 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_20 --> node_19 10 1 1.000 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_19 --> node_18 9 1 1.000 2 ==> 1
+ node_17 --> node_16 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 --> 1
+ 13 1 0.333 1 --> 0
+ node_15 --> H012 11 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_17 --> H009 12 1 0.333 2 --> 1
+ node_18 --> H006 11 1 0.333 2 ==> 1
+ node_19 --> H008 11 1 0.333 2 ==> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+ node_23 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 34:
+
+Branch lengths and linkages for tree #34
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 21 23 2 2 3
+ 20 21 3 3 4
+ 19 20 2 2 3
+H002 (1) 19 0 0 0
+ 17 19 0 0 1
+ 16 17 2 2 3
+H007 (3) 16 1 0 2
+ 15 16 0 0 1
+H012 (11) 15 1 1 2
+H011 (14) 15 1 0 1
+H009 (12) 17 2 0 2
+ 18 19 2 1 2
+H008 (4) 18 1 1 1
+H006 (13) 18 0 0 0
+H014 (5) 20 0 0 0
+H001 (7) 21 0 0 0
+H010 (2) 23 1 1 1
+H013 (6) 23 2 2 2
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (10) 22 1 1 1
+H000 (9)* 23 0 0 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+ /------------------------------------- H002
+ |
+ | /------------------ H007
+ | |
+ | /-------16 /--------- H012
+ | | \-------15
+ /-------19--------17 \--------- H011
+ | | |
+ | | \--------------------------- H009
+ | |
+ /-------20 | /--------- H008
+ | | \--------------------------18
+ | | \--------- H006
+ /-------21 |
+ | | \---------------------------------------------- H014
+ | |
+ | \------------------------------------------------------- H001
+ |
+ +---------------------------------------------------------------- H010
+ |
+--------23---------------------------------------------------------------- H013
+ |
+ | /--------- H003
+ +-----------------------------------------------------22
+ | \--------- H005
+ |
+ \---------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_21 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_21 --> node_20 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_20 --> node_19 9 1 0.500 2 ==> 1
+ 10 1 1.000 2 ==> 1
+ node_17 --> node_16 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 --> 1
+ node_15 --> H012 11 1 0.500 2 ==> 1
+ node_15 --> H011 13 1 0.333 0 --> 1
+ node_17 --> H009 12 1 0.333 2 --> 1
+ 13 1 0.333 0 --> 1
+ node_19 --> node_18 11 1 0.500 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_18 --> H008 9 1 0.500 1 ==> 2
+ node_23 --> H010 5 1 1.000 2 ==> 1
+ node_23 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 35:
+
+Branch lengths and linkages for tree #35
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 22 root 0 0 0
+ 20 22 2 2 2
+ 19 20 3 3 3
+ 18 19 0 0 1
+ 17 18 3 3 3
+ 16 17 0 0 1
+H002 (1) 16 0 0 0
+ 15 16 1 1 1
+H008 (4) 15 1 1 1
+H006 (13) 15 0 0 0
+H014 (5) 16 2 2 2
+H009 (12) 17 1 0 1
+H007 (3) 18 1 0 1
+H012 (11) 19 1 1 1
+H011 (14) 19 1 1 1
+H013 (6) 20 0 0 0
+H010 (2) 22 1 1 1
+H001 (7) 22 2 2 2
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (10) 21 1 1 1
+H000 (9)* 22 0 0 0
+-------------------------------------------------------------------------
+Sum 22
+
+Tree length = 22
+Consistency index (CI) = 0.5909
+Homoplasy index (HI) = 0.4091
+CI excluding uninformative characters = 0.5500
+HI excluding uninformative characters = 0.4500
+Retention index (RI) = 0.7805
+Rescaled consistency index (RC) = 0.4612
+
+ /------------------ H002
+ |
+ | /--------- H008
+ /-------16-------15
+ | | \--------- H006
+ | |
+ /--------17 \------------------ H014
+ | |
+ /-------18 \--------------------------- H009
+ | |
+ | \------------------------------------- H007
+ /-------19
+ | +---------------------------------------------- H012
+ | |
+ /-------20 \---------------------------------------------- H011
+ | |
+ | \------------------------------------------------------- H013
+ |
+ +---------------------------------------------------------------- H010
+ |
+--------22---------------------------------------------------------------- H001
+ |
+ | /--------- H003
+ +-----------------------------------------------------21
+ | \--------- H005
+ |
+ \---------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_20 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_20 --> node_19 8 1 1.000 2 ==> 1
+ 9 1 0.333 2 ==> 1
+ 10 1 0.500 2 ==> 1
+ node_18 --> node_17 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ 13 1 0.500 0 ==> 1
+ node_16 --> node_15 11 1 0.500 2 ==> 1
+ node_15 --> H008 9 1 0.333 1 ==> 2
+ node_16 --> H014 9 1 0.333 1 ==> 2
+ 10 1 0.500 1 ==> 2
+ node_17 --> H009 12 1 0.333 2 --> 1
+ node_18 --> H007 12 1 0.333 2 --> 1
+ node_19 --> H012 11 1 0.500 2 ==> 1
+ node_19 --> H011 13 1 0.500 0 ==> 1
+ node_22 --> H010 5 1 1.000 2 ==> 1
+ node_22 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 36:
+
+Branch lengths and linkages for tree #36
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 24 root 0 0 0
+ 22 24 0 0 3
+ 21 22 2 2 3
+ 20 21 3 1 4
+ 19 20 2 2 3
+H002 (1) 19 0 0 0
+ 17 19 0 0 1
+ 16 17 2 2 3
+H007 (3) 16 1 0 2
+ 15 16 0 0 1
+H012 (11) 15 1 1 2
+H011 (14) 15 1 0 1
+H009 (12) 17 2 0 2
+ 18 19 2 1 2
+H008 (4) 18 1 1 1
+H006 (13) 18 0 0 0
+H014 (5) 20 0 0 0
+H001 (7) 21 0 0 2
+H013 (6) 22 2 0 2
+H010 (2) 24 1 1 1
+ 23 24 1 1 1
+H003 (8) 23 1 1 1
+H005 (10) 23 1 1 1
+H000 (9)* 24 0 0 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+ /-------------------------------- H002
+ |
+ | /---------------- H007
+ | |
+ | /------16 /-------- H012
+ | | \------15
+ /-------19------17 \-------- H011
+ | | |
+ | | \------------------------ H009
+ | |
+ /------20 | /-------- H008
+ | | \----------------------18
+ | | \-------- H006
+ /------21 |
+ | | \----------------------------------------- H014
+ | |
+ /------22 \------------------------------------------------- H001
+ | |
+ | \--------------------------------------------------------- H013
+ |
+ +----------------------------------------------------------------- H010
+-------24
+ | /-------- H003
+ +-------------------------------------------------------23
+ | \-------- H005
+ |
+ \----------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_21 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_21 --> node_20 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_20 --> node_19 9 1 0.500 2 ==> 1
+ 10 1 1.000 2 ==> 1
+ node_17 --> node_16 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 --> 1
+ node_15 --> H012 11 1 0.500 2 ==> 1
+ node_15 --> H011 13 1 0.333 0 --> 1
+ node_17 --> H009 12 1 0.333 2 --> 1
+ 13 1 0.333 0 --> 1
+ node_19 --> node_18 11 1 0.500 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_18 --> H008 9 1 0.500 1 ==> 2
+ node_22 --> H013 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ node_24 --> H010 5 1 1.000 2 ==> 1
+ node_24 --> node_23 3 1 1.000 2 ==> 1
+ node_23 --> H003 4 1 1.000 2 ==> 1
+ node_23 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 37:
+
+Branch lengths and linkages for tree #37
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 22 root 0 0 0
+ 20 22 2 2 2
+ 19 20 3 3 3
+ 18 19 0 0 1
+ 17 18 3 3 3
+ 15 17 0 0 1
+H002 (1) 15 0 0 0
+H014 (5) 15 2 2 2
+H009 (12) 15 1 1 1
+ 16 17 1 0 1
+H008 (4) 16 1 1 1
+H006 (13) 16 0 0 0
+H012 (11) 18 1 0 1
+H007 (3) 19 1 1 1
+H011 (14) 19 1 1 1
+H013 (6) 20 0 0 0
+H010 (2) 22 1 1 1
+H001 (7) 22 2 2 2
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (10) 21 1 1 1
+H000 (9)* 22 0 0 0
+-------------------------------------------------------------------------
+Sum 22
+
+Tree length = 22
+Consistency index (CI) = 0.5909
+Homoplasy index (HI) = 0.4091
+CI excluding uninformative characters = 0.5500
+HI excluding uninformative characters = 0.4500
+Retention index (RI) = 0.7805
+Rescaled consistency index (RC) = 0.4612
+
+ /---------- H002
+ |
+ /---------15---------- H014
+ | |
+ | \---------- H009
+ /--------17
+ | | /---------- H008
+ | \---------16
+ /---------18 \---------- H006
+ | |
+ | \------------------------------- H012
+ /--------19
+ | +------------------------------------------ H007
+ | |
+ /---------20 \------------------------------------------ H011
+ | |
+ | \---------------------------------------------------- H013
+ |
+ +--------------------------------------------------------------- H010
+ |
+---------22--------------------------------------------------------------- H001
+ |
+ | /---------- H003
+ +---------------------------------------------------21
+ | \---------- H005
+ |
+ \--------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_20 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_20 --> node_19 8 1 1.000 2 ==> 1
+ 9 1 0.333 2 ==> 1
+ 10 1 0.500 2 ==> 1
+ node_18 --> node_17 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ 13 1 0.500 0 ==> 1
+ node_15 --> H014 9 1 0.333 1 ==> 2
+ 10 1 0.500 1 ==> 2
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_17 --> node_16 11 1 0.500 2 --> 1
+ node_16 --> H008 9 1 0.333 1 ==> 2
+ node_18 --> H012 11 1 0.500 2 --> 1
+ node_19 --> H007 12 1 0.333 2 ==> 1
+ node_19 --> H011 13 1 0.500 0 ==> 1
+ node_22 --> H010 5 1 1.000 2 ==> 1
+ node_22 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 38:
+
+Branch lengths and linkages for tree #38
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 21 23 2 2 2
+ 20 21 2 2 3
+ 18 20 3 3 3
+ 15 18 1 0 1
+H002 (1) 15 0 0 0
+H009 (12) 15 1 1 1
+ 17 18 0 0 1
+ 16 17 1 1 1
+H008 (4) 16 0 0 1
+H006 (13) 16 1 0 1
+H014 (5) 17 1 1 2
+ 19 20 1 0 1
+H007 (3) 19 1 1 1
+H012 (11) 19 1 1 1
+H011 (14) 19 1 1 1
+H013 (6) 21 0 0 0
+H010 (2) 23 1 1 1
+H001 (7) 23 2 2 2
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (10) 22 1 1 1
+H000 (9)* 23 0 0 0
+-------------------------------------------------------------------------
+Sum 22
+
+Tree length = 22
+Consistency index (CI) = 0.5909
+Homoplasy index (HI) = 0.4091
+CI excluding uninformative characters = 0.5500
+HI excluding uninformative characters = 0.4500
+Retention index (RI) = 0.7805
+Rescaled consistency index (RC) = 0.4612
+
+ /---------- H002
+ /-------------------15
+ | \---------- H009
+ |
+ /---------18 /---------- H008
+ | | /---------16
+ | | | \---------- H006
+ | \--------17
+ /--------20 \--------------------- H014
+ | |
+ | | /---------- H007
+ | | |
+ /---------21 \------------------------------19---------- H012
+ | | |
+ | | \---------- H011
+ | |
+ | \---------------------------------------------------- H013
+ |
+ +--------------------------------------------------------------- H010
+---------23
+ +--------------------------------------------------------------- H001
+ |
+ | /---------- H003
+ +---------------------------------------------------22
+ | \---------- H005
+ |
+ \--------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_21 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_21 --> node_20 8 1 1.000 2 ==> 1
+ 10 1 0.500 2 ==> 1
+ node_20 --> node_18 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ 13 1 0.500 0 ==> 1
+ node_18 --> node_15 9 1 0.333 2 --> 1
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_17 --> node_16 11 1 0.500 2 ==> 1
+ node_16 --> H006 9 1 0.333 2 --> 1
+ node_17 --> H014 10 1 0.500 1 ==> 2
+ node_20 --> node_19 9 1 0.333 2 --> 1
+ node_19 --> H007 12 1 0.333 2 ==> 1
+ node_19 --> H012 11 1 0.500 2 ==> 1
+ node_19 --> H011 13 1 0.500 0 ==> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+ node_23 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 39:
+
+Branch lengths and linkages for tree #39
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 22 root 0 0 0
+ 20 22 2 2 2
+ 19 20 1 1 2
+ 17 19 2 2 3
+ 16 17 2 0 2
+ 15 16 1 1 1
+H002 (1) 15 0 0 0
+H009 (12) 15 1 1 1
+H006 (13) 15 1 1 1
+H008 (4) 16 1 1 1
+H014 (5) 17 0 0 1
+ 18 19 2 1 2
+H007 (3) 18 1 1 1
+H012 (11) 18 1 1 1
+H011 (14) 18 1 1 1
+H013 (6) 20 0 0 0
+H010 (2) 22 1 1 1
+H001 (7) 22 2 2 2
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (10) 21 1 1 1
+H000 (9)* 22 0 0 0
+-------------------------------------------------------------------------
+Sum 22
+
+Tree length = 22
+Consistency index (CI) = 0.5909
+Homoplasy index (HI) = 0.4091
+CI excluding uninformative characters = 0.5500
+HI excluding uninformative characters = 0.4500
+Retention index (RI) = 0.7805
+Rescaled consistency index (RC) = 0.4612
+
+ /---------- H002
+ |
+ /---------15---------- H009
+ | |
+ /--------16 \---------- H006
+ | |
+ /---------17 \--------------------- H008
+ | |
+ | \------------------------------- H014
+ /--------19
+ | | /---------- H007
+ | | |
+ | \------------------------------18---------- H012
+ /---------20 |
+ | | \---------- H011
+ | |
+ | \---------------------------------------------------- H013
+ |
+ +--------------------------------------------------------------- H010
+ |
+---------22--------------------------------------------------------------- H001
+ |
+ | /---------- H003
+ +---------------------------------------------------21
+ | \---------- H005
+ |
+ \--------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_20 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_20 --> node_19 8 1 1.000 2 ==> 1
+ node_19 --> node_17 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_17 --> node_16 10 1 0.500 2 --> 1
+ 13 1 0.500 0 --> 1
+ node_16 --> node_15 9 1 0.500 2 ==> 1
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_15 --> H006 11 1 0.333 2 ==> 1
+ node_16 --> H008 11 1 0.333 2 ==> 1
+ node_19 --> node_18 9 1 0.500 2 ==> 1
+ 10 1 0.500 2 --> 1
+ node_18 --> H007 12 1 0.333 2 ==> 1
+ node_18 --> H012 11 1 0.333 2 ==> 1
+ node_18 --> H011 13 1 0.500 0 ==> 1
+ node_22 --> H010 5 1 1.000 2 ==> 1
+ node_22 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 40:
+
+Branch lengths and linkages for tree #40
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 22 root 0 0 0
+ 20 22 2 2 2
+ 19 20 2 2 3
+ 17 19 3 3 3
+ 15 17 1 0 1
+H002 (1) 15 0 0 0
+H009 (12) 15 1 1 1
+H006 (13) 15 1 1 1
+ 16 17 0 0 1
+H008 (4) 16 1 1 1
+H014 (5) 16 1 1 1
+ 18 19 1 0 1
+H007 (3) 18 1 1 1
+H012 (11) 18 1 1 1
+H011 (14) 18 1 1 1
+H013 (6) 20 0 0 0
+H010 (2) 22 1 1 1
+H001 (7) 22 2 2 2
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (10) 21 1 1 1
+H000 (9)* 22 0 0 0
+-------------------------------------------------------------------------
+Sum 22
+
+Tree length = 22
+Consistency index (CI) = 0.5909
+Homoplasy index (HI) = 0.4091
+CI excluding uninformative characters = 0.5500
+HI excluding uninformative characters = 0.4500
+Retention index (RI) = 0.7805
+Rescaled consistency index (RC) = 0.4612
+
+ /------------ H002
+ |
+ /----------15------------ H009
+ | |
+ | \------------ H006
+ /----------17
+ | | /------------ H008
+ | \----------16
+ | \------------ H014
+ /-----------19
+ | | /------------ H007
+ | | |
+ | \----------------------18------------ H012
+ /----------20 |
+ | | \------------ H011
+ | |
+ | \------------------------------------------------- H013
+ |
+ +------------------------------------------------------------- H010
+ |
+-----------22------------------------------------------------------------- H001
+ |
+ | /------------ H003
+ +-----------------------------------------------21
+ | \------------ H005
+ |
+ \------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_20 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_20 --> node_19 8 1 1.000 2 ==> 1
+ 10 1 0.500 2 ==> 1
+ node_19 --> node_17 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ 13 1 0.500 0 ==> 1
+ node_17 --> node_15 9 1 0.500 2 --> 1
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_15 --> H006 11 1 0.333 2 ==> 1
+ node_16 --> H008 11 1 0.333 2 ==> 1
+ node_16 --> H014 10 1 0.500 1 ==> 2
+ node_19 --> node_18 9 1 0.500 2 --> 1
+ node_18 --> H007 12 1 0.333 2 ==> 1
+ node_18 --> H012 11 1 0.333 2 ==> 1
+ node_18 --> H011 13 1 0.500 0 ==> 1
+ node_22 --> H010 5 1 1.000 2 ==> 1
+ node_22 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 41:
+
+Branch lengths and linkages for tree #41
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 21 root 0 0 0
+ 19 21 2 2 2
+ 18 19 2 2 2
+ 16 18 3 3 3
+ 15 16 1 1 1
+H002 (1) 15 0 0 0
+H009 (12) 15 1 1 1
+H006 (13) 15 1 1 1
+H008 (4) 16 1 1 1
+H014 (5) 16 1 1 1
+ 17 18 1 1 1
+H007 (3) 17 1 1 1
+H012 (11) 17 1 1 1
+H011 (14) 17 1 1 1
+H013 (6) 19 0 0 0
+H010 (2) 21 1 1 1
+H001 (7) 21 2 2 2
+ 20 21 1 1 1
+H003 (8) 20 1 1 1
+H005 (10) 20 1 1 1
+H000 (9)* 21 0 0 0
+-------------------------------------------------------------------------
+Sum 22
+
+Tree length = 22
+Consistency index (CI) = 0.5909
+Homoplasy index (HI) = 0.4091
+CI excluding uninformative characters = 0.5500
+HI excluding uninformative characters = 0.4500
+Retention index (RI) = 0.7805
+Rescaled consistency index (RC) = 0.4612
+
+ /------------ H002
+ |
+ /----------15------------ H009
+ | |
+ | \------------ H006
+ /----------16
+ | +------------------------ H008
+ | |
+ | \------------------------ H014
+ /-----------18
+ | | /------------ H007
+ | | |
+ | \----------------------17------------ H012
+ /----------19 |
+ | | \------------ H011
+ | |
+ | \------------------------------------------------- H013
+ |
+ +------------------------------------------------------------- H010
+ |
+-----------21------------------------------------------------------------- H001
+ |
+ | /------------ H003
+ +-----------------------------------------------20
+ | \------------ H005
+ |
+ \------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_19 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_19 --> node_18 8 1 1.000 2 ==> 1
+ 10 1 0.500 2 ==> 1
+ node_18 --> node_16 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ 13 1 0.500 0 ==> 1
+ node_16 --> node_15 9 1 0.500 2 ==> 1
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_15 --> H006 11 1 0.333 2 ==> 1
+ node_16 --> H008 11 1 0.333 2 ==> 1
+ node_16 --> H014 10 1 0.500 1 ==> 2
+ node_18 --> node_17 9 1 0.500 2 ==> 1
+ node_17 --> H007 12 1 0.333 2 ==> 1
+ node_17 --> H012 11 1 0.333 2 ==> 1
+ node_17 --> H011 13 1 0.500 0 ==> 1
+ node_21 --> H010 5 1 1.000 2 ==> 1
+ node_21 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_21 --> node_20 3 1 1.000 2 ==> 1
+ node_20 --> H003 4 1 1.000 2 ==> 1
+ node_20 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 42:
+
+Branch lengths and linkages for tree #42
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 21 root 0 0 0
+ 19 21 2 2 2
+ 18 19 3 3 3
+ 17 18 1 1 1
+ 16 17 3 3 3
+ 15 16 1 1 1
+H002 (1) 15 0 0 0
+H014 (5) 15 2 2 2
+H009 (12) 15 1 1 1
+H008 (4) 16 1 1 1
+H006 (13) 16 0 0 0
+H012 (11) 17 0 0 0
+H007 (3) 18 1 1 1
+H011 (14) 18 1 1 1
+H013 (6) 19 0 0 0
+H010 (2) 21 1 1 1
+H001 (7) 21 2 2 2
+ 20 21 1 1 1
+H003 (8) 20 1 1 1
+H005 (10) 20 1 1 1
+H000 (9)* 21 0 0 0
+-------------------------------------------------------------------------
+Sum 22
+
+Tree length = 22
+Consistency index (CI) = 0.5909
+Homoplasy index (HI) = 0.4091
+CI excluding uninformative characters = 0.5500
+HI excluding uninformative characters = 0.4500
+Retention index (RI) = 0.7805
+Rescaled consistency index (RC) = 0.4612
+
+ /---------- H002
+ |
+ /---------15---------- H014
+ | |
+ | \---------- H009
+ /--------16
+ | +--------------------- H008
+ | |
+ /---------17 \--------------------- H006
+ | |
+ | \------------------------------- H012
+ /--------18
+ | +------------------------------------------ H007
+ | |
+ /---------19 \------------------------------------------ H011
+ | |
+ | \---------------------------------------------------- H013
+ |
+ +--------------------------------------------------------------- H010
+ |
+---------21--------------------------------------------------------------- H001
+ |
+ | /---------- H003
+ +---------------------------------------------------20
+ | \---------- H005
+ |
+ \--------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_19 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_19 --> node_18 8 1 1.000 2 ==> 1
+ 9 1 0.333 2 ==> 1
+ 10 1 0.500 2 ==> 1
+ node_18 --> node_17 11 1 0.500 2 ==> 1
+ node_17 --> node_16 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ 13 1 0.500 0 ==> 1
+ node_16 --> node_15 11 1 0.500 1 ==> 2
+ node_15 --> H014 9 1 0.333 1 ==> 2
+ 10 1 0.500 1 ==> 2
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_16 --> H008 9 1 0.333 1 ==> 2
+ node_18 --> H007 12 1 0.333 2 ==> 1
+ node_18 --> H011 13 1 0.500 0 ==> 1
+ node_21 --> H010 5 1 1.000 2 ==> 1
+ node_21 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_21 --> node_20 3 1 1.000 2 ==> 1
+ node_20 --> H003 4 1 1.000 2 ==> 1
+ node_20 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 43:
+
+Branch lengths and linkages for tree #43
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 24 root 0 0 0
+ 22 24 2 2 3
+ 21 22 3 3 4
+ 20 21 2 1 3
+ 19 20 1 1 1
+ 18 19 0 0 1
+ 15 18 0 0 1
+H002 (1) 15 0 0 0
+H009 (12) 15 1 1 1
+ 17 18 2 2 3
+ 16 17 0 0 1
+H007 (3) 16 2 1 2
+H011 (14) 16 0 0 1
+H012 (11) 17 2 0 2
+H006 (13) 19 1 0 1
+H008 (4) 20 1 0 1
+H014 (5) 21 0 0 0
+H013 (6) 22 0 0 0
+H010 (2) 24 1 1 1
+H001 (7) 24 2 2 2
+ 23 24 1 1 1
+H003 (8) 23 1 1 1
+H005 (10) 23 1 1 1
+H000 (9)* 24 0 0 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+ /-------- H002
+ /--------------15
+ | \-------- H009
+ |
+ /------18 /-------- H007
+ | | /------16
+ | | | \-------- H011
+ /-------19 \------17
+ | | \---------------- H012
+ | |
+ /------20 \-------------------------------- H006
+ | |
+ /------21 \----------------------------------------- H008
+ | |
+ /------22 \------------------------------------------------- H014
+ | |
+ | \--------------------------------------------------------- H013
+ |
+ +----------------------------------------------------------------- H010
+ |
+-------24----------------------------------------------------------------- H001
+ |
+ | /-------- H003
+ +-------------------------------------------------------23
+ | \-------- H005
+ |
+ \----------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_24 --> node_22 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_22 --> node_21 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_21 --> node_20 10 1 1.000 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_20 --> node_19 9 1 1.000 2 ==> 1
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_18 --> node_17 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_17 --> H012 11 1 0.333 2 --> 1
+ 13 1 0.333 1 --> 0
+ node_19 --> H006 11 1 0.333 2 --> 1
+ node_20 --> H008 11 1 0.333 2 --> 1
+ node_24 --> H010 5 1 1.000 2 ==> 1
+ node_24 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_24 --> node_23 3 1 1.000 2 ==> 1
+ node_23 --> H003 4 1 1.000 2 ==> 1
+ node_23 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 44:
+
+Branch lengths and linkages for tree #44
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 24 root 0 0 0
+ 22 24 2 2 3
+ 21 22 3 3 4
+ 20 21 2 1 3
+ 15 20 1 0 1
+H002 (1) 15 0 0 0
+H009 (12) 15 1 1 1
+ 19 20 1 1 1
+ 18 19 1 0 1
+ 17 18 2 2 3
+ 16 17 1 1 1
+H007 (3) 16 2 1 2
+H011 (14) 16 0 0 1
+H012 (11) 17 1 0 1
+H006 (13) 18 0 0 0
+H008 (4) 19 0 0 1
+H014 (5) 21 0 0 0
+H013 (6) 22 0 0 0
+H010 (2) 24 1 1 1
+H001 (7) 24 2 2 2
+ 23 24 1 1 1
+H003 (8) 23 1 1 1
+H005 (10) 23 1 1 1
+H000 (9)* 24 0 0 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+ /-------- H002
+ /-------------------------------15
+ | \-------- H009
+ |
+ | /-------- H007
+ | /------16
+ /------20 | \-------- H011
+ | | /------17
+ | | | \---------------- H012
+ | | /------18
+ /------21 | | \------------------------ H006
+ | | \-------19
+ | | \-------------------------------- H008
+ /------22 |
+ | | \------------------------------------------------- H014
+ | |
+ | \--------------------------------------------------------- H013
+ |
+ +----------------------------------------------------------------- H010
+ |
+-------24----------------------------------------------------------------- H001
+ |
+ | /-------- H003
+ +-------------------------------------------------------23
+ | \-------- H005
+ |
+ \----------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_24 --> node_22 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_22 --> node_21 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_21 --> node_20 10 1 1.000 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_20 --> node_15 9 1 0.500 2 --> 1
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_20 --> node_19 11 1 0.500 2 ==> 1
+ node_19 --> node_18 9 1 0.500 2 --> 1
+ node_18 --> node_17 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_17 --> node_16 11 1 0.500 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_17 --> H012 13 1 0.333 1 --> 0
+ node_24 --> H010 5 1 1.000 2 ==> 1
+ node_24 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_24 --> node_23 3 1 1.000 2 ==> 1
+ node_23 --> H003 4 1 1.000 2 ==> 1
+ node_23 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 45:
+
+Branch lengths and linkages for tree #45
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 24 root 0 0 0
+ 22 24 2 2 3
+ 21 22 3 3 4
+ 20 21 2 1 3
+ 19 20 1 1 1
+ 15 19 0 0 1
+H002 (1) 15 0 0 0
+H009 (12) 15 1 1 1
+ 18 19 0 0 1
+ 17 18 2 2 3
+ 16 17 0 0 1
+H007 (3) 16 2 1 2
+H011 (14) 16 0 0 1
+H012 (11) 17 2 0 2
+H006 (13) 18 1 0 1
+H008 (4) 20 1 0 1
+H014 (5) 21 0 0 0
+H013 (6) 22 0 0 0
+H010 (2) 24 1 1 1
+H001 (7) 24 2 2 2
+ 23 24 1 1 1
+H003 (8) 23 1 1 1
+H005 (10) 23 1 1 1
+H000 (9)* 24 0 0 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+ /-------- H002
+ /----------------------15
+ | \-------- H009
+ |
+ | /-------- H007
+ /-------19 /------16
+ | | | \-------- H011
+ | | /------17
+ | | | \---------------- H012
+ /------20 \------18
+ | | \------------------------ H006
+ | |
+ /------21 \----------------------------------------- H008
+ | |
+ /------22 \------------------------------------------------- H014
+ | |
+ | \--------------------------------------------------------- H013
+ |
+ +----------------------------------------------------------------- H010
+ |
+-------24----------------------------------------------------------------- H001
+ |
+ | /-------- H003
+ +-------------------------------------------------------23
+ | \-------- H005
+ |
+ \----------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_24 --> node_22 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_22 --> node_21 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_21 --> node_20 10 1 1.000 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_20 --> node_19 9 1 1.000 2 ==> 1
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_18 --> node_17 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_17 --> H012 11 1 0.333 2 --> 1
+ 13 1 0.333 1 --> 0
+ node_18 --> H006 11 1 0.333 2 --> 1
+ node_20 --> H008 11 1 0.333 2 --> 1
+ node_24 --> H010 5 1 1.000 2 ==> 1
+ node_24 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_24 --> node_23 3 1 1.000 2 ==> 1
+ node_23 --> H003 4 1 1.000 2 ==> 1
+ node_23 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 46:
+
+Branch lengths and linkages for tree #46
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 21 23 2 2 3
+ 20 21 3 3 4
+ 19 20 2 2 3
+H002 (1) 19 0 0 0
+ 18 19 0 0 1
+ 16 18 2 2 3
+ 15 16 0 0 1
+H007 (3) 15 1 1 2
+H011 (14) 15 1 0 1
+H012 (11) 16 1 0 2
+ 17 18 2 0 2
+H008 (4) 17 1 1 1
+H006 (13) 17 0 0 0
+H009 (12) 19 2 1 2
+H014 (5) 20 0 0 0
+H001 (7) 21 0 0 0
+H010 (2) 23 1 1 1
+H013 (6) 23 2 2 2
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (10) 22 1 1 1
+H000 (9)* 23 0 0 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+ /------------------------------------- H002
+ |
+ | /--------- H007
+ | /-------15
+ | | \--------- H011
+ | /-------16
+ /-------19 | \------------------ H012
+ | +--------18
+ | | | /--------- H008
+ | | \----------------17
+ /-------20 | \--------- H006
+ | | |
+ | | \------------------------------------- H009
+ /-------21 |
+ | | \---------------------------------------------- H014
+ | |
+ | \------------------------------------------------------- H001
+ |
+ +---------------------------------------------------------------- H010
+ |
+--------23---------------------------------------------------------------- H013
+ |
+ | /--------- H003
+ +-----------------------------------------------------22
+ | \--------- H005
+ |
+ \---------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_21 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_21 --> node_20 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_20 --> node_19 9 1 0.500 2 ==> 1
+ 10 1 1.000 2 ==> 1
+ node_18 --> node_16 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ node_15 --> H011 13 1 0.333 0 --> 1
+ node_16 --> H012 11 1 0.500 2 --> 1
+ node_18 --> node_17 11 1 0.500 2 --> 1
+ 13 1 0.333 0 --> 1
+ node_17 --> H008 9 1 0.500 1 ==> 2
+ node_19 --> H009 12 1 0.333 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+ node_23 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 47:
+
+Branch lengths and linkages for tree #47
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 24 root 0 0 0
+ 22 24 0 0 3
+ 21 22 2 2 3
+ 20 21 3 1 4
+ 19 20 2 2 3
+H002 (1) 19 0 0 0
+ 18 19 0 0 1
+ 16 18 2 2 3
+ 15 16 0 0 1
+H007 (3) 15 1 1 2
+H011 (14) 15 1 0 1
+H012 (11) 16 1 0 2
+ 17 18 2 0 2
+H008 (4) 17 1 1 1
+H006 (13) 17 0 0 0
+H009 (12) 19 2 1 2
+H014 (5) 20 0 0 0
+H001 (7) 21 0 0 2
+H013 (6) 22 2 0 2
+H010 (2) 24 1 1 1
+ 23 24 1 1 1
+H003 (8) 23 1 1 1
+H005 (10) 23 1 1 1
+H000 (9)* 24 0 0 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+ /-------------------------------- H002
+ |
+ | /-------- H007
+ | /------15
+ | | \-------- H011
+ | /------16
+ /-------19 | \---------------- H012
+ | +------18
+ | | | /-------- H008
+ | | \--------------17
+ /------20 | \-------- H006
+ | | |
+ | | \-------------------------------- H009
+ /------21 |
+ | | \----------------------------------------- H014
+ | |
+ /------22 \------------------------------------------------- H001
+ | |
+ | \--------------------------------------------------------- H013
+ |
+ +----------------------------------------------------------------- H010
+-------24
+ | /-------- H003
+ +-------------------------------------------------------23
+ | \-------- H005
+ |
+ \----------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_21 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_21 --> node_20 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_20 --> node_19 9 1 0.500 2 ==> 1
+ 10 1 1.000 2 ==> 1
+ node_18 --> node_16 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ node_15 --> H011 13 1 0.333 0 --> 1
+ node_16 --> H012 11 1 0.500 2 --> 1
+ node_18 --> node_17 11 1 0.500 2 --> 1
+ 13 1 0.333 0 --> 1
+ node_17 --> H008 9 1 0.500 1 ==> 2
+ node_19 --> H009 12 1 0.333 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_22 --> H013 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ node_24 --> H010 5 1 1.000 2 ==> 1
+ node_24 --> node_23 3 1 1.000 2 ==> 1
+ node_23 --> H003 4 1 1.000 2 ==> 1
+ node_23 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 48:
+
+Branch lengths and linkages for tree #48
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 22 root 0 0 0
+ 20 22 2 2 3
+ 19 20 3 3 4
+ 18 19 2 1 3
+ 17 18 1 1 1
+ 16 17 0 0 1
+H002 (1) 16 0 0 0
+ 15 16 2 2 3
+H007 (3) 15 2 1 2
+H012 (11) 15 2 1 2
+H011 (14) 15 0 0 1
+H009 (12) 16 1 1 1
+H006 (13) 17 1 0 1
+H008 (4) 18 1 0 1
+H014 (5) 19 0 0 0
+H013 (6) 20 0 0 0
+H010 (2) 22 1 1 1
+H001 (7) 22 2 2 2
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (10) 21 1 1 1
+H000 (9)* 22 0 0 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+ /------------------ H002
+ |
+ | /--------- H007
+ | |
+ /-------16-------15--------- H012
+ | | |
+ | | \--------- H011
+ /--------17 |
+ | | \------------------ H009
+ | |
+ /-------18 \--------------------------- H006
+ | |
+ /-------19 \------------------------------------- H008
+ | |
+ /-------20 \---------------------------------------------- H014
+ | |
+ | \------------------------------------------------------- H013
+ |
+ +---------------------------------------------------------------- H010
+ |
+--------22---------------------------------------------------------------- H001
+ |
+ | /--------- H003
+ +-----------------------------------------------------21
+ | \--------- H005
+ |
+ \---------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_20 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_20 --> node_19 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_19 --> node_18 10 1 1.000 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_18 --> node_17 9 1 1.000 2 ==> 1
+ node_16 --> node_15 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_15 --> H012 11 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_16 --> H009 12 1 0.333 2 ==> 1
+ node_17 --> H006 11 1 0.333 2 --> 1
+ node_18 --> H008 11 1 0.333 2 --> 1
+ node_22 --> H010 5 1 1.000 2 ==> 1
+ node_22 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 49:
+
+Branch lengths and linkages for tree #49
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 24 root 0 0 0
+ 22 24 2 2 3
+ 21 22 3 3 4
+ 20 21 1 1 3
+ 18 20 1 0 1
+H002 (1) 18 0 0 0
+ 17 18 0 0 1
+ 16 17 2 2 3
+H007 (3) 16 1 0 2
+ 15 16 0 0 1
+H012 (11) 15 1 1 2
+H011 (14) 15 1 0 1
+H009 (12) 17 2 0 2
+ 19 20 2 1 2
+H008 (4) 19 0 0 1
+H006 (13) 19 1 0 1
+H014 (5) 21 0 0 0
+H001 (7) 22 0 0 0
+H010 (2) 24 1 1 1
+H013 (6) 24 2 2 2
+ 23 24 1 1 1
+H003 (8) 23 1 1 1
+H005 (10) 23 1 1 1
+H000 (9)* 24 0 0 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+ /-------------------------------- H002
+ |
+ | /---------------- H007
+ /-------18 |
+ | | /------16 /-------- H012
+ | | | \------15
+ | \------17 \-------- H011
+ /------20 |
+ | | \------------------------ H009
+ | |
+ | | /-------- H008
+ /------21 \-------------------------------19
+ | | \-------- H006
+ | |
+ /------22 \------------------------------------------------- H014
+ | |
+ | \--------------------------------------------------------- H001
+ |
+ +----------------------------------------------------------------- H010
+ |
+-------24----------------------------------------------------------------- H013
+ |
+ | /-------- H003
+ +-------------------------------------------------------23
+ | \-------- H005
+ |
+ \----------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_24 --> node_22 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_22 --> node_21 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_21 --> node_20 10 1 1.000 2 ==> 1
+ node_20 --> node_18 9 1 0.500 2 --> 1
+ node_17 --> node_16 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 --> 1
+ node_15 --> H012 11 1 0.500 2 ==> 1
+ node_15 --> H011 13 1 0.333 0 --> 1
+ node_17 --> H009 12 1 0.333 2 --> 1
+ 13 1 0.333 0 --> 1
+ node_20 --> node_19 11 1 0.500 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_19 --> H006 9 1 0.500 2 --> 1
+ node_24 --> H010 5 1 1.000 2 ==> 1
+ node_24 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ node_24 --> node_23 3 1 1.000 2 ==> 1
+ node_23 --> H003 4 1 1.000 2 ==> 1
+ node_23 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 50:
+
+Branch lengths and linkages for tree #50
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 21 23 2 2 2
+ 20 21 3 3 3
+ 19 20 0 0 1
+ 18 19 3 3 3
+ 17 18 0 0 1
+H002 (1) 17 0 0 0
+ 16 17 0 0 1
+ 15 16 1 1 1
+H008 (4) 15 1 0 1
+H006 (13) 15 0 0 1
+H014 (5) 16 2 1 2
+H009 (12) 18 1 0 1
+H007 (3) 19 1 0 1
+H012 (11) 20 1 1 1
+H011 (14) 20 1 1 1
+H013 (6) 21 0 0 0
+H010 (2) 23 1 1 1
+H001 (7) 23 2 2 2
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (10) 22 1 1 1
+H000 (9)* 23 0 0 0
+-------------------------------------------------------------------------
+Sum 22
+
+Tree length = 22
+Consistency index (CI) = 0.5909
+Homoplasy index (HI) = 0.4091
+CI excluding uninformative characters = 0.5500
+HI excluding uninformative characters = 0.4500
+Retention index (RI) = 0.7805
+Rescaled consistency index (RC) = 0.4612
+
+ /------------------------ H002
+ |
+ | /-------- H008
+ /------17 /------15
+ | | | \-------- H006
+ | \------16
+ /-------18 \---------------- H014
+ | |
+ /------19 \-------------------------------- H009
+ | |
+ | \----------------------------------------- H007
+ /------20
+ | +------------------------------------------------- H012
+ | |
+ /------21 \------------------------------------------------- H011
+ | |
+ | \--------------------------------------------------------- H013
+ |
+ +----------------------------------------------------------------- H010
+ |
+-------23----------------------------------------------------------------- H001
+ |
+ | /-------- H003
+ +-------------------------------------------------------22
+ | \-------- H005
+ |
+ \----------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_21 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_21 --> node_20 8 1 1.000 2 ==> 1
+ 9 1 0.333 2 ==> 1
+ 10 1 0.500 2 ==> 1
+ node_19 --> node_18 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ 13 1 0.500 0 ==> 1
+ node_16 --> node_15 11 1 0.500 2 ==> 1
+ node_15 --> H008 9 1 0.333 1 --> 2
+ node_16 --> H014 9 1 0.333 1 --> 2
+ 10 1 0.500 1 ==> 2
+ node_18 --> H009 12 1 0.333 2 --> 1
+ node_19 --> H007 12 1 0.333 2 --> 1
+ node_20 --> H012 11 1 0.500 2 ==> 1
+ node_20 --> H011 13 1 0.500 0 ==> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+ node_23 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 51:
+
+Branch lengths and linkages for tree #51
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 25 root 0 0 0
+ 23 25 0 0 3
+ 22 23 2 2 3
+ 21 22 3 1 4
+ 20 21 1 1 3
+ 18 20 1 0 1
+H002 (1) 18 0 0 0
+ 17 18 0 0 1
+ 16 17 2 2 3
+H007 (3) 16 1 0 2
+ 15 16 0 0 1
+H012 (11) 15 1 1 2
+H011 (14) 15 1 0 1
+H009 (12) 17 2 0 2
+ 19 20 2 1 2
+H008 (4) 19 0 0 1
+H006 (13) 19 1 0 1
+H014 (5) 21 0 0 0
+H001 (7) 22 0 0 2
+H013 (6) 23 2 0 2
+H010 (2) 25 1 1 1
+ 24 25 1 1 1
+H003 (8) 24 1 1 1
+H005 (10) 24 1 1 1
+H000 (9)* 25 0 0 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+ /----------------------------- H002
+ |
+ | /--------------- H007
+ /-----18 |
+ | | /-----16 /------- H012
+ | | | \------15
+ | \-----17 \------- H011
+ /------20 |
+ | | \---------------------- H009
+ | |
+ | | /------- H008
+ /-----21 \---------------------------19
+ | | \------- H006
+ | |
+ /-----22 \-------------------------------------------- H014
+ | |
+ /------23 \--------------------------------------------------- H001
+ | |
+ | \---------------------------------------------------------- H013
+ |
+ +------------------------------------------------------------------ H010
+------25
+ | /------- H003
+ +---------------------------------------------------------24
+ | \------- H005
+ |
+ \------------------------------------------------------------------ H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_22 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_22 --> node_21 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_21 --> node_20 10 1 1.000 2 ==> 1
+ node_20 --> node_18 9 1 0.500 2 --> 1
+ node_17 --> node_16 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 --> 1
+ node_15 --> H012 11 1 0.500 2 ==> 1
+ node_15 --> H011 13 1 0.333 0 --> 1
+ node_17 --> H009 12 1 0.333 2 --> 1
+ 13 1 0.333 0 --> 1
+ node_20 --> node_19 11 1 0.500 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_19 --> H006 9 1 0.500 2 --> 1
+ node_23 --> H013 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ node_25 --> H010 5 1 1.000 2 ==> 1
+ node_25 --> node_24 3 1 1.000 2 ==> 1
+ node_24 --> H003 4 1 1.000 2 ==> 1
+ node_24 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 52:
+
+Branch lengths and linkages for tree #52
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 21 23 2 2 2
+ 20 21 3 3 3
+ 19 20 0 0 1
+ 18 19 3 3 3
+ 17 18 0 0 1
+H002 (1) 17 0 0 0
+ 16 17 0 0 1
+ 15 16 1 1 1
+H008 (4) 15 1 0 1
+H014 (5) 15 1 1 2
+H006 (13) 16 1 0 1
+H009 (12) 18 1 0 1
+H007 (3) 19 1 0 1
+H012 (11) 20 1 1 1
+H011 (14) 20 1 1 1
+H013 (6) 21 0 0 0
+H010 (2) 23 1 1 1
+H001 (7) 23 2 2 2
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (10) 22 1 1 1
+H000 (9)* 23 0 0 0
+-------------------------------------------------------------------------
+Sum 22
+
+Tree length = 22
+Consistency index (CI) = 0.5909
+Homoplasy index (HI) = 0.4091
+CI excluding uninformative characters = 0.5500
+HI excluding uninformative characters = 0.4500
+Retention index (RI) = 0.7805
+Rescaled consistency index (RC) = 0.4612
+
+ /------------------------ H002
+ |
+ | /-------- H008
+ /------17 /------15
+ | | | \-------- H014
+ | \------16
+ /-------18 \---------------- H006
+ | |
+ /------19 \-------------------------------- H009
+ | |
+ | \----------------------------------------- H007
+ /------20
+ | +------------------------------------------------- H012
+ | |
+ /------21 \------------------------------------------------- H011
+ | |
+ | \--------------------------------------------------------- H013
+ |
+ +----------------------------------------------------------------- H010
+ |
+-------23----------------------------------------------------------------- H001
+ |
+ | /-------- H003
+ +-------------------------------------------------------22
+ | \-------- H005
+ |
+ \----------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_21 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_21 --> node_20 8 1 1.000 2 ==> 1
+ 9 1 0.500 2 ==> 1
+ 10 1 0.500 2 ==> 1
+ node_19 --> node_18 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ 13 1 0.500 0 ==> 1
+ node_16 --> node_15 9 1 0.500 1 ==> 2
+ node_15 --> H008 11 1 0.333 2 --> 1
+ node_15 --> H014 10 1 0.500 1 ==> 2
+ node_16 --> H006 11 1 0.333 2 --> 1
+ node_18 --> H009 12 1 0.333 2 --> 1
+ node_19 --> H007 12 1 0.333 2 --> 1
+ node_20 --> H012 11 1 0.333 2 ==> 1
+ node_20 --> H011 13 1 0.500 0 ==> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+ node_23 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 53:
+
+Branch lengths and linkages for tree #53
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 24 root 0 0 0
+ 22 24 2 2 3
+ 21 22 3 3 4
+ 20 21 2 1 3
+ 19 20 1 1 1
+ 18 19 0 0 1
+H002 (1) 18 0 0 0
+ 17 18 0 0 1
+ 16 17 2 2 3
+H007 (3) 16 2 0 2
+ 15 16 0 0 1
+H012 (11) 15 2 1 2
+H011 (14) 15 0 0 1
+H009 (12) 17 1 0 1
+H006 (13) 19 1 0 1
+H008 (4) 20 1 0 1
+H014 (5) 21 0 0 0
+H001 (7) 22 0 0 0
+H010 (2) 24 1 1 1
+H013 (6) 24 2 2 2
+ 23 24 1 1 1
+H003 (8) 23 1 1 1
+H005 (10) 23 1 1 1
+H000 (9)* 24 0 0 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+ /----------------------------- H002
+ |
+ | /--------------- H007
+ /-----18 |
+ | | /-----16 /------- H012
+ | | | \------15
+ | \-----17 \------- H011
+ /------19 |
+ | | \---------------------- H009
+ | |
+ /-----20 \------------------------------------ H006
+ | |
+ /-----21 \-------------------------------------------- H008
+ | |
+ /------22 \--------------------------------------------------- H014
+ | |
+ | \---------------------------------------------------------- H001
+ |
+ +------------------------------------------------------------------ H010
+ |
+------24------------------------------------------------------------------ H013
+ |
+ | /------- H003
+ +---------------------------------------------------------23
+ | \------- H005
+ |
+ \------------------------------------------------------------------ H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_24 --> node_22 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_22 --> node_21 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_21 --> node_20 10 1 1.000 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_20 --> node_19 9 1 1.000 2 ==> 1
+ node_17 --> node_16 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 --> 1
+ 13 1 0.333 1 --> 0
+ node_15 --> H012 11 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_17 --> H009 12 1 0.333 2 --> 1
+ node_19 --> H006 11 1 0.333 2 --> 1
+ node_20 --> H008 11 1 0.333 2 --> 1
+ node_24 --> H010 5 1 1.000 2 ==> 1
+ node_24 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ node_24 --> node_23 3 1 1.000 2 ==> 1
+ node_23 --> H003 4 1 1.000 2 ==> 1
+ node_23 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 54:
+
+Branch lengths and linkages for tree #54
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 21 23 2 2 3
+ 20 21 3 3 4
+ 19 20 2 1 3
+ 18 19 1 1 1
+ 15 18 0 0 1
+H002 (1) 15 0 0 0
+H009 (12) 15 1 1 1
+ 17 18 2 2 3
+ 16 17 0 0 1
+H007 (3) 16 2 1 2
+H011 (14) 16 0 0 1
+H012 (11) 17 2 0 2
+H006 (13) 18 1 0 1
+H008 (4) 19 1 0 1
+H014 (5) 20 0 0 0
+H013 (6) 21 0 0 0
+H010 (2) 23 1 1 1
+H001 (7) 23 2 2 2
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (10) 22 1 1 1
+H000 (9)* 23 0 0 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+ /--------- H002
+ /----------------15
+ | \--------- H009
+ |
+ | /--------- H007
+ | /-------16
+ /--------18 | \--------- H011
+ | +-------17
+ | | \------------------ H012
+ /-------19 |
+ | | \--------------------------- H006
+ | |
+ /-------20 \------------------------------------- H008
+ | |
+ /-------21 \---------------------------------------------- H014
+ | |
+ | \------------------------------------------------------- H013
+ |
+ +---------------------------------------------------------------- H010
+ |
+--------23---------------------------------------------------------------- H001
+ |
+ | /--------- H003
+ +-----------------------------------------------------22
+ | \--------- H005
+ |
+ \---------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_21 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_21 --> node_20 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_20 --> node_19 10 1 1.000 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_19 --> node_18 9 1 1.000 2 ==> 1
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_18 --> node_17 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_17 --> H012 11 1 0.333 2 --> 1
+ 13 1 0.333 1 --> 0
+ node_18 --> H006 11 1 0.333 2 --> 1
+ node_19 --> H008 11 1 0.333 2 --> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+ node_23 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 55:
+
+Branch lengths and linkages for tree #55
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 25 root 0 0 0
+ 23 25 0 0 3
+ 22 23 2 2 3
+ 21 22 3 1 4
+ 20 21 2 1 3
+ 19 20 1 1 1
+ 18 19 0 0 1
+H002 (1) 18 0 0 0
+ 17 18 0 0 1
+ 16 17 2 2 3
+H007 (3) 16 2 0 2
+ 15 16 0 0 1
+H012 (11) 15 2 1 2
+H011 (14) 15 0 0 1
+H009 (12) 17 1 0 1
+H006 (13) 19 1 0 1
+H008 (4) 20 1 0 1
+H014 (5) 21 0 0 0
+H013 (6) 22 0 0 2
+H001 (7) 23 2 0 2
+H010 (2) 25 1 1 1
+ 24 25 1 1 1
+H003 (8) 24 1 1 1
+H005 (10) 24 1 1 1
+H000 (9)* 25 0 0 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+ /--------------------------- H002
+ |
+ | /------------- H007
+ /----18 |
+ | | /-----16 /------- H012
+ | | | \----15
+ | \-----17 \------- H011
+ /-----19 |
+ | | \-------------------- H009
+ | |
+ /----20 \--------------------------------- H006
+ | |
+ /-----21 \---------------------------------------- H008
+ | |
+ /-----22 \---------------------------------------------- H014
+ | |
+ /----23 \----------------------------------------------------- H013
+ | |
+ | \------------------------------------------------------------ H001
+ |
+ +------------------------------------------------------------------ H010
+------25
+ | /------- H003
+ +---------------------------------------------------------24
+ | \------- H005
+ |
+ \------------------------------------------------------------------ H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_22 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_22 --> node_21 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_21 --> node_20 10 1 1.000 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_20 --> node_19 9 1 1.000 2 ==> 1
+ node_17 --> node_16 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 --> 1
+ 13 1 0.333 1 --> 0
+ node_15 --> H012 11 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_17 --> H009 12 1 0.333 2 --> 1
+ node_19 --> H006 11 1 0.333 2 --> 1
+ node_20 --> H008 11 1 0.333 2 --> 1
+ node_23 --> H001 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ node_25 --> H010 5 1 1.000 2 ==> 1
+ node_25 --> node_24 3 1 1.000 2 ==> 1
+ node_24 --> H003 4 1 1.000 2 ==> 1
+ node_24 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 56:
+
+Branch lengths and linkages for tree #56
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 25 root 0 0 0
+ 23 25 0 0 3
+ 22 23 2 2 3
+ 21 22 3 1 4
+ 20 21 2 1 3
+ 19 20 1 1 1
+ 18 19 0 0 1
+H002 (1) 18 0 0 0
+ 17 18 0 0 1
+ 16 17 2 2 3
+H007 (3) 16 2 0 2
+ 15 16 0 0 1
+H012 (11) 15 2 1 2
+H011 (14) 15 0 0 1
+H009 (12) 17 1 0 1
+H006 (13) 19 1 0 1
+H008 (4) 20 1 0 1
+H014 (5) 21 0 0 0
+H001 (7) 22 0 0 2
+H013 (6) 23 2 0 2
+H010 (2) 25 1 1 1
+ 24 25 1 1 1
+H003 (8) 24 1 1 1
+H005 (10) 24 1 1 1
+H000 (9)* 25 0 0 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+ /--------------------------- H002
+ |
+ | /------------- H007
+ /----18 |
+ | | /-----16 /------- H012
+ | | | \----15
+ | \-----17 \------- H011
+ /-----19 |
+ | | \-------------------- H009
+ | |
+ /----20 \--------------------------------- H006
+ | |
+ /-----21 \---------------------------------------- H008
+ | |
+ /-----22 \---------------------------------------------- H014
+ | |
+ /----23 \----------------------------------------------------- H001
+ | |
+ | \------------------------------------------------------------ H013
+ |
+ +------------------------------------------------------------------ H010
+------25
+ | /------- H003
+ +---------------------------------------------------------24
+ | \------- H005
+ |
+ \------------------------------------------------------------------ H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_22 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_22 --> node_21 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_21 --> node_20 10 1 1.000 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_20 --> node_19 9 1 1.000 2 ==> 1
+ node_17 --> node_16 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 --> 1
+ 13 1 0.333 1 --> 0
+ node_15 --> H012 11 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_17 --> H009 12 1 0.333 2 --> 1
+ node_19 --> H006 11 1 0.333 2 --> 1
+ node_20 --> H008 11 1 0.333 2 --> 1
+ node_23 --> H013 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ node_25 --> H010 5 1 1.000 2 ==> 1
+ node_25 --> node_24 3 1 1.000 2 ==> 1
+ node_24 --> H003 4 1 1.000 2 ==> 1
+ node_24 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 57:
+
+Branch lengths and linkages for tree #57
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 21 23 2 2 2
+ 20 21 3 3 3
+ 19 20 1 1 1
+ 18 19 3 3 3
+ 17 18 0 0 1
+ 16 17 1 1 1
+ 15 16 0 0 1
+H002 (1) 15 0 0 0
+H009 (12) 15 1 1 1
+H014 (5) 16 2 1 2
+H008 (4) 17 1 0 1
+H006 (13) 18 0 0 0
+H012 (11) 19 0 0 0
+H007 (3) 20 1 1 1
+H011 (14) 20 1 1 1
+H013 (6) 21 0 0 0
+H010 (2) 23 1 1 1
+H001 (7) 23 2 2 2
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (10) 22 1 1 1
+H000 (9)* 23 0 0 0
+-------------------------------------------------------------------------
+Sum 22
+
+Tree length = 22
+Consistency index (CI) = 0.5909
+Homoplasy index (HI) = 0.4091
+CI excluding uninformative characters = 0.5500
+HI excluding uninformative characters = 0.4500
+Retention index (RI) = 0.7805
+Rescaled consistency index (RC) = 0.4612
+
+ /-------- H002
+ /------15
+ | \-------- H009
+ /------16
+ | \---------------- H014
+ /------17
+ | \------------------------ H008
+ /-------18
+ | \-------------------------------- H006
+ /------19
+ | \----------------------------------------- H012
+ |
+ /------20------------------------------------------------- H007
+ | |
+ /------21 \------------------------------------------------- H011
+ | |
+ | \--------------------------------------------------------- H013
+ |
+ +----------------------------------------------------------------- H010
+ |
+-------23----------------------------------------------------------------- H001
+ |
+ | /-------- H003
+ +-------------------------------------------------------22
+ | \-------- H005
+ |
+ \----------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_21 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_21 --> node_20 8 1 1.000 2 ==> 1
+ 9 1 0.333 2 ==> 1
+ 10 1 0.500 2 ==> 1
+ node_20 --> node_19 11 1 0.500 2 ==> 1
+ node_19 --> node_18 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ 13 1 0.500 0 ==> 1
+ node_17 --> node_16 11 1 0.500 1 ==> 2
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_16 --> H014 9 1 0.333 1 --> 2
+ 10 1 0.500 1 ==> 2
+ node_17 --> H008 9 1 0.333 1 --> 2
+ node_20 --> H007 12 1 0.333 2 ==> 1
+ node_20 --> H011 13 1 0.500 0 ==> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+ node_23 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 58:
+
+Branch lengths and linkages for tree #58
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 20 root 0 0 0
+ 18 20 2 2 2
+ 17 18 3 3 3
+ 16 17 3 3 3
+H002 (1) 16 0 0 0
+ 15 16 1 1 1
+H008 (4) 15 1 1 1
+H014 (5) 15 1 1 1
+H009 (12) 16 1 1 1
+H006 (13) 16 1 1 1
+H007 (3) 17 1 1 1
+H012 (11) 17 1 1 1
+H011 (14) 17 1 1 1
+H013 (6) 18 0 0 0
+H010 (2) 20 1 1 1
+H001 (7) 20 2 2 2
+ 19 20 1 1 1
+H003 (8) 19 1 1 1
+H005 (10) 19 1 1 1
+H000 (9)* 20 0 0 0
+-------------------------------------------------------------------------
+Sum 22
+
+Tree length = 22
+Consistency index (CI) = 0.5909
+Homoplasy index (HI) = 0.4091
+CI excluding uninformative characters = 0.5500
+HI excluding uninformative characters = 0.4500
+Retention index (RI) = 0.7805
+Rescaled consistency index (RC) = 0.4612
+
+ /------------------------ H002
+ |
+ | /------------ H008
+ +----------15
+ /----------16 \------------ H014
+ | |
+ | +------------------------ H009
+ | |
+ | \------------------------ H006
+ /-----------17
+ | +------------------------------------ H007
+ | |
+ | +------------------------------------ H012
+ /----------18 |
+ | | \------------------------------------ H011
+ | |
+ | \------------------------------------------------- H013
+ |
+ +------------------------------------------------------------- H010
+ |
+-----------20------------------------------------------------------------- H001
+ |
+ | /------------ H003
+ +-----------------------------------------------19
+ | \------------ H005
+ |
+ \------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_20 --> node_18 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_18 --> node_17 8 1 1.000 2 ==> 1
+ 9 1 0.500 2 ==> 1
+ 10 1 0.500 2 ==> 1
+ node_17 --> node_16 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ 13 1 0.500 0 ==> 1
+ node_16 --> node_15 9 1 0.500 1 ==> 2
+ node_15 --> H008 11 1 0.333 2 ==> 1
+ node_15 --> H014 10 1 0.500 1 ==> 2
+ node_16 --> H009 12 1 0.333 2 ==> 1
+ node_16 --> H006 11 1 0.333 2 ==> 1
+ node_17 --> H007 12 1 0.333 2 ==> 1
+ node_17 --> H012 11 1 0.333 2 ==> 1
+ node_17 --> H011 13 1 0.500 0 ==> 1
+ node_20 --> H010 5 1 1.000 2 ==> 1
+ node_20 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_20 --> node_19 3 1 1.000 2 ==> 1
+ node_19 --> H003 4 1 1.000 2 ==> 1
+ node_19 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 59:
+
+Branch lengths and linkages for tree #59
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 22 root 0 0 0
+ 20 22 2 2 3
+ 19 20 3 3 4
+ 18 19 1 1 3
+ 16 18 1 0 1
+H002 (1) 16 0 0 0
+ 15 16 2 2 3
+H007 (3) 15 1 1 2
+H012 (11) 15 1 1 2
+H011 (14) 15 1 0 1
+H009 (12) 16 2 1 2
+ 17 18 2 1 2
+H008 (4) 17 0 0 1
+H006 (13) 17 1 0 1
+H014 (5) 19 0 0 0
+H001 (7) 20 0 0 0
+H010 (2) 22 1 1 1
+H013 (6) 22 2 2 2
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (10) 21 1 1 1
+H000 (9)* 22 0 0 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+ /--------------------- H002
+ |
+ | /---------- H007
+ | |
+ /--------16---------15---------- H012
+ | | |
+ | | \---------- H011
+ | |
+ /---------18 \--------------------- H009
+ | |
+ | | /---------- H008
+ /--------19 \-------------------17
+ | | \---------- H006
+ | |
+ /---------20 \------------------------------------------ H014
+ | |
+ | \---------------------------------------------------- H001
+ |
+ +--------------------------------------------------------------- H010
+ |
+---------22--------------------------------------------------------------- H013
+ |
+ | /---------- H003
+ +---------------------------------------------------21
+ | \---------- H005
+ |
+ \--------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_20 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_20 --> node_19 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_19 --> node_18 10 1 1.000 2 ==> 1
+ node_18 --> node_16 9 1 0.500 2 --> 1
+ node_16 --> node_15 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ node_15 --> H012 11 1 0.500 2 ==> 1
+ node_15 --> H011 13 1 0.333 0 --> 1
+ node_16 --> H009 12 1 0.333 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_18 --> node_17 11 1 0.500 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_17 --> H006 9 1 0.500 2 --> 1
+ node_22 --> H010 5 1 1.000 2 ==> 1
+ node_22 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 60:
+
+Branch lengths and linkages for tree #60
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 21 23 2 2 3
+ 20 21 3 3 4
+ 19 20 2 1 2
+ 18 19 1 1 1
+H002 (1) 18 0 0 0
+ 17 18 0 0 1
+ 16 17 2 2 3
+H007 (3) 16 2 0 2
+ 15 16 0 0 1
+H012 (11) 15 2 1 2
+H011 (14) 15 0 0 1
+H009 (12) 17 1 0 1
+H006 (13) 18 1 1 1
+H008 (4) 19 1 1 1
+H014 (5) 20 0 0 0
+H001 (7) 21 0 0 0
+H010 (2) 23 1 1 1
+H013 (6) 23 2 2 2
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (10) 22 1 1 1
+H000 (9)* 23 0 0 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+ /-------------------------------- H002
+ |
+ | /---------------- H007
+ | |
+ | /------16 /-------- H012
+ /-------18 | \------15
+ | +------17 \-------- H011
+ | | |
+ | | \------------------------ H009
+ /------19 |
+ | | \-------------------------------- H006
+ | |
+ /------20 \----------------------------------------- H008
+ | |
+ /------21 \------------------------------------------------- H014
+ | |
+ | \--------------------------------------------------------- H001
+ |
+ +----------------------------------------------------------------- H010
+ |
+-------23----------------------------------------------------------------- H013
+ |
+ | /-------- H003
+ +-------------------------------------------------------22
+ | \-------- H005
+ |
+ \----------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_21 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_21 --> node_20 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_20 --> node_19 10 1 1.000 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_19 --> node_18 9 1 1.000 2 ==> 1
+ node_17 --> node_16 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 --> 1
+ 13 1 0.333 1 --> 0
+ node_15 --> H012 11 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_17 --> H009 12 1 0.333 2 --> 1
+ node_18 --> H006 11 1 0.333 2 ==> 1
+ node_19 --> H008 11 1 0.333 2 ==> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+ node_23 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 61:
+
+Branch lengths and linkages for tree #61
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 22 root 0 0 0
+ 20 22 2 2 3
+ 19 20 3 3 4
+ 18 19 3 2 3
+H002 (1) 18 0 0 0
+ 17 18 1 1 1
+ 16 17 2 2 3
+ 15 16 1 1 1
+H007 (3) 15 2 1 2
+H011 (14) 15 0 0 1
+H012 (11) 16 1 0 1
+H008 (4) 17 1 1 1
+H006 (13) 17 0 0 0
+H009 (12) 18 1 1 1
+H014 (5) 19 0 0 0
+H001 (7) 20 0 0 0
+H010 (2) 22 1 1 1
+H013 (6) 22 2 2 2
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (10) 21 1 1 1
+H000 (9)* 22 0 0 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+ /------------------------------------- H002
+ |
+ | /--------- H007
+ | /-------15
+ | | \--------- H011
+ | /-------16
+ /-------18 | \------------------ H012
+ | | |
+ | +--------17--------------------------- H008
+ | | |
+ /-------19 | \--------------------------- H006
+ | | |
+ | | \------------------------------------- H009
+ /-------20 |
+ | | \---------------------------------------------- H014
+ | |
+ | \------------------------------------------------------- H001
+ |
+ +---------------------------------------------------------------- H010
+ |
+--------22---------------------------------------------------------------- H013
+ |
+ | /--------- H003
+ +-----------------------------------------------------21
+ | \--------- H005
+ |
+ \---------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_20 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_20 --> node_19 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_19 --> node_18 9 1 0.500 2 ==> 1
+ 10 1 1.000 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_18 --> node_17 11 1 0.500 2 ==> 1
+ node_17 --> node_16 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_16 --> node_15 11 1 0.500 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_16 --> H012 13 1 0.333 1 --> 0
+ node_17 --> H008 9 1 0.500 1 ==> 2
+ node_18 --> H009 12 1 0.333 2 ==> 1
+ node_22 --> H010 5 1 1.000 2 ==> 1
+ node_22 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 62:
+
+Branch lengths and linkages for tree #62
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 21 23 0 0 3
+ 20 21 2 2 3
+ 19 20 3 1 4
+ 18 19 3 2 3
+H002 (1) 18 0 0 0
+ 17 18 1 1 1
+ 16 17 2 2 3
+ 15 16 1 1 1
+H007 (3) 15 2 1 2
+H011 (14) 15 0 0 1
+H012 (11) 16 1 0 1
+H008 (4) 17 1 1 1
+H006 (13) 17 0 0 0
+H009 (12) 18 1 1 1
+H014 (5) 19 0 0 0
+H001 (7) 20 0 0 2
+H013 (6) 21 2 0 2
+H010 (2) 23 1 1 1
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (10) 22 1 1 1
+H000 (9)* 23 0 0 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+ /-------------------------------- H002
+ |
+ | /-------- H007
+ | /------15
+ | | \-------- H011
+ | /------16
+ /-------18 | \---------------- H012
+ | | |
+ | +------17------------------------ H008
+ | | |
+ /------19 | \------------------------ H006
+ | | |
+ | | \-------------------------------- H009
+ /------20 |
+ | | \----------------------------------------- H014
+ | |
+ /------21 \------------------------------------------------- H001
+ | |
+ | \--------------------------------------------------------- H013
+ |
+ +----------------------------------------------------------------- H010
+-------23
+ | /-------- H003
+ +-------------------------------------------------------22
+ | \-------- H005
+ |
+ \----------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_20 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_20 --> node_19 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_19 --> node_18 9 1 0.500 2 ==> 1
+ 10 1 1.000 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_18 --> node_17 11 1 0.500 2 ==> 1
+ node_17 --> node_16 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_16 --> node_15 11 1 0.500 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_16 --> H012 13 1 0.333 1 --> 0
+ node_17 --> H008 9 1 0.500 1 ==> 2
+ node_18 --> H009 12 1 0.333 2 ==> 1
+ node_21 --> H013 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 63:
+
+Branch lengths and linkages for tree #63
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 21 23 0 0 3
+ 20 21 2 2 3
+ 19 20 3 1 4
+ 18 19 1 1 3
+ 16 18 1 0 1
+H002 (1) 16 0 0 0
+ 15 16 2 2 3
+H007 (3) 15 1 1 2
+H012 (11) 15 1 1 2
+H011 (14) 15 1 0 1
+H009 (12) 16 2 1 2
+ 17 18 2 1 2
+H008 (4) 17 0 0 1
+H006 (13) 17 1 0 1
+H014 (5) 19 0 0 0
+H001 (7) 20 0 0 2
+H013 (6) 21 2 0 2
+H010 (2) 23 1 1 1
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (10) 22 1 1 1
+H000 (9)* 23 0 0 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+ /------------------ H002
+ |
+ | /--------- H007
+ | |
+ /-------16-------15--------- H012
+ | | |
+ | | \--------- H011
+ | |
+ /--------18 \------------------ H009
+ | |
+ | | /--------- H008
+ /-------19 \----------------17
+ | | \--------- H006
+ | |
+ /-------20 \------------------------------------- H014
+ | |
+ /-------21 \---------------------------------------------- H001
+ | |
+ | \------------------------------------------------------- H013
+ |
+ +---------------------------------------------------------------- H010
+--------23
+ | /--------- H003
+ +-----------------------------------------------------22
+ | \--------- H005
+ |
+ \---------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_20 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_20 --> node_19 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_19 --> node_18 10 1 1.000 2 ==> 1
+ node_18 --> node_16 9 1 0.500 2 --> 1
+ node_16 --> node_15 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ node_15 --> H012 11 1 0.500 2 ==> 1
+ node_15 --> H011 13 1 0.333 0 --> 1
+ node_16 --> H009 12 1 0.333 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_18 --> node_17 11 1 0.500 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_17 --> H006 9 1 0.500 2 --> 1
+ node_21 --> H013 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 64:
+
+Branch lengths and linkages for tree #64
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 22 root 0 0 0
+ 20 22 0 0 3
+ 19 20 2 2 3
+ 18 19 3 1 4
+ 17 18 2 1 2
+ 16 17 1 1 1
+H002 (1) 16 0 0 0
+ 15 16 2 2 3
+H007 (3) 15 2 1 2
+H012 (11) 15 2 1 2
+H011 (14) 15 0 0 1
+H009 (12) 16 1 1 1
+H006 (13) 16 1 1 1
+H008 (4) 17 1 1 1
+H014 (5) 18 0 0 0
+H001 (7) 19 0 0 2
+H013 (6) 20 2 0 2
+H010 (2) 22 1 1 1
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (10) 21 1 1 1
+H000 (9)* 22 0 0 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+ /------------------ H002
+ |
+ | /--------- H007
+ | |
+ +-------15--------- H012
+ /-------16 |
+ | | \--------- H011
+ | |
+ | +------------------ H009
+ /--------17 |
+ | | \------------------ H006
+ | |
+ /-------18 \--------------------------- H008
+ | |
+ /-------19 \------------------------------------- H014
+ | |
+ /-------20 \---------------------------------------------- H001
+ | |
+ | \------------------------------------------------------- H013
+ |
+ +---------------------------------------------------------------- H010
+--------22
+ | /--------- H003
+ +-----------------------------------------------------21
+ | \--------- H005
+ |
+ \---------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_20 --> node_19 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_19 --> node_18 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_18 --> node_17 10 1 1.000 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_17 --> node_16 9 1 1.000 2 ==> 1
+ node_16 --> node_15 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_15 --> H012 11 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_16 --> H009 12 1 0.333 2 ==> 1
+ node_16 --> H006 11 1 0.333 2 ==> 1
+ node_17 --> H008 11 1 0.333 2 ==> 1
+ node_20 --> H013 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ node_22 --> H010 5 1 1.000 2 ==> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 65:
+
+Branch lengths and linkages for tree #65
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 21 root 0 0 0
+ 19 21 2 2 3
+ 18 19 3 3 4
+ 17 18 2 1 2
+ 16 17 1 1 1
+H002 (1) 16 0 0 0
+ 15 16 2 2 3
+H007 (3) 15 2 1 2
+H012 (11) 15 2 1 2
+H011 (14) 15 0 0 1
+H009 (12) 16 1 1 1
+H006 (13) 16 1 1 1
+H008 (4) 17 1 1 1
+H014 (5) 18 0 0 0
+H001 (7) 19 0 0 0
+H010 (2) 21 1 1 1
+H013 (6) 21 2 2 2
+ 20 21 1 1 1
+H003 (8) 20 1 1 1
+H005 (10) 20 1 1 1
+H000 (9)* 21 0 0 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+ /--------------------- H002
+ |
+ | /---------- H007
+ | |
+ +---------15---------- H012
+ /--------16 |
+ | | \---------- H011
+ | |
+ | +--------------------- H009
+ /---------17 |
+ | | \--------------------- H006
+ | |
+ /--------18 \------------------------------- H008
+ | |
+ /---------19 \------------------------------------------ H014
+ | |
+ | \---------------------------------------------------- H001
+ |
+ +--------------------------------------------------------------- H010
+ |
+---------21--------------------------------------------------------------- H013
+ |
+ | /---------- H003
+ +---------------------------------------------------20
+ | \---------- H005
+ |
+ \--------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_19 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_19 --> node_18 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_18 --> node_17 10 1 1.000 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_17 --> node_16 9 1 1.000 2 ==> 1
+ node_16 --> node_15 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_15 --> H012 11 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_16 --> H009 12 1 0.333 2 ==> 1
+ node_16 --> H006 11 1 0.333 2 ==> 1
+ node_17 --> H008 11 1 0.333 2 ==> 1
+ node_21 --> H010 5 1 1.000 2 ==> 1
+ node_21 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ node_21 --> node_20 3 1 1.000 2 ==> 1
+ node_20 --> H003 4 1 1.000 2 ==> 1
+ node_20 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 66:
+
+Branch lengths and linkages for tree #66
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 21 23 2 2 3
+ 20 21 3 3 4
+ 19 20 2 1 2
+ 18 19 1 1 1
+H002 (1) 18 0 0 0
+ 17 18 0 0 1
+ 16 17 2 2 3
+ 15 16 0 0 1
+H007 (3) 15 2 1 2
+H011 (14) 15 0 0 1
+H012 (11) 16 2 0 2
+H006 (13) 17 1 0 1
+H009 (12) 18 1 1 1
+H008 (4) 19 1 1 1
+H014 (5) 20 0 0 0
+H013 (6) 21 0 0 0
+H010 (2) 23 1 1 1
+H001 (7) 23 2 2 2
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (10) 22 1 1 1
+H000 (9)* 23 0 0 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+ /-------------------------------- H002
+ |
+ | /-------- H007
+ | /------15
+ | | \-------- H011
+ /-------18 /------16
+ | | | \---------------- H012
+ | +------17
+ | | \------------------------ H006
+ /------19 |
+ | | \-------------------------------- H009
+ | |
+ /------20 \----------------------------------------- H008
+ | |
+ /------21 \------------------------------------------------- H014
+ | |
+ | \--------------------------------------------------------- H013
+ |
+ +----------------------------------------------------------------- H010
+ |
+-------23----------------------------------------------------------------- H001
+ |
+ | /-------- H003
+ +-------------------------------------------------------22
+ | \-------- H005
+ |
+ \----------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_21 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_21 --> node_20 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_20 --> node_19 10 1 1.000 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_19 --> node_18 9 1 1.000 2 ==> 1
+ node_17 --> node_16 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_16 --> H012 11 1 0.333 2 --> 1
+ 13 1 0.333 1 --> 0
+ node_17 --> H006 11 1 0.333 2 --> 1
+ node_18 --> H009 12 1 0.333 2 ==> 1
+ node_19 --> H008 11 1 0.333 2 ==> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+ node_23 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 67:
+
+Branch lengths and linkages for tree #67
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 25 root 0 0 0
+ 23 25 0 0 3
+ 22 23 2 2 3
+ 21 22 3 1 4
+ 20 21 2 1 3
+ 19 20 1 1 1
+ 18 19 0 0 1
+ 15 18 0 0 1
+H002 (1) 15 0 0 0
+H009 (12) 15 1 1 1
+ 17 18 2 2 3
+ 16 17 0 0 1
+H007 (3) 16 2 1 2
+H011 (14) 16 0 0 1
+H012 (11) 17 2 0 2
+H006 (13) 19 1 0 1
+H008 (4) 20 1 0 1
+H014 (5) 21 0 0 0
+H013 (6) 22 0 0 2
+H001 (7) 23 2 0 2
+H010 (2) 25 1 1 1
+ 24 25 1 1 1
+H003 (8) 24 1 1 1
+H005 (10) 24 1 1 1
+H000 (9)* 25 0 0 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+ /------- H002
+ /-------------15
+ | \------- H009
+ |
+ /-----18 /------- H007
+ | | /------16
+ | | | \------- H011
+ /-----19 \-----17
+ | | \--------------- H012
+ | |
+ /------20 \----------------------------- H006
+ | |
+ /-----21 \------------------------------------ H008
+ | |
+ /-----22 \-------------------------------------------- H014
+ | |
+ /------23 \--------------------------------------------------- H013
+ | |
+ | \---------------------------------------------------------- H001
+ |
+ +------------------------------------------------------------------ H010
+------25
+ | /------- H003
+ +---------------------------------------------------------24
+ | \------- H005
+ |
+ \------------------------------------------------------------------ H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_22 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_22 --> node_21 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_21 --> node_20 10 1 1.000 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_20 --> node_19 9 1 1.000 2 ==> 1
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_18 --> node_17 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_17 --> H012 11 1 0.333 2 --> 1
+ 13 1 0.333 1 --> 0
+ node_19 --> H006 11 1 0.333 2 --> 1
+ node_20 --> H008 11 1 0.333 2 --> 1
+ node_23 --> H001 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ node_25 --> H010 5 1 1.000 2 ==> 1
+ node_25 --> node_24 3 1 1.000 2 ==> 1
+ node_24 --> H003 4 1 1.000 2 ==> 1
+ node_24 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 68:
+
+Branch lengths and linkages for tree #68
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 24 root 0 0 0
+ 22 24 0 0 3
+ 21 22 2 2 3
+ 20 21 3 1 4
+ 19 20 2 1 2
+ 18 19 1 1 1
+H002 (1) 18 0 0 0
+ 17 18 0 0 1
+ 16 17 2 2 3
+ 15 16 0 0 1
+H007 (3) 15 2 1 2
+H011 (14) 15 0 0 1
+H012 (11) 16 2 0 2
+H006 (13) 17 1 0 1
+H009 (12) 18 1 1 1
+H008 (4) 19 1 1 1
+H014 (5) 20 0 0 0
+H013 (6) 21 0 0 2
+H001 (7) 22 2 0 2
+H010 (2) 24 1 1 1
+ 23 24 1 1 1
+H003 (8) 23 1 1 1
+H005 (10) 23 1 1 1
+H000 (9)* 24 0 0 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+ /----------------------------- H002
+ |
+ | /------- H007
+ | /------15
+ | | \------- H011
+ /-----18 /-----16
+ | | | \--------------- H012
+ | +-----17
+ | | \---------------------- H006
+ /------19 |
+ | | \----------------------------- H009
+ | |
+ /-----20 \------------------------------------ H008
+ | |
+ /-----21 \-------------------------------------------- H014
+ | |
+ /------22 \--------------------------------------------------- H013
+ | |
+ | \---------------------------------------------------------- H001
+ |
+ +------------------------------------------------------------------ H010
+------24
+ | /------- H003
+ +---------------------------------------------------------23
+ | \------- H005
+ |
+ \------------------------------------------------------------------ H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_21 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_21 --> node_20 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_20 --> node_19 10 1 1.000 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_19 --> node_18 9 1 1.000 2 ==> 1
+ node_17 --> node_16 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_16 --> H012 11 1 0.333 2 --> 1
+ 13 1 0.333 1 --> 0
+ node_17 --> H006 11 1 0.333 2 --> 1
+ node_18 --> H009 12 1 0.333 2 ==> 1
+ node_19 --> H008 11 1 0.333 2 ==> 1
+ node_22 --> H001 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ node_24 --> H010 5 1 1.000 2 ==> 1
+ node_24 --> node_23 3 1 1.000 2 ==> 1
+ node_23 --> H003 4 1 1.000 2 ==> 1
+ node_23 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 69:
+
+Branch lengths and linkages for tree #69
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 22 root 0 0 0
+ 20 22 2 2 3
+ 19 20 3 3 4
+ 18 19 2 1 3
+ 17 18 1 1 1
+ 16 17 0 0 1
+H002 (1) 16 0 0 0
+ 15 16 2 2 3
+H007 (3) 15 2 1 2
+H012 (11) 15 2 1 2
+H011 (14) 15 0 0 1
+H009 (12) 16 1 1 1
+H006 (13) 17 1 0 1
+H008 (4) 18 1 0 1
+H014 (5) 19 0 0 0
+H001 (7) 20 0 0 0
+H010 (2) 22 1 1 1
+H013 (6) 22 2 2 2
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (10) 21 1 1 1
+H000 (9)* 22 0 0 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+ /------------------ H002
+ |
+ | /--------- H007
+ | |
+ /-------16-------15--------- H012
+ | | |
+ | | \--------- H011
+ /--------17 |
+ | | \------------------ H009
+ | |
+ /-------18 \--------------------------- H006
+ | |
+ /-------19 \------------------------------------- H008
+ | |
+ /-------20 \---------------------------------------------- H014
+ | |
+ | \------------------------------------------------------- H001
+ |
+ +---------------------------------------------------------------- H010
+ |
+--------22---------------------------------------------------------------- H013
+ |
+ | /--------- H003
+ +-----------------------------------------------------21
+ | \--------- H005
+ |
+ \---------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_20 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_20 --> node_19 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_19 --> node_18 10 1 1.000 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_18 --> node_17 9 1 1.000 2 ==> 1
+ node_16 --> node_15 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_15 --> H012 11 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_16 --> H009 12 1 0.333 2 ==> 1
+ node_17 --> H006 11 1 0.333 2 --> 1
+ node_18 --> H008 11 1 0.333 2 --> 1
+ node_22 --> H010 5 1 1.000 2 ==> 1
+ node_22 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 70:
+
+Branch lengths and linkages for tree #70
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 21 23 0 0 3
+ 20 21 2 2 3
+ 19 20 3 1 4
+ 18 19 2 1 3
+ 17 18 1 1 1
+ 16 17 0 0 1
+H002 (1) 16 0 0 0
+ 15 16 2 2 3
+H007 (3) 15 2 1 2
+H012 (11) 15 2 1 2
+H011 (14) 15 0 0 1
+H009 (12) 16 1 1 1
+H006 (13) 17 1 0 1
+H008 (4) 18 1 0 1
+H014 (5) 19 0 0 0
+H001 (7) 20 0 0 2
+H013 (6) 21 2 0 2
+H010 (2) 23 1 1 1
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (10) 22 1 1 1
+H000 (9)* 23 0 0 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+ /---------------- H002
+ |
+ | /-------- H007
+ | |
+ /------16------15-------- H012
+ | | |
+ | | \-------- H011
+ /------17 |
+ | | \---------------- H009
+ | |
+ /-------18 \------------------------ H006
+ | |
+ /------19 \-------------------------------- H008
+ | |
+ /------20 \----------------------------------------- H014
+ | |
+ /------21 \------------------------------------------------- H001
+ | |
+ | \--------------------------------------------------------- H013
+ |
+ +----------------------------------------------------------------- H010
+-------23
+ | /-------- H003
+ +-------------------------------------------------------22
+ | \-------- H005
+ |
+ \----------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_20 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_20 --> node_19 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_19 --> node_18 10 1 1.000 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_18 --> node_17 9 1 1.000 2 ==> 1
+ node_16 --> node_15 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_15 --> H012 11 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_16 --> H009 12 1 0.333 2 ==> 1
+ node_17 --> H006 11 1 0.333 2 --> 1
+ node_18 --> H008 11 1 0.333 2 --> 1
+ node_21 --> H013 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 71:
+
+Branch lengths and linkages for tree #71
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 25 root 0 0 0
+ 23 25 0 0 3
+ 22 23 2 2 3
+ 21 22 3 1 4
+ 20 21 2 1 3
+ 19 20 1 1 1
+ 15 19 0 0 1
+H002 (1) 15 0 0 0
+H009 (12) 15 1 1 1
+ 18 19 0 0 1
+ 17 18 2 2 3
+ 16 17 0 0 1
+H007 (3) 16 2 1 2
+H011 (14) 16 0 0 1
+H012 (11) 17 2 0 2
+H006 (13) 18 1 0 1
+H008 (4) 20 1 0 1
+H014 (5) 21 0 0 0
+H013 (6) 22 0 0 2
+H001 (7) 23 2 0 2
+H010 (2) 25 1 1 1
+ 24 25 1 1 1
+H003 (8) 24 1 1 1
+H005 (10) 24 1 1 1
+H000 (9)* 25 0 0 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+ /------- H002
+ /--------------------15
+ | \------- H009
+ |
+ | /------- H007
+ /-----19 /------16
+ | | | \------- H011
+ | | /-----17
+ | | | \--------------- H012
+ /------20 \-----18
+ | | \---------------------- H006
+ | |
+ /-----21 \------------------------------------ H008
+ | |
+ /-----22 \-------------------------------------------- H014
+ | |
+ /------23 \--------------------------------------------------- H013
+ | |
+ | \---------------------------------------------------------- H001
+ |
+ +------------------------------------------------------------------ H010
+------25
+ | /------- H003
+ +---------------------------------------------------------24
+ | \------- H005
+ |
+ \------------------------------------------------------------------ H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_22 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_22 --> node_21 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_21 --> node_20 10 1 1.000 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_20 --> node_19 9 1 1.000 2 ==> 1
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_18 --> node_17 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_17 --> H012 11 1 0.333 2 --> 1
+ 13 1 0.333 1 --> 0
+ node_18 --> H006 11 1 0.333 2 --> 1
+ node_20 --> H008 11 1 0.333 2 --> 1
+ node_23 --> H001 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ node_25 --> H010 5 1 1.000 2 ==> 1
+ node_25 --> node_24 3 1 1.000 2 ==> 1
+ node_24 --> H003 4 1 1.000 2 ==> 1
+ node_24 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 72:
+
+Branch lengths and linkages for tree #72
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 24 root 0 0 0
+ 22 24 0 0 3
+ 21 22 2 2 3
+ 20 21 3 1 4
+ 19 20 2 1 3
+ 18 19 1 1 1
+ 15 18 0 0 1
+H002 (1) 15 0 0 0
+H009 (12) 15 1 1 1
+ 17 18 2 2 3
+ 16 17 0 0 1
+H007 (3) 16 2 1 2
+H011 (14) 16 0 0 1
+H012 (11) 17 2 0 2
+H006 (13) 18 1 0 1
+H008 (4) 19 1 0 1
+H014 (5) 20 0 0 0
+H013 (6) 21 0 0 2
+H001 (7) 22 2 0 2
+H010 (2) 24 1 1 1
+ 23 24 1 1 1
+H003 (8) 23 1 1 1
+H005 (10) 23 1 1 1
+H000 (9)* 24 0 0 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+ /-------- H002
+ /--------------15
+ | \-------- H009
+ |
+ | /-------- H007
+ | /------16
+ /------18 | \-------- H011
+ | +------17
+ | | \---------------- H012
+ /-------19 |
+ | | \------------------------ H006
+ | |
+ /------20 \-------------------------------- H008
+ | |
+ /------21 \----------------------------------------- H014
+ | |
+ /------22 \------------------------------------------------- H013
+ | |
+ | \--------------------------------------------------------- H001
+ |
+ +----------------------------------------------------------------- H010
+-------24
+ | /-------- H003
+ +-------------------------------------------------------23
+ | \-------- H005
+ |
+ \----------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_21 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_21 --> node_20 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_20 --> node_19 10 1 1.000 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_19 --> node_18 9 1 1.000 2 ==> 1
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_18 --> node_17 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_17 --> H012 11 1 0.333 2 --> 1
+ 13 1 0.333 1 --> 0
+ node_18 --> H006 11 1 0.333 2 --> 1
+ node_19 --> H008 11 1 0.333 2 --> 1
+ node_22 --> H001 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ node_24 --> H010 5 1 1.000 2 ==> 1
+ node_24 --> node_23 3 1 1.000 2 ==> 1
+ node_23 --> H003 4 1 1.000 2 ==> 1
+ node_23 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 73:
+
+Branch lengths and linkages for tree #73
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 24 root 0 0 0
+ 22 24 0 0 3
+ 21 22 2 2 3
+ 20 21 3 1 4
+ 19 20 2 1 2
+ 18 19 1 1 1
+H002 (1) 18 0 0 0
+ 17 18 0 0 1
+ 16 17 2 2 3
+H007 (3) 16 2 0 2
+ 15 16 0 0 1
+H012 (11) 15 2 1 2
+H011 (14) 15 0 0 1
+H009 (12) 17 1 0 1
+H006 (13) 18 1 1 1
+H008 (4) 19 1 1 1
+H014 (5) 20 0 0 0
+H013 (6) 21 0 0 2
+H001 (7) 22 2 0 2
+H010 (2) 24 1 1 1
+ 23 24 1 1 1
+H003 (8) 23 1 1 1
+H005 (10) 23 1 1 1
+H000 (9)* 24 0 0 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+ /----------------------------- H002
+ |
+ | /--------------- H007
+ | |
+ | /-----16 /------- H012
+ /-----18 | \------15
+ | +-----17 \------- H011
+ | | |
+ | | \---------------------- H009
+ /------19 |
+ | | \----------------------------- H006
+ | |
+ /-----20 \------------------------------------ H008
+ | |
+ /-----21 \-------------------------------------------- H014
+ | |
+ /------22 \--------------------------------------------------- H013
+ | |
+ | \---------------------------------------------------------- H001
+ |
+ +------------------------------------------------------------------ H010
+------24
+ | /------- H003
+ +---------------------------------------------------------23
+ | \------- H005
+ |
+ \------------------------------------------------------------------ H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_21 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_21 --> node_20 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_20 --> node_19 10 1 1.000 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_19 --> node_18 9 1 1.000 2 ==> 1
+ node_17 --> node_16 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 --> 1
+ 13 1 0.333 1 --> 0
+ node_15 --> H012 11 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_17 --> H009 12 1 0.333 2 --> 1
+ node_18 --> H006 11 1 0.333 2 ==> 1
+ node_19 --> H008 11 1 0.333 2 ==> 1
+ node_22 --> H001 1 1 0.333 2 --> 1
+ 2 1 0.333 2 --> 1
+ node_24 --> H010 5 1 1.000 2 ==> 1
+ node_24 --> node_23 3 1 1.000 2 ==> 1
+ node_23 --> H003 4 1 1.000 2 ==> 1
+ node_23 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 74:
+
+Branch lengths and linkages for tree #74
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 21 23 2 2 2
+ 20 21 3 3 3
+ 19 20 0 0 1
+ 18 19 3 3 3
+ 15 18 0 0 1
+H002 (1) 15 0 0 0
+H009 (12) 15 1 1 1
+ 17 18 0 0 1
+ 16 17 1 1 1
+H008 (4) 16 1 0 1
+H014 (5) 16 1 1 2
+H006 (13) 17 1 0 1
+H012 (11) 19 1 0 1
+H007 (3) 20 1 1 1
+H011 (14) 20 1 1 1
+H013 (6) 21 0 0 0
+H010 (2) 23 1 1 1
+H001 (7) 23 2 2 2
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (10) 22 1 1 1
+H000 (9)* 23 0 0 0
+-------------------------------------------------------------------------
+Sum 22
+
+Tree length = 22
+Consistency index (CI) = 0.5909
+Homoplasy index (HI) = 0.4091
+CI excluding uninformative characters = 0.5500
+HI excluding uninformative characters = 0.4500
+Retention index (RI) = 0.7805
+Rescaled consistency index (RC) = 0.4612
+
+ /--------- H002
+ /----------------15
+ | \--------- H009
+ |
+ /--------18 /--------- H008
+ | | /-------16
+ | | | \--------- H014
+ /-------19 \-------17
+ | | \------------------ H006
+ | |
+ | \------------------------------------- H012
+ /-------20
+ | +---------------------------------------------- H007
+ | |
+ /-------21 \---------------------------------------------- H011
+ | |
+ | \------------------------------------------------------- H013
+ |
+ +---------------------------------------------------------------- H010
+ |
+--------23---------------------------------------------------------------- H001
+ |
+ | /--------- H003
+ +-----------------------------------------------------22
+ | \--------- H005
+ |
+ \---------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_21 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_21 --> node_20 8 1 1.000 2 ==> 1
+ 9 1 0.500 2 ==> 1
+ 10 1 0.500 2 ==> 1
+ node_19 --> node_18 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ 13 1 0.500 0 ==> 1
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_17 --> node_16 9 1 0.500 1 ==> 2
+ node_16 --> H008 11 1 0.333 2 --> 1
+ node_16 --> H014 10 1 0.500 1 ==> 2
+ node_17 --> H006 11 1 0.333 2 --> 1
+ node_19 --> H012 11 1 0.333 2 --> 1
+ node_20 --> H007 12 1 0.333 2 ==> 1
+ node_20 --> H011 13 1 0.500 0 ==> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+ node_23 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 75:
+
+Branch lengths and linkages for tree #75
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 21 23 2 2 2
+ 20 21 3 3 3
+ 19 20 0 0 1
+ 18 19 3 3 3
+ 17 18 0 0 1
+ 15 17 0 0 1
+H002 (1) 15 0 0 0
+H009 (12) 15 1 1 1
+ 16 17 1 1 1
+H008 (4) 16 1 0 1
+H014 (5) 16 1 1 2
+H006 (13) 18 1 0 1
+H012 (11) 19 1 0 1
+H007 (3) 20 1 1 1
+H011 (14) 20 1 1 1
+H013 (6) 21 0 0 0
+H010 (2) 23 1 1 1
+H001 (7) 23 2 2 2
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (10) 22 1 1 1
+H000 (9)* 23 0 0 0
+-------------------------------------------------------------------------
+Sum 22
+
+Tree length = 22
+Consistency index (CI) = 0.5909
+Homoplasy index (HI) = 0.4091
+CI excluding uninformative characters = 0.5500
+HI excluding uninformative characters = 0.4500
+Retention index (RI) = 0.7805
+Rescaled consistency index (RC) = 0.4612
+
+ /--------- H002
+ /-------15
+ | \--------- H009
+ /-------17
+ | | /--------- H008
+ | \-------16
+ /--------18 \--------- H014
+ | |
+ /-------19 \--------------------------- H006
+ | |
+ | \------------------------------------- H012
+ /-------20
+ | +---------------------------------------------- H007
+ | |
+ /-------21 \---------------------------------------------- H011
+ | |
+ | \------------------------------------------------------- H013
+ |
+ +---------------------------------------------------------------- H010
+ |
+--------23---------------------------------------------------------------- H001
+ |
+ | /--------- H003
+ +-----------------------------------------------------22
+ | \--------- H005
+ |
+ \---------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_21 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_21 --> node_20 8 1 1.000 2 ==> 1
+ 9 1 0.500 2 ==> 1
+ 10 1 0.500 2 ==> 1
+ node_19 --> node_18 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ 13 1 0.500 0 ==> 1
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_17 --> node_16 9 1 0.500 1 ==> 2
+ node_16 --> H008 11 1 0.333 2 --> 1
+ node_16 --> H014 10 1 0.500 1 ==> 2
+ node_18 --> H006 11 1 0.333 2 --> 1
+ node_19 --> H012 11 1 0.333 2 --> 1
+ node_20 --> H007 12 1 0.333 2 ==> 1
+ node_20 --> H011 13 1 0.500 0 ==> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+ node_23 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 76:
+
+Branch lengths and linkages for tree #76
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 22 root 0 0 0
+ 20 22 2 2 2
+ 19 20 3 3 3
+ 18 19 0 0 1
+ 17 18 3 3 3
+ 15 17 0 0 1
+H002 (1) 15 0 0 0
+H009 (12) 15 1 1 1
+ 16 17 1 1 1
+H008 (4) 16 1 0 1
+H014 (5) 16 1 1 2
+H006 (13) 17 1 0 1
+H012 (11) 18 1 0 1
+H007 (3) 19 1 1 1
+H011 (14) 19 1 1 1
+H013 (6) 20 0 0 0
+H010 (2) 22 1 1 1
+H001 (7) 22 2 2 2
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (10) 21 1 1 1
+H000 (9)* 22 0 0 0
+-------------------------------------------------------------------------
+Sum 22
+
+Tree length = 22
+Consistency index (CI) = 0.5909
+Homoplasy index (HI) = 0.4091
+CI excluding uninformative characters = 0.5500
+HI excluding uninformative characters = 0.4500
+Retention index (RI) = 0.7805
+Rescaled consistency index (RC) = 0.4612
+
+ /---------- H002
+ /---------15
+ | \---------- H009
+ |
+ | /---------- H008
+ /--------17---------16
+ | | \---------- H014
+ | |
+ /---------18 \--------------------- H006
+ | |
+ | \------------------------------- H012
+ /--------19
+ | +------------------------------------------ H007
+ | |
+ /---------20 \------------------------------------------ H011
+ | |
+ | \---------------------------------------------------- H013
+ |
+ +--------------------------------------------------------------- H010
+ |
+---------22--------------------------------------------------------------- H001
+ |
+ | /---------- H003
+ +---------------------------------------------------21
+ | \---------- H005
+ |
+ \--------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_20 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_20 --> node_19 8 1 1.000 2 ==> 1
+ 9 1 0.500 2 ==> 1
+ 10 1 0.500 2 ==> 1
+ node_18 --> node_17 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ 13 1 0.500 0 ==> 1
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_17 --> node_16 9 1 0.500 1 ==> 2
+ node_16 --> H008 11 1 0.333 2 --> 1
+ node_16 --> H014 10 1 0.500 1 ==> 2
+ node_17 --> H006 11 1 0.333 2 --> 1
+ node_18 --> H012 11 1 0.333 2 --> 1
+ node_19 --> H007 12 1 0.333 2 ==> 1
+ node_19 --> H011 13 1 0.500 0 ==> 1
+ node_22 --> H010 5 1 1.000 2 ==> 1
+ node_22 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 77:
+
+Branch lengths and linkages for tree #77
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 24 root 0 0 0
+ 22 24 2 2 3
+ 21 22 3 3 4
+ 20 21 2 1 3
+ 15 20 1 0 1
+H002 (1) 15 0 0 0
+H009 (12) 15 1 1 1
+ 19 20 1 1 1
+ 18 19 1 0 1
+ 17 18 2 2 3
+ 16 17 1 1 1
+H007 (3) 16 2 1 2
+H011 (14) 16 0 0 1
+H012 (11) 17 1 0 1
+H006 (13) 18 0 0 0
+H008 (4) 19 0 0 1
+H014 (5) 21 0 0 0
+H001 (7) 22 0 0 0
+H010 (2) 24 1 1 1
+H013 (6) 24 2 2 2
+ 23 24 1 1 1
+H003 (8) 23 1 1 1
+H005 (10) 23 1 1 1
+H000 (9)* 24 0 0 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+ /-------- H002
+ /-------------------------------15
+ | \-------- H009
+ |
+ | /-------- H007
+ | /------16
+ /------20 | \-------- H011
+ | | /------17
+ | | | \---------------- H012
+ | | /------18
+ /------21 | | \------------------------ H006
+ | | \-------19
+ | | \-------------------------------- H008
+ /------22 |
+ | | \------------------------------------------------- H014
+ | |
+ | \--------------------------------------------------------- H001
+ |
+ +----------------------------------------------------------------- H010
+ |
+-------24----------------------------------------------------------------- H013
+ |
+ | /-------- H003
+ +-------------------------------------------------------23
+ | \-------- H005
+ |
+ \----------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_24 --> node_22 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_22 --> node_21 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_21 --> node_20 10 1 1.000 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_20 --> node_15 9 1 0.500 2 --> 1
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_20 --> node_19 11 1 0.500 2 ==> 1
+ node_19 --> node_18 9 1 0.500 2 --> 1
+ node_18 --> node_17 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_17 --> node_16 11 1 0.500 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_17 --> H012 13 1 0.333 1 --> 0
+ node_24 --> H010 5 1 1.000 2 ==> 1
+ node_24 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ node_24 --> node_23 3 1 1.000 2 ==> 1
+ node_23 --> H003 4 1 1.000 2 ==> 1
+ node_23 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 78:
+
+Branch lengths and linkages for tree #78
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 25 root 0 0 0
+ 23 25 0 0 3
+ 22 23 2 2 3
+ 21 22 3 1 4
+ 20 21 2 1 3
+ 15 20 1 0 1
+H002 (1) 15 0 0 0
+H009 (12) 15 1 1 1
+ 19 20 1 1 1
+ 18 19 1 0 1
+ 17 18 2 2 3
+ 16 17 1 1 1
+H007 (3) 16 2 1 2
+H011 (14) 16 0 0 1
+H012 (11) 17 1 0 1
+H006 (13) 18 0 0 0
+H008 (4) 19 0 0 1
+H014 (5) 21 0 0 0
+H001 (7) 22 0 0 2
+H013 (6) 23 2 0 2
+H010 (2) 25 1 1 1
+ 24 25 1 1 1
+H003 (8) 24 1 1 1
+H005 (10) 24 1 1 1
+H000 (9)* 25 0 0 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+ /------- H002
+ /---------------------------15
+ | \------- H009
+ |
+ | /------- H007
+ | /------16
+ /------20 | \------- H011
+ | | /-----17
+ | | | \--------------- H012
+ | | /-----18
+ /-----21 | | \---------------------- H006
+ | | \-----19
+ | | \----------------------------- H008
+ /-----22 |
+ | | \-------------------------------------------- H014
+ | |
+ /------23 \--------------------------------------------------- H001
+ | |
+ | \---------------------------------------------------------- H013
+ |
+ +------------------------------------------------------------------ H010
+------25
+ | /------- H003
+ +---------------------------------------------------------24
+ | \------- H005
+ |
+ \------------------------------------------------------------------ H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_22 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_22 --> node_21 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_21 --> node_20 10 1 1.000 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_20 --> node_15 9 1 0.500 2 --> 1
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_20 --> node_19 11 1 0.500 2 ==> 1
+ node_19 --> node_18 9 1 0.500 2 --> 1
+ node_18 --> node_17 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_17 --> node_16 11 1 0.500 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_17 --> H012 13 1 0.333 1 --> 0
+ node_23 --> H013 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ node_25 --> H010 5 1 1.000 2 ==> 1
+ node_25 --> node_24 3 1 1.000 2 ==> 1
+ node_24 --> H003 4 1 1.000 2 ==> 1
+ node_24 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 79:
+
+Branch lengths and linkages for tree #79
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 24 root 0 0 0
+ 22 24 0 0 3
+ 21 22 2 2 3
+ 20 21 3 1 4
+ 19 20 2 1 2
+ 18 19 1 1 1
+H002 (1) 18 0 0 0
+ 17 18 0 0 1
+ 16 17 2 2 3
+H007 (3) 16 2 0 2
+ 15 16 0 0 1
+H012 (11) 15 2 1 2
+H011 (14) 15 0 0 1
+H009 (12) 17 1 0 1
+H006 (13) 18 1 1 1
+H008 (4) 19 1 1 1
+H014 (5) 20 0 0 0
+H001 (7) 21 0 0 2
+H013 (6) 22 2 0 2
+H010 (2) 24 1 1 1
+ 23 24 1 1 1
+H003 (8) 23 1 1 1
+H005 (10) 23 1 1 1
+H000 (9)* 24 0 0 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+ /----------------------------- H002
+ |
+ | /--------------- H007
+ | |
+ | /-----16 /------- H012
+ /-----18 | \------15
+ | +-----17 \------- H011
+ | | |
+ | | \---------------------- H009
+ /------19 |
+ | | \----------------------------- H006
+ | |
+ /-----20 \------------------------------------ H008
+ | |
+ /-----21 \-------------------------------------------- H014
+ | |
+ /------22 \--------------------------------------------------- H001
+ | |
+ | \---------------------------------------------------------- H013
+ |
+ +------------------------------------------------------------------ H010
+------24
+ | /------- H003
+ +---------------------------------------------------------23
+ | \------- H005
+ |
+ \------------------------------------------------------------------ H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_21 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_21 --> node_20 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_20 --> node_19 10 1 1.000 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_19 --> node_18 9 1 1.000 2 ==> 1
+ node_17 --> node_16 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 --> 1
+ 13 1 0.333 1 --> 0
+ node_15 --> H012 11 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_17 --> H009 12 1 0.333 2 --> 1
+ node_18 --> H006 11 1 0.333 2 ==> 1
+ node_19 --> H008 11 1 0.333 2 ==> 1
+ node_22 --> H013 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ node_24 --> H010 5 1 1.000 2 ==> 1
+ node_24 --> node_23 3 1 1.000 2 ==> 1
+ node_23 --> H003 4 1 1.000 2 ==> 1
+ node_23 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 80:
+
+Branch lengths and linkages for tree #80
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 22 root 0 0 0
+ 20 22 2 2 2
+ 19 20 3 3 3
+ 18 19 0 0 1
+ 17 18 3 3 3
+ 16 17 0 0 1
+H002 (1) 16 0 0 0
+ 15 16 1 1 1
+H008 (4) 15 1 1 1
+H014 (5) 15 1 1 1
+H006 (13) 16 1 1 1
+H009 (12) 17 1 0 1
+H007 (3) 18 1 0 1
+H012 (11) 19 1 1 1
+H011 (14) 19 1 1 1
+H013 (6) 20 0 0 0
+H010 (2) 22 1 1 1
+H001 (7) 22 2 2 2
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (10) 21 1 1 1
+H000 (9)* 22 0 0 0
+-------------------------------------------------------------------------
+Sum 22
+
+Tree length = 22
+Consistency index (CI) = 0.5909
+Homoplasy index (HI) = 0.4091
+CI excluding uninformative characters = 0.5500
+HI excluding uninformative characters = 0.4500
+Retention index (RI) = 0.7805
+Rescaled consistency index (RC) = 0.4612
+
+ /------------------ H002
+ |
+ | /--------- H008
+ /-------16-------15
+ | | \--------- H014
+ | |
+ /--------17 \------------------ H006
+ | |
+ /-------18 \--------------------------- H009
+ | |
+ | \------------------------------------- H007
+ /-------19
+ | +---------------------------------------------- H012
+ | |
+ /-------20 \---------------------------------------------- H011
+ | |
+ | \------------------------------------------------------- H013
+ |
+ +---------------------------------------------------------------- H010
+ |
+--------22---------------------------------------------------------------- H001
+ |
+ | /--------- H003
+ +-----------------------------------------------------21
+ | \--------- H005
+ |
+ \---------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_20 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_20 --> node_19 8 1 1.000 2 ==> 1
+ 9 1 0.500 2 ==> 1
+ 10 1 0.500 2 ==> 1
+ node_18 --> node_17 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ 13 1 0.500 0 ==> 1
+ node_16 --> node_15 9 1 0.500 1 ==> 2
+ node_15 --> H008 11 1 0.333 2 ==> 1
+ node_15 --> H014 10 1 0.500 1 ==> 2
+ node_16 --> H006 11 1 0.333 2 ==> 1
+ node_17 --> H009 12 1 0.333 2 --> 1
+ node_18 --> H007 12 1 0.333 2 --> 1
+ node_19 --> H012 11 1 0.333 2 ==> 1
+ node_19 --> H011 13 1 0.500 0 ==> 1
+ node_22 --> H010 5 1 1.000 2 ==> 1
+ node_22 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 81:
+
+Branch lengths and linkages for tree #81
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 22 root 0 0 0
+ 20 22 2 2 2
+ 19 20 3 3 3
+ 18 19 0 0 1
+ 17 18 3 3 3
+ 16 17 0 0 1
+H002 (1) 16 0 0 0
+ 15 16 1 1 1
+H008 (4) 15 1 1 1
+H014 (5) 15 1 1 1
+H009 (12) 16 1 1 1
+H006 (13) 17 1 0 1
+H012 (11) 18 1 0 1
+H007 (3) 19 1 1 1
+H011 (14) 19 1 1 1
+H013 (6) 20 0 0 0
+H010 (2) 22 1 1 1
+H001 (7) 22 2 2 2
+ 21 22 1 1 1
+H003 (8) 21 1 1 1
+H005 (10) 21 1 1 1
+H000 (9)* 22 0 0 0
+-------------------------------------------------------------------------
+Sum 22
+
+Tree length = 22
+Consistency index (CI) = 0.5909
+Homoplasy index (HI) = 0.4091
+CI excluding uninformative characters = 0.5500
+HI excluding uninformative characters = 0.4500
+Retention index (RI) = 0.7805
+Rescaled consistency index (RC) = 0.4612
+
+ /------------------ H002
+ |
+ | /--------- H008
+ /-------16-------15
+ | | \--------- H014
+ | |
+ /--------17 \------------------ H009
+ | |
+ /-------18 \--------------------------- H006
+ | |
+ | \------------------------------------- H012
+ /-------19
+ | +---------------------------------------------- H007
+ | |
+ /-------20 \---------------------------------------------- H011
+ | |
+ | \------------------------------------------------------- H013
+ |
+ +---------------------------------------------------------------- H010
+ |
+--------22---------------------------------------------------------------- H001
+ |
+ | /--------- H003
+ +-----------------------------------------------------21
+ | \--------- H005
+ |
+ \---------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_20 6 1 1.000 2 ==> 1
+ 7 1 1.000 2 ==> 1
+ node_20 --> node_19 8 1 1.000 2 ==> 1
+ 9 1 0.500 2 ==> 1
+ 10 1 0.500 2 ==> 1
+ node_18 --> node_17 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ 13 1 0.500 0 ==> 1
+ node_16 --> node_15 9 1 0.500 1 ==> 2
+ node_15 --> H008 11 1 0.333 2 ==> 1
+ node_15 --> H014 10 1 0.500 1 ==> 2
+ node_16 --> H009 12 1 0.333 2 ==> 1
+ node_17 --> H006 11 1 0.333 2 --> 1
+ node_18 --> H012 11 1 0.333 2 --> 1
+ node_19 --> H007 12 1 0.333 2 ==> 1
+ node_19 --> H011 13 1 0.500 0 ==> 1
+ node_22 --> H010 5 1 1.000 2 ==> 1
+ node_22 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_22 --> node_21 3 1 1.000 2 ==> 1
+ node_21 --> H003 4 1 1.000 2 ==> 1
+ node_21 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 82:
+
+Branch lengths and linkages for tree #82
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 24 root 0 0 0
+ 22 24 2 2 3
+ 21 22 3 3 4
+ 20 21 2 1 3
+ 19 20 1 1 1
+ 18 19 0 0 1
+ 15 18 0 0 1
+H002 (1) 15 0 0 0
+H009 (12) 15 1 1 1
+ 17 18 2 2 3
+ 16 17 0 0 1
+H007 (3) 16 2 1 2
+H011 (14) 16 0 0 1
+H012 (11) 17 2 0 2
+H006 (13) 19 1 0 1
+H008 (4) 20 1 0 1
+H014 (5) 21 0 0 0
+H001 (7) 22 0 0 0
+H010 (2) 24 1 1 1
+H013 (6) 24 2 2 2
+ 23 24 1 1 1
+H003 (8) 23 1 1 1
+H005 (10) 23 1 1 1
+H000 (9)* 24 0 0 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+ /-------- H002
+ /--------------15
+ | \-------- H009
+ |
+ /------18 /-------- H007
+ | | /------16
+ | | | \-------- H011
+ /-------19 \------17
+ | | \---------------- H012
+ | |
+ /------20 \-------------------------------- H006
+ | |
+ /------21 \----------------------------------------- H008
+ | |
+ /------22 \------------------------------------------------- H014
+ | |
+ | \--------------------------------------------------------- H001
+ |
+ +----------------------------------------------------------------- H010
+ |
+-------24----------------------------------------------------------------- H013
+ |
+ | /-------- H003
+ +-------------------------------------------------------23
+ | \-------- H005
+ |
+ \----------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_24 --> node_22 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_22 --> node_21 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_21 --> node_20 10 1 1.000 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_20 --> node_19 9 1 1.000 2 ==> 1
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_18 --> node_17 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_17 --> H012 11 1 0.333 2 --> 1
+ 13 1 0.333 1 --> 0
+ node_19 --> H006 11 1 0.333 2 --> 1
+ node_20 --> H008 11 1 0.333 2 --> 1
+ node_24 --> H010 5 1 1.000 2 ==> 1
+ node_24 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ node_24 --> node_23 3 1 1.000 2 ==> 1
+ node_23 --> H003 4 1 1.000 2 ==> 1
+ node_23 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 83:
+
+Branch lengths and linkages for tree #83
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 25 root 0 0 0
+ 23 25 0 0 3
+ 22 23 2 2 3
+ 21 22 3 1 4
+ 20 21 2 1 3
+ 19 20 1 1 1
+ 18 19 0 0 1
+ 15 18 0 0 1
+H002 (1) 15 0 0 0
+H009 (12) 15 1 1 1
+ 17 18 2 2 3
+ 16 17 0 0 1
+H007 (3) 16 2 1 2
+H011 (14) 16 0 0 1
+H012 (11) 17 2 0 2
+H006 (13) 19 1 0 1
+H008 (4) 20 1 0 1
+H014 (5) 21 0 0 0
+H001 (7) 22 0 0 2
+H013 (6) 23 2 0 2
+H010 (2) 25 1 1 1
+ 24 25 1 1 1
+H003 (8) 24 1 1 1
+H005 (10) 24 1 1 1
+H000 (9)* 25 0 0 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+ /------- H002
+ /-------------15
+ | \------- H009
+ |
+ /-----18 /------- H007
+ | | /------16
+ | | | \------- H011
+ /-----19 \-----17
+ | | \--------------- H012
+ | |
+ /------20 \----------------------------- H006
+ | |
+ /-----21 \------------------------------------ H008
+ | |
+ /-----22 \-------------------------------------------- H014
+ | |
+ /------23 \--------------------------------------------------- H001
+ | |
+ | \---------------------------------------------------------- H013
+ |
+ +------------------------------------------------------------------ H010
+------25
+ | /------- H003
+ +---------------------------------------------------------24
+ | \------- H005
+ |
+ \------------------------------------------------------------------ H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_22 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_22 --> node_21 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_21 --> node_20 10 1 1.000 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_20 --> node_19 9 1 1.000 2 ==> 1
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_18 --> node_17 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_17 --> H012 11 1 0.333 2 --> 1
+ 13 1 0.333 1 --> 0
+ node_19 --> H006 11 1 0.333 2 --> 1
+ node_20 --> H008 11 1 0.333 2 --> 1
+ node_23 --> H013 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ node_25 --> H010 5 1 1.000 2 ==> 1
+ node_25 --> node_24 3 1 1.000 2 ==> 1
+ node_24 --> H003 4 1 1.000 2 ==> 1
+ node_24 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 84:
+
+Branch lengths and linkages for tree #84
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 24 root 0 0 0
+ 22 24 2 2 3
+ 21 22 3 3 4
+ 20 21 2 1 3
+ 19 20 1 1 1
+ 15 19 0 0 1
+H002 (1) 15 0 0 0
+H009 (12) 15 1 1 1
+ 18 19 0 0 1
+ 17 18 2 2 3
+ 16 17 0 0 1
+H007 (3) 16 2 1 2
+H011 (14) 16 0 0 1
+H012 (11) 17 2 0 2
+H006 (13) 18 1 0 1
+H008 (4) 20 1 0 1
+H014 (5) 21 0 0 0
+H001 (7) 22 0 0 0
+H010 (2) 24 1 1 1
+H013 (6) 24 2 2 2
+ 23 24 1 1 1
+H003 (8) 23 1 1 1
+H005 (10) 23 1 1 1
+H000 (9)* 24 0 0 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+ /-------- H002
+ /----------------------15
+ | \-------- H009
+ |
+ | /-------- H007
+ /-------19 /------16
+ | | | \-------- H011
+ | | /------17
+ | | | \---------------- H012
+ /------20 \------18
+ | | \------------------------ H006
+ | |
+ /------21 \----------------------------------------- H008
+ | |
+ /------22 \------------------------------------------------- H014
+ | |
+ | \--------------------------------------------------------- H001
+ |
+ +----------------------------------------------------------------- H010
+ |
+-------24----------------------------------------------------------------- H013
+ |
+ | /-------- H003
+ +-------------------------------------------------------23
+ | \-------- H005
+ |
+ \----------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_24 --> node_22 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_22 --> node_21 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_21 --> node_20 10 1 1.000 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_20 --> node_19 9 1 1.000 2 ==> 1
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_18 --> node_17 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_17 --> H012 11 1 0.333 2 --> 1
+ 13 1 0.333 1 --> 0
+ node_18 --> H006 11 1 0.333 2 --> 1
+ node_20 --> H008 11 1 0.333 2 --> 1
+ node_24 --> H010 5 1 1.000 2 ==> 1
+ node_24 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ node_24 --> node_23 3 1 1.000 2 ==> 1
+ node_23 --> H003 4 1 1.000 2 ==> 1
+ node_23 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 85:
+
+Branch lengths and linkages for tree #85
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 25 root 0 0 0
+ 23 25 0 0 3
+ 22 23 2 2 3
+ 21 22 3 1 4
+ 20 21 2 1 3
+ 19 20 1 1 1
+ 15 19 0 0 1
+H002 (1) 15 0 0 0
+H009 (12) 15 1 1 1
+ 18 19 0 0 1
+ 17 18 2 2 3
+ 16 17 0 0 1
+H007 (3) 16 2 1 2
+H011 (14) 16 0 0 1
+H012 (11) 17 2 0 2
+H006 (13) 18 1 0 1
+H008 (4) 20 1 0 1
+H014 (5) 21 0 0 0
+H001 (7) 22 0 0 2
+H013 (6) 23 2 0 2
+H010 (2) 25 1 1 1
+ 24 25 1 1 1
+H003 (8) 24 1 1 1
+H005 (10) 24 1 1 1
+H000 (9)* 25 0 0 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+ /------- H002
+ /--------------------15
+ | \------- H009
+ |
+ | /------- H007
+ /-----19 /------16
+ | | | \------- H011
+ | | /-----17
+ | | | \--------------- H012
+ /------20 \-----18
+ | | \---------------------- H006
+ | |
+ /-----21 \------------------------------------ H008
+ | |
+ /-----22 \-------------------------------------------- H014
+ | |
+ /------23 \--------------------------------------------------- H001
+ | |
+ | \---------------------------------------------------------- H013
+ |
+ +------------------------------------------------------------------ H010
+------25
+ | /------- H003
+ +---------------------------------------------------------24
+ | \------- H005
+ |
+ \------------------------------------------------------------------ H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_22 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_22 --> node_21 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_21 --> node_20 10 1 1.000 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_20 --> node_19 9 1 1.000 2 ==> 1
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_18 --> node_17 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_17 --> H012 11 1 0.333 2 --> 1
+ 13 1 0.333 1 --> 0
+ node_18 --> H006 11 1 0.333 2 --> 1
+ node_20 --> H008 11 1 0.333 2 --> 1
+ node_23 --> H013 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ node_25 --> H010 5 1 1.000 2 ==> 1
+ node_25 --> node_24 3 1 1.000 2 ==> 1
+ node_24 --> H003 4 1 1.000 2 ==> 1
+ node_24 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 86:
+
+Branch lengths and linkages for tree #86
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 24 root 0 0 0
+ 22 24 0 0 3
+ 21 22 2 2 3
+ 20 21 3 1 4
+ 19 20 2 1 2
+ 18 19 1 1 1
+H002 (1) 18 0 0 0
+ 17 18 0 0 1
+ 16 17 2 2 3
+ 15 16 0 0 1
+H007 (3) 15 2 1 2
+H011 (14) 15 0 0 1
+H012 (11) 16 2 0 2
+H006 (13) 17 1 0 1
+H009 (12) 18 1 1 1
+H008 (4) 19 1 1 1
+H014 (5) 20 0 0 0
+H001 (7) 21 0 0 2
+H013 (6) 22 2 0 2
+H010 (2) 24 1 1 1
+ 23 24 1 1 1
+H003 (8) 23 1 1 1
+H005 (10) 23 1 1 1
+H000 (9)* 24 0 0 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+ /----------------------------- H002
+ |
+ | /------- H007
+ | /------15
+ | | \------- H011
+ /-----18 /-----16
+ | | | \--------------- H012
+ | +-----17
+ | | \---------------------- H006
+ /------19 |
+ | | \----------------------------- H009
+ | |
+ /-----20 \------------------------------------ H008
+ | |
+ /-----21 \-------------------------------------------- H014
+ | |
+ /------22 \--------------------------------------------------- H001
+ | |
+ | \---------------------------------------------------------- H013
+ |
+ +------------------------------------------------------------------ H010
+------24
+ | /------- H003
+ +---------------------------------------------------------23
+ | \------- H005
+ |
+ \------------------------------------------------------------------ H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_21 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_21 --> node_20 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_20 --> node_19 10 1 1.000 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_19 --> node_18 9 1 1.000 2 ==> 1
+ node_17 --> node_16 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_16 --> H012 11 1 0.333 2 --> 1
+ 13 1 0.333 1 --> 0
+ node_17 --> H006 11 1 0.333 2 --> 1
+ node_18 --> H009 12 1 0.333 2 ==> 1
+ node_19 --> H008 11 1 0.333 2 ==> 1
+ node_22 --> H013 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ node_24 --> H010 5 1 1.000 2 ==> 1
+ node_24 --> node_23 3 1 1.000 2 ==> 1
+ node_23 --> H003 4 1 1.000 2 ==> 1
+ node_23 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 87:
+
+Branch lengths and linkages for tree #87
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 21 23 2 2 3
+ 20 21 3 3 4
+ 19 20 2 1 3
+ 18 19 1 1 1
+ 15 18 0 0 1
+H002 (1) 15 0 0 0
+H009 (12) 15 1 1 1
+ 17 18 2 2 3
+ 16 17 0 0 1
+H007 (3) 16 2 1 2
+H011 (14) 16 0 0 1
+H012 (11) 17 2 0 2
+H006 (13) 18 1 0 1
+H008 (4) 19 1 0 1
+H014 (5) 20 0 0 0
+H001 (7) 21 0 0 0
+H010 (2) 23 1 1 1
+H013 (6) 23 2 2 2
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (10) 22 1 1 1
+H000 (9)* 23 0 0 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+ /--------- H002
+ /----------------15
+ | \--------- H009
+ |
+ | /--------- H007
+ | /-------16
+ /--------18 | \--------- H011
+ | +-------17
+ | | \------------------ H012
+ /-------19 |
+ | | \--------------------------- H006
+ | |
+ /-------20 \------------------------------------- H008
+ | |
+ /-------21 \---------------------------------------------- H014
+ | |
+ | \------------------------------------------------------- H001
+ |
+ +---------------------------------------------------------------- H010
+ |
+--------23---------------------------------------------------------------- H013
+ |
+ | /--------- H003
+ +-----------------------------------------------------22
+ | \--------- H005
+ |
+ \---------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_21 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_21 --> node_20 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_20 --> node_19 10 1 1.000 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_19 --> node_18 9 1 1.000 2 ==> 1
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_18 --> node_17 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_17 --> H012 11 1 0.333 2 --> 1
+ 13 1 0.333 1 --> 0
+ node_18 --> H006 11 1 0.333 2 --> 1
+ node_19 --> H008 11 1 0.333 2 --> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+ node_23 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 88:
+
+Branch lengths and linkages for tree #88
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 24 root 0 0 0
+ 22 24 0 0 3
+ 21 22 2 2 3
+ 20 21 3 1 4
+ 19 20 2 1 3
+ 18 19 1 1 1
+ 15 18 0 0 1
+H002 (1) 15 0 0 0
+H009 (12) 15 1 1 1
+ 17 18 2 2 3
+ 16 17 0 0 1
+H007 (3) 16 2 1 2
+H011 (14) 16 0 0 1
+H012 (11) 17 2 0 2
+H006 (13) 18 1 0 1
+H008 (4) 19 1 0 1
+H014 (5) 20 0 0 0
+H001 (7) 21 0 0 2
+H013 (6) 22 2 0 2
+H010 (2) 24 1 1 1
+ 23 24 1 1 1
+H003 (8) 23 1 1 1
+H005 (10) 23 1 1 1
+H000 (9)* 24 0 0 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+ /-------- H002
+ /--------------15
+ | \-------- H009
+ |
+ | /-------- H007
+ | /------16
+ /------18 | \-------- H011
+ | +------17
+ | | \---------------- H012
+ /-------19 |
+ | | \------------------------ H006
+ | |
+ /------20 \-------------------------------- H008
+ | |
+ /------21 \----------------------------------------- H014
+ | |
+ /------22 \------------------------------------------------- H001
+ | |
+ | \--------------------------------------------------------- H013
+ |
+ +----------------------------------------------------------------- H010
+-------24
+ | /-------- H003
+ +-------------------------------------------------------23
+ | \-------- H005
+ |
+ \----------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_21 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_21 --> node_20 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ 8 1 1.000 2 ==> 1
+ node_20 --> node_19 10 1 1.000 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_19 --> node_18 9 1 1.000 2 ==> 1
+ node_15 --> H009 12 1 0.333 2 ==> 1
+ node_18 --> node_17 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_16 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_17 --> H012 11 1 0.333 2 --> 1
+ 13 1 0.333 1 --> 0
+ node_18 --> H006 11 1 0.333 2 --> 1
+ node_19 --> H008 11 1 0.333 2 --> 1
+ node_22 --> H013 6 1 0.500 2 --> 1
+ 7 1 0.500 2 --> 1
+ node_24 --> H010 5 1 1.000 2 ==> 1
+ node_24 --> node_23 3 1 1.000 2 ==> 1
+ node_23 --> H003 4 1 1.000 2 ==> 1
+ node_23 --> H005 12 1 0.333 2 ==> 1
+
+Tree number 89:
+
+Branch lengths and linkages for tree #89
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+ 23 root 0 0 0
+ 21 23 2 2 3
+ 20 21 3 3 4
+ 19 20 2 1 2
+ 18 19 1 1 1
+H002 (1) 18 0 0 0
+ 17 18 0 0 1
+ 16 17 2 2 3
+ 15 16 0 0 1
+H007 (3) 15 2 1 2
+H011 (14) 15 0 0 1
+H012 (11) 16 2 0 2
+H006 (13) 17 1 0 1
+H009 (12) 18 1 1 1
+H008 (4) 19 1 1 1
+H014 (5) 20 0 0 0
+H001 (7) 21 0 0 0
+H010 (2) 23 1 1 1
+H013 (6) 23 2 2 2
+ 22 23 1 1 1
+H003 (8) 22 1 1 1
+H005 (10) 22 1 1 1
+H000 (9)* 23 0 0 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+ /-------------------------------- H002
+ |
+ | /-------- H007
+ | /------15
+ | | \-------- H011
+ /-------18 /------16
+ | | | \---------------- H012
+ | +------17
+ | | \------------------------ H006
+ /------19 |
+ | | \-------------------------------- H009
+ | |
+ /------20 \----------------------------------------- H008
+ | |
+ /------21 \------------------------------------------------- H014
+ | |
+ | \--------------------------------------------------------- H001
+ |
+ +----------------------------------------------------------------- H010
+ |
+-------23----------------------------------------------------------------- H013
+ |
+ | /-------- H003
+ +-------------------------------------------------------22
+ | \-------- H005
+ |
+ \----------------------------------------------------------------- H000
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_21 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_21 --> node_20 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ 8 1 1.000 2 ==> 1
+ node_20 --> node_19 10 1 1.000 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_19 --> node_18 9 1 1.000 2 ==> 1
+ node_17 --> node_16 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_15 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_16 --> H012 11 1 0.333 2 --> 1
+ 13 1 0.333 1 --> 0
+ node_17 --> H006 11 1 0.333 2 --> 1
+ node_18 --> H009 12 1 0.333 2 ==> 1
+ node_19 --> H008 11 1 0.333 2 ==> 1
+ node_23 --> H010 5 1 1.000 2 ==> 1
+ node_23 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ node_23 --> node_22 3 1 1.000 2 ==> 1
+ node_22 --> H003 4 1 1.000 2 ==> 1
+ node_22 --> H005 12 1 0.333 2 ==> 1
diff --git a/trunk/test/paup/outgr_present/localisation/test.tree b/trunk/test/paup/outgr_present/localisation/test.tree
new file mode 100644
index 0000000000000000000000000000000000000000..24d7d569e6c73712c1659908bb6f2d0f3e5a8dae
--- /dev/null
+++ b/trunk/test/paup/outgr_present/localisation/test.tree
@@ -0,0 +1,121 @@
+#NEXUS
+
+Begin trees; [Treefile saved Tue Jan 10 21:29:10 2006]
+[!
+>Data file = /home/cbardel/recherche/logiciel/altree/test/paup/outgr_present/localisation/et_caco.paup
+>Heuristic search settings:
+> Optimality criterion = parsimony
+> Character-status summary:
+> 1 character is excluded
+> Of the remaining 12 included characters:
+> All characters are of type 'unord'
+> All characters have equal weight
+> 2 characters are parsimony-uninformative
+> Number of (included) parsimony-informative characters = 10
+> Starting tree(s) obtained via stepwise addition
+> Addition sequence: simple (reference taxon = H002)
+> Number of trees held at each step during stepwise addition = 1
+> Branch-swapping algorithm: tree-bisection-reconnection (TBR)
+> Steepest descent option not in effect
+> 'MaxTrees' setting = 2000 (will not be increased)
+> Branches collapsed (creating polytomies) if maximum branch length is zero
+> 'MulTrees' option in effect
+> Topological constraints not enforced
+> Trees are unrooted
+>
+>Heuristic search completed
+> Total number of rearrangements tried = 90130
+> Score of best tree(s) found = 20
+> Number of trees retained = 89
+> Time used = <1 sec (CPU time = 0.12 sec)
+]
+tree PAUP_1 = [&R] (H000,(((H002,(H007,H012,H011),(H008,H006),H009),H014),H013),H010,H001,(H003,H005));
+tree PAUP_2 = [&R] (H000,((((H002,(H008,H006),H009),(H007,H012,H011)),H014),H013),H010,H001,(H003,H005));
+tree PAUP_3 = [&R] (H000,((((H002,(H007,H012,H011),(H008,H006),H009),H014),H013),H001),H010,(H003,H005));
+tree PAUP_4 = [&R] (H000,(((H002,((H007,(H012,H011)),H009),(H008,H006)),H014),H013),H010,H001,(H003,H005));
+tree PAUP_5 = [&R] (H000,((((H002,(H008,H006),H009),H014),(H007,H012,H011)),H013),H010,H001,(H003,H005));
+tree PAUP_6 = [&R] (H000,(((H002,(((H007,H011),H012),(H008,H006)),H009),H014),H013),H010,H001,(H003,H005));
+tree PAUP_7 = [&R] (H000,(((H002,(((H007,H011),H012),H008,H006),H009),H014),H013),H010,H001,(H003,H005));
+tree PAUP_8 = [&R] (H000,((((H002,((H007,(H012,H011)),H009)),(H008,H006)),H014),H013),H010,H001,(H003,H005));
+tree PAUP_9 = [&R] (H000,((((((H002,(H008,H006)),H009),H007),H012,H011),H014),H013),H010,H001,(H003,H005));
+tree PAUP_10 = [&R] (H000,((((H002,(H008,H006),H009),H007,H012,H011),H014),H013),H010,H001,(H003,H005));
+tree PAUP_11 = [&R] (H000,(((((H002,((H007,(H012,H011)),H009)),H006),H008),H014),H013),H010,H001,(H003,H005));
+tree PAUP_12 = [&R] (H000,(((H002,(H008,H006),H014,H009),H007,H012,H011),H013),H010,H001,(H003,H005));
+tree PAUP_13 = [&R] (H000,(((H002,(H007,H012,H011),(H008,H006),H009),H014),H001),H010,H013,(H003,H005));
+tree PAUP_14 = [&R] (H000,((((H002,(H007,H012,H011),(H008,H006),H009),H014),H001),H013),H010,(H003,H005));
+tree PAUP_15 = [&R] (H000,((((H002,(H007,H012,H011),H009),(H008,H006)),H014),H013),H010,H001,(H003,H005));
+tree PAUP_16 = [&R] (H000,((((H002,(H007,H012,H011),H009,H006),H008),H014),H013),H010,H001,(H003,H005));
+tree PAUP_17 = [&R] (H000,(((((H002,(H008,H006),H009),(H007,H012,H011)),H014),H013),H001),H010,(H003,H005));
+tree PAUP_18 = [&R] (H000,(((((H002,(H007,H012,H011),H009),(H008,H006)),H014),H013),H001),H010,(H003,H005));
+tree PAUP_19 = [&R] (H000,((((((H002,(H007,H012,H011),H009),H006),H008),H014),H013),H001),H010,(H003,H005));
+tree PAUP_20 = [&R] (H000,((((H002,(((H007,H011),H012),(H008,H006)),H009),H014),H013),H001),H010,(H003,H005));
+tree PAUP_21 = [&R] (H000,((((H002,(((H007,H011),H012),H008,H006),H009),H014),H013),H001),H010,(H003,H005));
+tree PAUP_22 = [&R] (H000,((((H002,((H007,(H012,H011)),H009),(H008,H006)),H014),H013),H001),H010,(H003,H005));
+tree PAUP_23 = [&R] (H000,((((((H002,H009),(H008,H006)),H012),H007,H011),H014),H013),H010,H001,(H003,H005));
+tree PAUP_24 = [&R] (H000,(((((H002,H009),(H008,H006)),H014),(H007,H012,H011)),H013),H010,H001,(H003,H005));
+tree PAUP_25 = [&R] (H000,((((((H002,H009),H008,H006),H012),H007,H011),H014),H013),H010,H001,(H003,H005));
+tree PAUP_26 = [&R] (H000,((((((H002,H009),H006),H008),H014),(H007,H012,H011)),H013),H010,H001,(H003,H005));
+tree PAUP_27 = [&R] (H000,(((H002,((H008,H006),H014),H009),H007,H012,H011),H013),H010,H001,(H003,H005));
+tree PAUP_28 = [&R] (H000,(((H002,((H008,H014),H006),H009),H007,H012,H011),H013),H010,H001,(H003,H005));
+tree PAUP_29 = [&R] (H000,(((((H002,(H007,H012,H011),H009,H006),H008),H014),H013),H001),H010,(H003,H005));
+tree PAUP_30 = [&R] (H000,((((H002,H009),(H008,H006),H014),(H007,H012,H011)),H013),H010,H001,(H003,H005));
+tree PAUP_31 = [&R] (H000,(((((H002,((H007,(H012,H011)),H009)),(H008,H006)),H014),H013),H001),H010,(H003,H005));
+tree PAUP_32 = [&R] (H000,(((((H002,H009),((((H007,H011),H012),H006),H008)),H014),H013),H001),H010,(H003,H005));
+tree PAUP_33 = [&R] (H000,((((H002,((H007,(H012,H011)),H009),H006),H008),H014),H013),H010,H001,(H003,H005));
+tree PAUP_34 = [&R] (H000,(((H002,((H007,(H012,H011)),H009),(H008,H006)),H014),H001),H010,H013,(H003,H005));
+tree PAUP_35 = [&R] (H000,(((((H002,(H008,H006),H014),H009),H007),H012,H011),H013),H010,H001,(H003,H005));
+tree PAUP_36 = [&R] (H000,((((H002,((H007,(H012,H011)),H009),(H008,H006)),H014),H001),H013),H010,(H003,H005));
+tree PAUP_37 = [&R] (H000,(((((H002,H014,H009),(H008,H006)),H012),H007,H011),H013),H010,H001,(H003,H005));
+tree PAUP_38 = [&R] (H000,((((H002,H009),((H008,H006),H014)),(H007,H012,H011)),H013),H010,H001,(H003,H005));
+tree PAUP_39 = [&R] (H000,(((((H002,H009,H006),H008),H014),(H007,H012,H011)),H013),H010,H001,(H003,H005));
+tree PAUP_40 = [&R] (H000,((((H002,H009,H006),(H008,H014)),(H007,H012,H011)),H013),H010,H001,(H003,H005));
+tree PAUP_41 = [&R] (H000,((((H002,H009,H006),H008,H014),(H007,H012,H011)),H013),H010,H001,(H003,H005));
+tree PAUP_42 = [&R] (H000,(((((H002,H014,H009),H008,H006),H012),H007,H011),H013),H010,H001,(H003,H005));
+tree PAUP_43 = [&R] (H000,((((((H002,H009),((H007,H011),H012)),H006),H008),H014),H013),H010,H001,(H003,H005));
+tree PAUP_44 = [&R] (H000,((((H002,H009),((((H007,H011),H012),H006),H008)),H014),H013),H010,H001,(H003,H005));
+tree PAUP_45 = [&R] (H000,(((((H002,H009),(((H007,H011),H012),H006)),H008),H014),H013),H010,H001,(H003,H005));
+tree PAUP_46 = [&R] (H000,(((H002,(((H007,H011),H012),(H008,H006)),H009),H014),H001),H010,H013,(H003,H005));
+tree PAUP_47 = [&R] (H000,((((H002,(((H007,H011),H012),(H008,H006)),H009),H014),H001),H013),H010,(H003,H005));
+tree PAUP_48 = [&R] (H000,(((((H002,(H007,H012,H011),H009),H006),H008),H014),H013),H010,H001,(H003,H005));
+tree PAUP_49 = [&R] (H000,((((H002,((H007,(H012,H011)),H009)),(H008,H006)),H014),H001),H010,H013,(H003,H005));
+tree PAUP_50 = [&R] (H000,(((((H002,((H008,H006),H014)),H009),H007),H012,H011),H013),H010,H001,(H003,H005));
+tree PAUP_51 = [&R] (H000,(((((H002,((H007,(H012,H011)),H009)),(H008,H006)),H014),H001),H013),H010,(H003,H005));
+tree PAUP_52 = [&R] (H000,(((((H002,((H008,H014),H006)),H009),H007),H012,H011),H013),H010,H001,(H003,H005));
+tree PAUP_53 = [&R] (H000,(((((H002,((H007,(H012,H011)),H009)),H006),H008),H014),H001),H010,H013,(H003,H005));
+tree PAUP_54 = [&R] (H000,(((((H002,H009),((H007,H011),H012),H006),H008),H014),H013),H010,H001,(H003,H005));
+tree PAUP_55 = [&R] (H000,((((((H002,((H007,(H012,H011)),H009)),H006),H008),H014),H013),H001),H010,(H003,H005));
+tree PAUP_56 = [&R] (H000,((((((H002,((H007,(H012,H011)),H009)),H006),H008),H014),H001),H013),H010,(H003,H005));
+tree PAUP_57 = [&R] (H000,(((((((H002,H009),H014),H008),H006),H012),H007,H011),H013),H010,H001,(H003,H005));
+tree PAUP_58 = [&R] (H000,(((H002,(H008,H014),H009,H006),H007,H012,H011),H013),H010,H001,(H003,H005));
+tree PAUP_59 = [&R] (H000,((((H002,(H007,H012,H011),H009),(H008,H006)),H014),H001),H010,H013,(H003,H005));
+tree PAUP_60 = [&R] (H000,((((H002,((H007,(H012,H011)),H009),H006),H008),H014),H001),H010,H013,(H003,H005));
+tree PAUP_61 = [&R] (H000,(((H002,(((H007,H011),H012),H008,H006),H009),H014),H001),H010,H013,(H003,H005));
+tree PAUP_62 = [&R] (H000,((((H002,(((H007,H011),H012),H008,H006),H009),H014),H001),H013),H010,(H003,H005));
+tree PAUP_63 = [&R] (H000,(((((H002,(H007,H012,H011),H009),(H008,H006)),H014),H001),H013),H010,(H003,H005));
+tree PAUP_64 = [&R] (H000,(((((H002,(H007,H012,H011),H009,H006),H008),H014),H001),H013),H010,(H003,H005));
+tree PAUP_65 = [&R] (H000,((((H002,(H007,H012,H011),H009,H006),H008),H014),H001),H010,H013,(H003,H005));
+tree PAUP_66 = [&R] (H000,((((H002,(((H007,H011),H012),H006),H009),H008),H014),H013),H010,H001,(H003,H005));
+tree PAUP_67 = [&R] (H000,(((((((H002,H009),((H007,H011),H012)),H006),H008),H014),H013),H001),H010,(H003,H005));
+tree PAUP_68 = [&R] (H000,(((((H002,(((H007,H011),H012),H006),H009),H008),H014),H013),H001),H010,(H003,H005));
+tree PAUP_69 = [&R] (H000,(((((H002,(H007,H012,H011),H009),H006),H008),H014),H001),H010,H013,(H003,H005));
+tree PAUP_70 = [&R] (H000,((((((H002,(H007,H012,H011),H009),H006),H008),H014),H001),H013),H010,(H003,H005));
+tree PAUP_71 = [&R] (H000,((((((H002,H009),(((H007,H011),H012),H006)),H008),H014),H013),H001),H010,(H003,H005));
+tree PAUP_72 = [&R] (H000,((((((H002,H009),((H007,H011),H012),H006),H008),H014),H013),H001),H010,(H003,H005));
+tree PAUP_73 = [&R] (H000,(((((H002,((H007,(H012,H011)),H009),H006),H008),H014),H013),H001),H010,(H003,H005));
+tree PAUP_74 = [&R] (H000,(((((H002,H009),((H008,H014),H006)),H012),H007,H011),H013),H010,H001,(H003,H005));
+tree PAUP_75 = [&R] (H000,((((((H002,H009),(H008,H014)),H006),H012),H007,H011),H013),H010,H001,(H003,H005));
+tree PAUP_76 = [&R] (H000,(((((H002,H009),(H008,H014),H006),H012),H007,H011),H013),H010,H001,(H003,H005));
+tree PAUP_77 = [&R] (H000,((((H002,H009),((((H007,H011),H012),H006),H008)),H014),H001),H010,H013,(H003,H005));
+tree PAUP_78 = [&R] (H000,(((((H002,H009),((((H007,H011),H012),H006),H008)),H014),H001),H013),H010,(H003,H005));
+tree PAUP_79 = [&R] (H000,(((((H002,((H007,(H012,H011)),H009),H006),H008),H014),H001),H013),H010,(H003,H005));
+tree PAUP_80 = [&R] (H000,(((((H002,(H008,H014),H006),H009),H007),H012,H011),H013),H010,H001,(H003,H005));
+tree PAUP_81 = [&R] (H000,(((((H002,(H008,H014),H009),H006),H012),H007,H011),H013),H010,H001,(H003,H005));
+tree PAUP_82 = [&R] (H000,((((((H002,H009),((H007,H011),H012)),H006),H008),H014),H001),H010,H013,(H003,H005));
+tree PAUP_83 = [&R] (H000,(((((((H002,H009),((H007,H011),H012)),H006),H008),H014),H001),H013),H010,(H003,H005));
+tree PAUP_84 = [&R] (H000,(((((H002,H009),(((H007,H011),H012),H006)),H008),H014),H001),H010,H013,(H003,H005));
+tree PAUP_85 = [&R] (H000,((((((H002,H009),(((H007,H011),H012),H006)),H008),H014),H001),H013),H010,(H003,H005));
+tree PAUP_86 = [&R] (H000,(((((H002,(((H007,H011),H012),H006),H009),H008),H014),H001),H013),H010,(H003,H005));
+tree PAUP_87 = [&R] (H000,(((((H002,H009),((H007,H011),H012),H006),H008),H014),H001),H010,H013,(H003,H005));
+tree PAUP_88 = [&R] (H000,((((((H002,H009),((H007,H011),H012),H006),H008),H014),H001),H013),H010,(H003,H005));
+tree PAUP_89 = [&R] (H000,((((H002,(((H007,H011),H012),H006),H009),H008),H014),H001),H010,H013,(H003,H005));
+End;
diff --git a/trunk/test/paup/unrooted_absent/association/1_caco.asso b/trunk/test/paup/unrooted_absent/association/1_caco.asso
new file mode 100644
index 0000000000000000000000000000000000000000..a9ab2d77f841b7568fe93bf41d45fb80c18d99a1
--- /dev/null
+++ b/trunk/test/paup/unrooted_absent/association/1_caco.asso
@@ -0,0 +1,56 @@
+
+ /----* H010 case/control:7/5
+ | Site: 5 Sens: 2-->1
+ |----* H001 case/control:11/9
+ | Site: 1 Sens: 2-->1
+ | Site: 2 Sens: 2-->1
+-----* 16 case/control:102/74
+ |
+ | [0] ddl=3 chi2=1.41 p_value_chi2=0.704
+ | [1] ddl=5 chi2=3.37 p_value_chi2=0.64
+ | [2] ddl=8 chi2=16.00 p_value_chi2=0.035
+ | [3] ddl=11 chi2=17.69 p_value_chi2=0.095
+ | [4] ddl=12 chi2=18.05 p_value_chi2=0.1
+ | /----* H003 case/control:5/6
+ | | Site: 4 Sens: 2-->1
+ |----* 15 case/control:12/13
+ | | Site: 3 Sens: 2-->1
+ | \----* H005 case/control:7/7
+ | Site: 12 Sens: 2-->1
+ | /----* H013 case/control:2/4
+ \----* 17 case/control:72/47
+ | Site: 6 Sens: 2-->1
+ | Site: 7 Sens: 2-->1
+ | /----* H007 case/control:7/13
+ | | Site: 12 Sens: 2-->1
+ | |----* H012 case/control:1/4
+ | | Site: 11 Sens: 2-->1
+ \----* 18 case/control:70/43
+ | Site: 8 Sens: 2-->1
+ | Site: 9 Sens: 2-->1
+ | Site: 10 Sens: 2-->1
+ |----* H011 case/control:5/1
+ | /----* H002 case/control:8/6
+ | | /----* H008 case/control:9/2
+ | | | Site: 11 Sens: 2-->1
+ | |----* 19 case/control:13/4
+ | | | Site: 9 Sens: 1-->2
+ | | \----* H014 case/control:4/2
+ | | Site: 10 Sens: 1-->2
+ \----* 20 case/control:57/25
+ | Site: 1 Sens: 2-->1
+ | Site: 2 Sens: 2-->1
+ |----* H009 case/control:8/2
+ | Site: 12 Sens: 2-->1
+ \----* H006 case/control:28/13
+ Site: 11 Sens: 2-->1
+
+ Number of permutation: 1
+
+p_val for each level:
+level 1 p-value (non corrected) 0
+level 2 p-value (non corrected) 0.5
+level 3 p-value (non corrected) 0
+level 4 p-value (non corrected) 0
+level 5 p-value (non corrected) 0
+corrected minimal p_value in the tree: 0.5
diff --git a/trunk/test/paup/unrooted_absent/association/caco.paup b/trunk/test/paup/unrooted_absent/association/caco.paup
new file mode 100644
index 0000000000000000000000000000000000000000..701839fd3aa272b2dbf70907f16f639413f230d4
--- /dev/null
+++ b/trunk/test/paup/unrooted_absent/association/caco.paup
@@ -0,0 +1,36 @@
+#Nexus
+Begin data;
+dimension ntax=14 nchar=12;
+format symbols="0123456789" missing=?;
+matrix
+H002 112221111122
+H010 222212222222
+H007 222221111121
+H008 112221112112
+H014 112221112222
+H013 222221122222
+H001 112222222222
+H003 221122222222
+[H000 222222222222]
+H005 221222222221
+H012 222221111112
+H009 112221111121
+H006 112221111112
+H011 222221111122
+H000 222222222222
+;
+end;
+begin assumptions;
+end;
+begin paup;
+set nowarnreset autoclose maxtrees = 2000 increase= no [- Auto AutoInc = 100] monitor = no taxlabels = full warnroot=no opt=deltran [- acctran];
+hsearch;
+savetrees from=1 to=1000 file= test.tree root=no format=altnexus;
+cleartrees nowarn=yes;
+gettrees rooted=no file=test.tree;
+log file = test.res.log replace= yes [- no];
+describetrees all /plot=cladogram [- phylogram] brlens=yes apolist=yes;
+log stop;
+end;
+quit;
+[WARNING, this file is designed for bi-allelic data. If it is not the case, you may have to modify this input file, for example by specifying the ordered option in the typeset command in the assumption block]
diff --git a/trunk/test/paup/unrooted_absent/association/nb_cas_control.txt b/trunk/test/paup/unrooted_absent/association/nb_cas_control.txt
new file mode 100644
index 0000000000000000000000000000000000000000..ec9b7d90b0f6fc3983260c38f77f3bd42b037c09
--- /dev/null
+++ b/trunk/test/paup/unrooted_absent/association/nb_cas_control.txt
@@ -0,0 +1,13 @@
+H002 m008 c006
+H010 m007 c005
+H007 m007 c013
+H008 m009 c002
+H014 m004 c002
+H013 m002 c004
+H001 m011 c009
+H003 m005 c006
+H005 m007 c007
+H012 m001 c004
+H009 m008 c002
+H006 m028 c013
+H011 m005 c001
diff --git a/trunk/test/paup/unrooted_absent/association/run_altree b/trunk/test/paup/unrooted_absent/association/run_altree
new file mode 100755
index 0000000000000000000000000000000000000000..69c20ec3ed535841353f5717e7d2f6ec1f0813f6
--- /dev/null
+++ b/trunk/test/paup/unrooted_absent/association/run_altree
@@ -0,0 +1,11 @@
+#!/bin/sh -x
+
+# To run paup
+paup caco.paup
+
+# To perform the association test
+# The outgroup is specified (option --outgroup) because the tree must be
+# rooted for the test but it is removed before the tree analysis
+../../../../altree -i test.res.log -j nb_cas_control.txt -a -t SNP \
+ --outgroup H000 --remove-outgroup -p paup -r 1 --tree-to-analyse 1\
+ -o 1_caco.asso
diff --git a/trunk/test/paup/unrooted_absent/association/test.res.log b/trunk/test/paup/unrooted_absent/association/test.res.log
new file mode 100644
index 0000000000000000000000000000000000000000..020ee74370c0eb70c95fe9e153abc660c9a876b0
--- /dev/null
+++ b/trunk/test/paup/unrooted_absent/association/test.res.log
@@ -0,0 +1,8386 @@
+
+P A U P *
+Portable version 4.0b10 for Unix
+Tue Jan 10 20:34:54 2006
+
+ -----------------------------NOTICE-----------------------------
+ This is a beta-test version. Please report any crashes,
+ apparent calculation errors, or other anomalous results.
+ There are no restrictions on publication of results obtained
+ with this version, but you should check the WWW site
+ frequently for bug announcements and/or updated versions.
+ See the README file on the distribution media for details.
+ ----------------------------------------------------------------
+
+Tree description:
+
+ Unrooted tree(s) rooted using outgroup method
+ Optimality criterion = parsimony
+ Character-status summary:
+ Of 12 total characters:
+ All characters are of type 'unord'
+ All characters have equal weight
+ 2 characters are parsimony-uninformative
+ Number of parsimony-informative characters = 10
+ Character-state optimization: Delayed transformation (DELTRAN)
+
+Tree number 1 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #1 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 20 0 0 0
+ 18 20 2 2 2
+ 17 18 3 3 3
+ 16 17 2 2 2
+H010 (2) 16 1 1 1
+H001 (7) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H013 (6) 17 0 0 0
+H007 (3) 18 1 1 1
+H012 (10) 18 1 1 1
+H011 (13) 18 0 0 0
+ 19 20 1 1 1
+H008 (4) 19 1 1 1
+H014 (5) 19 1 1 1
+H009 (11) 20 1 1 1
+H006 (12) 20 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /----------------------------- H010
+| |
+| +----------------------------- H001
+| |
+| /-------------16 /--------------- H003
+| | +------------15
+| | | \--------------- H005
+| /------------17 |
+| | | \----------------------------- H000
+| | |
+| | \-------------------------------------------- H013
+20 |
++-------------18---------------------------------------------------------- H007
+| |
+| +---------------------------------------------------------- H012
+| |
+| \---------------------------------------------------------- H011
+|
+| /--------------- H008
++--------------------------------------------------------19
+| \--------------- H014
+|
++------------------------------------------------------------------------- H009
+|
+\------------------------------------------------------------------------- H006
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_20 --> node_18 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_18 --> node_17 8 1 1.000 1 ==> 2
+ 9 1 0.500 1 ==> 2
+ 10 1 0.500 1 ==> 2
+ node_17 --> node_16 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_18 --> H007 12 1 0.333 2 ==> 1
+ node_18 --> H012 11 1 0.333 2 ==> 1
+ node_20 --> node_19 9 1 0.500 1 ==> 2
+ node_19 --> H008 11 1 0.333 2 ==> 1
+ node_19 --> H014 10 1 0.500 1 ==> 2
+ node_20 --> H009 12 1 0.333 2 ==> 1
+ node_20 --> H006 11 1 0.333 2 ==> 1
+
+Tree number 2 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #2 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 22 0 0 0
+ 20 22 1 1 1
+ 19 20 1 1 1
+ 18 19 1 1 3
+ 17 18 2 2 2
+ 16 17 2 0 2
+H010 (2) 16 1 1 1
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H001 (7) 17 0 0 2
+H013 (6) 18 2 0 2
+H014 (5) 19 0 0 0
+H008 (4) 20 1 1 1
+ 21 22 2 2 2
+H007 (3) 21 1 1 1
+H012 (10) 21 1 1 1
+H011 (13) 21 0 0 0
+H009 (11) 22 1 1 1
+H006 (12) 22 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /--------------------- H010
+| |
+| | /---------- H003
+| /--------16---------15
+| | | \---------- H005
+| | |
+| /---------17 \--------------------- H000
+| | |
+| /--------18 \------------------------------- H001
+| | |
+| /---------19 \------------------------------------------ H013
+22 | |
++--------20 \---------------------------------------------------- H014
+| |
+| \--------------------------------------------------------------- H008
+|
+| /---------- H007
+| |
++-------------------------------------------------------------21---------- H012
+| |
+| \---------- H011
+|
++------------------------------------------------------------------------- H009
+|
+\------------------------------------------------------------------------- H006
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_20 9 1 1.000 1 ==> 2
+ node_20 --> node_19 10 1 1.000 1 ==> 2
+ node_19 --> node_18 8 1 1.000 1 ==> 2
+ node_18 --> node_17 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_17 --> node_16 1 1 0.333 1 --> 2
+ 2 1 0.333 1 --> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_18 --> H013 1 1 0.333 1 --> 2
+ 2 1 0.333 1 --> 2
+ node_20 --> H008 11 1 0.333 2 ==> 1
+ node_22 --> node_21 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_21 --> H007 12 1 0.333 2 ==> 1
+ node_21 --> H012 11 1 0.333 2 ==> 1
+ node_22 --> H009 12 1 0.333 2 ==> 1
+ node_22 --> H006 11 1 0.333 2 ==> 1
+
+Tree number 3 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #3 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 21 0 0 0
+ 18 21 2 2 2
+ 17 18 3 3 3
+ 16 17 2 2 2
+H010 (2) 16 1 1 1
+H001 (7) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H013 (6) 17 0 0 0
+H007 (3) 18 1 1 1
+H012 (10) 18 1 1 1
+H011 (13) 18 0 0 0
+ 20 21 0 0 1
+ 19 20 1 1 1
+H008 (4) 19 1 0 1
+H014 (5) 19 1 1 2
+H006 (12) 20 1 0 1
+H009 (11) 21 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /----------------------------- H010
+| |
+| +----------------------------- H001
+| |
+| /-------------16 /--------------- H003
+| | +------------15
+| | | \--------------- H005
+| /------------17 |
+| | | \----------------------------- H000
+| | |
+| | \-------------------------------------------- H013
+21 |
++-------------18---------------------------------------------------------- H007
+| |
+| +---------------------------------------------------------- H012
+| |
+| \---------------------------------------------------------- H011
+|
+| /--------------- H008
+| /------------19
+| | \--------------- H014
++------------------------------------------20
+| \----------------------------- H006
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_18 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_18 --> node_17 8 1 1.000 1 ==> 2
+ 9 1 0.500 1 ==> 2
+ 10 1 0.500 1 ==> 2
+ node_17 --> node_16 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_18 --> H007 12 1 0.333 2 ==> 1
+ node_18 --> H012 11 1 0.333 2 ==> 1
+ node_20 --> node_19 9 1 0.500 1 ==> 2
+ node_19 --> H008 11 1 0.333 2 --> 1
+ node_19 --> H014 10 1 0.500 1 ==> 2
+ node_20 --> H006 11 1 0.333 2 --> 1
+ node_21 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 4 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #4 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 22 0 0 0
+ 21 22 0 0 1
+ 19 21 2 2 2
+ 18 19 0 0 1
+ 17 18 3 3 3
+ 16 17 2 2 2
+H010 (2) 16 1 1 1
+H001 (7) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H013 (6) 17 0 0 0
+H007 (3) 18 1 1 1
+H011 (13) 18 0 0 0
+H012 (10) 19 1 0 1
+ 20 21 1 1 1
+H008 (4) 20 1 0 1
+H014 (5) 20 1 1 2
+H006 (12) 21 1 0 1
+H009 (11) 22 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /--------------------- H010
+| |
+| +--------------------- H001
+| |
+| /--------16 /---------- H003
+| | +---------15
+| | | \---------- H005
+| /---------17 |
+| | | \--------------------- H000
+| | |
+| | \------------------------------- H013
+22 /--------18
+| | +------------------------------------------ H007
+| | |
+| /---------19 \------------------------------------------ H011
+| | |
+| | \---------------------------------------------------- H012
+| |
++--------21 /---------- H008
+| +---------------------------------------------------20
+| | \---------- H014
+| |
+| \--------------------------------------------------------------- H006
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_19 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_18 --> node_17 8 1 1.000 1 ==> 2
+ 9 1 0.500 1 ==> 2
+ 10 1 0.500 1 ==> 2
+ node_17 --> node_16 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_18 --> H007 12 1 0.333 2 ==> 1
+ node_19 --> H012 11 1 0.333 2 --> 1
+ node_21 --> node_20 9 1 0.500 1 ==> 2
+ node_20 --> H008 11 1 0.333 2 --> 1
+ node_20 --> H014 10 1 0.500 1 ==> 2
+ node_21 --> H006 11 1 0.333 2 --> 1
+ node_22 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 5 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #5 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 23 0 0 0
+ 22 23 0 0 1
+ 19 22 2 2 2
+ 18 19 0 0 1
+ 17 18 3 3 3
+ 16 17 2 2 2
+H010 (2) 16 1 1 1
+H001 (7) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H013 (6) 17 0 0 0
+H007 (3) 18 1 1 1
+H011 (13) 18 0 0 0
+H012 (10) 19 1 0 1
+ 21 22 0 0 1
+ 20 21 1 1 1
+H008 (4) 20 1 0 1
+H014 (5) 20 1 1 2
+H006 (12) 21 1 0 1
+H009 (11) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /--------------------- H010
+| |
+| +--------------------- H001
+| |
+| /--------16 /---------- H003
+| | +---------15
+| | | \---------- H005
+| /---------17 |
+| | | \--------------------- H000
+| | |
+| | \------------------------------- H013
+23 /--------18
+| | +------------------------------------------ H007
+| | |
+| /---------19 \------------------------------------------ H011
+| | |
+| | \---------------------------------------------------- H012
+| |
++--------22 /---------- H008
+| | /---------20
+| | | \---------- H014
+| \----------------------------------------21
+| \--------------------- H006
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_19 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_18 --> node_17 8 1 1.000 1 ==> 2
+ 9 1 0.500 1 ==> 2
+ 10 1 0.500 1 ==> 2
+ node_17 --> node_16 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_18 --> H007 12 1 0.333 2 ==> 1
+ node_19 --> H012 11 1 0.333 2 --> 1
+ node_21 --> node_20 9 1 0.500 1 ==> 2
+ node_20 --> H008 11 1 0.333 2 --> 1
+ node_20 --> H014 10 1 0.500 1 ==> 2
+ node_21 --> H006 11 1 0.333 2 --> 1
+ node_23 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 6 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #6 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 22 0 0 0
+ 21 22 0 0 1
+ 19 21 2 2 2
+ 17 19 3 2 3
+ 16 17 2 2 2
+H010 (2) 16 1 1 1
+H001 (7) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H013 (6) 17 0 0 0
+ 18 19 0 0 1
+H007 (3) 18 1 1 1
+H012 (10) 18 1 1 1
+H011 (13) 18 0 0 0
+ 20 21 1 0 1
+H008 (4) 20 1 1 1
+H014 (5) 20 1 1 1
+H009 (11) 22 1 1 1
+H006 (12) 22 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------------ H010
+| |
+| +------------------------ H001
+| |
+| /----------16 /------------ H003
+| | +----------15
+| | | \------------ H005
+| /-----------17 |
+| | | \------------------------ H000
+| | |
+| | \------------------------------------ H013
+22 /----------19
+| | | /------------ H007
+| | | |
+| | \-----------------------------------18------------ H012
++----------21 |
+| | \------------ H011
+| |
+| | /------------ H008
+| \-----------------------------------------------20
+| \------------ H014
+|
++------------------------------------------------------------------------- H009
+|
+\------------------------------------------------------------------------- H006
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_19 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_19 --> node_17 8 1 1.000 1 ==> 2
+ 9 1 0.500 1 --> 2
+ 10 1 0.500 1 ==> 2
+ node_17 --> node_16 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_18 --> H007 12 1 0.333 2 ==> 1
+ node_18 --> H012 11 1 0.333 2 ==> 1
+ node_21 --> node_20 9 1 0.500 1 --> 2
+ node_20 --> H008 11 1 0.333 2 ==> 1
+ node_20 --> H014 10 1 0.500 1 ==> 2
+ node_22 --> H009 12 1 0.333 2 ==> 1
+ node_22 --> H006 11 1 0.333 2 ==> 1
+
+Tree number 7 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #7 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 21 0 0 0
+ 20 21 1 1 1
+ 19 20 2 2 2
+ 17 19 2 2 2
+ 16 17 2 2 2
+H010 (2) 16 1 1 1
+H001 (7) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H013 (6) 17 0 0 0
+ 18 19 1 1 1
+H007 (3) 18 1 1 1
+H012 (10) 18 1 1 1
+H011 (13) 18 0 0 0
+H008 (4) 20 1 1 1
+H014 (5) 20 1 1 1
+H009 (11) 21 1 1 1
+H006 (12) 21 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------------ H010
+| |
+| +------------------------ H001
+| |
+| /----------16 /------------ H003
+| | +----------15
+| | | \------------ H005
+| /-----------17 |
+| | | \------------------------ H000
+| | |
+| | \------------------------------------ H013
+21 /----------19
+| | | /------------ H007
+| | | |
+| | \-----------------------------------18------------ H012
+| | |
++----------20 \------------ H011
+| |
+| +------------------------------------------------------------- H008
+| |
+| \------------------------------------------------------------- H014
+|
++------------------------------------------------------------------------- H009
+|
+\------------------------------------------------------------------------- H006
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_20 9 1 0.500 1 ==> 2
+ node_20 --> node_19 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_19 --> node_17 8 1 1.000 1 ==> 2
+ 10 1 0.500 1 ==> 2
+ node_17 --> node_16 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_19 --> node_18 9 1 0.500 2 ==> 1
+ node_18 --> H007 12 1 0.333 2 ==> 1
+ node_18 --> H012 11 1 0.333 2 ==> 1
+ node_20 --> H008 11 1 0.333 2 ==> 1
+ node_20 --> H014 10 1 0.500 1 ==> 2
+ node_21 --> H009 12 1 0.333 2 ==> 1
+ node_21 --> H006 11 1 0.333 2 ==> 1
+
+Tree number 8 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #8 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 23 0 0 0
+ 22 23 0 0 1
+ 21 22 1 1 1
+ 20 21 0 0 2
+ 19 20 2 2 2
+ 17 19 2 1 2
+ 16 17 2 2 2
+H010 (2) 16 1 1 1
+H001 (7) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H013 (6) 17 0 0 0
+ 18 19 1 1 2
+H007 (3) 18 1 1 1
+H012 (10) 18 1 1 1
+H011 (13) 18 0 0 0
+H014 (5) 20 1 0 1
+H008 (4) 21 1 0 1
+H006 (12) 22 1 0 1
+H009 (11) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------ H010
+| |
+| +------------------ H001
+| |
+| /-------16 /--------- H003
+| | +-------15
+| | | \--------- H005
+| /--------17 |
+| | | \------------------ H000
+| | |
+| | \--------------------------- H013
+23 /-------19
+| | | /--------- H007
+| | | |
+| | \--------------------------18--------- H012
+| /-------20 |
+| | | \--------- H011
+| | |
+| /-------21 \---------------------------------------------- H014
+| | |
++-------22 \------------------------------------------------------- H008
+| |
+| \---------------------------------------------------------------- H006
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_21 9 1 0.500 1 ==> 2
+ node_20 --> node_19 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_19 --> node_17 8 1 1.000 1 ==> 2
+ 10 1 0.500 1 --> 2
+ node_17 --> node_16 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_19 --> node_18 9 1 0.500 2 ==> 1
+ node_18 --> H007 12 1 0.333 2 ==> 1
+ node_18 --> H012 11 1 0.333 2 ==> 1
+ node_20 --> H014 10 1 0.500 1 --> 2
+ node_21 --> H008 11 1 0.333 2 --> 1
+ node_22 --> H006 11 1 0.333 2 --> 1
+ node_23 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 9 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #9 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 23 0 0 0
+ 20 23 0 0 1
+ 19 20 2 2 2
+ 18 19 0 0 1
+ 17 18 3 3 3
+ 16 17 2 2 2
+H010 (2) 16 1 1 1
+H001 (7) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H013 (6) 17 0 0 0
+H012 (10) 18 1 1 1
+H011 (13) 18 0 0 0
+H007 (3) 19 1 0 1
+H009 (11) 20 1 0 1
+ 22 23 0 0 1
+ 21 22 1 1 1
+H008 (4) 21 1 0 1
+H014 (5) 21 1 1 2
+H006 (12) 22 1 0 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /--------------------- H010
+| |
+| +--------------------- H001
+| |
+| /--------16 /---------- H003
+| | +---------15
+| | | \---------- H005
+| /---------17 |
+| | | \--------------------- H000
+| | |
+| | \------------------------------- H013
+23 /--------18
+| | +------------------------------------------ H012
+| | |
+| /---------19 \------------------------------------------ H011
+| | |
++--------20 \---------------------------------------------------- H007
+| |
+| \--------------------------------------------------------------- H009
+|
+| /---------- H008
+| /---------21
+| | \---------- H014
+\--------------------------------------------------22
+ \--------------------- H006
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_20 --> node_19 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_18 --> node_17 8 1 1.000 1 ==> 2
+ 9 1 0.500 1 ==> 2
+ 10 1 0.500 1 ==> 2
+ node_17 --> node_16 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_18 --> H012 11 1 0.333 2 ==> 1
+ node_19 --> H007 12 1 0.333 2 --> 1
+ node_20 --> H009 12 1 0.333 2 --> 1
+ node_22 --> node_21 9 1 0.500 1 ==> 2
+ node_21 --> H008 11 1 0.333 2 --> 1
+ node_21 --> H014 10 1 0.500 1 ==> 2
+ node_22 --> H006 11 1 0.333 2 --> 1
+
+Tree number 10 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #10 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 21 0 0 0
+ 18 21 2 2 2
+ 17 18 3 3 3
+ 16 17 2 2 2
+H010 (2) 16 1 1 1
+H001 (7) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H013 (6) 17 0 0 0
+H007 (3) 18 1 1 1
+H012 (10) 18 1 1 1
+H011 (13) 18 0 0 0
+ 20 21 0 0 1
+ 19 20 1 1 1
+H008 (4) 19 1 0 1
+H006 (12) 19 0 0 1
+H014 (5) 20 2 1 2
+H009 (11) 21 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /----------------------------- H010
+| |
+| +----------------------------- H001
+| |
+| /-------------16 /--------------- H003
+| | +------------15
+| | | \--------------- H005
+| /------------17 |
+| | | \----------------------------- H000
+| | |
+| | \-------------------------------------------- H013
+21 |
++-------------18---------------------------------------------------------- H007
+| |
+| +---------------------------------------------------------- H012
+| |
+| \---------------------------------------------------------- H011
+|
+| /--------------- H008
+| /------------19
+| | \--------------- H006
++------------------------------------------20
+| \----------------------------- H014
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_18 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_18 --> node_17 8 1 1.000 1 ==> 2
+ 9 1 0.333 1 ==> 2
+ 10 1 0.500 1 ==> 2
+ node_17 --> node_16 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_18 --> H007 12 1 0.333 2 ==> 1
+ node_18 --> H012 11 1 0.500 2 ==> 1
+ node_20 --> node_19 11 1 0.500 2 ==> 1
+ node_19 --> H008 9 1 0.333 1 --> 2
+ node_20 --> H014 9 1 0.333 1 --> 2
+ 10 1 0.500 1 ==> 2
+ node_21 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 11 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #11 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 23 0 0 0
+ 22 23 0 0 1
+ 20 22 0 0 1
+ 19 20 2 2 2
+ 18 19 0 0 1
+ 17 18 3 3 3
+ 16 17 2 2 2
+H010 (2) 16 1 1 1
+H001 (7) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H013 (6) 17 0 0 0
+H007 (3) 18 1 1 1
+H011 (13) 18 0 0 0
+H012 (10) 19 1 0 1
+H006 (12) 20 1 0 1
+ 21 22 1 1 1
+H008 (4) 21 1 0 1
+H014 (5) 21 1 1 2
+H009 (11) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------ H010
+| |
+| +------------------ H001
+| |
+| /-------16 /--------- H003
+| | +-------15
+| | | \--------- H005
+| /--------17 |
+| | | \------------------ H000
+| | |
+| | \--------------------------- H013
+23 /-------18
+| | +------------------------------------- H007
+| | |
+| /-------19 \------------------------------------- H011
+| | |
+| /-------20 \---------------------------------------------- H012
+| | |
+| | \------------------------------------------------------- H006
++-------22
+| | /--------- H008
+| \-----------------------------------------------------21
+| \--------- H014
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_20 --> node_19 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_18 --> node_17 8 1 1.000 1 ==> 2
+ 9 1 0.500 1 ==> 2
+ 10 1 0.500 1 ==> 2
+ node_17 --> node_16 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_18 --> H007 12 1 0.333 2 ==> 1
+ node_19 --> H012 11 1 0.333 2 --> 1
+ node_20 --> H006 11 1 0.333 2 --> 1
+ node_22 --> node_21 9 1 0.500 1 ==> 2
+ node_21 --> H008 11 1 0.333 2 --> 1
+ node_21 --> H014 10 1 0.500 1 ==> 2
+ node_23 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 12 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #12 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 20 0 0 0
+ 18 20 2 2 2
+ 17 18 3 3 3
+ 16 17 2 2 2
+H010 (2) 16 1 1 1
+H001 (7) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H013 (6) 17 0 0 0
+H007 (3) 18 1 1 1
+H012 (10) 18 1 1 1
+H011 (13) 18 0 0 0
+ 19 20 1 1 1
+H008 (4) 19 1 1 1
+H006 (12) 19 0 0 0
+H014 (5) 20 2 2 2
+H009 (11) 20 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /----------------------------- H010
+| |
+| +----------------------------- H001
+| |
+| /-------------16 /--------------- H003
+| | +------------15
+| | | \--------------- H005
+| /------------17 |
+| | | \----------------------------- H000
+| | |
+| | \-------------------------------------------- H013
+20 |
++-------------18---------------------------------------------------------- H007
+| |
+| +---------------------------------------------------------- H012
+| |
+| \---------------------------------------------------------- H011
+|
+| /--------------- H008
++--------------------------------------------------------19
+| \--------------- H006
+|
++------------------------------------------------------------------------- H014
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_20 --> node_18 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_18 --> node_17 8 1 1.000 1 ==> 2
+ 9 1 0.333 1 ==> 2
+ 10 1 0.500 1 ==> 2
+ node_17 --> node_16 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_18 --> H007 12 1 0.333 2 ==> 1
+ node_18 --> H012 11 1 0.500 2 ==> 1
+ node_20 --> node_19 11 1 0.500 2 ==> 1
+ node_19 --> H008 9 1 0.333 1 ==> 2
+ node_20 --> H014 9 1 0.333 1 ==> 2
+ 10 1 0.500 1 ==> 2
+ node_20 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 13 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #13 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 22 0 0 0
+ 20 22 1 1 1
+ 19 20 1 1 1
+ 18 19 1 1 3
+ 17 18 2 2 2
+ 16 17 2 0 2
+H010 (2) 16 1 1 1
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H013 (6) 17 0 0 2
+H001 (7) 18 2 0 2
+H014 (5) 19 0 0 0
+H008 (4) 20 1 1 1
+ 21 22 2 2 2
+H007 (3) 21 1 1 1
+H012 (10) 21 1 1 1
+H011 (13) 21 0 0 0
+H009 (11) 22 1 1 1
+H006 (12) 22 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /--------------------- H010
+| |
+| | /---------- H003
+| /--------16---------15
+| | | \---------- H005
+| | |
+| /---------17 \--------------------- H000
+| | |
+| /--------18 \------------------------------- H013
+| | |
+| /---------19 \------------------------------------------ H001
+22 | |
++--------20 \---------------------------------------------------- H014
+| |
+| \--------------------------------------------------------------- H008
+|
+| /---------- H007
+| |
++-------------------------------------------------------------21---------- H012
+| |
+| \---------- H011
+|
++------------------------------------------------------------------------- H009
+|
+\------------------------------------------------------------------------- H006
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_20 9 1 1.000 1 ==> 2
+ node_20 --> node_19 10 1 1.000 1 ==> 2
+ node_19 --> node_18 8 1 1.000 1 ==> 2
+ node_18 --> node_17 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_17 --> node_16 6 1 0.500 1 --> 2
+ 7 1 0.500 1 --> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_18 --> H001 6 1 0.500 1 --> 2
+ 7 1 0.500 1 --> 2
+ node_20 --> H008 11 1 0.333 2 ==> 1
+ node_22 --> node_21 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_21 --> H007 12 1 0.333 2 ==> 1
+ node_21 --> H012 11 1 0.333 2 ==> 1
+ node_22 --> H009 12 1 0.333 2 ==> 1
+ node_22 --> H006 11 1 0.333 2 ==> 1
+
+Tree number 14 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #14 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 21 0 0 0
+ 19 21 1 1 1
+ 18 19 1 1 1
+ 17 18 3 3 3
+ 16 17 2 2 2
+H010 (2) 16 1 1 1
+H013 (6) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H001 (7) 17 0 0 0
+H014 (5) 18 0 0 0
+H008 (4) 19 1 1 1
+ 20 21 2 2 2
+H007 (3) 20 1 1 1
+H012 (10) 20 1 1 1
+H011 (13) 20 0 0 0
+H009 (11) 21 1 1 1
+H006 (12) 21 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------------ H010
+| |
+| +------------------------ H013
+| |
+| /----------16 /------------ H003
+| | +----------15
+| | | \------------ H005
+| /-----------17 |
+| | | \------------------------ H000
+| | |
+| /----------18 \------------------------------------ H001
+21 | |
++----------19 \------------------------------------------------- H014
+| |
+| \------------------------------------------------------------- H008
+|
+| /------------ H007
+| |
++-----------------------------------------------------------20------------ H012
+| |
+| \------------ H011
+|
++------------------------------------------------------------------------- H009
+|
+\------------------------------------------------------------------------- H006
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_19 9 1 1.000 1 ==> 2
+ node_19 --> node_18 10 1 1.000 1 ==> 2
+ node_18 --> node_17 6 1 0.500 1 ==> 2
+ 7 1 0.500 1 ==> 2
+ 8 1 1.000 1 ==> 2
+ node_17 --> node_16 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_19 --> H008 11 1 0.333 2 ==> 1
+ node_21 --> node_20 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_20 --> H007 12 1 0.333 2 ==> 1
+ node_20 --> H012 11 1 0.333 2 ==> 1
+ node_21 --> H009 12 1 0.333 2 ==> 1
+ node_21 --> H006 11 1 0.333 2 ==> 1
+
+Tree number 15 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #15 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 21 0 0 0
+ 19 21 1 1 1
+ 18 19 1 1 1
+ 17 18 3 3 3
+ 16 17 2 2 2
+H010 (2) 16 1 1 1
+H001 (7) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H013 (6) 17 0 0 0
+H014 (5) 18 0 0 0
+H008 (4) 19 1 1 1
+ 20 21 2 2 2
+H007 (3) 20 1 1 1
+H012 (10) 20 1 1 1
+H011 (13) 20 0 0 0
+H009 (11) 21 1 1 1
+H006 (12) 21 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------------ H010
+| |
+| +------------------------ H001
+| |
+| /----------16 /------------ H003
+| | +----------15
+| | | \------------ H005
+| /-----------17 |
+| | | \------------------------ H000
+| | |
+| /----------18 \------------------------------------ H013
+21 | |
++----------19 \------------------------------------------------- H014
+| |
+| \------------------------------------------------------------- H008
+|
+| /------------ H007
+| |
++-----------------------------------------------------------20------------ H012
+| |
+| \------------ H011
+|
++------------------------------------------------------------------------- H009
+|
+\------------------------------------------------------------------------- H006
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_19 9 1 1.000 1 ==> 2
+ node_19 --> node_18 10 1 1.000 1 ==> 2
+ node_18 --> node_17 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ 8 1 1.000 1 ==> 2
+ node_17 --> node_16 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_19 --> H008 11 1 0.333 2 ==> 1
+ node_21 --> node_20 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_20 --> H007 12 1 0.333 2 ==> 1
+ node_20 --> H012 11 1 0.333 2 ==> 1
+ node_21 --> H009 12 1 0.333 2 ==> 1
+ node_21 --> H006 11 1 0.333 2 ==> 1
+
+Tree number 16 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #16 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 22 0 0 0
+ 19 22 2 2 2
+ 18 19 1 1 3
+ 17 18 2 2 2
+ 16 17 2 0 2
+H010 (2) 16 1 1 1
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H001 (7) 17 0 0 2
+H013 (6) 18 2 0 2
+H014 (5) 19 0 0 0
+ 20 22 2 2 2
+H007 (3) 20 1 1 1
+H012 (10) 20 1 1 1
+H011 (13) 20 0 0 0
+ 21 22 1 1 1
+H008 (4) 21 1 1 1
+H006 (12) 21 0 0 0
+H009 (11) 22 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------------ H010
+| |
+| | /------------ H003
+| /----------16----------15
+| | | \------------ H005
+| | |
+| /-----------17 \------------------------ H000
+| | |
+| /----------18 \------------------------------------ H001
+| | |
++----------19 \------------------------------------------------- H013
+22 |
+| \------------------------------------------------------------- H014
+|
+| /------------ H007
+| |
++-----------------------------------------------------------20------------ H012
+| |
+| \------------ H011
+|
+| /------------ H008
++-----------------------------------------------------------21
+| \------------ H006
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_19 9 1 0.500 1 ==> 2
+ 10 1 1.000 1 ==> 2
+ node_19 --> node_18 8 1 1.000 1 ==> 2
+ node_18 --> node_17 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_17 --> node_16 1 1 0.333 1 --> 2
+ 2 1 0.333 1 --> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_18 --> H013 1 1 0.333 1 --> 2
+ 2 1 0.333 1 --> 2
+ node_22 --> node_20 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_20 --> H007 12 1 0.333 2 ==> 1
+ node_20 --> H012 11 1 0.500 2 ==> 1
+ node_22 --> node_21 11 1 0.500 2 ==> 1
+ node_21 --> H008 9 1 0.500 1 ==> 2
+ node_22 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 17 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #17 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 24 0 0 0
+ 20 24 1 1 1
+ 19 20 1 1 1
+ 18 19 1 1 3
+ 17 18 2 2 2
+ 16 17 2 0 2
+H010 (2) 16 1 1 1
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H001 (7) 17 0 0 2
+H013 (6) 18 2 0 2
+H014 (5) 19 0 0 0
+H008 (4) 20 1 1 1
+ 23 24 0 0 1
+ 22 23 2 2 2
+ 21 22 0 0 1
+H007 (3) 21 1 1 1
+H011 (13) 21 0 0 0
+H012 (10) 22 1 0 1
+H006 (12) 23 1 0 1
+H009 (11) 24 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /--------------------- H010
+| |
+| | /---------- H003
+| /--------16---------15
+| | | \---------- H005
+| | |
+| /---------17 \--------------------- H000
+| | |
+| /--------18 \------------------------------- H001
+| | |
+| /---------19 \------------------------------------------ H013
+24 | |
++--------20 \---------------------------------------------------- H014
+| |
+| \--------------------------------------------------------------- H008
+|
+| /---------- H007
+| /---------21
+| | \---------- H011
+| /--------22
+| | \--------------------- H012
++----------------------------------------23
+| \------------------------------- H006
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_24 --> node_20 9 1 1.000 1 ==> 2
+ node_20 --> node_19 10 1 1.000 1 ==> 2
+ node_19 --> node_18 8 1 1.000 1 ==> 2
+ node_18 --> node_17 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_17 --> node_16 1 1 0.333 1 --> 2
+ 2 1 0.333 1 --> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_18 --> H013 1 1 0.333 1 --> 2
+ 2 1 0.333 1 --> 2
+ node_20 --> H008 11 1 0.333 2 ==> 1
+ node_23 --> node_22 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_21 --> H007 12 1 0.333 2 ==> 1
+ node_22 --> H012 11 1 0.333 2 --> 1
+ node_23 --> H006 11 1 0.333 2 --> 1
+ node_24 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 18 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #18 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 22 0 0 0
+ 21 22 1 1 1
+ 20 21 0 0 1
+ 19 20 2 2 2
+ 17 19 2 1 2
+ 16 17 2 2 2
+H010 (2) 16 1 1 1
+H001 (7) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H013 (6) 17 0 0 0
+ 18 19 1 1 2
+H007 (3) 18 1 1 1
+H012 (10) 18 1 1 1
+H011 (13) 18 0 0 0
+H014 (5) 20 1 0 1
+H008 (4) 21 1 1 1
+H009 (11) 22 1 1 1
+H006 (12) 22 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /--------------------- H010
+| |
+| +--------------------- H001
+| |
+| /--------16 /---------- H003
+| | +---------15
+| | | \---------- H005
+| /---------17 |
+| | | \--------------------- H000
+| | |
+| | \------------------------------- H013
+22 /--------19
+| | | /---------- H007
+| | | |
+| | \------------------------------18---------- H012
+| /---------20 |
+| | | \---------- H011
+| | |
++--------21 \---------------------------------------------------- H014
+| |
+| \--------------------------------------------------------------- H008
+|
++------------------------------------------------------------------------- H009
+|
+\------------------------------------------------------------------------- H006
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_21 9 1 0.500 1 ==> 2
+ node_20 --> node_19 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_19 --> node_17 8 1 1.000 1 ==> 2
+ 10 1 0.500 1 --> 2
+ node_17 --> node_16 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_19 --> node_18 9 1 0.500 2 ==> 1
+ node_18 --> H007 12 1 0.333 2 ==> 1
+ node_18 --> H012 11 1 0.333 2 ==> 1
+ node_20 --> H014 10 1 0.500 1 --> 2
+ node_21 --> H008 11 1 0.333 2 ==> 1
+ node_22 --> H009 12 1 0.333 2 ==> 1
+ node_22 --> H006 11 1 0.333 2 ==> 1
+
+Tree number 19 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #19 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 24 0 0 0
+ 20 24 1 1 1
+ 19 20 1 1 1
+ 18 19 1 1 3
+ 17 18 2 2 2
+ 16 17 2 0 2
+H010 (2) 16 1 1 1
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H001 (7) 17 0 0 2
+H013 (6) 18 2 0 2
+H014 (5) 19 0 0 0
+H008 (4) 20 1 1 1
+ 23 24 0 0 1
+ 22 23 2 2 2
+H007 (3) 22 1 0 1
+ 21 22 0 0 1
+H012 (10) 21 1 1 1
+H011 (13) 21 0 0 0
+H009 (11) 23 1 0 1
+H006 (12) 24 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /--------------------- H010
+| |
+| | /---------- H003
+| /--------16---------15
+| | | \---------- H005
+| | |
+| /---------17 \--------------------- H000
+| | |
+| /--------18 \------------------------------- H001
+| | |
+| /---------19 \------------------------------------------ H013
+24 | |
++--------20 \---------------------------------------------------- H014
+| |
+| \--------------------------------------------------------------- H008
+|
+| /--------------------- H007
+| |
+| /--------22 /---------- H012
+| | \---------21
++----------------------------------------23 \---------- H011
+| |
+| \------------------------------- H009
+|
+\------------------------------------------------------------------------- H006
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_24 --> node_20 9 1 1.000 1 ==> 2
+ node_20 --> node_19 10 1 1.000 1 ==> 2
+ node_19 --> node_18 8 1 1.000 1 ==> 2
+ node_18 --> node_17 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_17 --> node_16 1 1 0.333 1 --> 2
+ 2 1 0.333 1 --> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_18 --> H013 1 1 0.333 1 --> 2
+ 2 1 0.333 1 --> 2
+ node_20 --> H008 11 1 0.333 2 ==> 1
+ node_23 --> node_22 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_22 --> H007 12 1 0.333 2 --> 1
+ node_21 --> H012 11 1 0.333 2 ==> 1
+ node_23 --> H009 12 1 0.333 2 --> 1
+ node_24 --> H006 11 1 0.333 2 ==> 1
+
+Tree number 20 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #20 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 24 0 0 0
+ 23 24 0 0 1
+ 20 23 1 1 1
+ 19 20 1 1 2
+ 18 19 1 1 3
+ 17 18 2 2 2
+ 16 17 2 0 2
+H010 (2) 16 1 1 1
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H001 (7) 17 0 0 2
+H013 (6) 18 2 0 2
+H014 (5) 19 0 0 0
+H008 (4) 20 1 0 1
+ 22 23 2 2 2
+ 21 22 0 0 1
+H007 (3) 21 1 1 1
+H011 (13) 21 0 0 0
+H012 (10) 22 1 0 1
+H006 (12) 23 1 0 1
+H009 (11) 24 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------ H010
+| |
+| | /--------- H003
+| /-------16-------15
+| | | \--------- H005
+| | |
+| /--------17 \------------------ H000
+| | |
+| /-------18 \--------------------------- H001
+| | |
+| /-------19 \------------------------------------- H013
+24 | |
+| /-------20 \---------------------------------------------- H014
+| | |
+| | \------------------------------------------------------- H008
+| |
+| | /--------- H007
++-------23 /-------21
+| | | \--------- H011
+| +--------------------------------------------22
+| | \------------------ H012
+| |
+| \---------------------------------------------------------------- H006
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_20 9 1 1.000 1 ==> 2
+ node_20 --> node_19 10 1 1.000 1 ==> 2
+ node_19 --> node_18 8 1 1.000 1 ==> 2
+ node_18 --> node_17 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_17 --> node_16 1 1 0.333 1 --> 2
+ 2 1 0.333 1 --> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_18 --> H013 1 1 0.333 1 --> 2
+ 2 1 0.333 1 --> 2
+ node_20 --> H008 11 1 0.333 2 --> 1
+ node_23 --> node_22 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_21 --> H007 12 1 0.333 2 ==> 1
+ node_22 --> H012 11 1 0.333 2 --> 1
+ node_23 --> H006 11 1 0.333 2 --> 1
+ node_24 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 21 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #21 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 23 0 0 0
+ 21 23 0 0 1
+ 20 21 1 1 1
+ 19 20 1 1 2
+ 18 19 1 1 3
+ 17 18 2 2 2
+ 16 17 2 0 2
+H010 (2) 16 1 1 1
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H001 (7) 17 0 0 2
+H013 (6) 18 2 0 2
+H014 (5) 19 0 0 0
+H008 (4) 20 1 0 1
+H006 (12) 21 1 0 1
+ 22 23 2 2 2
+H007 (3) 22 1 1 1
+H012 (10) 22 1 1 1
+H011 (13) 22 0 0 0
+H009 (11) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------ H010
+| |
+| | /--------- H003
+| /-------16-------15
+| | | \--------- H005
+| | |
+| /--------17 \------------------ H000
+| | |
+| /-------18 \--------------------------- H001
+| | |
+| /-------19 \------------------------------------- H013
+23 | |
+| /-------20 \---------------------------------------------- H014
+| | |
++-------21 \------------------------------------------------------- H008
+| |
+| \---------------------------------------------------------------- H006
+|
+| /--------- H007
+| |
++--------------------------------------------------------------22--------- H012
+| |
+| \--------- H011
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_20 9 1 1.000 1 ==> 2
+ node_20 --> node_19 10 1 1.000 1 ==> 2
+ node_19 --> node_18 8 1 1.000 1 ==> 2
+ node_18 --> node_17 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_17 --> node_16 1 1 0.333 1 --> 2
+ 2 1 0.333 1 --> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_18 --> H013 1 1 0.333 1 --> 2
+ 2 1 0.333 1 --> 2
+ node_20 --> H008 11 1 0.333 2 --> 1
+ node_21 --> H006 11 1 0.333 2 --> 1
+ node_23 --> node_22 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_22 --> H007 12 1 0.333 2 ==> 1
+ node_22 --> H012 11 1 0.333 2 ==> 1
+ node_23 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 22 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #22 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 23 0 0 0
+ 21 23 0 0 1
+ 19 21 2 1 2
+ 18 19 1 1 3
+ 17 18 2 2 2
+ 16 17 2 0 2
+H010 (2) 16 1 1 1
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H001 (7) 17 0 0 2
+H013 (6) 18 2 0 2
+H014 (5) 19 0 0 0
+ 20 21 1 1 1
+H008 (4) 20 1 0 1
+H006 (12) 20 0 0 1
+ 22 23 2 2 2
+H007 (3) 22 1 1 1
+H012 (10) 22 1 1 1
+H011 (13) 22 0 0 0
+H009 (11) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /--------------------- H010
+| |
+| | /---------- H003
+| /--------16---------15
+| | | \---------- H005
+| | |
+| /---------17 \--------------------- H000
+| | |
+| /--------18 \------------------------------- H001
+| | |
+| /---------19 \------------------------------------------ H013
+23 | |
+| | \---------------------------------------------------- H014
++--------21
+| | /---------- H008
+| \---------------------------------------------------20
+| \---------- H006
+|
+| /---------- H007
+| |
++-------------------------------------------------------------22---------- H012
+| |
+| \---------- H011
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_19 9 1 0.500 1 --> 2
+ 10 1 1.000 1 ==> 2
+ node_19 --> node_18 8 1 1.000 1 ==> 2
+ node_18 --> node_17 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_17 --> node_16 1 1 0.333 1 --> 2
+ 2 1 0.333 1 --> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_18 --> H013 1 1 0.333 1 --> 2
+ 2 1 0.333 1 --> 2
+ node_21 --> node_20 11 1 0.500 2 ==> 1
+ node_20 --> H008 9 1 0.500 1 --> 2
+ node_23 --> node_22 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_22 --> H007 12 1 0.333 2 ==> 1
+ node_22 --> H012 11 1 0.500 2 ==> 1
+ node_23 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 23 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #23 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 25 0 0 0
+ 24 25 0 0 1
+ 21 24 0 0 1
+ 20 21 1 1 1
+ 19 20 1 1 2
+ 18 19 1 1 3
+ 17 18 2 2 2
+ 16 17 2 0 2
+H010 (2) 16 1 1 1
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H001 (7) 17 0 0 2
+H013 (6) 18 2 0 2
+H014 (5) 19 0 0 0
+H008 (4) 20 1 0 1
+H006 (12) 21 1 0 1
+ 23 24 2 2 2
+ 22 23 0 0 1
+H007 (3) 22 1 1 1
+H011 (13) 22 0 0 0
+H012 (10) 23 1 0 1
+H009 (11) 25 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /---------------- H010
+| |
+| | /-------- H003
+| /------16------15
+| | | \-------- H005
+| | |
+| /------17 \---------------- H000
+| | |
+| /-------18 \------------------------ H001
+| | |
+| /------19 \-------------------------------- H013
+25 | |
+| /------20 \----------------------------------------- H014
+| | |
+| /------21 \------------------------------------------------- H008
+| | |
+| | \--------------------------------------------------------- H006
+| |
++------24 /-------- H007
+| | /------22
+| | | \-------- H011
+| \-----------------------------------------------23
+| \---------------- H012
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_20 9 1 1.000 1 ==> 2
+ node_20 --> node_19 10 1 1.000 1 ==> 2
+ node_19 --> node_18 8 1 1.000 1 ==> 2
+ node_18 --> node_17 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_17 --> node_16 1 1 0.333 1 --> 2
+ 2 1 0.333 1 --> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_18 --> H013 1 1 0.333 1 --> 2
+ 2 1 0.333 1 --> 2
+ node_20 --> H008 11 1 0.333 2 --> 1
+ node_21 --> H006 11 1 0.333 2 --> 1
+ node_24 --> node_23 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_22 --> H007 12 1 0.333 2 ==> 1
+ node_23 --> H012 11 1 0.333 2 --> 1
+ node_25 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 24 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #24 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 22 0 0 0
+ 20 22 0 0 1
+ 19 20 1 1 1
+ 18 19 1 1 2
+ 17 18 3 3 3
+ 16 17 2 2 2
+H010 (2) 16 1 1 1
+H001 (7) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H013 (6) 17 0 0 0
+H014 (5) 18 0 0 0
+H008 (4) 19 1 0 1
+H006 (12) 20 1 0 1
+ 21 22 2 2 2
+H007 (3) 21 1 1 1
+H012 (10) 21 1 1 1
+H011 (13) 21 0 0 0
+H009 (11) 22 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /--------------------- H010
+| |
+| +--------------------- H001
+| |
+| /--------16 /---------- H003
+| | +---------15
+| | | \---------- H005
+| /---------17 |
+| | | \--------------------- H000
+| | |
+| /--------18 \------------------------------- H013
+22 | |
+| /---------19 \------------------------------------------ H014
+| | |
++--------20 \---------------------------------------------------- H008
+| |
+| \--------------------------------------------------------------- H006
+|
+| /---------- H007
+| |
++-------------------------------------------------------------21---------- H012
+| |
+| \---------- H011
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_20 --> node_19 9 1 1.000 1 ==> 2
+ node_19 --> node_18 10 1 1.000 1 ==> 2
+ node_18 --> node_17 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ 8 1 1.000 1 ==> 2
+ node_17 --> node_16 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_19 --> H008 11 1 0.333 2 --> 1
+ node_20 --> H006 11 1 0.333 2 --> 1
+ node_22 --> node_21 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_21 --> H007 12 1 0.333 2 ==> 1
+ node_21 --> H012 11 1 0.333 2 ==> 1
+ node_22 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 25 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #25 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 23 0 0 0
+ 22 23 0 0 1
+ 19 22 2 2 2
+ 17 19 3 2 3
+ 16 17 2 2 2
+H010 (2) 16 1 1 1
+H001 (7) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H013 (6) 17 0 0 0
+ 18 19 0 0 1
+H007 (3) 18 1 1 1
+H012 (10) 18 1 1 1
+H011 (13) 18 0 0 0
+ 21 22 0 0 1
+ 20 21 1 1 1
+H008 (4) 20 1 0 1
+H006 (12) 20 0 0 1
+H014 (5) 21 2 1 2
+H009 (11) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------------ H010
+| |
+| +------------------------ H001
+| |
+| /----------16 /------------ H003
+| | +----------15
+| | | \------------ H005
+| /-----------17 |
+| | | \------------------------ H000
+| | |
+| | \------------------------------------ H013
+23 /----------19
+| | | /------------ H007
+| | | |
+| | \-----------------------------------18------------ H012
+| | |
++----------22 \------------ H011
+| |
+| | /------------ H008
+| | /----------20
+| | | \------------ H006
+| \-----------------------------------21
+| \------------------------ H014
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_19 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_19 --> node_17 8 1 1.000 1 ==> 2
+ 9 1 0.333 1 --> 2
+ 10 1 0.500 1 ==> 2
+ node_17 --> node_16 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_18 --> H007 12 1 0.333 2 ==> 1
+ node_18 --> H012 11 1 0.500 2 ==> 1
+ node_21 --> node_20 11 1 0.500 2 ==> 1
+ node_20 --> H008 9 1 0.333 1 --> 2
+ node_21 --> H014 9 1 0.333 1 --> 2
+ 10 1 0.500 1 ==> 2
+ node_23 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 26 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #26 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 22 0 0 0
+ 20 22 0 0 2
+ 19 20 2 2 2
+ 17 19 3 1 3
+ 16 17 2 2 2
+H010 (2) 16 1 1 1
+H001 (7) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H013 (6) 17 0 0 0
+ 18 19 0 0 2
+H007 (3) 18 1 1 1
+H012 (10) 18 1 1 1
+H011 (13) 18 0 0 0
+H014 (5) 20 2 0 2
+ 21 22 1 1 1
+H008 (4) 21 1 1 1
+H006 (12) 21 0 0 0
+H009 (11) 22 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------------ H010
+| |
+| +------------------------ H001
+| |
+| /----------16 /------------ H003
+| | +----------15
+| | | \------------ H005
+| /-----------17 |
+| | | \------------------------ H000
+| | |
+| | \------------------------------------ H013
+22 /----------19
+| | | /------------ H007
+| | | |
+| | \-----------------------------------18------------ H012
++----------20 |
+| | \------------ H011
+| |
+| \------------------------------------------------------------- H014
+|
+| /------------ H008
++-----------------------------------------------------------21
+| \------------ H006
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_20 --> node_19 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_19 --> node_17 8 1 1.000 1 ==> 2
+ 9 1 0.333 1 --> 2
+ 10 1 0.500 1 --> 2
+ node_17 --> node_16 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_18 --> H007 12 1 0.333 2 ==> 1
+ node_18 --> H012 11 1 0.500 2 ==> 1
+ node_20 --> H014 9 1 0.333 1 --> 2
+ 10 1 0.500 1 --> 2
+ node_22 --> node_21 11 1 0.500 2 ==> 1
+ node_21 --> H008 9 1 0.333 1 ==> 2
+ node_22 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 27 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #27 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 22 0 0 0
+ 20 22 0 0 2
+ 18 20 2 2 2
+ 17 18 3 1 3
+ 16 17 2 2 2
+H010 (2) 16 1 1 1
+H001 (7) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H013 (6) 17 0 0 0
+H014 (5) 18 0 0 2
+ 19 20 2 0 2
+H007 (3) 19 1 1 1
+H012 (10) 19 1 1 1
+H011 (13) 19 0 0 0
+ 21 22 1 1 1
+H008 (4) 21 1 1 1
+H006 (12) 21 0 0 0
+H009 (11) 22 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------------ H010
+| |
+| +------------------------ H001
+| |
+| /----------16 /------------ H003
+| | +----------15
+| | | \------------ H005
+| /-----------17 |
+| | | \------------------------ H000
+| | |
+| /----------18 \------------------------------------ H013
+22 | |
+| | \------------------------------------------------- H014
++----------20
+| | /------------ H007
+| | |
+| \-----------------------------------------------19------------ H012
+| |
+| \------------ H011
+|
+| /------------ H008
++-----------------------------------------------------------21
+| \------------ H006
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_20 --> node_18 9 1 0.500 1 ==> 2
+ 10 1 1.000 1 ==> 2
+ node_18 --> node_17 1 1 0.333 1 --> 2
+ 2 1 0.333 1 --> 2
+ 8 1 1.000 1 ==> 2
+ node_17 --> node_16 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_20 --> node_19 1 1 0.333 1 --> 2
+ 2 1 0.333 1 --> 2
+ node_19 --> H007 12 1 0.333 2 ==> 1
+ node_19 --> H012 11 1 0.500 2 ==> 1
+ node_22 --> node_21 11 1 0.500 2 ==> 1
+ node_21 --> H008 9 1 0.500 1 ==> 2
+ node_22 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 28 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #28 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 22 0 0 0
+ 20 22 0 0 1
+ 19 20 1 1 1
+ 18 19 1 1 2
+ 17 18 3 3 3
+ 16 17 2 2 2
+H010 (2) 16 1 1 1
+H013 (6) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H001 (7) 17 0 0 0
+H014 (5) 18 0 0 0
+H008 (4) 19 1 0 1
+H006 (12) 20 1 0 1
+ 21 22 2 2 2
+H007 (3) 21 1 1 1
+H012 (10) 21 1 1 1
+H011 (13) 21 0 0 0
+H009 (11) 22 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /--------------------- H010
+| |
+| +--------------------- H013
+| |
+| /--------16 /---------- H003
+| | +---------15
+| | | \---------- H005
+| /---------17 |
+| | | \--------------------- H000
+| | |
+| /--------18 \------------------------------- H001
+22 | |
+| /---------19 \------------------------------------------ H014
+| | |
++--------20 \---------------------------------------------------- H008
+| |
+| \--------------------------------------------------------------- H006
+|
+| /---------- H007
+| |
++-------------------------------------------------------------21---------- H012
+| |
+| \---------- H011
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_20 --> node_19 9 1 1.000 1 ==> 2
+ node_19 --> node_18 10 1 1.000 1 ==> 2
+ node_18 --> node_17 6 1 0.500 1 ==> 2
+ 7 1 0.500 1 ==> 2
+ 8 1 1.000 1 ==> 2
+ node_17 --> node_16 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_19 --> H008 11 1 0.333 2 --> 1
+ node_20 --> H006 11 1 0.333 2 --> 1
+ node_22 --> node_21 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_21 --> H007 12 1 0.333 2 ==> 1
+ node_21 --> H012 11 1 0.333 2 ==> 1
+ node_22 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 29 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #29 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 23 0 0 0
+ 22 23 0 0 1
+ 21 22 1 1 1
+ 20 21 0 0 1
+ 19 20 2 2 2
+ 18 19 1 1 1
+ 17 18 3 3 3
+ 16 17 2 2 2
+H010 (2) 16 1 1 1
+H001 (7) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H013 (6) 17 0 0 0
+H007 (3) 18 1 1 1
+H011 (13) 18 0 0 0
+H012 (10) 19 0 0 0
+H006 (12) 20 0 0 0
+H008 (4) 21 1 0 1
+H014 (5) 22 2 1 2
+H009 (11) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /---------------- H010
+| |
+| +---------------- H001
+| |
+| /------16 /-------- H003
+| | +------15
+| | | \-------- H005
+| /------17 |
+| | | \---------------- H000
+| | |
+| | \------------------------ H013
+23 /-------18
+| | +-------------------------------- H007
+| | |
+| /------19 \-------------------------------- H011
+| | |
+| /------20 \----------------------------------------- H012
+| | |
+| /------21 \------------------------------------------------- H006
+| | |
++------22 \--------------------------------------------------------- H008
+| |
+| \----------------------------------------------------------------- H014
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_21 11 1 0.500 2 ==> 1
+ node_20 --> node_19 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_19 --> node_18 11 1 0.500 1 ==> 2
+ node_18 --> node_17 8 1 1.000 1 ==> 2
+ 9 1 0.333 1 ==> 2
+ 10 1 0.500 1 ==> 2
+ node_17 --> node_16 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_18 --> H007 12 1 0.333 2 ==> 1
+ node_21 --> H008 9 1 0.333 1 --> 2
+ node_22 --> H014 9 1 0.333 1 --> 2
+ 10 1 0.500 1 ==> 2
+ node_23 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 30 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #30 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 22 0 0 0
+ 20 22 0 0 1
+ 19 20 2 2 2
+ 18 19 0 0 1
+ 17 18 3 3 3
+ 16 17 2 2 2
+H010 (2) 16 1 1 1
+H001 (7) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H013 (6) 17 0 0 0
+H007 (3) 18 1 1 1
+H011 (13) 18 0 0 0
+H012 (10) 19 1 0 1
+H006 (12) 20 1 0 1
+ 21 22 1 1 1
+H008 (4) 21 1 1 1
+H014 (5) 21 1 1 1
+H009 (11) 22 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /--------------------- H010
+| |
+| +--------------------- H001
+| |
+| /--------16 /---------- H003
+| | +---------15
+| | | \---------- H005
+| /---------17 |
+| | | \--------------------- H000
+| | |
+| | \------------------------------- H013
+22 /--------18
+| | +------------------------------------------ H007
+| | |
+| /---------19 \------------------------------------------ H011
+| | |
++--------20 \---------------------------------------------------- H012
+| |
+| \--------------------------------------------------------------- H006
+|
+| /---------- H008
++-------------------------------------------------------------21
+| \---------- H014
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_20 --> node_19 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_18 --> node_17 8 1 1.000 1 ==> 2
+ 9 1 0.500 1 ==> 2
+ 10 1 0.500 1 ==> 2
+ node_17 --> node_16 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_18 --> H007 12 1 0.333 2 ==> 1
+ node_19 --> H012 11 1 0.333 2 --> 1
+ node_20 --> H006 11 1 0.333 2 --> 1
+ node_22 --> node_21 9 1 0.500 1 ==> 2
+ node_21 --> H008 11 1 0.333 2 ==> 1
+ node_21 --> H014 10 1 0.500 1 ==> 2
+ node_22 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 31 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #31 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 22 0 0 0
+ 21 22 0 0 1
+ 19 21 2 2 2
+ 18 19 0 0 1
+ 17 18 3 3 3
+ 16 17 2 2 2
+H010 (2) 16 1 1 1
+H001 (7) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H013 (6) 17 0 0 0
+H007 (3) 18 1 1 1
+H011 (13) 18 0 0 0
+H012 (10) 19 1 0 1
+ 20 21 1 0 1
+H008 (4) 20 1 1 1
+H006 (12) 20 0 0 0
+H014 (5) 22 2 2 2
+H009 (11) 22 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /--------------------- H010
+| |
+| +--------------------- H001
+| |
+| /--------16 /---------- H003
+| | +---------15
+| | | \---------- H005
+| /---------17 |
+| | | \--------------------- H000
+| | |
+| | \------------------------------- H013
+22 /--------18
+| | +------------------------------------------ H007
+| | |
+| /---------19 \------------------------------------------ H011
+| | |
+| | \---------------------------------------------------- H012
++--------21
+| | /---------- H008
+| \---------------------------------------------------20
+| \---------- H006
+|
++------------------------------------------------------------------------- H014
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_19 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_18 --> node_17 8 1 1.000 1 ==> 2
+ 9 1 0.333 1 ==> 2
+ 10 1 0.500 1 ==> 2
+ node_17 --> node_16 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_18 --> H007 12 1 0.333 2 ==> 1
+ node_19 --> H012 11 1 0.500 2 --> 1
+ node_21 --> node_20 11 1 0.500 2 --> 1
+ node_20 --> H008 9 1 0.333 1 ==> 2
+ node_22 --> H014 9 1 0.333 1 ==> 2
+ 10 1 0.500 1 ==> 2
+ node_22 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 32 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #32 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 23 0 0 0
+ 22 23 0 0 1
+ 20 22 2 2 2
+ 19 20 0 0 1
+ 18 19 2 2 2
+ 17 18 1 1 1
+ 16 17 2 2 2
+H010 (2) 16 1 1 1
+H001 (7) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H013 (6) 17 0 0 0
+H014 (5) 18 2 2 2
+H007 (3) 19 1 1 1
+H011 (13) 19 0 0 0
+H012 (10) 20 1 0 1
+ 21 22 1 0 1
+H008 (4) 21 1 1 1
+H006 (12) 21 0 0 0
+H009 (11) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------ H010
+| |
+| +------------------ H001
+| |
+| /-------16 /--------- H003
+| | +-------15
+| | | \--------- H005
+| /--------17 |
+| | | \------------------ H000
+| | |
+| /-------18 \--------------------------- H013
+23 | |
+| | \------------------------------------- H014
+| /-------19
+| | +---------------------------------------------- H007
+| | |
+| /-------20 \---------------------------------------------- H011
+| | |
+| | \------------------------------------------------------- H012
++-------22
+| | /--------- H008
+| \-----------------------------------------------------21
+| \--------- H006
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_20 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_19 --> node_18 9 1 0.500 1 ==> 2
+ 10 1 1.000 1 ==> 2
+ node_18 --> node_17 8 1 1.000 1 ==> 2
+ node_17 --> node_16 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_18 --> H014 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_19 --> H007 12 1 0.333 2 ==> 1
+ node_20 --> H012 11 1 0.500 2 --> 1
+ node_22 --> node_21 11 1 0.500 2 --> 1
+ node_21 --> H008 9 1 0.500 1 ==> 2
+ node_23 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 33 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #33 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 24 0 0 0
+ 23 24 0 0 1
+ 20 23 0 0 1
+ 19 20 1 1 1
+ 18 19 1 1 2
+ 17 18 3 3 3
+ 16 17 2 2 2
+H010 (2) 16 1 1 1
+H001 (7) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H013 (6) 17 0 0 0
+H014 (5) 18 0 0 0
+H008 (4) 19 1 0 1
+H006 (12) 20 1 0 1
+ 22 23 2 2 2
+ 21 22 0 0 1
+H007 (3) 21 1 1 1
+H011 (13) 21 0 0 0
+H012 (10) 22 1 0 1
+H009 (11) 24 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------ H010
+| |
+| +------------------ H001
+| |
+| /-------16 /--------- H003
+| | +-------15
+| | | \--------- H005
+| /--------17 |
+| | | \------------------ H000
+| | |
+| /-------18 \--------------------------- H013
+24 | |
+| /-------19 \------------------------------------- H014
+| | |
+| /-------20 \---------------------------------------------- H008
+| | |
+| | \------------------------------------------------------- H006
+| |
++-------23 /--------- H007
+| | /-------21
+| | | \--------- H011
+| \--------------------------------------------22
+| \------------------ H012
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_20 --> node_19 9 1 1.000 1 ==> 2
+ node_19 --> node_18 10 1 1.000 1 ==> 2
+ node_18 --> node_17 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ 8 1 1.000 1 ==> 2
+ node_17 --> node_16 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_19 --> H008 11 1 0.333 2 --> 1
+ node_20 --> H006 11 1 0.333 2 --> 1
+ node_23 --> node_22 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_21 --> H007 12 1 0.333 2 ==> 1
+ node_22 --> H012 11 1 0.333 2 --> 1
+ node_24 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 34 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #34 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 24 0 0 0
+ 23 24 0 0 1
+ 20 23 0 0 1
+ 19 20 1 1 1
+ 18 19 1 1 2
+ 17 18 3 3 3
+ 16 17 2 2 2
+H010 (2) 16 1 1 1
+H013 (6) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H001 (7) 17 0 0 0
+H014 (5) 18 0 0 0
+H008 (4) 19 1 0 1
+H006 (12) 20 1 0 1
+ 22 23 2 2 2
+ 21 22 0 0 1
+H007 (3) 21 1 1 1
+H011 (13) 21 0 0 0
+H012 (10) 22 1 0 1
+H009 (11) 24 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------ H010
+| |
+| +------------------ H013
+| |
+| /-------16 /--------- H003
+| | +-------15
+| | | \--------- H005
+| /--------17 |
+| | | \------------------ H000
+| | |
+| /-------18 \--------------------------- H001
+24 | |
+| /-------19 \------------------------------------- H014
+| | |
+| /-------20 \---------------------------------------------- H008
+| | |
+| | \------------------------------------------------------- H006
+| |
++-------23 /--------- H007
+| | /-------21
+| | | \--------- H011
+| \--------------------------------------------22
+| \------------------ H012
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_20 --> node_19 9 1 1.000 1 ==> 2
+ node_19 --> node_18 10 1 1.000 1 ==> 2
+ node_18 --> node_17 6 1 0.500 1 ==> 2
+ 7 1 0.500 1 ==> 2
+ 8 1 1.000 1 ==> 2
+ node_17 --> node_16 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_19 --> H008 11 1 0.333 2 --> 1
+ node_20 --> H006 11 1 0.333 2 --> 1
+ node_23 --> node_22 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_21 --> H007 12 1 0.333 2 ==> 1
+ node_22 --> H012 11 1 0.333 2 --> 1
+ node_24 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 35 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #35 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 22 0 0 0
+ 20 22 0 0 1
+ 19 20 2 2 2
+ 18 19 0 0 1
+ 17 18 3 3 3
+ 16 17 2 2 2
+H010 (2) 16 1 1 1
+H001 (7) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H013 (6) 17 0 0 0
+H012 (10) 18 1 1 1
+H011 (13) 18 0 0 0
+H007 (3) 19 1 0 1
+H009 (11) 20 1 0 1
+ 21 22 1 1 1
+H008 (4) 21 1 1 1
+H014 (5) 21 1 1 1
+H006 (12) 22 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /--------------------- H010
+| |
+| +--------------------- H001
+| |
+| /--------16 /---------- H003
+| | +---------15
+| | | \---------- H005
+| /---------17 |
+| | | \--------------------- H000
+| | |
+| | \------------------------------- H013
+22 /--------18
+| | +------------------------------------------ H012
+| | |
+| /---------19 \------------------------------------------ H011
+| | |
++--------20 \---------------------------------------------------- H007
+| |
+| \--------------------------------------------------------------- H009
+|
+| /---------- H008
++-------------------------------------------------------------21
+| \---------- H014
+|
+\------------------------------------------------------------------------- H006
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_20 --> node_19 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_18 --> node_17 8 1 1.000 1 ==> 2
+ 9 1 0.500 1 ==> 2
+ 10 1 0.500 1 ==> 2
+ node_17 --> node_16 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_18 --> H012 11 1 0.333 2 ==> 1
+ node_19 --> H007 12 1 0.333 2 --> 1
+ node_20 --> H009 12 1 0.333 2 --> 1
+ node_22 --> node_21 9 1 0.500 1 ==> 2
+ node_21 --> H008 11 1 0.333 2 ==> 1
+ node_21 --> H014 10 1 0.500 1 ==> 2
+ node_22 --> H006 11 1 0.333 2 ==> 1
+
+Tree number 36 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #36 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 22 0 0 0
+ 21 22 0 0 1
+ 19 21 2 2 2
+ 17 19 3 2 3
+ 16 17 2 2 2
+H010 (2) 16 1 1 1
+H001 (7) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H013 (6) 17 0 0 0
+ 18 19 0 0 1
+H007 (3) 18 1 1 1
+H012 (10) 18 1 1 1
+H011 (13) 18 0 0 0
+ 20 21 1 1 1
+H008 (4) 20 1 0 1
+H006 (12) 20 0 0 1
+H014 (5) 21 2 1 2
+H009 (11) 22 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------------ H010
+| |
+| +------------------------ H001
+| |
+| /----------16 /------------ H003
+| | +----------15
+| | | \------------ H005
+| /-----------17 |
+| | | \------------------------ H000
+| | |
+| | \------------------------------------ H013
+22 /----------19
+| | | /------------ H007
+| | | |
+| | \-----------------------------------18------------ H012
+| | |
+| | \------------ H011
++----------21
+| | /------------ H008
+| +-----------------------------------------------20
+| | \------------ H006
+| |
+| \------------------------------------------------------------- H014
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_19 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_19 --> node_17 8 1 1.000 1 ==> 2
+ 9 1 0.333 1 --> 2
+ 10 1 0.500 1 ==> 2
+ node_17 --> node_16 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_18 --> H007 12 1 0.333 2 ==> 1
+ node_18 --> H012 11 1 0.500 2 ==> 1
+ node_21 --> node_20 11 1 0.500 2 ==> 1
+ node_20 --> H008 9 1 0.333 1 --> 2
+ node_21 --> H014 9 1 0.333 1 --> 2
+ 10 1 0.500 1 ==> 2
+ node_22 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 37 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #37 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 21 0 0 0
+ 19 21 2 2 2
+ 18 19 2 2 2
+ 17 18 1 1 1
+ 16 17 2 2 2
+H010 (2) 16 1 1 1
+H001 (7) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H013 (6) 17 0 0 0
+H014 (5) 18 2 2 2
+H007 (3) 19 1 1 1
+H012 (10) 19 1 1 1
+H011 (13) 19 0 0 0
+ 20 21 1 1 1
+H008 (4) 20 1 1 1
+H006 (12) 20 0 0 0
+H009 (11) 21 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------------ H010
+| |
+| +------------------------ H001
+| |
+| /----------16 /------------ H003
+| | +----------15
+| | | \------------ H005
+| /-----------17 |
+| | | \------------------------ H000
+| | |
+| /----------18 \------------------------------------ H013
+21 | |
+| | \------------------------------------------------- H014
+| |
++----------19------------------------------------------------------------- H007
+| |
+| +------------------------------------------------------------- H012
+| |
+| \------------------------------------------------------------- H011
+|
+| /------------ H008
++-----------------------------------------------------------20
+| \------------ H006
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_19 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_19 --> node_18 9 1 0.500 1 ==> 2
+ 10 1 1.000 1 ==> 2
+ node_18 --> node_17 8 1 1.000 1 ==> 2
+ node_17 --> node_16 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_18 --> H014 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_19 --> H007 12 1 0.333 2 ==> 1
+ node_19 --> H012 11 1 0.500 2 ==> 1
+ node_21 --> node_20 11 1 0.500 2 ==> 1
+ node_20 --> H008 9 1 0.500 1 ==> 2
+ node_21 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 38 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #38 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 22 0 0 0
+ 21 22 1 1 1
+ 20 21 2 2 2
+ 19 20 1 1 1
+ 18 19 2 2 2
+ 17 18 1 1 1
+ 16 17 2 2 2
+H010 (2) 16 1 1 1
+H001 (7) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H013 (6) 17 0 0 0
+H014 (5) 18 2 2 2
+H007 (3) 19 1 1 1
+H011 (13) 19 0 0 0
+H012 (10) 20 0 0 0
+H008 (4) 21 1 1 1
+H006 (12) 21 0 0 0
+H009 (11) 22 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------ H010
+| |
+| +------------------ H001
+| |
+| /-------16 /--------- H003
+| | +-------15
+| | | \--------- H005
+| /--------17 |
+| | | \------------------ H000
+| | |
+| /-------18 \--------------------------- H013
+22 | |
+| | \------------------------------------- H014
+| /-------19
+| | +---------------------------------------------- H007
+| | |
+| /-------20 \---------------------------------------------- H011
+| | |
+| | \------------------------------------------------------- H012
++-------21
+| +---------------------------------------------------------------- H008
+| |
+| \---------------------------------------------------------------- H006
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_21 11 1 0.500 2 ==> 1
+ node_21 --> node_20 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_20 --> node_19 11 1 0.500 1 ==> 2
+ node_19 --> node_18 9 1 0.500 1 ==> 2
+ 10 1 1.000 1 ==> 2
+ node_18 --> node_17 8 1 1.000 1 ==> 2
+ node_17 --> node_16 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_18 --> H014 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_19 --> H007 12 1 0.333 2 ==> 1
+ node_21 --> H008 9 1 0.500 1 ==> 2
+ node_22 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 39 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #39 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 23 0 0 0
+ 21 23 0 0 1
+ 20 21 2 2 2
+ 19 20 0 0 1
+ 18 19 2 2 2
+ 17 18 1 1 1
+ 16 17 2 2 2
+H010 (2) 16 1 1 1
+H001 (7) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H013 (6) 17 0 0 0
+H014 (5) 18 2 2 2
+H012 (10) 19 1 1 1
+H011 (13) 19 0 0 0
+H007 (3) 20 1 0 1
+H009 (11) 21 1 0 1
+ 22 23 1 1 1
+H008 (4) 22 1 1 1
+H006 (12) 22 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------ H010
+| |
+| +------------------ H001
+| |
+| /-------16 /--------- H003
+| | +-------15
+| | | \--------- H005
+| /--------17 |
+| | | \------------------ H000
+| | |
+| /-------18 \--------------------------- H013
+23 | |
+| | \------------------------------------- H014
+| /-------19
+| | +---------------------------------------------- H012
+| | |
+| /-------20 \---------------------------------------------- H011
+| | |
++-------21 \------------------------------------------------------- H007
+| |
+| \---------------------------------------------------------------- H009
+|
+| /--------- H008
+\--------------------------------------------------------------22
+ \--------- H006
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_20 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_19 --> node_18 9 1 0.500 1 ==> 2
+ 10 1 1.000 1 ==> 2
+ node_18 --> node_17 8 1 1.000 1 ==> 2
+ node_17 --> node_16 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_18 --> H014 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_19 --> H012 11 1 0.500 2 ==> 1
+ node_20 --> H007 12 1 0.333 2 --> 1
+ node_21 --> H009 12 1 0.333 2 --> 1
+ node_23 --> node_22 11 1 0.500 2 ==> 1
+ node_22 --> H008 9 1 0.500 1 ==> 2
+
+Tree number 40 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #40 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 23 0 0 0
+ 22 23 0 0 1
+ 19 22 1 1 1
+ 18 19 1 1 2
+ 17 18 3 3 3
+ 16 17 2 2 2
+H010 (2) 16 1 1 1
+H001 (7) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H013 (6) 17 0 0 0
+H014 (5) 18 0 0 0
+H008 (4) 19 1 0 1
+ 21 22 2 2 2
+ 20 21 0 0 1
+H007 (3) 20 1 1 1
+H011 (13) 20 0 0 0
+H012 (10) 21 1 0 1
+H006 (12) 22 1 0 1
+H009 (11) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /--------------------- H010
+| |
+| +--------------------- H001
+| |
+| /--------16 /---------- H003
+| | +---------15
+| | | \---------- H005
+| /---------17 |
+| | | \--------------------- H000
+| | |
+| /--------18 \------------------------------- H013
+23 | |
+| /---------19 \------------------------------------------ H014
+| | |
+| | \---------------------------------------------------- H008
+| |
+| | /---------- H007
++--------22 /---------20
+| | | \---------- H011
+| +----------------------------------------21
+| | \--------------------- H012
+| |
+| \--------------------------------------------------------------- H006
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_19 9 1 1.000 1 ==> 2
+ node_19 --> node_18 10 1 1.000 1 ==> 2
+ node_18 --> node_17 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ 8 1 1.000 1 ==> 2
+ node_17 --> node_16 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_19 --> H008 11 1 0.333 2 --> 1
+ node_22 --> node_21 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_20 --> H007 12 1 0.333 2 ==> 1
+ node_21 --> H012 11 1 0.333 2 --> 1
+ node_22 --> H006 11 1 0.333 2 --> 1
+ node_23 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 41 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #41 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 24 0 0 0
+ 20 24 0 0 1
+ 19 20 1 1 1
+ 18 19 1 1 2
+ 17 18 3 3 3
+ 16 17 2 2 2
+H010 (2) 16 1 1 1
+H001 (7) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H013 (6) 17 0 0 0
+H014 (5) 18 0 0 0
+H008 (4) 19 1 0 1
+H006 (12) 20 1 0 1
+ 23 24 0 0 1
+ 22 23 2 2 2
+H007 (3) 22 1 0 1
+ 21 22 0 0 1
+H012 (10) 21 1 1 1
+H011 (13) 21 0 0 0
+H009 (11) 23 1 0 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /--------------------- H010
+| |
+| +--------------------- H001
+| |
+| /--------16 /---------- H003
+| | +---------15
+| | | \---------- H005
+| /---------17 |
+| | | \--------------------- H000
+| | |
+24 /--------18 \------------------------------- H013
+| | |
+| /---------19 \------------------------------------------ H014
+| | |
++--------20 \---------------------------------------------------- H008
+| |
+| \--------------------------------------------------------------- H006
+|
+| /--------------------- H007
+| |
+| /--------22 /---------- H012
+| | \---------21
+\----------------------------------------23 \---------- H011
+ |
+ \------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_20 --> node_19 9 1 1.000 1 ==> 2
+ node_19 --> node_18 10 1 1.000 1 ==> 2
+ node_18 --> node_17 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ 8 1 1.000 1 ==> 2
+ node_17 --> node_16 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_19 --> H008 11 1 0.333 2 --> 1
+ node_20 --> H006 11 1 0.333 2 --> 1
+ node_23 --> node_22 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_22 --> H007 12 1 0.333 2 --> 1
+ node_21 --> H012 11 1 0.333 2 ==> 1
+ node_23 --> H009 12 1 0.333 2 --> 1
+
+Tree number 42 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #42 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 24 0 0 0
+ 23 24 0 0 1
+ 19 23 1 1 1
+ 18 19 1 1 2
+ 17 18 3 3 3
+ 16 17 2 2 2
+H010 (2) 16 1 1 1
+H001 (7) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H013 (6) 17 0 0 0
+H014 (5) 18 0 0 0
+H008 (4) 19 1 0 1
+ 22 23 0 0 1
+ 21 22 2 2 2
+ 20 21 0 0 1
+H007 (3) 20 1 1 1
+H011 (13) 20 0 0 0
+H012 (10) 21 1 0 1
+H006 (12) 22 1 0 1
+H009 (11) 24 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /--------------------- H010
+| |
+| +--------------------- H001
+| |
+| /--------16 /---------- H003
+| | +---------15
+| | | \---------- H005
+| /---------17 |
+| | | \--------------------- H000
+| | |
+| /--------18 \------------------------------- H013
+24 | |
+| /---------19 \------------------------------------------ H014
+| | |
+| | \---------------------------------------------------- H008
+| |
+| | /---------- H007
++--------23 /---------20
+| | | \---------- H011
+| | /--------21
+| | | \--------------------- H012
+| \------------------------------22
+| \------------------------------- H006
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_19 9 1 1.000 1 ==> 2
+ node_19 --> node_18 10 1 1.000 1 ==> 2
+ node_18 --> node_17 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ 8 1 1.000 1 ==> 2
+ node_17 --> node_16 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_19 --> H008 11 1 0.333 2 --> 1
+ node_22 --> node_21 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_20 --> H007 12 1 0.333 2 ==> 1
+ node_21 --> H012 11 1 0.333 2 --> 1
+ node_22 --> H006 11 1 0.333 2 --> 1
+ node_24 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 43 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #43 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 23 0 0 0
+ 22 23 0 0 1
+ 20 22 0 0 2
+ 19 20 2 2 2
+ 17 19 3 1 3
+ 16 17 2 2 2
+H010 (2) 16 1 1 1
+H001 (7) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H013 (6) 17 0 0 0
+ 18 19 0 0 2
+H007 (3) 18 1 1 1
+H012 (10) 18 1 1 1
+H011 (13) 18 0 0 0
+H014 (5) 20 2 0 2
+ 21 22 1 1 1
+H008 (4) 21 1 0 1
+H006 (12) 21 0 0 1
+H009 (11) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /--------------------- H010
+| |
+| +--------------------- H001
+| |
+| /--------16 /---------- H003
+| | +---------15
+| | | \---------- H005
+| /---------17 |
+| | | \--------------------- H000
+| | |
+| | \------------------------------- H013
+23 /--------19
+| | | /---------- H007
+| | | |
+| | \------------------------------18---------- H012
+| /---------20 |
+| | | \---------- H011
+| | |
++--------22 \---------------------------------------------------- H014
+| |
+| | /---------- H008
+| \---------------------------------------------------21
+| \---------- H006
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_20 --> node_19 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_19 --> node_17 8 1 1.000 1 ==> 2
+ 9 1 0.333 1 --> 2
+ 10 1 0.500 1 --> 2
+ node_17 --> node_16 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_18 --> H007 12 1 0.333 2 ==> 1
+ node_18 --> H012 11 1 0.500 2 ==> 1
+ node_20 --> H014 9 1 0.333 1 --> 2
+ 10 1 0.500 1 --> 2
+ node_22 --> node_21 11 1 0.500 2 ==> 1
+ node_21 --> H008 9 1 0.333 1 --> 2
+ node_23 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 44 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #44 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 22 0 0 0
+ 20 22 0 0 1
+ 19 20 2 2 2
+ 18 19 0 0 1
+ 17 18 3 3 3
+ 16 17 2 2 2
+H010 (2) 16 1 1 1
+H001 (7) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H013 (6) 17 0 0 0
+H012 (10) 18 1 1 1
+H011 (13) 18 0 0 0
+H007 (3) 19 1 0 1
+H009 (11) 20 1 0 1
+ 21 22 1 1 1
+H008 (4) 21 1 1 1
+H006 (12) 21 0 0 0
+H014 (5) 22 2 2 2
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /--------------------- H010
+| |
+| +--------------------- H001
+| |
+| /--------16 /---------- H003
+| | +---------15
+| | | \---------- H005
+| /---------17 |
+| | | \--------------------- H000
+| | |
+| | \------------------------------- H013
+22 /--------18
+| | +------------------------------------------ H012
+| | |
+| /---------19 \------------------------------------------ H011
+| | |
++--------20 \---------------------------------------------------- H007
+| |
+| \--------------------------------------------------------------- H009
+|
+| /---------- H008
++-------------------------------------------------------------21
+| \---------- H006
+|
+\------------------------------------------------------------------------- H014
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_20 --> node_19 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_18 --> node_17 8 1 1.000 1 ==> 2
+ 9 1 0.333 1 ==> 2
+ 10 1 0.500 1 ==> 2
+ node_17 --> node_16 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_18 --> H012 11 1 0.500 2 ==> 1
+ node_19 --> H007 12 1 0.333 2 --> 1
+ node_20 --> H009 12 1 0.333 2 --> 1
+ node_22 --> node_21 11 1 0.500 2 ==> 1
+ node_21 --> H008 9 1 0.333 1 ==> 2
+ node_22 --> H014 9 1 0.333 1 ==> 2
+ 10 1 0.500 1 ==> 2
+
+Tree number 45 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #45 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 23 0 0 0
+ 20 23 0 0 1
+ 19 20 2 2 2
+ 18 19 0 0 1
+ 17 18 3 3 3
+ 16 17 2 2 2
+H010 (2) 16 1 1 1
+H001 (7) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H013 (6) 17 0 0 0
+H012 (10) 18 1 1 1
+H011 (13) 18 0 0 0
+H007 (3) 19 1 0 1
+H009 (11) 20 1 0 1
+ 22 23 0 0 1
+ 21 22 1 1 1
+H008 (4) 21 1 0 1
+H006 (12) 21 0 0 1
+H014 (5) 22 2 1 2
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /--------------------- H010
+| |
+| +--------------------- H001
+| |
+| /--------16 /---------- H003
+| | +---------15
+| | | \---------- H005
+| /---------17 |
+| | | \--------------------- H000
+| | |
+| | \------------------------------- H013
+23 /--------18
+| | +------------------------------------------ H012
+| | |
+| /---------19 \------------------------------------------ H011
+| | |
++--------20 \---------------------------------------------------- H007
+| |
+| \--------------------------------------------------------------- H009
+|
+| /---------- H008
+| /---------21
+| | \---------- H006
+\--------------------------------------------------22
+ \--------------------- H014
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_20 --> node_19 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_18 --> node_17 8 1 1.000 1 ==> 2
+ 9 1 0.333 1 ==> 2
+ 10 1 0.500 1 ==> 2
+ node_17 --> node_16 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_18 --> H012 11 1 0.500 2 ==> 1
+ node_19 --> H007 12 1 0.333 2 --> 1
+ node_20 --> H009 12 1 0.333 2 --> 1
+ node_22 --> node_21 11 1 0.500 2 ==> 1
+ node_21 --> H008 9 1 0.333 1 --> 2
+ node_22 --> H014 9 1 0.333 1 --> 2
+ 10 1 0.500 1 ==> 2
+
+Tree number 46 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #46 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 24 0 0 0
+ 20 24 0 0 1
+ 19 20 1 1 1
+ 18 19 1 1 2
+ 17 18 3 3 3
+ 16 17 2 2 2
+H010 (2) 16 1 1 1
+H013 (6) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H001 (7) 17 0 0 0
+H014 (5) 18 0 0 0
+H008 (4) 19 1 0 1
+H006 (12) 20 1 0 1
+ 23 24 0 0 1
+ 22 23 2 2 2
+H007 (3) 22 1 0 1
+ 21 22 0 0 1
+H012 (10) 21 1 1 1
+H011 (13) 21 0 0 0
+H009 (11) 23 1 0 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /--------------------- H010
+| |
+| +--------------------- H013
+| |
+| /--------16 /---------- H003
+| | +---------15
+| | | \---------- H005
+| /---------17 |
+| | | \--------------------- H000
+| | |
+24 /--------18 \------------------------------- H001
+| | |
+| /---------19 \------------------------------------------ H014
+| | |
++--------20 \---------------------------------------------------- H008
+| |
+| \--------------------------------------------------------------- H006
+|
+| /--------------------- H007
+| |
+| /--------22 /---------- H012
+| | \---------21
+\----------------------------------------23 \---------- H011
+ |
+ \------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_20 --> node_19 9 1 1.000 1 ==> 2
+ node_19 --> node_18 10 1 1.000 1 ==> 2
+ node_18 --> node_17 6 1 0.500 1 ==> 2
+ 7 1 0.500 1 ==> 2
+ 8 1 1.000 1 ==> 2
+ node_17 --> node_16 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_19 --> H008 11 1 0.333 2 --> 1
+ node_20 --> H006 11 1 0.333 2 --> 1
+ node_23 --> node_22 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_22 --> H007 12 1 0.333 2 --> 1
+ node_21 --> H012 11 1 0.333 2 ==> 1
+ node_23 --> H009 12 1 0.333 2 --> 1
+
+Tree number 47 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #47 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 21 0 0 0
+ 20 21 1 1 1
+ 19 20 2 2 2
+ 18 19 1 1 1
+ 17 18 3 3 3
+ 16 17 2 2 2
+H010 (2) 16 1 1 1
+H001 (7) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H013 (6) 17 0 0 0
+H007 (3) 18 1 1 1
+H011 (13) 18 0 0 0
+H012 (10) 19 0 0 0
+H008 (4) 20 1 1 1
+H006 (12) 20 0 0 0
+H014 (5) 21 2 2 2
+H009 (11) 21 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /--------------------- H010
+| |
+| +--------------------- H001
+| |
+| /--------16 /---------- H003
+| | +---------15
+| | | \---------- H005
+| /---------17 |
+| | | \--------------------- H000
+| | |
+| | \------------------------------- H013
+21 /--------18
+| | +------------------------------------------ H007
+| | |
+| /---------19 \------------------------------------------ H011
+| | |
+| | \---------------------------------------------------- H012
++--------20
+| +--------------------------------------------------------------- H008
+| |
+| \--------------------------------------------------------------- H006
+|
++------------------------------------------------------------------------- H014
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_20 11 1 0.500 2 ==> 1
+ node_20 --> node_19 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_19 --> node_18 11 1 0.500 1 ==> 2
+ node_18 --> node_17 8 1 1.000 1 ==> 2
+ 9 1 0.333 1 ==> 2
+ 10 1 0.500 1 ==> 2
+ node_17 --> node_16 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_18 --> H007 12 1 0.333 2 ==> 1
+ node_20 --> H008 9 1 0.333 1 ==> 2
+ node_21 --> H014 9 1 0.333 1 ==> 2
+ 10 1 0.500 1 ==> 2
+ node_21 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 48 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #48 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 22 0 0 0
+ 20 22 0 0 1
+ 18 20 2 1 2
+ 17 18 3 3 3
+ 16 17 2 2 2
+H010 (2) 16 1 1 1
+H001 (7) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H013 (6) 17 0 0 0
+H014 (5) 18 0 0 0
+ 19 20 1 1 1
+H008 (4) 19 1 0 1
+H006 (12) 19 0 0 1
+ 21 22 2 2 2
+H007 (3) 21 1 1 1
+H012 (10) 21 1 1 1
+H011 (13) 21 0 0 0
+H009 (11) 22 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------------ H010
+| |
+| +------------------------ H001
+| |
+| /----------16 /------------ H003
+| | +----------15
+| | | \------------ H005
+| /-----------17 |
+| | | \------------------------ H000
+| | |
+| /----------18 \------------------------------------ H013
+22 | |
+| | \------------------------------------------------- H014
++----------20
+| | /------------ H008
+| \-----------------------------------------------19
+| \------------ H006
+|
+| /------------ H007
+| |
++-----------------------------------------------------------21------------ H012
+| |
+| \------------ H011
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_20 --> node_18 9 1 0.500 1 --> 2
+ 10 1 1.000 1 ==> 2
+ node_18 --> node_17 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ 8 1 1.000 1 ==> 2
+ node_17 --> node_16 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_20 --> node_19 11 1 0.500 2 ==> 1
+ node_19 --> H008 9 1 0.500 1 --> 2
+ node_22 --> node_21 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_21 --> H007 12 1 0.333 2 ==> 1
+ node_21 --> H012 11 1 0.500 2 ==> 1
+ node_22 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 49 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #49 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 22 0 0 0
+ 20 22 0 0 1
+ 18 20 2 1 2
+ 17 18 3 3 3
+ 16 17 2 2 2
+H010 (2) 16 1 1 1
+H013 (6) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H001 (7) 17 0 0 0
+H014 (5) 18 0 0 0
+ 19 20 1 1 1
+H008 (4) 19 1 0 1
+H006 (12) 19 0 0 1
+ 21 22 2 2 2
+H007 (3) 21 1 1 1
+H012 (10) 21 1 1 1
+H011 (13) 21 0 0 0
+H009 (11) 22 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------------ H010
+| |
+| +------------------------ H013
+| |
+| /----------16 /------------ H003
+| | +----------15
+| | | \------------ H005
+| /-----------17 |
+| | | \------------------------ H000
+| | |
+| /----------18 \------------------------------------ H001
+22 | |
+| | \------------------------------------------------- H014
++----------20
+| | /------------ H008
+| \-----------------------------------------------19
+| \------------ H006
+|
+| /------------ H007
+| |
++-----------------------------------------------------------21------------ H012
+| |
+| \------------ H011
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_20 --> node_18 9 1 0.500 1 --> 2
+ 10 1 1.000 1 ==> 2
+ node_18 --> node_17 6 1 0.500 1 ==> 2
+ 7 1 0.500 1 ==> 2
+ 8 1 1.000 1 ==> 2
+ node_17 --> node_16 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_20 --> node_19 11 1 0.500 2 ==> 1
+ node_19 --> H008 9 1 0.500 1 --> 2
+ node_22 --> node_21 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_21 --> H007 12 1 0.333 2 ==> 1
+ node_21 --> H012 11 1 0.500 2 ==> 1
+ node_22 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 50 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #50 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 24 0 0 0
+ 23 24 0 0 1
+ 19 23 1 1 1
+ 18 19 1 1 2
+ 17 18 3 3 3
+ 16 17 2 2 2
+H010 (2) 16 1 1 1
+H013 (6) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H001 (7) 17 0 0 0
+H014 (5) 18 0 0 0
+H008 (4) 19 1 0 1
+ 22 23 0 0 1
+ 21 22 2 2 2
+ 20 21 0 0 1
+H007 (3) 20 1 1 1
+H011 (13) 20 0 0 0
+H012 (10) 21 1 0 1
+H006 (12) 22 1 0 1
+H009 (11) 24 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /--------------------- H010
+| |
+| +--------------------- H013
+| |
+| /--------16 /---------- H003
+| | +---------15
+| | | \---------- H005
+| /---------17 |
+| | | \--------------------- H000
+| | |
+| /--------18 \------------------------------- H001
+24 | |
+| /---------19 \------------------------------------------ H014
+| | |
+| | \---------------------------------------------------- H008
+| |
+| | /---------- H007
++--------23 /---------20
+| | | \---------- H011
+| | /--------21
+| | | \--------------------- H012
+| \------------------------------22
+| \------------------------------- H006
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_19 9 1 1.000 1 ==> 2
+ node_19 --> node_18 10 1 1.000 1 ==> 2
+ node_18 --> node_17 6 1 0.500 1 ==> 2
+ 7 1 0.500 1 ==> 2
+ 8 1 1.000 1 ==> 2
+ node_17 --> node_16 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_19 --> H008 11 1 0.333 2 --> 1
+ node_22 --> node_21 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_20 --> H007 12 1 0.333 2 ==> 1
+ node_21 --> H012 11 1 0.333 2 --> 1
+ node_22 --> H006 11 1 0.333 2 --> 1
+ node_24 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 51 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #51 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 23 0 0 0
+ 21 23 0 0 2
+ 19 21 2 2 2
+ 18 19 1 1 3
+ 17 18 2 2 2
+ 16 17 2 0 2
+H010 (2) 16 1 1 1
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H001 (7) 17 0 0 2
+H013 (6) 18 2 0 2
+H014 (5) 19 0 0 2
+ 20 21 2 0 2
+H007 (3) 20 1 1 1
+H012 (10) 20 1 1 1
+H011 (13) 20 0 0 0
+ 22 23 1 1 1
+H008 (4) 22 1 1 1
+H006 (12) 22 0 0 0
+H009 (11) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /--------------------- H010
+| |
+| | /---------- H003
+| /--------16---------15
+| | | \---------- H005
+| | |
+| /---------17 \--------------------- H000
+| | |
+| /--------18 \------------------------------- H001
+| | |
+| /---------19 \------------------------------------------ H013
+23 | |
+| | \---------------------------------------------------- H014
++--------21
+| | /---------- H007
+| | |
+| \---------------------------------------------------20---------- H012
+| |
+| \---------- H011
+|
+| /---------- H008
++-------------------------------------------------------------22
+| \---------- H006
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_19 9 1 0.500 1 ==> 2
+ 10 1 1.000 1 ==> 2
+ node_19 --> node_18 8 1 1.000 1 ==> 2
+ node_18 --> node_17 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_17 --> node_16 1 1 0.333 1 --> 2
+ 2 1 0.333 1 --> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_18 --> H013 1 1 0.333 1 --> 2
+ 2 1 0.333 1 --> 2
+ node_21 --> node_20 1 1 0.333 1 --> 2
+ 2 1 0.333 1 --> 2
+ node_20 --> H007 12 1 0.333 2 ==> 1
+ node_20 --> H012 11 1 0.500 2 ==> 1
+ node_23 --> node_22 11 1 0.500 2 ==> 1
+ node_22 --> H008 9 1 0.500 1 ==> 2
+ node_23 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 52 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #52 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 22 0 0 0
+ 19 22 2 2 2
+ 18 19 1 1 3
+ 17 18 2 2 2
+ 16 17 2 0 2
+H010 (2) 16 1 1 1
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H013 (6) 17 0 0 2
+H001 (7) 18 2 0 2
+H014 (5) 19 0 0 0
+ 20 22 2 2 2
+H007 (3) 20 1 1 1
+H012 (10) 20 1 1 1
+H011 (13) 20 0 0 0
+ 21 22 1 1 1
+H008 (4) 21 1 1 1
+H006 (12) 21 0 0 0
+H009 (11) 22 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------------ H010
+| |
+| | /------------ H003
+| /----------16----------15
+| | | \------------ H005
+| | |
+| /-----------17 \------------------------ H000
+| | |
+| /----------18 \------------------------------------ H013
+| | |
++----------19 \------------------------------------------------- H001
+22 |
+| \------------------------------------------------------------- H014
+|
+| /------------ H007
+| |
++-----------------------------------------------------------20------------ H012
+| |
+| \------------ H011
+|
+| /------------ H008
++-----------------------------------------------------------21
+| \------------ H006
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_19 9 1 0.500 1 ==> 2
+ 10 1 1.000 1 ==> 2
+ node_19 --> node_18 8 1 1.000 1 ==> 2
+ node_18 --> node_17 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_17 --> node_16 6 1 0.500 1 --> 2
+ 7 1 0.500 1 --> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_18 --> H001 6 1 0.500 1 --> 2
+ 7 1 0.500 1 --> 2
+ node_22 --> node_20 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_20 --> H007 12 1 0.333 2 ==> 1
+ node_20 --> H012 11 1 0.500 2 ==> 1
+ node_22 --> node_21 11 1 0.500 2 ==> 1
+ node_21 --> H008 9 1 0.500 1 ==> 2
+ node_22 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 53 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #53 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 23 0 0 0
+ 21 23 0 0 1
+ 20 21 1 1 1
+ 19 20 1 1 2
+ 18 19 1 1 3
+ 17 18 2 2 2
+ 16 17 2 0 2
+H010 (2) 16 1 1 1
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H013 (6) 17 0 0 2
+H001 (7) 18 2 0 2
+H014 (5) 19 0 0 0
+H008 (4) 20 1 0 1
+H006 (12) 21 1 0 1
+ 22 23 2 2 2
+H007 (3) 22 1 1 1
+H012 (10) 22 1 1 1
+H011 (13) 22 0 0 0
+H009 (11) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------ H010
+| |
+| | /--------- H003
+| /-------16-------15
+| | | \--------- H005
+| | |
+| /--------17 \------------------ H000
+| | |
+| /-------18 \--------------------------- H013
+| | |
+| /-------19 \------------------------------------- H001
+23 | |
+| /-------20 \---------------------------------------------- H014
+| | |
++-------21 \------------------------------------------------------- H008
+| |
+| \---------------------------------------------------------------- H006
+|
+| /--------- H007
+| |
++--------------------------------------------------------------22--------- H012
+| |
+| \--------- H011
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_20 9 1 1.000 1 ==> 2
+ node_20 --> node_19 10 1 1.000 1 ==> 2
+ node_19 --> node_18 8 1 1.000 1 ==> 2
+ node_18 --> node_17 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_17 --> node_16 6 1 0.500 1 --> 2
+ 7 1 0.500 1 --> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_18 --> H001 6 1 0.500 1 --> 2
+ 7 1 0.500 1 --> 2
+ node_20 --> H008 11 1 0.333 2 --> 1
+ node_21 --> H006 11 1 0.333 2 --> 1
+ node_23 --> node_22 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_22 --> H007 12 1 0.333 2 ==> 1
+ node_22 --> H012 11 1 0.333 2 ==> 1
+ node_23 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 54 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #54 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 25 0 0 0
+ 21 25 0 0 1
+ 20 21 1 1 1
+ 19 20 1 1 2
+ 18 19 1 1 3
+ 17 18 2 2 2
+ 16 17 2 0 2
+H010 (2) 16 1 1 1
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H013 (6) 17 0 0 2
+H001 (7) 18 2 0 2
+H014 (5) 19 0 0 0
+H008 (4) 20 1 0 1
+H006 (12) 21 1 0 1
+ 24 25 0 0 1
+ 23 24 2 2 2
+H007 (3) 23 1 0 1
+ 22 23 0 0 1
+H012 (10) 22 1 1 1
+H011 (13) 22 0 0 0
+H009 (11) 24 1 0 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------ H010
+| |
+| | /--------- H003
+| /-------16-------15
+| | | \--------- H005
+| | |
+| /--------17 \------------------ H000
+| | |
+| /-------18 \--------------------------- H013
+| | |
+25 /-------19 \------------------------------------- H001
+| | |
+| /-------20 \---------------------------------------------- H014
+| | |
++-------21 \------------------------------------------------------- H008
+| |
+| \---------------------------------------------------------------- H006
+|
+| /------------------ H007
+| |
+| /-------23 /--------- H012
+| | \-------22
+\--------------------------------------------24 \--------- H011
+ |
+ \--------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_20 9 1 1.000 1 ==> 2
+ node_20 --> node_19 10 1 1.000 1 ==> 2
+ node_19 --> node_18 8 1 1.000 1 ==> 2
+ node_18 --> node_17 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_17 --> node_16 6 1 0.500 1 --> 2
+ 7 1 0.500 1 --> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_18 --> H001 6 1 0.500 1 --> 2
+ 7 1 0.500 1 --> 2
+ node_20 --> H008 11 1 0.333 2 --> 1
+ node_21 --> H006 11 1 0.333 2 --> 1
+ node_24 --> node_23 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_23 --> H007 12 1 0.333 2 --> 1
+ node_22 --> H012 11 1 0.333 2 ==> 1
+ node_24 --> H009 12 1 0.333 2 --> 1
+
+Tree number 55 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #55 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 23 0 0 0
+ 21 23 0 0 1
+ 19 21 2 1 2
+ 18 19 1 1 3
+ 17 18 2 2 2
+ 16 17 2 0 2
+H010 (2) 16 1 1 1
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H013 (6) 17 0 0 2
+H001 (7) 18 2 0 2
+H014 (5) 19 0 0 0
+ 20 21 1 1 1
+H008 (4) 20 1 0 1
+H006 (12) 20 0 0 1
+ 22 23 2 2 2
+H007 (3) 22 1 1 1
+H012 (10) 22 1 1 1
+H011 (13) 22 0 0 0
+H009 (11) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /--------------------- H010
+| |
+| | /---------- H003
+| /--------16---------15
+| | | \---------- H005
+| | |
+| /---------17 \--------------------- H000
+| | |
+| /--------18 \------------------------------- H013
+| | |
+| /---------19 \------------------------------------------ H001
+23 | |
+| | \---------------------------------------------------- H014
++--------21
+| | /---------- H008
+| \---------------------------------------------------20
+| \---------- H006
+|
+| /---------- H007
+| |
++-------------------------------------------------------------22---------- H012
+| |
+| \---------- H011
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_19 9 1 0.500 1 --> 2
+ 10 1 1.000 1 ==> 2
+ node_19 --> node_18 8 1 1.000 1 ==> 2
+ node_18 --> node_17 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_17 --> node_16 6 1 0.500 1 --> 2
+ 7 1 0.500 1 --> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_18 --> H001 6 1 0.500 1 --> 2
+ 7 1 0.500 1 --> 2
+ node_21 --> node_20 11 1 0.500 2 ==> 1
+ node_20 --> H008 9 1 0.500 1 --> 2
+ node_23 --> node_22 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_22 --> H007 12 1 0.333 2 ==> 1
+ node_22 --> H012 11 1 0.500 2 ==> 1
+ node_23 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 56 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #56 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 24 0 0 0
+ 20 24 1 1 1
+ 19 20 1 1 1
+ 18 19 1 1 3
+ 17 18 2 2 2
+ 16 17 2 0 2
+H010 (2) 16 1 1 1
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H013 (6) 17 0 0 2
+H001 (7) 18 2 0 2
+H014 (5) 19 0 0 0
+H008 (4) 20 1 1 1
+ 23 24 0 0 1
+ 22 23 2 2 2
+H007 (3) 22 1 0 1
+ 21 22 0 0 1
+H012 (10) 21 1 1 1
+H011 (13) 21 0 0 0
+H009 (11) 23 1 0 1
+H006 (12) 24 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /--------------------- H010
+| |
+| | /---------- H003
+| /--------16---------15
+| | | \---------- H005
+| | |
+| /---------17 \--------------------- H000
+| | |
+| /--------18 \------------------------------- H013
+| | |
+| /---------19 \------------------------------------------ H001
+24 | |
++--------20 \---------------------------------------------------- H014
+| |
+| \--------------------------------------------------------------- H008
+|
+| /--------------------- H007
+| |
+| /--------22 /---------- H012
+| | \---------21
++----------------------------------------23 \---------- H011
+| |
+| \------------------------------- H009
+|
+\------------------------------------------------------------------------- H006
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_24 --> node_20 9 1 1.000 1 ==> 2
+ node_20 --> node_19 10 1 1.000 1 ==> 2
+ node_19 --> node_18 8 1 1.000 1 ==> 2
+ node_18 --> node_17 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_17 --> node_16 6 1 0.500 1 --> 2
+ 7 1 0.500 1 --> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_18 --> H001 6 1 0.500 1 --> 2
+ 7 1 0.500 1 --> 2
+ node_20 --> H008 11 1 0.333 2 ==> 1
+ node_23 --> node_22 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_22 --> H007 12 1 0.333 2 --> 1
+ node_21 --> H012 11 1 0.333 2 ==> 1
+ node_23 --> H009 12 1 0.333 2 --> 1
+ node_24 --> H006 11 1 0.333 2 ==> 1
+
+Tree number 57 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #57 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 24 0 0 0
+ 20 24 1 1 1
+ 19 20 1 1 1
+ 18 19 1 1 3
+ 17 18 2 2 2
+ 16 17 2 0 2
+H010 (2) 16 1 1 1
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H013 (6) 17 0 0 2
+H001 (7) 18 2 0 2
+H014 (5) 19 0 0 0
+H008 (4) 20 1 1 1
+ 23 24 0 0 1
+ 22 23 2 2 2
+ 21 22 0 0 1
+H007 (3) 21 1 1 1
+H011 (13) 21 0 0 0
+H012 (10) 22 1 0 1
+H006 (12) 23 1 0 1
+H009 (11) 24 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /--------------------- H010
+| |
+| | /---------- H003
+| /--------16---------15
+| | | \---------- H005
+| | |
+| /---------17 \--------------------- H000
+| | |
+| /--------18 \------------------------------- H013
+| | |
+| /---------19 \------------------------------------------ H001
+24 | |
++--------20 \---------------------------------------------------- H014
+| |
+| \--------------------------------------------------------------- H008
+|
+| /---------- H007
+| /---------21
+| | \---------- H011
+| /--------22
+| | \--------------------- H012
++----------------------------------------23
+| \------------------------------- H006
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_24 --> node_20 9 1 1.000 1 ==> 2
+ node_20 --> node_19 10 1 1.000 1 ==> 2
+ node_19 --> node_18 8 1 1.000 1 ==> 2
+ node_18 --> node_17 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_17 --> node_16 6 1 0.500 1 --> 2
+ 7 1 0.500 1 --> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_18 --> H001 6 1 0.500 1 --> 2
+ 7 1 0.500 1 --> 2
+ node_20 --> H008 11 1 0.333 2 ==> 1
+ node_23 --> node_22 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_21 --> H007 12 1 0.333 2 ==> 1
+ node_22 --> H012 11 1 0.333 2 --> 1
+ node_23 --> H006 11 1 0.333 2 --> 1
+ node_24 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 58 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #58 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 21 0 0 0
+ 18 21 2 2 2
+ 17 18 3 3 3
+ 16 17 2 2 2
+H010 (2) 16 1 1 1
+H013 (6) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H001 (7) 17 0 0 0
+H014 (5) 18 0 0 0
+ 19 21 2 2 2
+H007 (3) 19 1 1 1
+H012 (10) 19 1 1 1
+H011 (13) 19 0 0 0
+ 20 21 1 1 1
+H008 (4) 20 1 1 1
+H006 (12) 20 0 0 0
+H009 (11) 21 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /----------------------------- H010
+| |
+| +----------------------------- H013
+| |
+| /-------------16 /--------------- H003
+| | +------------15
+| | | \--------------- H005
+| /------------17 |
+| | | \----------------------------- H000
+| | |
++-------------18 \-------------------------------------------- H001
+21 |
+| \---------------------------------------------------------- H014
+|
+| /--------------- H007
+| |
++--------------------------------------------------------19--------------- H012
+| |
+| \--------------- H011
+|
+| /--------------- H008
++--------------------------------------------------------20
+| \--------------- H006
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_18 9 1 0.500 1 ==> 2
+ 10 1 1.000 1 ==> 2
+ node_18 --> node_17 6 1 0.500 1 ==> 2
+ 7 1 0.500 1 ==> 2
+ 8 1 1.000 1 ==> 2
+ node_17 --> node_16 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_21 --> node_19 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_19 --> H007 12 1 0.333 2 ==> 1
+ node_19 --> H012 11 1 0.500 2 ==> 1
+ node_21 --> node_20 11 1 0.500 2 ==> 1
+ node_20 --> H008 9 1 0.500 1 ==> 2
+ node_21 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 59 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #59 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 23 0 0 0
+ 19 23 1 1 1
+ 18 19 1 1 1
+ 17 18 3 3 3
+ 16 17 2 2 2
+H010 (2) 16 1 1 1
+H013 (6) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H001 (7) 17 0 0 0
+H014 (5) 18 0 0 0
+H008 (4) 19 1 1 1
+ 22 23 0 0 1
+ 21 22 2 2 2
+H007 (3) 21 1 0 1
+ 20 21 0 0 1
+H012 (10) 20 1 1 1
+H011 (13) 20 0 0 0
+H009 (11) 22 1 0 1
+H006 (12) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------------ H010
+| |
+| +------------------------ H013
+| |
+| /----------16 /------------ H003
+| | +----------15
+| | | \------------ H005
+| /-----------17 |
+| | | \------------------------ H000
+| | |
+| /----------18 \------------------------------------ H001
+23 | |
++----------19 \------------------------------------------------- H014
+| |
+| \------------------------------------------------------------- H008
+|
+| /------------------------ H007
+| |
+| /----------21 /------------ H012
+| | \----------20
++-----------------------------------22 \------------ H011
+| |
+| \------------------------------------ H009
+|
+\------------------------------------------------------------------------- H006
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_19 9 1 1.000 1 ==> 2
+ node_19 --> node_18 10 1 1.000 1 ==> 2
+ node_18 --> node_17 6 1 0.500 1 ==> 2
+ 7 1 0.500 1 ==> 2
+ 8 1 1.000 1 ==> 2
+ node_17 --> node_16 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_19 --> H008 11 1 0.333 2 ==> 1
+ node_22 --> node_21 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_21 --> H007 12 1 0.333 2 --> 1
+ node_20 --> H012 11 1 0.333 2 ==> 1
+ node_22 --> H009 12 1 0.333 2 --> 1
+ node_23 --> H006 11 1 0.333 2 ==> 1
+
+Tree number 60 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #60 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 23 0 0 0
+ 19 23 1 1 1
+ 18 19 1 1 1
+ 17 18 3 3 3
+ 16 17 2 2 2
+H010 (2) 16 1 1 1
+H013 (6) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H001 (7) 17 0 0 0
+H014 (5) 18 0 0 0
+H008 (4) 19 1 1 1
+ 22 23 0 0 1
+ 21 22 2 2 2
+ 20 21 0 0 1
+H007 (3) 20 1 1 1
+H011 (13) 20 0 0 0
+H012 (10) 21 1 0 1
+H006 (12) 22 1 0 1
+H009 (11) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------------ H010
+| |
+| +------------------------ H013
+| |
+| /----------16 /------------ H003
+| | +----------15
+| | | \------------ H005
+| /-----------17 |
+| | | \------------------------ H000
+| | |
+| /----------18 \------------------------------------ H001
+23 | |
++----------19 \------------------------------------------------- H014
+| |
+| \------------------------------------------------------------- H008
+|
+| /------------ H007
+| /----------20
+| | \------------ H011
+| /----------21
+| | \------------------------ H012
++-----------------------------------22
+| \------------------------------------ H006
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_19 9 1 1.000 1 ==> 2
+ node_19 --> node_18 10 1 1.000 1 ==> 2
+ node_18 --> node_17 6 1 0.500 1 ==> 2
+ 7 1 0.500 1 ==> 2
+ 8 1 1.000 1 ==> 2
+ node_17 --> node_16 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_19 --> H008 11 1 0.333 2 ==> 1
+ node_22 --> node_21 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_20 --> H007 12 1 0.333 2 ==> 1
+ node_21 --> H012 11 1 0.333 2 --> 1
+ node_22 --> H006 11 1 0.333 2 --> 1
+ node_23 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 61 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #61 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 21 0 0 0
+ 18 21 2 2 2
+ 17 18 3 3 3
+ 16 17 2 2 2
+H010 (2) 16 1 1 1
+H001 (7) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H013 (6) 17 0 0 0
+H014 (5) 18 0 0 0
+ 19 21 2 2 2
+H007 (3) 19 1 1 1
+H012 (10) 19 1 1 1
+H011 (13) 19 0 0 0
+ 20 21 1 1 1
+H008 (4) 20 1 1 1
+H006 (12) 20 0 0 0
+H009 (11) 21 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /----------------------------- H010
+| |
+| +----------------------------- H001
+| |
+| /-------------16 /--------------- H003
+| | +------------15
+| | | \--------------- H005
+| /------------17 |
+| | | \----------------------------- H000
+| | |
++-------------18 \-------------------------------------------- H013
+21 |
+| \---------------------------------------------------------- H014
+|
+| /--------------- H007
+| |
++--------------------------------------------------------19--------------- H012
+| |
+| \--------------- H011
+|
+| /--------------- H008
++--------------------------------------------------------20
+| \--------------- H006
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_18 9 1 0.500 1 ==> 2
+ 10 1 1.000 1 ==> 2
+ node_18 --> node_17 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ 8 1 1.000 1 ==> 2
+ node_17 --> node_16 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_21 --> node_19 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_19 --> H007 12 1 0.333 2 ==> 1
+ node_19 --> H012 11 1 0.500 2 ==> 1
+ node_21 --> node_20 11 1 0.500 2 ==> 1
+ node_20 --> H008 9 1 0.500 1 ==> 2
+ node_21 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 62 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #62 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 23 0 0 0
+ 19 23 1 1 1
+ 18 19 1 1 1
+ 17 18 3 3 3
+ 16 17 2 2 2
+H010 (2) 16 1 1 1
+H001 (7) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H013 (6) 17 0 0 0
+H014 (5) 18 0 0 0
+H008 (4) 19 1 1 1
+ 22 23 0 0 1
+ 21 22 2 2 2
+H007 (3) 21 1 0 1
+ 20 21 0 0 1
+H012 (10) 20 1 1 1
+H011 (13) 20 0 0 0
+H009 (11) 22 1 0 1
+H006 (12) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------------ H010
+| |
+| +------------------------ H001
+| |
+| /----------16 /------------ H003
+| | +----------15
+| | | \------------ H005
+| /-----------17 |
+| | | \------------------------ H000
+| | |
+| /----------18 \------------------------------------ H013
+23 | |
++----------19 \------------------------------------------------- H014
+| |
+| \------------------------------------------------------------- H008
+|
+| /------------------------ H007
+| |
+| /----------21 /------------ H012
+| | \----------20
++-----------------------------------22 \------------ H011
+| |
+| \------------------------------------ H009
+|
+\------------------------------------------------------------------------- H006
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_19 9 1 1.000 1 ==> 2
+ node_19 --> node_18 10 1 1.000 1 ==> 2
+ node_18 --> node_17 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ 8 1 1.000 1 ==> 2
+ node_17 --> node_16 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_19 --> H008 11 1 0.333 2 ==> 1
+ node_22 --> node_21 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_21 --> H007 12 1 0.333 2 --> 1
+ node_20 --> H012 11 1 0.333 2 ==> 1
+ node_22 --> H009 12 1 0.333 2 --> 1
+ node_23 --> H006 11 1 0.333 2 ==> 1
+
+Tree number 63 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #63 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 23 0 0 0
+ 19 23 1 1 1
+ 18 19 1 1 1
+ 17 18 3 3 3
+ 16 17 2 2 2
+H010 (2) 16 1 1 1
+H001 (7) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H013 (6) 17 0 0 0
+H014 (5) 18 0 0 0
+H008 (4) 19 1 1 1
+ 22 23 0 0 1
+ 21 22 2 2 2
+ 20 21 0 0 1
+H007 (3) 20 1 1 1
+H011 (13) 20 0 0 0
+H012 (10) 21 1 0 1
+H006 (12) 22 1 0 1
+H009 (11) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------------ H010
+| |
+| +------------------------ H001
+| |
+| /----------16 /------------ H003
+| | +----------15
+| | | \------------ H005
+| /-----------17 |
+| | | \------------------------ H000
+| | |
+| /----------18 \------------------------------------ H013
+23 | |
++----------19 \------------------------------------------------- H014
+| |
+| \------------------------------------------------------------- H008
+|
+| /------------ H007
+| /----------20
+| | \------------ H011
+| /----------21
+| | \------------------------ H012
++-----------------------------------22
+| \------------------------------------ H006
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_19 9 1 1.000 1 ==> 2
+ node_19 --> node_18 10 1 1.000 1 ==> 2
+ node_18 --> node_17 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ 8 1 1.000 1 ==> 2
+ node_17 --> node_16 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_19 --> H008 11 1 0.333 2 ==> 1
+ node_22 --> node_21 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_20 --> H007 12 1 0.333 2 ==> 1
+ node_21 --> H012 11 1 0.333 2 --> 1
+ node_22 --> H006 11 1 0.333 2 --> 1
+ node_23 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 64 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #64 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 25 0 0 0
+ 21 25 0 0 1
+ 19 21 2 1 2
+ 18 19 1 1 3
+ 17 18 2 2 2
+ 16 17 2 0 2
+H010 (2) 16 1 1 1
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H001 (7) 17 0 0 2
+H013 (6) 18 2 0 2
+H014 (5) 19 0 0 0
+ 20 21 1 1 1
+H008 (4) 20 1 0 1
+H006 (12) 20 0 0 1
+ 24 25 0 0 1
+ 23 24 2 2 2
+H007 (3) 23 1 0 1
+ 22 23 0 0 1
+H012 (10) 22 1 1 1
+H011 (13) 22 0 0 0
+H009 (11) 24 1 0 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /--------------------- H010
+| |
+| | /---------- H003
+| /--------16---------15
+| | | \---------- H005
+| | |
+| /---------17 \--------------------- H000
+| | |
+| /--------18 \------------------------------- H001
+| | |
+25 /---------19 \------------------------------------------ H013
+| | |
+| | \---------------------------------------------------- H014
++--------21
+| | /---------- H008
+| \---------------------------------------------------20
+| \---------- H006
+|
+| /--------------------- H007
+| |
+| /--------23 /---------- H012
+| | \---------22
+\----------------------------------------24 \---------- H011
+ |
+ \------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_19 9 1 0.500 1 --> 2
+ 10 1 1.000 1 ==> 2
+ node_19 --> node_18 8 1 1.000 1 ==> 2
+ node_18 --> node_17 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_17 --> node_16 1 1 0.333 1 --> 2
+ 2 1 0.333 1 --> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_18 --> H013 1 1 0.333 1 --> 2
+ 2 1 0.333 1 --> 2
+ node_21 --> node_20 11 1 0.500 2 ==> 1
+ node_20 --> H008 9 1 0.500 1 --> 2
+ node_24 --> node_23 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_23 --> H007 12 1 0.333 2 --> 1
+ node_22 --> H012 11 1 0.500 2 ==> 1
+ node_24 --> H009 12 1 0.333 2 --> 1
+
+Tree number 65 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #65 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 24 0 0 0
+ 19 24 2 2 2
+ 18 19 1 1 3
+ 17 18 2 2 2
+ 16 17 2 0 2
+H010 (2) 16 1 1 1
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H001 (7) 17 0 0 2
+H013 (6) 18 2 0 2
+H014 (5) 19 0 0 0
+ 22 24 0 0 1
+ 21 22 2 2 2
+H007 (3) 21 1 0 1
+ 20 21 0 0 1
+H012 (10) 20 1 1 1
+H011 (13) 20 0 0 0
+H009 (11) 22 1 0 1
+ 23 24 1 1 1
+H008 (4) 23 1 1 1
+H006 (12) 23 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------------ H010
+| |
+| | /------------ H003
+| /----------16----------15
+| | | \------------ H005
+| | |
+| /-----------17 \------------------------ H000
+| | |
+| /----------18 \------------------------------------ H001
+| | |
++----------19 \------------------------------------------------- H013
+24 |
+| \------------------------------------------------------------- H014
+|
+| /------------------------ H007
+| |
+| /----------21 /------------ H012
+| | \----------20
++-----------------------------------22 \------------ H011
+| |
+| \------------------------------------ H009
+|
+| /------------ H008
+\-----------------------------------------------------------23
+ \------------ H006
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_24 --> node_19 9 1 0.500 1 ==> 2
+ 10 1 1.000 1 ==> 2
+ node_19 --> node_18 8 1 1.000 1 ==> 2
+ node_18 --> node_17 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_17 --> node_16 1 1 0.333 1 --> 2
+ 2 1 0.333 1 --> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_18 --> H013 1 1 0.333 1 --> 2
+ 2 1 0.333 1 --> 2
+ node_22 --> node_21 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_21 --> H007 12 1 0.333 2 --> 1
+ node_20 --> H012 11 1 0.500 2 ==> 1
+ node_22 --> H009 12 1 0.333 2 --> 1
+ node_24 --> node_23 11 1 0.500 2 ==> 1
+ node_23 --> H008 9 1 0.500 1 ==> 2
+
+Tree number 66 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #66 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 23 0 0 0
+ 19 23 2 2 2
+ 18 19 1 1 3
+ 17 18 2 2 2
+ 16 17 2 0 2
+H010 (2) 16 1 1 1
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H001 (7) 17 0 0 2
+H013 (6) 18 2 0 2
+H014 (5) 19 0 0 0
+ 22 23 1 1 1
+ 21 22 2 2 2
+ 20 21 1 1 1
+H007 (3) 20 1 1 1
+H011 (13) 20 0 0 0
+H012 (10) 21 0 0 0
+H008 (4) 22 1 1 1
+H006 (12) 22 0 0 0
+H009 (11) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------------ H010
+| |
+| | /------------ H003
+| /----------16----------15
+| | | \------------ H005
+| | |
+| /-----------17 \------------------------ H000
+| | |
+| /----------18 \------------------------------------ H001
+| | |
++----------19 \------------------------------------------------- H013
+23 |
+| \------------------------------------------------------------- H014
+|
+| /------------ H007
+| /----------20
+| | \------------ H011
+| /----------21
+| | \------------------------ H012
+| |
++-----------------------------------22------------------------------------ H008
+| |
+| \------------------------------------ H006
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_19 9 1 0.500 1 ==> 2
+ 10 1 1.000 1 ==> 2
+ node_19 --> node_18 8 1 1.000 1 ==> 2
+ node_18 --> node_17 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_17 --> node_16 1 1 0.333 1 --> 2
+ 2 1 0.333 1 --> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_18 --> H013 1 1 0.333 1 --> 2
+ 2 1 0.333 1 --> 2
+ node_23 --> node_22 11 1 0.500 2 ==> 1
+ node_22 --> node_21 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_21 --> node_20 11 1 0.500 1 ==> 2
+ node_20 --> H007 12 1 0.333 2 ==> 1
+ node_22 --> H008 9 1 0.500 1 ==> 2
+ node_23 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 67 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #67 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 24 0 0 0
+ 19 24 2 2 2
+ 18 19 1 1 3
+ 17 18 2 2 2
+ 16 17 2 0 2
+H010 (2) 16 1 1 1
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H001 (7) 17 0 0 2
+H013 (6) 18 2 0 2
+H014 (5) 19 0 0 0
+ 23 24 0 0 1
+ 21 23 2 2 2
+ 20 21 0 0 1
+H007 (3) 20 1 1 1
+H011 (13) 20 0 0 0
+H012 (10) 21 1 0 1
+ 22 23 1 0 1
+H008 (4) 22 1 1 1
+H006 (12) 22 0 0 0
+H009 (11) 24 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------------ H010
+| |
+| | /------------ H003
+| /----------16----------15
+| | | \------------ H005
+| | |
+| /-----------17 \------------------------ H000
+| | |
+| /----------18 \------------------------------------ H001
+| | |
++----------19 \------------------------------------------------- H013
+24 |
+| \------------------------------------------------------------- H014
+|
+| /------------ H007
+| /----------20
+| | \------------ H011
+| /----------21
+| | \------------------------ H012
++-----------------------------------23
+| | /------------ H008
+| \----------------------22
+| \------------ H006
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_24 --> node_19 9 1 0.500 1 ==> 2
+ 10 1 1.000 1 ==> 2
+ node_19 --> node_18 8 1 1.000 1 ==> 2
+ node_18 --> node_17 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_17 --> node_16 1 1 0.333 1 --> 2
+ 2 1 0.333 1 --> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_18 --> H013 1 1 0.333 1 --> 2
+ 2 1 0.333 1 --> 2
+ node_23 --> node_21 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_20 --> H007 12 1 0.333 2 ==> 1
+ node_21 --> H012 11 1 0.500 2 --> 1
+ node_23 --> node_22 11 1 0.500 2 --> 1
+ node_22 --> H008 9 1 0.500 1 ==> 2
+ node_24 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 68 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #68 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 25 0 0 0
+ 24 25 0 0 1
+ 20 24 1 1 1
+ 19 20 1 1 2
+ 18 19 1 1 3
+ 17 18 2 2 2
+ 16 17 2 0 2
+H010 (2) 16 1 1 1
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H001 (7) 17 0 0 2
+H013 (6) 18 2 0 2
+H014 (5) 19 0 0 0
+H008 (4) 20 1 0 1
+ 23 24 0 0 1
+ 22 23 2 2 2
+ 21 22 0 0 1
+H007 (3) 21 1 1 1
+H011 (13) 21 0 0 0
+H012 (10) 22 1 0 1
+H006 (12) 23 1 0 1
+H009 (11) 25 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------ H010
+| |
+| | /--------- H003
+| /-------16-------15
+| | | \--------- H005
+| | |
+| /--------17 \------------------ H000
+| | |
+| /-------18 \--------------------------- H001
+| | |
+| /-------19 \------------------------------------- H013
+25 | |
+| /-------20 \---------------------------------------------- H014
+| | |
+| | \------------------------------------------------------- H008
+| |
+| | /--------- H007
++-------24 /-------21
+| | | \--------- H011
+| | /-------22
+| | | \------------------ H012
+| \-----------------------------------23
+| \--------------------------- H006
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_24 --> node_20 9 1 1.000 1 ==> 2
+ node_20 --> node_19 10 1 1.000 1 ==> 2
+ node_19 --> node_18 8 1 1.000 1 ==> 2
+ node_18 --> node_17 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_17 --> node_16 1 1 0.333 1 --> 2
+ 2 1 0.333 1 --> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_18 --> H013 1 1 0.333 1 --> 2
+ 2 1 0.333 1 --> 2
+ node_20 --> H008 11 1 0.333 2 --> 1
+ node_23 --> node_22 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_21 --> H007 12 1 0.333 2 ==> 1
+ node_22 --> H012 11 1 0.333 2 --> 1
+ node_23 --> H006 11 1 0.333 2 --> 1
+ node_25 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 69 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #69 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 25 0 0 0
+ 21 25 0 0 1
+ 20 21 1 1 1
+ 19 20 1 1 2
+ 18 19 1 1 3
+ 17 18 2 2 2
+ 16 17 2 0 2
+H010 (2) 16 1 1 1
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H001 (7) 17 0 0 2
+H013 (6) 18 2 0 2
+H014 (5) 19 0 0 0
+H008 (4) 20 1 0 1
+H006 (12) 21 1 0 1
+ 24 25 0 0 1
+ 23 24 2 2 2
+H007 (3) 23 1 0 1
+ 22 23 0 0 1
+H012 (10) 22 1 1 1
+H011 (13) 22 0 0 0
+H009 (11) 24 1 0 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------ H010
+| |
+| | /--------- H003
+| /-------16-------15
+| | | \--------- H005
+| | |
+| /--------17 \------------------ H000
+| | |
+| /-------18 \--------------------------- H001
+| | |
+25 /-------19 \------------------------------------- H013
+| | |
+| /-------20 \---------------------------------------------- H014
+| | |
++-------21 \------------------------------------------------------- H008
+| |
+| \---------------------------------------------------------------- H006
+|
+| /------------------ H007
+| |
+| /-------23 /--------- H012
+| | \-------22
+\--------------------------------------------24 \--------- H011
+ |
+ \--------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_20 9 1 1.000 1 ==> 2
+ node_20 --> node_19 10 1 1.000 1 ==> 2
+ node_19 --> node_18 8 1 1.000 1 ==> 2
+ node_18 --> node_17 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_17 --> node_16 1 1 0.333 1 --> 2
+ 2 1 0.333 1 --> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_18 --> H013 1 1 0.333 1 --> 2
+ 2 1 0.333 1 --> 2
+ node_20 --> H008 11 1 0.333 2 --> 1
+ node_21 --> H006 11 1 0.333 2 --> 1
+ node_24 --> node_23 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_23 --> H007 12 1 0.333 2 --> 1
+ node_22 --> H012 11 1 0.333 2 ==> 1
+ node_24 --> H009 12 1 0.333 2 --> 1
+
+Tree number 70 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #70 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 25 0 0 0
+ 24 25 0 0 1
+ 19 24 2 1 2
+ 18 19 1 1 3
+ 17 18 2 2 2
+ 16 17 2 0 2
+H010 (2) 16 1 1 1
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H001 (7) 17 0 0 2
+H013 (6) 18 2 0 2
+H014 (5) 19 0 0 0
+ 23 24 1 1 1
+ 22 23 0 0 1
+ 21 22 2 2 2
+ 20 21 1 1 1
+H007 (3) 20 1 1 1
+H011 (13) 20 0 0 0
+H012 (10) 21 0 0 0
+H006 (12) 22 0 0 0
+H008 (4) 23 1 0 1
+H009 (11) 25 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /--------------------- H010
+| |
+| | /---------- H003
+| /--------16---------15
+| | | \---------- H005
+| | |
+| /---------17 \--------------------- H000
+| | |
+| /--------18 \------------------------------- H001
+| | |
+| /---------19 \------------------------------------------ H013
+25 | |
+| | \---------------------------------------------------- H014
+| |
+| | /---------- H007
+| | /---------20
++--------24 | \---------- H011
+| | /--------21
+| | | \--------------------- H012
+| | /---------22
+| | | \------------------------------- H006
+| \-------------------23
+| \------------------------------------------ H008
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_24 --> node_19 9 1 0.500 1 --> 2
+ 10 1 1.000 1 ==> 2
+ node_19 --> node_18 8 1 1.000 1 ==> 2
+ node_18 --> node_17 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_17 --> node_16 1 1 0.333 1 --> 2
+ 2 1 0.333 1 --> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_18 --> H013 1 1 0.333 1 --> 2
+ 2 1 0.333 1 --> 2
+ node_24 --> node_23 11 1 0.500 2 ==> 1
+ node_22 --> node_21 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_21 --> node_20 11 1 0.500 1 ==> 2
+ node_20 --> H007 12 1 0.333 2 ==> 1
+ node_23 --> H008 9 1 0.500 1 --> 2
+ node_25 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 71 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #71 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 25 0 0 0
+ 24 25 0 0 1
+ 20 24 1 1 1
+ 19 20 1 1 2
+ 18 19 1 1 3
+ 17 18 2 2 2
+ 16 17 2 0 2
+H010 (2) 16 1 1 1
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H013 (6) 17 0 0 2
+H001 (7) 18 2 0 2
+H014 (5) 19 0 0 0
+H008 (4) 20 1 0 1
+ 23 24 0 0 1
+ 22 23 2 2 2
+ 21 22 0 0 1
+H007 (3) 21 1 1 1
+H011 (13) 21 0 0 0
+H012 (10) 22 1 0 1
+H006 (12) 23 1 0 1
+H009 (11) 25 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------ H010
+| |
+| | /--------- H003
+| /-------16-------15
+| | | \--------- H005
+| | |
+| /--------17 \------------------ H000
+| | |
+| /-------18 \--------------------------- H013
+| | |
+| /-------19 \------------------------------------- H001
+25 | |
+| /-------20 \---------------------------------------------- H014
+| | |
+| | \------------------------------------------------------- H008
+| |
+| | /--------- H007
++-------24 /-------21
+| | | \--------- H011
+| | /-------22
+| | | \------------------ H012
+| \-----------------------------------23
+| \--------------------------- H006
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_24 --> node_20 9 1 1.000 1 ==> 2
+ node_20 --> node_19 10 1 1.000 1 ==> 2
+ node_19 --> node_18 8 1 1.000 1 ==> 2
+ node_18 --> node_17 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_17 --> node_16 6 1 0.500 1 --> 2
+ 7 1 0.500 1 --> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_18 --> H001 6 1 0.500 1 --> 2
+ 7 1 0.500 1 --> 2
+ node_20 --> H008 11 1 0.333 2 --> 1
+ node_23 --> node_22 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_21 --> H007 12 1 0.333 2 ==> 1
+ node_22 --> H012 11 1 0.333 2 --> 1
+ node_23 --> H006 11 1 0.333 2 --> 1
+ node_25 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 72 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #72 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 25 0 0 0
+ 24 25 0 0 1
+ 21 24 0 0 1
+ 20 21 1 1 1
+ 19 20 1 1 2
+ 18 19 1 1 3
+ 17 18 2 2 2
+ 16 17 2 0 2
+H010 (2) 16 1 1 1
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H013 (6) 17 0 0 2
+H001 (7) 18 2 0 2
+H014 (5) 19 0 0 0
+H008 (4) 20 1 0 1
+H006 (12) 21 1 0 1
+ 23 24 2 2 2
+ 22 23 0 0 1
+H007 (3) 22 1 1 1
+H011 (13) 22 0 0 0
+H012 (10) 23 1 0 1
+H009 (11) 25 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /---------------- H010
+| |
+| | /-------- H003
+| /------16------15
+| | | \-------- H005
+| | |
+| /------17 \---------------- H000
+| | |
+| /-------18 \------------------------ H013
+| | |
+| /------19 \-------------------------------- H001
+25 | |
+| /------20 \----------------------------------------- H014
+| | |
+| /------21 \------------------------------------------------- H008
+| | |
+| | \--------------------------------------------------------- H006
+| |
++------24 /-------- H007
+| | /------22
+| | | \-------- H011
+| \-----------------------------------------------23
+| \---------------- H012
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_20 9 1 1.000 1 ==> 2
+ node_20 --> node_19 10 1 1.000 1 ==> 2
+ node_19 --> node_18 8 1 1.000 1 ==> 2
+ node_18 --> node_17 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_17 --> node_16 6 1 0.500 1 --> 2
+ 7 1 0.500 1 --> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_18 --> H001 6 1 0.500 1 --> 2
+ 7 1 0.500 1 --> 2
+ node_20 --> H008 11 1 0.333 2 --> 1
+ node_21 --> H006 11 1 0.333 2 --> 1
+ node_24 --> node_23 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_22 --> H007 12 1 0.333 2 ==> 1
+ node_23 --> H012 11 1 0.333 2 --> 1
+ node_25 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 73 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #73 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 23 0 0 0
+ 18 23 2 2 2
+ 17 18 3 3 3
+ 16 17 2 2 2
+H010 (2) 16 1 1 1
+H001 (7) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H013 (6) 17 0 0 0
+H014 (5) 18 0 0 0
+ 21 23 0 0 1
+ 20 21 2 2 2
+H007 (3) 20 1 0 1
+ 19 20 0 0 1
+H012 (10) 19 1 1 1
+H011 (13) 19 0 0 0
+H009 (11) 21 1 0 1
+ 22 23 1 1 1
+H008 (4) 22 1 1 1
+H006 (12) 22 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /----------------------------- H010
+| |
+| +----------------------------- H001
+| |
+| /-------------16 /--------------- H003
+| | +------------15
+| | | \--------------- H005
+| /------------17 |
+| | | \----------------------------- H000
+| | |
++-------------18 \-------------------------------------------- H013
+23 |
+| \---------------------------------------------------------- H014
+|
+| /----------------------------- H007
+| |
+| /-------------20 /--------------- H012
+| | \------------19
++---------------------------21 \--------------- H011
+| |
+| \-------------------------------------------- H009
+|
+| /--------------- H008
+\--------------------------------------------------------22
+ \--------------- H006
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_18 9 1 0.500 1 ==> 2
+ 10 1 1.000 1 ==> 2
+ node_18 --> node_17 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ 8 1 1.000 1 ==> 2
+ node_17 --> node_16 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_21 --> node_20 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_20 --> H007 12 1 0.333 2 --> 1
+ node_19 --> H012 11 1 0.500 2 ==> 1
+ node_21 --> H009 12 1 0.333 2 --> 1
+ node_23 --> node_22 11 1 0.500 2 ==> 1
+ node_22 --> H008 9 1 0.500 1 ==> 2
+
+Tree number 74 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #74 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 23 0 0 0
+ 18 23 2 2 2
+ 17 18 3 3 3
+ 16 17 2 2 2
+H010 (2) 16 1 1 1
+H001 (7) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H013 (6) 17 0 0 0
+H014 (5) 18 0 0 0
+ 22 23 0 0 1
+ 20 22 2 2 2
+ 19 20 0 0 1
+H007 (3) 19 1 1 1
+H011 (13) 19 0 0 0
+H012 (10) 20 1 0 1
+ 21 22 1 0 1
+H008 (4) 21 1 1 1
+H006 (12) 21 0 0 0
+H009 (11) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /----------------------------- H010
+| |
+| +----------------------------- H001
+| |
+| /-------------16 /--------------- H003
+| | +------------15
+| | | \--------------- H005
+| /------------17 |
+| | | \----------------------------- H000
+| | |
++-------------18 \-------------------------------------------- H013
+23 |
+| \---------------------------------------------------------- H014
+|
+| /--------------- H007
+| /------------19
+| | \--------------- H011
+| /-------------20
+| | \----------------------------- H012
++---------------------------22
+| | /--------------- H008
+| \---------------------------21
+| \--------------- H006
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_18 9 1 0.500 1 ==> 2
+ 10 1 1.000 1 ==> 2
+ node_18 --> node_17 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ 8 1 1.000 1 ==> 2
+ node_17 --> node_16 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_22 --> node_20 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_19 --> H007 12 1 0.333 2 ==> 1
+ node_20 --> H012 11 1 0.500 2 --> 1
+ node_22 --> node_21 11 1 0.500 2 --> 1
+ node_21 --> H008 9 1 0.500 1 ==> 2
+ node_23 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 75 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #75 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 22 0 0 0
+ 18 22 2 2 2
+ 17 18 3 3 3
+ 16 17 2 2 2
+H010 (2) 16 1 1 1
+H001 (7) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H013 (6) 17 0 0 0
+H014 (5) 18 0 0 0
+ 21 22 1 1 1
+ 20 21 2 2 2
+ 19 20 1 1 1
+H007 (3) 19 1 1 1
+H011 (13) 19 0 0 0
+H012 (10) 20 0 0 0
+H008 (4) 21 1 1 1
+H006 (12) 21 0 0 0
+H009 (11) 22 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /----------------------------- H010
+| |
+| +----------------------------- H001
+| |
+| /-------------16 /--------------- H003
+| | +------------15
+| | | \--------------- H005
+| /------------17 |
+| | | \----------------------------- H000
+| | |
++-------------18 \-------------------------------------------- H013
+22 |
+| \---------------------------------------------------------- H014
+|
+| /--------------- H007
+| /------------19
+| | \--------------- H011
+| /-------------20
+| | \----------------------------- H012
+| |
++---------------------------21-------------------------------------------- H008
+| |
+| \-------------------------------------------- H006
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_18 9 1 0.500 1 ==> 2
+ 10 1 1.000 1 ==> 2
+ node_18 --> node_17 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ 8 1 1.000 1 ==> 2
+ node_17 --> node_16 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_22 --> node_21 11 1 0.500 2 ==> 1
+ node_21 --> node_20 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_20 --> node_19 11 1 0.500 1 ==> 2
+ node_19 --> H007 12 1 0.333 2 ==> 1
+ node_21 --> H008 9 1 0.500 1 ==> 2
+ node_22 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 76 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #76 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 24 0 0 0
+ 23 24 0 0 1
+ 18 23 2 1 2
+ 17 18 3 3 3
+ 16 17 2 2 2
+H010 (2) 16 1 1 1
+H001 (7) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H013 (6) 17 0 0 0
+H014 (5) 18 0 0 0
+ 22 23 1 1 1
+ 21 22 0 0 1
+ 20 21 2 2 2
+ 19 20 1 1 1
+H007 (3) 19 1 1 1
+H011 (13) 19 0 0 0
+H012 (10) 20 0 0 0
+H006 (12) 21 0 0 0
+H008 (4) 22 1 0 1
+H009 (11) 24 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------------ H010
+| |
+| +------------------------ H001
+| |
+| /----------16 /------------ H003
+| | +----------15
+| | | \------------ H005
+| /-----------17 |
+| | | \------------------------ H000
+| | |
+| /----------18 \------------------------------------ H013
+24 | |
+| | \------------------------------------------------- H014
+| |
+| | /------------ H007
+| | /----------19
++----------23 | \------------ H011
+| | /----------20
+| | | \------------------------ H012
+| | /-----------21
+| | | \------------------------------------ H006
+| \----------22
+| \------------------------------------------------- H008
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_18 9 1 0.500 1 --> 2
+ 10 1 1.000 1 ==> 2
+ node_18 --> node_17 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ 8 1 1.000 1 ==> 2
+ node_17 --> node_16 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_23 --> node_22 11 1 0.500 2 ==> 1
+ node_21 --> node_20 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_20 --> node_19 11 1 0.500 1 ==> 2
+ node_19 --> H007 12 1 0.333 2 ==> 1
+ node_22 --> H008 9 1 0.500 1 --> 2
+ node_24 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 77 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #77 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 24 0 0 0
+ 20 24 0 0 1
+ 18 20 2 1 2
+ 17 18 3 3 3
+ 16 17 2 2 2
+H010 (2) 16 1 1 1
+H001 (7) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H013 (6) 17 0 0 0
+H014 (5) 18 0 0 0
+ 19 20 1 1 1
+H008 (4) 19 1 0 1
+H006 (12) 19 0 0 1
+ 23 24 0 0 1
+ 22 23 2 2 2
+H007 (3) 22 1 0 1
+ 21 22 0 0 1
+H012 (10) 21 1 1 1
+H011 (13) 21 0 0 0
+H009 (11) 23 1 0 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------------ H010
+| |
+| +------------------------ H001
+| |
+| /----------16 /------------ H003
+| | +----------15
+| | | \------------ H005
+| /-----------17 |
+| | | \------------------------ H000
+| | |
+24 /----------18 \------------------------------------ H013
+| | |
+| | \------------------------------------------------- H014
++----------20
+| | /------------ H008
+| \-----------------------------------------------19
+| \------------ H006
+|
+| /------------------------ H007
+| |
+| /----------22 /------------ H012
+| | \----------21
+\-----------------------------------23 \------------ H011
+ |
+ \------------------------------------ H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_20 --> node_18 9 1 0.500 1 --> 2
+ 10 1 1.000 1 ==> 2
+ node_18 --> node_17 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ 8 1 1.000 1 ==> 2
+ node_17 --> node_16 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_20 --> node_19 11 1 0.500 2 ==> 1
+ node_19 --> H008 9 1 0.500 1 --> 2
+ node_23 --> node_22 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_22 --> H007 12 1 0.333 2 --> 1
+ node_21 --> H012 11 1 0.500 2 ==> 1
+ node_23 --> H009 12 1 0.333 2 --> 1
+
+Tree number 78 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #78 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 24 0 0 0
+ 20 24 0 0 1
+ 18 20 2 1 2
+ 17 18 3 3 3
+ 16 17 2 2 2
+H010 (2) 16 1 1 1
+H013 (6) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H001 (7) 17 0 0 0
+H014 (5) 18 0 0 0
+ 19 20 1 1 1
+H008 (4) 19 1 0 1
+H006 (12) 19 0 0 1
+ 23 24 0 0 1
+ 22 23 2 2 2
+H007 (3) 22 1 0 1
+ 21 22 0 0 1
+H012 (10) 21 1 1 1
+H011 (13) 21 0 0 0
+H009 (11) 23 1 0 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------------ H010
+| |
+| +------------------------ H013
+| |
+| /----------16 /------------ H003
+| | +----------15
+| | | \------------ H005
+| /-----------17 |
+| | | \------------------------ H000
+| | |
+24 /----------18 \------------------------------------ H001
+| | |
+| | \------------------------------------------------- H014
++----------20
+| | /------------ H008
+| \-----------------------------------------------19
+| \------------ H006
+|
+| /------------------------ H007
+| |
+| /----------22 /------------ H012
+| | \----------21
+\-----------------------------------23 \------------ H011
+ |
+ \------------------------------------ H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_20 --> node_18 9 1 0.500 1 --> 2
+ 10 1 1.000 1 ==> 2
+ node_18 --> node_17 6 1 0.500 1 ==> 2
+ 7 1 0.500 1 ==> 2
+ 8 1 1.000 1 ==> 2
+ node_17 --> node_16 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_20 --> node_19 11 1 0.500 2 ==> 1
+ node_19 --> H008 9 1 0.500 1 --> 2
+ node_23 --> node_22 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_22 --> H007 12 1 0.333 2 --> 1
+ node_21 --> H012 11 1 0.500 2 ==> 1
+ node_23 --> H009 12 1 0.333 2 --> 1
+
+Tree number 79 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #79 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 23 0 0 0
+ 22 23 0 0 1
+ 19 22 1 1 1
+ 18 19 1 1 2
+ 17 18 3 3 3
+ 16 17 2 2 2
+H010 (2) 16 1 1 1
+H013 (6) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H001 (7) 17 0 0 0
+H014 (5) 18 0 0 0
+H008 (4) 19 1 0 1
+ 21 22 2 2 2
+ 20 21 0 0 1
+H007 (3) 20 1 1 1
+H011 (13) 20 0 0 0
+H012 (10) 21 1 0 1
+H006 (12) 22 1 0 1
+H009 (11) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /--------------------- H010
+| |
+| +--------------------- H013
+| |
+| /--------16 /---------- H003
+| | +---------15
+| | | \---------- H005
+| /---------17 |
+| | | \--------------------- H000
+| | |
+| /--------18 \------------------------------- H001
+23 | |
+| /---------19 \------------------------------------------ H014
+| | |
+| | \---------------------------------------------------- H008
+| |
+| | /---------- H007
++--------22 /---------20
+| | | \---------- H011
+| +----------------------------------------21
+| | \--------------------- H012
+| |
+| \--------------------------------------------------------------- H006
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_19 9 1 1.000 1 ==> 2
+ node_19 --> node_18 10 1 1.000 1 ==> 2
+ node_18 --> node_17 6 1 0.500 1 ==> 2
+ 7 1 0.500 1 ==> 2
+ 8 1 1.000 1 ==> 2
+ node_17 --> node_16 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_19 --> H008 11 1 0.333 2 --> 1
+ node_22 --> node_21 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_20 --> H007 12 1 0.333 2 ==> 1
+ node_21 --> H012 11 1 0.333 2 --> 1
+ node_22 --> H006 11 1 0.333 2 --> 1
+ node_23 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 80 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #80 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 24 0 0 0
+ 23 24 0 0 1
+ 18 23 2 1 2
+ 17 18 3 3 3
+ 16 17 2 2 2
+H010 (2) 16 1 1 1
+H013 (6) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H001 (7) 17 0 0 0
+H014 (5) 18 0 0 0
+ 22 23 1 1 1
+ 21 22 0 0 1
+ 20 21 2 2 2
+ 19 20 1 1 1
+H007 (3) 19 1 1 1
+H011 (13) 19 0 0 0
+H012 (10) 20 0 0 0
+H006 (12) 21 0 0 0
+H008 (4) 22 1 0 1
+H009 (11) 24 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------------ H010
+| |
+| +------------------------ H013
+| |
+| /----------16 /------------ H003
+| | +----------15
+| | | \------------ H005
+| /-----------17 |
+| | | \------------------------ H000
+| | |
+| /----------18 \------------------------------------ H001
+24 | |
+| | \------------------------------------------------- H014
+| |
+| | /------------ H007
+| | /----------19
++----------23 | \------------ H011
+| | /----------20
+| | | \------------------------ H012
+| | /-----------21
+| | | \------------------------------------ H006
+| \----------22
+| \------------------------------------------------- H008
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_18 9 1 0.500 1 --> 2
+ 10 1 1.000 1 ==> 2
+ node_18 --> node_17 6 1 0.500 1 ==> 2
+ 7 1 0.500 1 ==> 2
+ 8 1 1.000 1 ==> 2
+ node_17 --> node_16 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_23 --> node_22 11 1 0.500 2 ==> 1
+ node_21 --> node_20 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_20 --> node_19 11 1 0.500 1 ==> 2
+ node_19 --> H007 12 1 0.333 2 ==> 1
+ node_22 --> H008 9 1 0.500 1 --> 2
+ node_24 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 81 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #81 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 23 0 0 0
+ 18 23 2 2 2
+ 17 18 3 3 3
+ 16 17 2 2 2
+H010 (2) 16 1 1 1
+H013 (6) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H001 (7) 17 0 0 0
+H014 (5) 18 0 0 0
+ 22 23 0 0 1
+ 20 22 2 2 2
+ 19 20 0 0 1
+H007 (3) 19 1 1 1
+H011 (13) 19 0 0 0
+H012 (10) 20 1 0 1
+ 21 22 1 0 1
+H008 (4) 21 1 1 1
+H006 (12) 21 0 0 0
+H009 (11) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /----------------------------- H010
+| |
+| +----------------------------- H013
+| |
+| /-------------16 /--------------- H003
+| | +------------15
+| | | \--------------- H005
+| /------------17 |
+| | | \----------------------------- H000
+| | |
++-------------18 \-------------------------------------------- H001
+23 |
+| \---------------------------------------------------------- H014
+|
+| /--------------- H007
+| /------------19
+| | \--------------- H011
+| /-------------20
+| | \----------------------------- H012
++---------------------------22
+| | /--------------- H008
+| \---------------------------21
+| \--------------- H006
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_18 9 1 0.500 1 ==> 2
+ 10 1 1.000 1 ==> 2
+ node_18 --> node_17 6 1 0.500 1 ==> 2
+ 7 1 0.500 1 ==> 2
+ 8 1 1.000 1 ==> 2
+ node_17 --> node_16 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_22 --> node_20 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_19 --> H007 12 1 0.333 2 ==> 1
+ node_20 --> H012 11 1 0.500 2 --> 1
+ node_22 --> node_21 11 1 0.500 2 --> 1
+ node_21 --> H008 9 1 0.500 1 ==> 2
+ node_23 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 82 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #82 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 25 0 0 0
+ 21 25 0 0 1
+ 19 21 2 1 2
+ 18 19 1 1 3
+ 17 18 2 2 2
+ 16 17 2 0 2
+H010 (2) 16 1 1 1
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H013 (6) 17 0 0 2
+H001 (7) 18 2 0 2
+H014 (5) 19 0 0 0
+ 20 21 1 1 1
+H008 (4) 20 1 0 1
+H006 (12) 20 0 0 1
+ 24 25 0 0 1
+ 23 24 2 2 2
+H007 (3) 23 1 0 1
+ 22 23 0 0 1
+H012 (10) 22 1 1 1
+H011 (13) 22 0 0 0
+H009 (11) 24 1 0 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /--------------------- H010
+| |
+| | /---------- H003
+| /--------16---------15
+| | | \---------- H005
+| | |
+| /---------17 \--------------------- H000
+| | |
+| /--------18 \------------------------------- H013
+| | |
+25 /---------19 \------------------------------------------ H001
+| | |
+| | \---------------------------------------------------- H014
++--------21
+| | /---------- H008
+| \---------------------------------------------------20
+| \---------- H006
+|
+| /--------------------- H007
+| |
+| /--------23 /---------- H012
+| | \---------22
+\----------------------------------------24 \---------- H011
+ |
+ \------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_19 9 1 0.500 1 --> 2
+ 10 1 1.000 1 ==> 2
+ node_19 --> node_18 8 1 1.000 1 ==> 2
+ node_18 --> node_17 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_17 --> node_16 6 1 0.500 1 --> 2
+ 7 1 0.500 1 --> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_18 --> H001 6 1 0.500 1 --> 2
+ 7 1 0.500 1 --> 2
+ node_21 --> node_20 11 1 0.500 2 ==> 1
+ node_20 --> H008 9 1 0.500 1 --> 2
+ node_24 --> node_23 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_23 --> H007 12 1 0.333 2 --> 1
+ node_22 --> H012 11 1 0.500 2 ==> 1
+ node_24 --> H009 12 1 0.333 2 --> 1
+
+Tree number 83 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #83 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 23 0 0 0
+ 18 23 2 2 2
+ 17 18 3 3 3
+ 16 17 2 2 2
+H010 (2) 16 1 1 1
+H013 (6) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H001 (7) 17 0 0 0
+H014 (5) 18 0 0 0
+ 21 23 0 0 1
+ 20 21 2 2 2
+H007 (3) 20 1 0 1
+ 19 20 0 0 1
+H012 (10) 19 1 1 1
+H011 (13) 19 0 0 0
+H009 (11) 21 1 0 1
+ 22 23 1 1 1
+H008 (4) 22 1 1 1
+H006 (12) 22 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /----------------------------- H010
+| |
+| +----------------------------- H013
+| |
+| /-------------16 /--------------- H003
+| | +------------15
+| | | \--------------- H005
+| /------------17 |
+| | | \----------------------------- H000
+| | |
++-------------18 \-------------------------------------------- H001
+23 |
+| \---------------------------------------------------------- H014
+|
+| /----------------------------- H007
+| |
+| /-------------20 /--------------- H012
+| | \------------19
++---------------------------21 \--------------- H011
+| |
+| \-------------------------------------------- H009
+|
+| /--------------- H008
+\--------------------------------------------------------22
+ \--------------- H006
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_18 9 1 0.500 1 ==> 2
+ 10 1 1.000 1 ==> 2
+ node_18 --> node_17 6 1 0.500 1 ==> 2
+ 7 1 0.500 1 ==> 2
+ 8 1 1.000 1 ==> 2
+ node_17 --> node_16 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_21 --> node_20 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_20 --> H007 12 1 0.333 2 --> 1
+ node_19 --> H012 11 1 0.500 2 ==> 1
+ node_21 --> H009 12 1 0.333 2 --> 1
+ node_23 --> node_22 11 1 0.500 2 ==> 1
+ node_22 --> H008 9 1 0.500 1 ==> 2
+
+Tree number 84 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #84 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 23 0 0 0
+ 19 23 2 2 2
+ 18 19 1 1 3
+ 17 18 2 2 2
+ 16 17 2 0 2
+H010 (2) 16 1 1 1
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H013 (6) 17 0 0 2
+H001 (7) 18 2 0 2
+H014 (5) 19 0 0 0
+ 22 23 1 1 1
+ 21 22 2 2 2
+ 20 21 1 1 1
+H007 (3) 20 1 1 1
+H011 (13) 20 0 0 0
+H012 (10) 21 0 0 0
+H008 (4) 22 1 1 1
+H006 (12) 22 0 0 0
+H009 (11) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------------ H010
+| |
+| | /------------ H003
+| /----------16----------15
+| | | \------------ H005
+| | |
+| /-----------17 \------------------------ H000
+| | |
+| /----------18 \------------------------------------ H013
+| | |
++----------19 \------------------------------------------------- H001
+23 |
+| \------------------------------------------------------------- H014
+|
+| /------------ H007
+| /----------20
+| | \------------ H011
+| /----------21
+| | \------------------------ H012
+| |
++-----------------------------------22------------------------------------ H008
+| |
+| \------------------------------------ H006
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_19 9 1 0.500 1 ==> 2
+ 10 1 1.000 1 ==> 2
+ node_19 --> node_18 8 1 1.000 1 ==> 2
+ node_18 --> node_17 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_17 --> node_16 6 1 0.500 1 --> 2
+ 7 1 0.500 1 --> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_18 --> H001 6 1 0.500 1 --> 2
+ 7 1 0.500 1 --> 2
+ node_23 --> node_22 11 1 0.500 2 ==> 1
+ node_22 --> node_21 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_21 --> node_20 11 1 0.500 1 ==> 2
+ node_20 --> H007 12 1 0.333 2 ==> 1
+ node_22 --> H008 9 1 0.500 1 ==> 2
+ node_23 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 85 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #85 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 22 0 0 0
+ 18 22 2 2 2
+ 17 18 3 3 3
+ 16 17 2 2 2
+H010 (2) 16 1 1 1
+H013 (6) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H001 (7) 17 0 0 0
+H014 (5) 18 0 0 0
+ 21 22 1 1 1
+ 20 21 2 2 2
+ 19 20 1 1 1
+H007 (3) 19 1 1 1
+H011 (13) 19 0 0 0
+H012 (10) 20 0 0 0
+H008 (4) 21 1 1 1
+H006 (12) 21 0 0 0
+H009 (11) 22 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /----------------------------- H010
+| |
+| +----------------------------- H013
+| |
+| /-------------16 /--------------- H003
+| | +------------15
+| | | \--------------- H005
+| /------------17 |
+| | | \----------------------------- H000
+| | |
++-------------18 \-------------------------------------------- H001
+22 |
+| \---------------------------------------------------------- H014
+|
+| /--------------- H007
+| /------------19
+| | \--------------- H011
+| /-------------20
+| | \----------------------------- H012
+| |
++---------------------------21-------------------------------------------- H008
+| |
+| \-------------------------------------------- H006
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_18 9 1 0.500 1 ==> 2
+ 10 1 1.000 1 ==> 2
+ node_18 --> node_17 6 1 0.500 1 ==> 2
+ 7 1 0.500 1 ==> 2
+ 8 1 1.000 1 ==> 2
+ node_17 --> node_16 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_22 --> node_21 11 1 0.500 2 ==> 1
+ node_21 --> node_20 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_20 --> node_19 11 1 0.500 1 ==> 2
+ node_19 --> H007 12 1 0.333 2 ==> 1
+ node_21 --> H008 9 1 0.500 1 ==> 2
+ node_22 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 86 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #86 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 24 0 0 0
+ 19 24 2 2 2
+ 18 19 1 1 3
+ 17 18 2 2 2
+ 16 17 2 0 2
+H010 (2) 16 1 1 1
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H013 (6) 17 0 0 2
+H001 (7) 18 2 0 2
+H014 (5) 19 0 0 0
+ 22 24 0 0 1
+ 21 22 2 2 2
+H007 (3) 21 1 0 1
+ 20 21 0 0 1
+H012 (10) 20 1 1 1
+H011 (13) 20 0 0 0
+H009 (11) 22 1 0 1
+ 23 24 1 1 1
+H008 (4) 23 1 1 1
+H006 (12) 23 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------------ H010
+| |
+| | /------------ H003
+| /----------16----------15
+| | | \------------ H005
+| | |
+| /-----------17 \------------------------ H000
+| | |
+| /----------18 \------------------------------------ H013
+| | |
++----------19 \------------------------------------------------- H001
+24 |
+| \------------------------------------------------------------- H014
+|
+| /------------------------ H007
+| |
+| /----------21 /------------ H012
+| | \----------20
++-----------------------------------22 \------------ H011
+| |
+| \------------------------------------ H009
+|
+| /------------ H008
+\-----------------------------------------------------------23
+ \------------ H006
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_24 --> node_19 9 1 0.500 1 ==> 2
+ 10 1 1.000 1 ==> 2
+ node_19 --> node_18 8 1 1.000 1 ==> 2
+ node_18 --> node_17 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_17 --> node_16 6 1 0.500 1 --> 2
+ 7 1 0.500 1 --> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_18 --> H001 6 1 0.500 1 --> 2
+ 7 1 0.500 1 --> 2
+ node_22 --> node_21 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_21 --> H007 12 1 0.333 2 --> 1
+ node_20 --> H012 11 1 0.500 2 ==> 1
+ node_22 --> H009 12 1 0.333 2 --> 1
+ node_24 --> node_23 11 1 0.500 2 ==> 1
+ node_23 --> H008 9 1 0.500 1 ==> 2
+
+Tree number 87 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #87 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 24 0 0 0
+ 19 24 2 2 2
+ 18 19 1 1 3
+ 17 18 2 2 2
+ 16 17 2 0 2
+H010 (2) 16 1 1 1
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H013 (6) 17 0 0 2
+H001 (7) 18 2 0 2
+H014 (5) 19 0 0 0
+ 23 24 0 0 1
+ 21 23 2 2 2
+ 20 21 0 0 1
+H007 (3) 20 1 1 1
+H011 (13) 20 0 0 0
+H012 (10) 21 1 0 1
+ 22 23 1 0 1
+H008 (4) 22 1 1 1
+H006 (12) 22 0 0 0
+H009 (11) 24 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------------ H010
+| |
+| | /------------ H003
+| /----------16----------15
+| | | \------------ H005
+| | |
+| /-----------17 \------------------------ H000
+| | |
+| /----------18 \------------------------------------ H013
+| | |
++----------19 \------------------------------------------------- H001
+24 |
+| \------------------------------------------------------------- H014
+|
+| /------------ H007
+| /----------20
+| | \------------ H011
+| /----------21
+| | \------------------------ H012
++-----------------------------------23
+| | /------------ H008
+| \----------------------22
+| \------------ H006
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_24 --> node_19 9 1 0.500 1 ==> 2
+ 10 1 1.000 1 ==> 2
+ node_19 --> node_18 8 1 1.000 1 ==> 2
+ node_18 --> node_17 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_17 --> node_16 6 1 0.500 1 --> 2
+ 7 1 0.500 1 --> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_18 --> H001 6 1 0.500 1 --> 2
+ 7 1 0.500 1 --> 2
+ node_23 --> node_21 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_20 --> H007 12 1 0.333 2 ==> 1
+ node_21 --> H012 11 1 0.500 2 --> 1
+ node_23 --> node_22 11 1 0.500 2 --> 1
+ node_22 --> H008 9 1 0.500 1 ==> 2
+ node_24 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 88 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #88 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 24 0 0 0
+ 23 24 0 0 1
+ 20 23 1 1 1
+ 19 20 1 1 2
+ 18 19 1 1 3
+ 17 18 2 2 2
+ 16 17 2 0 2
+H010 (2) 16 1 1 1
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H013 (6) 17 0 0 2
+H001 (7) 18 2 0 2
+H014 (5) 19 0 0 0
+H008 (4) 20 1 0 1
+ 22 23 2 2 2
+ 21 22 0 0 1
+H007 (3) 21 1 1 1
+H011 (13) 21 0 0 0
+H012 (10) 22 1 0 1
+H006 (12) 23 1 0 1
+H009 (11) 24 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------ H010
+| |
+| | /--------- H003
+| /-------16-------15
+| | | \--------- H005
+| | |
+| /--------17 \------------------ H000
+| | |
+| /-------18 \--------------------------- H013
+| | |
+| /-------19 \------------------------------------- H001
+24 | |
+| /-------20 \---------------------------------------------- H014
+| | |
+| | \------------------------------------------------------- H008
+| |
+| | /--------- H007
++-------23 /-------21
+| | | \--------- H011
+| +--------------------------------------------22
+| | \------------------ H012
+| |
+| \---------------------------------------------------------------- H006
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_20 9 1 1.000 1 ==> 2
+ node_20 --> node_19 10 1 1.000 1 ==> 2
+ node_19 --> node_18 8 1 1.000 1 ==> 2
+ node_18 --> node_17 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_17 --> node_16 6 1 0.500 1 --> 2
+ 7 1 0.500 1 --> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_18 --> H001 6 1 0.500 1 --> 2
+ 7 1 0.500 1 --> 2
+ node_20 --> H008 11 1 0.333 2 --> 1
+ node_23 --> node_22 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_21 --> H007 12 1 0.333 2 ==> 1
+ node_22 --> H012 11 1 0.333 2 --> 1
+ node_23 --> H006 11 1 0.333 2 --> 1
+ node_24 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 89 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #89 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 25 0 0 0
+ 24 25 0 0 1
+ 19 24 2 1 2
+ 18 19 1 1 3
+ 17 18 2 2 2
+ 16 17 2 0 2
+H010 (2) 16 1 1 1
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H013 (6) 17 0 0 2
+H001 (7) 18 2 0 2
+H014 (5) 19 0 0 0
+ 23 24 1 1 1
+ 22 23 0 0 1
+ 21 22 2 2 2
+ 20 21 1 1 1
+H007 (3) 20 1 1 1
+H011 (13) 20 0 0 0
+H012 (10) 21 0 0 0
+H006 (12) 22 0 0 0
+H008 (4) 23 1 0 1
+H009 (11) 25 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /--------------------- H010
+| |
+| | /---------- H003
+| /--------16---------15
+| | | \---------- H005
+| | |
+| /---------17 \--------------------- H000
+| | |
+| /--------18 \------------------------------- H013
+| | |
+| /---------19 \------------------------------------------ H001
+25 | |
+| | \---------------------------------------------------- H014
+| |
+| | /---------- H007
+| | /---------20
++--------24 | \---------- H011
+| | /--------21
+| | | \--------------------- H012
+| | /---------22
+| | | \------------------------------- H006
+| \-------------------23
+| \------------------------------------------ H008
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_24 --> node_19 9 1 0.500 1 --> 2
+ 10 1 1.000 1 ==> 2
+ node_19 --> node_18 8 1 1.000 1 ==> 2
+ node_18 --> node_17 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_17 --> node_16 6 1 0.500 1 --> 2
+ 7 1 0.500 1 --> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_18 --> H001 6 1 0.500 1 --> 2
+ 7 1 0.500 1 --> 2
+ node_24 --> node_23 11 1 0.500 2 ==> 1
+ node_22 --> node_21 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_21 --> node_20 11 1 0.500 1 ==> 2
+ node_20 --> H007 12 1 0.333 2 ==> 1
+ node_23 --> H008 9 1 0.500 1 --> 2
+ node_25 --> H009 12 1 0.333 2 ==> 1
diff --git a/trunk/test/paup/unrooted_absent/association/test.tree b/trunk/test/paup/unrooted_absent/association/test.tree
new file mode 100644
index 0000000000000000000000000000000000000000..73c4d32ed4646964f37bbe6cdec375f187a25fd8
--- /dev/null
+++ b/trunk/test/paup/unrooted_absent/association/test.tree
@@ -0,0 +1,120 @@
+#NEXUS
+
+Begin trees; [Treefile saved Tue Jan 10 20:34:54 2006]
+[!
+>Data file = /home/cbardel/recherche/logiciel/altree/test/paup/non_enracine_absent/association/caco.paup
+>Heuristic search settings:
+> Optimality criterion = parsimony
+> Character-status summary:
+> Of 12 total characters:
+> All characters are of type 'unord'
+> All characters have equal weight
+> 2 characters are parsimony-uninformative
+> Number of parsimony-informative characters = 10
+> Starting tree(s) obtained via stepwise addition
+> Addition sequence: simple (reference taxon = H002)
+> Number of trees held at each step during stepwise addition = 1
+> Branch-swapping algorithm: tree-bisection-reconnection (TBR)
+> Steepest descent option not in effect
+> 'MaxTrees' setting = 2000 (will not be increased)
+> Branches collapsed (creating polytomies) if maximum branch length is zero
+> 'MulTrees' option in effect
+> Topological constraints not enforced
+> Trees are unrooted
+>
+>Heuristic search completed
+> Total number of rearrangements tried = 90406
+> Score of best tree(s) found = 20
+> Number of trees retained = 89
+> Time used = 1 sec (CPU time = 0.12 sec)
+]
+tree PAUP_1 = [&U] (H002,((((H010,H001,(H003,H005),H000),H013),H007,H012,H011),(H008,H014),H009,H006));
+tree PAUP_2 = [&U] (H002,((((((H010,(H003,H005),H000),H001),H013),H014),H008),(H007,H012,H011),H009,H006));
+tree PAUP_3 = [&U] (H002,((((H010,H001,(H003,H005),H000),H013),H007,H012,H011),((H008,H014),H006),H009));
+tree PAUP_4 = [&U] (H002,((((((H010,H001,(H003,H005),H000),H013),H007,H011),H012),(H008,H014),H006),H009));
+tree PAUP_5 = [&U] (H002,((((((H010,H001,(H003,H005),H000),H013),H007,H011),H012),((H008,H014),H006)),H009));
+tree PAUP_6 = [&U] (H002,(((((H010,H001,(H003,H005),H000),H013),(H007,H012,H011)),(H008,H014)),H009,H006));
+tree PAUP_7 = [&U] (H002,(((((H010,H001,(H003,H005),H000),H013),(H007,H012,H011)),H008,H014),H009,H006));
+tree PAUP_8 = [&U] (H002,(((((((H010,H001,(H003,H005),H000),H013),(H007,H012,H011)),H014),H008),H006),H009));
+tree PAUP_9 = [&U] (H002,((((((H010,H001,(H003,H005),H000),H013),H012,H011),H007),H009),((H008,H014),H006)));
+tree PAUP_10 = [&U] (H002,((((H010,H001,(H003,H005),H000),H013),H007,H012,H011),((H008,H006),H014),H009));
+tree PAUP_11 = [&U] (H002,(((((((H010,H001,(H003,H005),H000),H013),H007,H011),H012),H006),(H008,H014)),H009));
+tree PAUP_12 = [&U] (H002,((((H010,H001,(H003,H005),H000),H013),H007,H012,H011),(H008,H006),H014,H009));
+tree PAUP_13 = [&U] (H002,((((((H010,(H003,H005),H000),H013),H001),H014),H008),(H007,H012,H011),H009,H006));
+tree PAUP_14 = [&U] (H002,(((((H010,H013,(H003,H005),H000),H001),H014),H008),(H007,H012,H011),H009,H006));
+tree PAUP_15 = [&U] (H002,(((((H010,H001,(H003,H005),H000),H013),H014),H008),(H007,H012,H011),H009,H006));
+tree PAUP_16 = [&U] (H002,(((((H010,(H003,H005),H000),H001),H013),H014),(H007,H012,H011),(H008,H006),H009));
+tree PAUP_17 = [&U] (H002,((((((H010,(H003,H005),H000),H001),H013),H014),H008),(((H007,H011),H012),H006),H009));
+tree PAUP_18 = [&U] (H002,((((((H010,H001,(H003,H005),H000),H013),(H007,H012,H011)),H014),H008),H009,H006));
+tree PAUP_19 = [&U] (H002,((((((H010,(H003,H005),H000),H001),H013),H014),H008),((H007,(H012,H011)),H009),H006));
+tree PAUP_20 = [&U] (H002,(((((((H010,(H003,H005),H000),H001),H013),H014),H008),((H007,H011),H012),H006),H009));
+tree PAUP_21 = [&U] (H002,(((((((H010,(H003,H005),H000),H001),H013),H014),H008),H006),(H007,H012,H011),H009));
+tree PAUP_22 = [&U] (H002,((((((H010,(H003,H005),H000),H001),H013),H014),(H008,H006)),(H007,H012,H011),H009));
+tree PAUP_23 = [&U] (H002,((((((((H010,(H003,H005),H000),H001),H013),H014),H008),H006),((H007,H011),H012)),H009));
+tree PAUP_24 = [&U] (H002,((((((H010,H001,(H003,H005),H000),H013),H014),H008),H006),(H007,H012,H011),H009));
+tree PAUP_25 = [&U] (H002,(((((H010,H001,(H003,H005),H000),H013),(H007,H012,H011)),((H008,H006),H014)),H009));
+tree PAUP_26 = [&U] (H002,(((((H010,H001,(H003,H005),H000),H013),(H007,H012,H011)),H014),(H008,H006),H009));
+tree PAUP_27 = [&U] (H002,(((((H010,H001,(H003,H005),H000),H013),H014),(H007,H012,H011)),(H008,H006),H009));
+tree PAUP_28 = [&U] (H002,((((((H010,H013,(H003,H005),H000),H001),H014),H008),H006),(H007,H012,H011),H009));
+tree PAUP_29 = [&U] (H002,((((((((H010,H001,(H003,H005),H000),H013),H007,H011),H012),H006),H008),H014),H009));
+tree PAUP_30 = [&U] (H002,((((((H010,H001,(H003,H005),H000),H013),H007,H011),H012),H006),(H008,H014),H009));
+tree PAUP_31 = [&U] (H002,((((((H010,H001,(H003,H005),H000),H013),H007,H011),H012),(H008,H006)),H014,H009));
+tree PAUP_32 = [&U] (H002,(((((((H010,H001,(H003,H005),H000),H013),H014),H007,H011),H012),(H008,H006)),H009));
+tree PAUP_33 = [&U] (H002,(((((((H010,H001,(H003,H005),H000),H013),H014),H008),H006),((H007,H011),H012)),H009));
+tree PAUP_34 = [&U] (H002,(((((((H010,H013,(H003,H005),H000),H001),H014),H008),H006),((H007,H011),H012)),H009));
+tree PAUP_35 = [&U] (H002,((((((H010,H001,(H003,H005),H000),H013),H012,H011),H007),H009),(H008,H014),H006));
+tree PAUP_36 = [&U] (H002,(((((H010,H001,(H003,H005),H000),H013),(H007,H012,H011)),(H008,H006),H014),H009));
+tree PAUP_37 = [&U] (H002,(((((H010,H001,(H003,H005),H000),H013),H014),H007,H012,H011),(H008,H006),H009));
+tree PAUP_38 = [&U] (H002,(((((((H010,H001,(H003,H005),H000),H013),H014),H007,H011),H012),H008,H006),H009));
+tree PAUP_39 = [&U] (H002,(((((((H010,H001,(H003,H005),H000),H013),H014),H012,H011),H007),H009),(H008,H006)));
+tree PAUP_40 = [&U] (H002,((((((H010,H001,(H003,H005),H000),H013),H014),H008),((H007,H011),H012),H006),H009));
+tree PAUP_41 = [&U] (H002,((((((H010,H001,(H003,H005),H000),H013),H014),H008),H006),((H007,(H012,H011)),H009)));
+tree PAUP_42 = [&U] (H002,((((((H010,H001,(H003,H005),H000),H013),H014),H008),(((H007,H011),H012),H006)),H009));
+tree PAUP_43 = [&U] (H002,((((((H010,H001,(H003,H005),H000),H013),(H007,H012,H011)),H014),(H008,H006)),H009));
+tree PAUP_44 = [&U] (H002,((((((H010,H001,(H003,H005),H000),H013),H012,H011),H007),H009),(H008,H006),H014));
+tree PAUP_45 = [&U] (H002,((((((H010,H001,(H003,H005),H000),H013),H012,H011),H007),H009),((H008,H006),H014)));
+tree PAUP_46 = [&U] (H002,((((((H010,H013,(H003,H005),H000),H001),H014),H008),H006),((H007,(H012,H011)),H009)));
+tree PAUP_47 = [&U] (H002,((((((H010,H001,(H003,H005),H000),H013),H007,H011),H012),H008,H006),H014,H009));
+tree PAUP_48 = [&U] (H002,(((((H010,H001,(H003,H005),H000),H013),H014),(H008,H006)),(H007,H012,H011),H009));
+tree PAUP_49 = [&U] (H002,(((((H010,H013,(H003,H005),H000),H001),H014),(H008,H006)),(H007,H012,H011),H009));
+tree PAUP_50 = [&U] (H002,((((((H010,H013,(H003,H005),H000),H001),H014),H008),(((H007,H011),H012),H006)),H009));
+tree PAUP_51 = [&U] (H002,((((((H010,(H003,H005),H000),H001),H013),H014),(H007,H012,H011)),(H008,H006),H009));
+tree PAUP_52 = [&U] (H002,(((((H010,(H003,H005),H000),H013),H001),H014),(H007,H012,H011),(H008,H006),H009));
+tree PAUP_53 = [&U] (H002,(((((((H010,(H003,H005),H000),H013),H001),H014),H008),H006),(H007,H012,H011),H009));
+tree PAUP_54 = [&U] (H002,(((((((H010,(H003,H005),H000),H013),H001),H014),H008),H006),((H007,(H012,H011)),H009)));
+tree PAUP_55 = [&U] (H002,((((((H010,(H003,H005),H000),H013),H001),H014),(H008,H006)),(H007,H012,H011),H009));
+tree PAUP_56 = [&U] (H002,((((((H010,(H003,H005),H000),H013),H001),H014),H008),((H007,(H012,H011)),H009),H006));
+tree PAUP_57 = [&U] (H002,((((((H010,(H003,H005),H000),H013),H001),H014),H008),(((H007,H011),H012),H006),H009));
+tree PAUP_58 = [&U] (H002,((((H010,H013,(H003,H005),H000),H001),H014),(H007,H012,H011),(H008,H006),H009));
+tree PAUP_59 = [&U] (H002,(((((H010,H013,(H003,H005),H000),H001),H014),H008),((H007,(H012,H011)),H009),H006));
+tree PAUP_60 = [&U] (H002,(((((H010,H013,(H003,H005),H000),H001),H014),H008),(((H007,H011),H012),H006),H009));
+tree PAUP_61 = [&U] (H002,((((H010,H001,(H003,H005),H000),H013),H014),(H007,H012,H011),(H008,H006),H009));
+tree PAUP_62 = [&U] (H002,(((((H010,H001,(H003,H005),H000),H013),H014),H008),((H007,(H012,H011)),H009),H006));
+tree PAUP_63 = [&U] (H002,(((((H010,H001,(H003,H005),H000),H013),H014),H008),(((H007,H011),H012),H006),H009));
+tree PAUP_64 = [&U] (H002,((((((H010,(H003,H005),H000),H001),H013),H014),(H008,H006)),((H007,(H012,H011)),H009)));
+tree PAUP_65 = [&U] (H002,(((((H010,(H003,H005),H000),H001),H013),H014),((H007,(H012,H011)),H009),(H008,H006)));
+tree PAUP_66 = [&U] (H002,(((((H010,(H003,H005),H000),H001),H013),H014),(((H007,H011),H012),H008,H006),H009));
+tree PAUP_67 = [&U] (H002,(((((H010,(H003,H005),H000),H001),H013),H014),(((H007,H011),H012),(H008,H006)),H009));
+tree PAUP_68 = [&U] (H002,(((((((H010,(H003,H005),H000),H001),H013),H014),H008),(((H007,H011),H012),H006)),H009));
+tree PAUP_69 = [&U] (H002,(((((((H010,(H003,H005),H000),H001),H013),H014),H008),H006),((H007,(H012,H011)),H009)));
+tree PAUP_70 = [&U] (H002,((((((H010,(H003,H005),H000),H001),H013),H014),((((H007,H011),H012),H006),H008)),H009));
+tree PAUP_71 = [&U] (H002,(((((((H010,(H003,H005),H000),H013),H001),H014),H008),(((H007,H011),H012),H006)),H009));
+tree PAUP_72 = [&U] (H002,((((((((H010,(H003,H005),H000),H013),H001),H014),H008),H006),((H007,H011),H012)),H009));
+tree PAUP_73 = [&U] (H002,((((H010,H001,(H003,H005),H000),H013),H014),((H007,(H012,H011)),H009),(H008,H006)));
+tree PAUP_74 = [&U] (H002,((((H010,H001,(H003,H005),H000),H013),H014),(((H007,H011),H012),(H008,H006)),H009));
+tree PAUP_75 = [&U] (H002,((((H010,H001,(H003,H005),H000),H013),H014),(((H007,H011),H012),H008,H006),H009));
+tree PAUP_76 = [&U] (H002,(((((H010,H001,(H003,H005),H000),H013),H014),((((H007,H011),H012),H006),H008)),H009));
+tree PAUP_77 = [&U] (H002,(((((H010,H001,(H003,H005),H000),H013),H014),(H008,H006)),((H007,(H012,H011)),H009)));
+tree PAUP_78 = [&U] (H002,(((((H010,H013,(H003,H005),H000),H001),H014),(H008,H006)),((H007,(H012,H011)),H009)));
+tree PAUP_79 = [&U] (H002,((((((H010,H013,(H003,H005),H000),H001),H014),H008),((H007,H011),H012),H006),H009));
+tree PAUP_80 = [&U] (H002,(((((H010,H013,(H003,H005),H000),H001),H014),((((H007,H011),H012),H006),H008)),H009));
+tree PAUP_81 = [&U] (H002,((((H010,H013,(H003,H005),H000),H001),H014),(((H007,H011),H012),(H008,H006)),H009));
+tree PAUP_82 = [&U] (H002,((((((H010,(H003,H005),H000),H013),H001),H014),(H008,H006)),((H007,(H012,H011)),H009)));
+tree PAUP_83 = [&U] (H002,((((H010,H013,(H003,H005),H000),H001),H014),((H007,(H012,H011)),H009),(H008,H006)));
+tree PAUP_84 = [&U] (H002,(((((H010,(H003,H005),H000),H013),H001),H014),(((H007,H011),H012),H008,H006),H009));
+tree PAUP_85 = [&U] (H002,((((H010,H013,(H003,H005),H000),H001),H014),(((H007,H011),H012),H008,H006),H009));
+tree PAUP_86 = [&U] (H002,(((((H010,(H003,H005),H000),H013),H001),H014),((H007,(H012,H011)),H009),(H008,H006)));
+tree PAUP_87 = [&U] (H002,(((((H010,(H003,H005),H000),H013),H001),H014),(((H007,H011),H012),(H008,H006)),H009));
+tree PAUP_88 = [&U] (H002,(((((((H010,(H003,H005),H000),H013),H001),H014),H008),((H007,H011),H012),H006),H009));
+tree PAUP_89 = [&U] (H002,((((((H010,(H003,H005),H000),H013),H001),H014),((((H007,H011),H012),H006),H008)),H009));
+End;
diff --git a/trunk/test/paup/unrooted_absent/localisation/caco.loc b/trunk/test/paup/unrooted_absent/localisation/caco.loc
new file mode 100644
index 0000000000000000000000000000000000000000..b6c02601f3bcc7577c86b7ebd1f5cb28c36263d9
--- /dev/null
+++ b/trunk/test/paup/unrooted_absent/localisation/caco.loc
@@ -0,0 +1,27 @@
+Localisation method using S-character
+
+Results:
+site number 7 sens 1-->2 V_i = 1.69733684958301
+site number 6 sens 1-->2 V_i = 1.69733684958301
+site number 12 sens 1-->2 V_i = 0.445435403187374
+site number 2 sens 1-->2 V_i = 0
+site number 8 sens 1-->2 V_i = 0
+site number 1 sens 1-->2 V_i = 0
+site number 3 sens 2-->1 V_i = 0
+site number 4 sens 2-->1 V_i = 0
+site number 10 sens 1-->2 V_i = 0
+site number 9 sens 1-->2 V_i = 0
+site number 5 sens 2-->1 V_i = 0
+site number 12 sens 2-->1 V_i = 0
+site number 6 sens 2-->1 V_i = -0.462910049886276
+site number 11 sens 2-->1 V_i = -0.462910049886276
+site number 11 sens 1-->2 V_i = -0.462910049886276
+site number 3 sens 1-->2 V_i = -0.462910049886276
+site number 7 sens 2-->1 V_i = -0.462910049886276
+site number 8 sens 2-->1 V_i = -0.462910049886276
+site number 10 sens 2-->1 V_i = -0.462910049886276
+site number 4 sens 1-->2 V_i = -0.462910049886276
+site number 5 sens 1-->2 V_i = -0.462910049886276
+site number 1 sens 2-->1 V_i = -0.654653670707977
+site number 9 sens 2-->1 V_i = -0.654653670707977
+site number 2 sens 2-->1 V_i = -0.654653670707977
diff --git a/trunk/test/paup/unrooted_absent/localisation/caco.paup b/trunk/test/paup/unrooted_absent/localisation/caco.paup
new file mode 100644
index 0000000000000000000000000000000000000000..6b027593d20bac485a7be674c5698e17ca7df93e
--- /dev/null
+++ b/trunk/test/paup/unrooted_absent/localisation/caco.paup
@@ -0,0 +1,35 @@
+#Nexus
+Begin data;
+dimension ntax=13 nchar=12;
+format symbols="0123456789" missing=?;
+matrix
+H002 112221111122
+H010 222212222222
+H007 222221111121
+H008 112221112112
+H014 112221112222
+H013 222221122222
+H001 112222222222
+H003 221122222222
+H005 221222222221
+H012 222221111112
+H009 112221111121
+H006 112221111112
+H011 222221111122
+[H000 222222222222]
+;
+end;
+begin assumptions;
+end;
+begin paup;
+set nowarnreset autoclose maxtrees = 2000 increase= no [- Auto AutoInc = 100] monitor = no taxlabels = full warnroot=no opt=deltran [- acctran];
+hsearch;
+savetrees from=1 to=1000 file= test.tree root=no format=altnexus;
+cleartrees nowarn=yes;
+gettrees rooted=no file=test.tree;
+log file = test.res.log replace= yes [- no];
+describetrees all /plot=cladogram [- phylogram] brlens=yes apolist=yes;
+log stop;
+end;
+quit;
+[WARNING, this file is designed for bi-allelic data. If it is not the case, you may have to modify this input file, for example by specifying the ordered option in the typeset command in the assumption block]
diff --git a/trunk/test/paup/unrooted_absent/localisation/et_caco.paup b/trunk/test/paup/unrooted_absent/localisation/et_caco.paup
new file mode 100644
index 0000000000000000000000000000000000000000..194bd3f45710eddacfaf85fc725a73b13dd876d9
--- /dev/null
+++ b/trunk/test/paup/unrooted_absent/localisation/et_caco.paup
@@ -0,0 +1,36 @@
+#Nexus
+Begin data;
+dimension ntax=13 nchar=13;
+format symbols="0123456789CG" missing=?;
+matrix
+H002 112221111122?
+H010 222212222222?
+H007 2222211111210
+H008 1122211121121
+H014 112221112222?
+H013 2222211222220
+H001 112222222222?
+H003 221122222222?
+H005 221222222221?
+H012 2222211111120
+H009 1122211111211
+H006 1122211111121
+H011 2222211111221
+;
+end;
+begin assumptions;
+end;
+begin paup;
+exclude 13;
+set nowarnreset autoclose maxtrees = 2000 increase= no [- Auto AutoInc = 100] monitor = no taxlabels = full warnroot=no opt=deltran [- acctran];
+hsearch;
+savetrees from=1 to=1000 file= test.tree root=no format=altnexus;
+cleartrees nowarn=yes;
+gettrees rooted=no file=test.tree;
+log file = test.res.log replace= yes [- no];
+include 13;
+describetrees all /plot=cladogram [- phylogram] brlens=yes apolist=yes;
+log stop;
+end;
+quit;
+[WARNING, this file is designed for bi-allelic data. If it is not the case, you may have to modify this input file, for example by specifying the ordered option in the typeset command in the assumption block]
diff --git a/trunk/test/paup/unrooted_absent/localisation/nb_cas_control.txt b/trunk/test/paup/unrooted_absent/localisation/nb_cas_control.txt
new file mode 100644
index 0000000000000000000000000000000000000000..ec9b7d90b0f6fc3983260c38f77f3bd42b037c09
--- /dev/null
+++ b/trunk/test/paup/unrooted_absent/localisation/nb_cas_control.txt
@@ -0,0 +1,13 @@
+H002 m008 c006
+H010 m007 c005
+H007 m007 c013
+H008 m009 c002
+H014 m004 c002
+H013 m002 c004
+H001 m011 c009
+H003 m005 c006
+H005 m007 c007
+H012 m001 c004
+H009 m008 c002
+H006 m028 c013
+H011 m005 c001
diff --git a/trunk/test/paup/unrooted_absent/localisation/run-prog b/trunk/test/paup/unrooted_absent/localisation/run-prog
new file mode 100755
index 0000000000000000000000000000000000000000..9100ed3f4597f141293cbc6cba143ebf2b2579da
--- /dev/null
+++ b/trunk/test/paup/unrooted_absent/localisation/run-prog
@@ -0,0 +1,14 @@
+#!/bin/sh -x
+
+# To obtain the paup input file containing the character S
+../../../../altree-add-S -i caco.paup -j nb_cas_control.txt \
+ -o et_caco.paup -e 1 -t SNP -p 0.58
+
+# To run paup
+paup et_caco.paup
+
+# To perform the localisation analysis on the 89 equiparsimonious trees
+../../../../altree -i test.res.log \
+-j nb_cas_control.txt -t SNP -p paup --tree-to-analyse 89 \
+--s-site-number 13 --s-site-characters "0->1" \
+--co-evo double -l -o caco.loc
diff --git a/trunk/test/paup/unrooted_absent/localisation/test.res.log b/trunk/test/paup/unrooted_absent/localisation/test.res.log
new file mode 100644
index 0000000000000000000000000000000000000000..86f3ce9d782f3893818313990238c3e9e6db1608
--- /dev/null
+++ b/trunk/test/paup/unrooted_absent/localisation/test.res.log
@@ -0,0 +1,8362 @@
+
+P A U P *
+Portable version 4.0b10 for Unix
+Fri Jan 13 11:19:32 2006
+
+ -----------------------------NOTICE-----------------------------
+ This is a beta-test version. Please report any crashes,
+ apparent calculation errors, or other anomalous results.
+ There are no restrictions on publication of results obtained
+ with this version, but you should check the WWW site
+ frequently for bug announcements and/or updated versions.
+ See the README file on the distribution media for details.
+ ----------------------------------------------------------------
+
+Character-exclusion status changed:
+ 1 character re-included
+ Total number of characters now excluded = 0
+ Number of included characters = 13
+
+Tree description:
+
+ Unrooted tree(s) rooted using outgroup method
+ Optimality criterion = parsimony
+ Character-status summary:
+ Of 13 total characters:
+ All characters are of type 'unord'
+ All characters have equal weight
+ 2 characters are parsimony-uninformative
+ Number of parsimony-informative characters = 11
+ Character-state optimization: Delayed transformation (DELTRAN)
+
+Tree number 1 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #1 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 19 0 0 0
+ 17 19 3 3 3
+ 16 17 3 3 3
+ 15 16 2 2 2
+H010 (2) 15 1 1 1
+H001 (7) 15 2 2 2
+ 14 15 1 1 1
+H003 (8) 14 1 1 1
+H005 (9) 14 1 1 1
+H013 (6) 16 0 0 0
+H007 (3) 17 1 1 1
+H012 (10) 17 1 1 1
+H011 (13) 17 1 1 1
+ 18 19 1 1 1
+H008 (4) 18 1 1 1
+H014 (5) 18 1 1 1
+H009 (11) 19 1 1 1
+H006 (12) 19 1 1 1
+-------------------------------------------------------------------------
+Sum 22
+
+Tree length = 22
+Consistency index (CI) = 0.5909
+Homoplasy index (HI) = 0.4091
+CI excluding uninformative characters = 0.5500
+HI excluding uninformative characters = 0.4500
+Retention index (RI) = 0.7568
+Rescaled consistency index (RC) = 0.4472
+
+/------------------------------------------------------------------------- H002
+|
+| /----------------------------- H010
+| |
+| +----------------------------- H001
+| /-------------15
+| | | /--------------- H003
+| | \------------14
+| /------------16 \--------------- H005
+| | |
+| | \-------------------------------------------- H013
+| |
+19------------17---------------------------------------------------------- H007
+| |
+| +---------------------------------------------------------- H012
+| |
+| \---------------------------------------------------------- H011
+|
+| /--------------- H008
++--------------------------------------------------------18
+| \--------------- H014
+|
++------------------------------------------------------------------------- H009
+|
+\------------------------------------------------------------------------- H006
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_19 --> node_17 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ 13 1 0.500 1 ==> 0
+ node_17 --> node_16 8 1 1.000 1 ==> 2
+ 9 1 0.500 1 ==> 2
+ 10 1 0.500 1 ==> 2
+ node_16 --> node_15 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_15 --> H010 5 1 1.000 2 ==> 1
+ node_15 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_15 --> node_14 3 1 1.000 2 ==> 1
+ node_14 --> H003 4 1 1.000 2 ==> 1
+ node_14 --> H005 12 1 0.333 2 ==> 1
+ node_17 --> H007 12 1 0.333 2 ==> 1
+ node_17 --> H012 11 1 0.333 2 ==> 1
+ node_17 --> H011 13 1 0.500 0 ==> 1
+ node_19 --> node_18 9 1 0.500 1 ==> 2
+ node_18 --> H008 11 1 0.333 2 ==> 1
+ node_18 --> H014 10 1 0.500 1 ==> 2
+ node_19 --> H009 12 1 0.333 2 ==> 1
+ node_19 --> H006 11 1 0.333 2 ==> 1
+
+Tree number 2 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #2 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 21 0 0 0
+ 19 21 1 1 1
+ 18 19 1 1 2
+ 17 18 1 1 4
+ 16 17 2 2 2
+ 15 16 2 0 2
+H010 (2) 15 1 1 1
+ 14 15 1 1 1
+H003 (8) 14 1 1 1
+H005 (9) 14 1 1 1
+H001 (7) 16 0 0 2
+H013 (6) 17 3 0 3
+H014 (5) 18 0 0 0
+H008 (4) 19 1 1 1
+ 20 21 2 2 3
+H007 (3) 20 2 1 2
+H012 (10) 20 2 1 2
+H011 (13) 20 0 0 1
+H009 (11) 21 1 1 1
+H006 (12) 21 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7297
+Rescaled consistency index (RC) = 0.4125
+
+/------------------------------------------------------------------------- H002
+|
+| /--------------------- H010
+| |
+| /--------15 /---------- H003
+| | \---------14
+| /---------16 \---------- H005
+| | |
+| /--------17 \------------------------------- H001
+| | |
+| /---------18 \------------------------------------------ H013
+| | |
+21-------19 \---------------------------------------------------- H014
+| |
+| \--------------------------------------------------------------- H008
+|
+| /---------- H007
+| |
++-------------------------------------------------------------20---------- H012
+| |
+| \---------- H011
+|
++------------------------------------------------------------------------- H009
+|
+\------------------------------------------------------------------------- H006
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_19 9 1 1.000 1 ==> 2
+ node_19 --> node_18 10 1 1.000 1 ==> 2
+ node_18 --> node_17 8 1 1.000 1 ==> 2
+ node_17 --> node_16 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_16 --> node_15 1 1 0.333 1 --> 2
+ 2 1 0.333 1 --> 2
+ node_15 --> H010 5 1 1.000 2 ==> 1
+ node_15 --> node_14 3 1 1.000 2 ==> 1
+ node_14 --> H003 4 1 1.000 2 ==> 1
+ node_14 --> H005 12 1 0.333 2 ==> 1
+ node_17 --> H013 1 1 0.333 1 --> 2
+ 2 1 0.333 1 --> 2
+ 13 1 0.333 1 --> 0
+ node_19 --> H008 11 1 0.333 2 ==> 1
+ node_21 --> node_20 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_20 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_20 --> H012 11 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_21 --> H009 12 1 0.333 2 ==> 1
+ node_21 --> H006 11 1 0.333 2 ==> 1
+
+Tree number 3 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #3 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 20 0 0 0
+ 17 20 3 3 3
+ 16 17 3 3 3
+ 15 16 2 2 2
+H010 (2) 15 1 1 1
+H001 (7) 15 2 2 2
+ 14 15 1 1 1
+H003 (8) 14 1 1 1
+H005 (9) 14 1 1 1
+H013 (6) 16 0 0 0
+H007 (3) 17 1 1 1
+H012 (10) 17 1 1 1
+H011 (13) 17 1 1 1
+ 19 20 0 0 1
+ 18 19 1 1 1
+H008 (4) 18 1 0 1
+H014 (5) 18 1 1 2
+H006 (12) 19 1 0 1
+H009 (11) 20 1 1 1
+-------------------------------------------------------------------------
+Sum 22
+
+Tree length = 22
+Consistency index (CI) = 0.5909
+Homoplasy index (HI) = 0.4091
+CI excluding uninformative characters = 0.5500
+HI excluding uninformative characters = 0.4500
+Retention index (RI) = 0.7568
+Rescaled consistency index (RC) = 0.4472
+
+/------------------------------------------------------------------------- H002
+|
+| /----------------------------- H010
+| |
+| +----------------------------- H001
+| /-------------15
+| | | /--------------- H003
+| | \------------14
+| /------------16 \--------------- H005
+| | |
+| | \-------------------------------------------- H013
+| |
+20------------17---------------------------------------------------------- H007
+| |
+| +---------------------------------------------------------- H012
+| |
+| \---------------------------------------------------------- H011
+|
+| /--------------- H008
+| /------------18
+| | \--------------- H014
++------------------------------------------19
+| \----------------------------- H006
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_20 --> node_17 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ 13 1 0.500 1 ==> 0
+ node_17 --> node_16 8 1 1.000 1 ==> 2
+ 9 1 0.500 1 ==> 2
+ 10 1 0.500 1 ==> 2
+ node_16 --> node_15 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_15 --> H010 5 1 1.000 2 ==> 1
+ node_15 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_15 --> node_14 3 1 1.000 2 ==> 1
+ node_14 --> H003 4 1 1.000 2 ==> 1
+ node_14 --> H005 12 1 0.333 2 ==> 1
+ node_17 --> H007 12 1 0.333 2 ==> 1
+ node_17 --> H012 11 1 0.333 2 ==> 1
+ node_17 --> H011 13 1 0.500 0 ==> 1
+ node_19 --> node_18 9 1 0.500 1 ==> 2
+ node_18 --> H008 11 1 0.333 2 --> 1
+ node_18 --> H014 10 1 0.500 1 ==> 2
+ node_19 --> H006 11 1 0.333 2 --> 1
+ node_20 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 4 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #4 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 21 0 0 0
+ 20 21 0 0 1
+ 18 20 3 3 3
+ 17 18 0 0 1
+ 16 17 3 3 3
+ 15 16 2 2 2
+H010 (2) 15 1 1 1
+H001 (7) 15 2 2 2
+ 14 15 1 1 1
+H003 (8) 14 1 1 1
+H005 (9) 14 1 1 1
+H013 (6) 16 0 0 0
+H007 (3) 17 1 1 1
+H011 (13) 17 1 1 1
+H012 (10) 18 1 0 1
+ 19 20 1 1 1
+H008 (4) 19 1 0 1
+H014 (5) 19 1 1 2
+H006 (12) 20 1 0 1
+H009 (11) 21 1 1 1
+-------------------------------------------------------------------------
+Sum 22
+
+Tree length = 22
+Consistency index (CI) = 0.5909
+Homoplasy index (HI) = 0.4091
+CI excluding uninformative characters = 0.5500
+HI excluding uninformative characters = 0.4500
+Retention index (RI) = 0.7568
+Rescaled consistency index (RC) = 0.4472
+
+/------------------------------------------------------------------------- H002
+|
+| /--------------------- H010
+| |
+| +--------------------- H001
+| /--------15
+| | | /---------- H003
+| | \---------14
+| /---------16 \---------- H005
+| | |
+| | \------------------------------- H013
+| /--------17
+21 | +------------------------------------------ H007
+| | |
+| /---------18 \------------------------------------------ H011
+| | |
+| | \---------------------------------------------------- H012
+| |
++--------20 /---------- H008
+| +---------------------------------------------------19
+| | \---------- H014
+| |
+| \--------------------------------------------------------------- H006
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_20 --> node_18 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ 13 1 0.500 1 ==> 0
+ node_17 --> node_16 8 1 1.000 1 ==> 2
+ 9 1 0.500 1 ==> 2
+ 10 1 0.500 1 ==> 2
+ node_16 --> node_15 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_15 --> H010 5 1 1.000 2 ==> 1
+ node_15 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_15 --> node_14 3 1 1.000 2 ==> 1
+ node_14 --> H003 4 1 1.000 2 ==> 1
+ node_14 --> H005 12 1 0.333 2 ==> 1
+ node_17 --> H007 12 1 0.333 2 ==> 1
+ node_17 --> H011 13 1 0.500 0 ==> 1
+ node_18 --> H012 11 1 0.333 2 --> 1
+ node_20 --> node_19 9 1 0.500 1 ==> 2
+ node_19 --> H008 11 1 0.333 2 --> 1
+ node_19 --> H014 10 1 0.500 1 ==> 2
+ node_20 --> H006 11 1 0.333 2 --> 1
+ node_21 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 5 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #5 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 22 0 0 0
+ 21 22 0 0 1
+ 18 21 3 3 3
+ 17 18 0 0 1
+ 16 17 3 3 3
+ 15 16 2 2 2
+H010 (2) 15 1 1 1
+H001 (7) 15 2 2 2
+ 14 15 1 1 1
+H003 (8) 14 1 1 1
+H005 (9) 14 1 1 1
+H013 (6) 16 0 0 0
+H007 (3) 17 1 1 1
+H011 (13) 17 1 1 1
+H012 (10) 18 1 0 1
+ 20 21 0 0 1
+ 19 20 1 1 1
+H008 (4) 19 1 0 1
+H014 (5) 19 1 1 2
+H006 (12) 20 1 0 1
+H009 (11) 22 1 1 1
+-------------------------------------------------------------------------
+Sum 22
+
+Tree length = 22
+Consistency index (CI) = 0.5909
+Homoplasy index (HI) = 0.4091
+CI excluding uninformative characters = 0.5500
+HI excluding uninformative characters = 0.4500
+Retention index (RI) = 0.7568
+Rescaled consistency index (RC) = 0.4472
+
+/------------------------------------------------------------------------- H002
+|
+| /--------------------- H010
+| |
+| +--------------------- H001
+| /--------15
+| | | /---------- H003
+| | \---------14
+| /---------16 \---------- H005
+| | |
+| | \------------------------------- H013
+| /--------17
+22 | +------------------------------------------ H007
+| | |
+| /---------18 \------------------------------------------ H011
+| | |
+| | \---------------------------------------------------- H012
+| |
++--------21 /---------- H008
+| | /---------19
+| | | \---------- H014
+| \----------------------------------------20
+| \--------------------- H006
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_18 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ 13 1 0.500 1 ==> 0
+ node_17 --> node_16 8 1 1.000 1 ==> 2
+ 9 1 0.500 1 ==> 2
+ 10 1 0.500 1 ==> 2
+ node_16 --> node_15 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_15 --> H010 5 1 1.000 2 ==> 1
+ node_15 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_15 --> node_14 3 1 1.000 2 ==> 1
+ node_14 --> H003 4 1 1.000 2 ==> 1
+ node_14 --> H005 12 1 0.333 2 ==> 1
+ node_17 --> H007 12 1 0.333 2 ==> 1
+ node_17 --> H011 13 1 0.500 0 ==> 1
+ node_18 --> H012 11 1 0.333 2 --> 1
+ node_20 --> node_19 9 1 0.500 1 ==> 2
+ node_19 --> H008 11 1 0.333 2 --> 1
+ node_19 --> H014 10 1 0.500 1 ==> 2
+ node_20 --> H006 11 1 0.333 2 --> 1
+ node_22 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 6 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #6 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 21 0 0 0
+ 20 21 0 0 1
+ 18 20 3 3 3
+ 16 18 3 2 3
+ 15 16 2 2 2
+H010 (2) 15 1 1 1
+H001 (7) 15 2 2 2
+ 14 15 1 1 1
+H003 (8) 14 1 1 1
+H005 (9) 14 1 1 1
+H013 (6) 16 0 0 0
+ 17 18 0 0 1
+H007 (3) 17 1 1 1
+H012 (10) 17 1 1 1
+H011 (13) 17 1 1 1
+ 19 20 1 0 1
+H008 (4) 19 1 1 1
+H014 (5) 19 1 1 1
+H009 (11) 21 1 1 1
+H006 (12) 21 1 1 1
+-------------------------------------------------------------------------
+Sum 22
+
+Tree length = 22
+Consistency index (CI) = 0.5909
+Homoplasy index (HI) = 0.4091
+CI excluding uninformative characters = 0.5500
+HI excluding uninformative characters = 0.4500
+Retention index (RI) = 0.7568
+Rescaled consistency index (RC) = 0.4472
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------------ H010
+| |
+| +------------------------ H001
+| /----------15
+| | | /------------ H003
+| | \----------14
+| /-----------16 \------------ H005
+| | |
+| | \------------------------------------ H013
+| /----------18
+21 | | /------------ H007
+| | | |
+| | \-----------------------------------17------------ H012
++----------20 |
+| | \------------ H011
+| |
+| | /------------ H008
+| \-----------------------------------------------19
+| \------------ H014
+|
++------------------------------------------------------------------------- H009
+|
+\------------------------------------------------------------------------- H006
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_20 --> node_18 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ 13 1 0.500 1 ==> 0
+ node_18 --> node_16 8 1 1.000 1 ==> 2
+ 9 1 0.500 1 --> 2
+ 10 1 0.500 1 ==> 2
+ node_16 --> node_15 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_15 --> H010 5 1 1.000 2 ==> 1
+ node_15 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_15 --> node_14 3 1 1.000 2 ==> 1
+ node_14 --> H003 4 1 1.000 2 ==> 1
+ node_14 --> H005 12 1 0.333 2 ==> 1
+ node_17 --> H007 12 1 0.333 2 ==> 1
+ node_17 --> H012 11 1 0.333 2 ==> 1
+ node_17 --> H011 13 1 0.500 0 ==> 1
+ node_20 --> node_19 9 1 0.500 1 --> 2
+ node_19 --> H008 11 1 0.333 2 ==> 1
+ node_19 --> H014 10 1 0.500 1 ==> 2
+ node_21 --> H009 12 1 0.333 2 ==> 1
+ node_21 --> H006 11 1 0.333 2 ==> 1
+
+Tree number 7 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #7 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 20 0 0 0
+ 19 20 1 1 1
+ 18 19 3 3 3
+ 16 18 2 2 2
+ 15 16 2 2 2
+H010 (2) 15 1 1 1
+H001 (7) 15 2 2 2
+ 14 15 1 1 1
+H003 (8) 14 1 1 1
+H005 (9) 14 1 1 1
+H013 (6) 16 0 0 0
+ 17 18 1 1 1
+H007 (3) 17 1 1 1
+H012 (10) 17 1 1 1
+H011 (13) 17 1 1 1
+H008 (4) 19 1 1 1
+H014 (5) 19 1 1 1
+H009 (11) 20 1 1 1
+H006 (12) 20 1 1 1
+-------------------------------------------------------------------------
+Sum 22
+
+Tree length = 22
+Consistency index (CI) = 0.5909
+Homoplasy index (HI) = 0.4091
+CI excluding uninformative characters = 0.5500
+HI excluding uninformative characters = 0.4500
+Retention index (RI) = 0.7568
+Rescaled consistency index (RC) = 0.4472
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------------ H010
+| |
+| +------------------------ H001
+| /----------15
+| | | /------------ H003
+| | \----------14
+| /-----------16 \------------ H005
+| | |
+| | \------------------------------------ H013
+| /----------18
+20 | | /------------ H007
+| | | |
+| | \-----------------------------------17------------ H012
+| | |
++----------19 \------------ H011
+| |
+| +------------------------------------------------------------- H008
+| |
+| \------------------------------------------------------------- H014
+|
++------------------------------------------------------------------------- H009
+|
+\------------------------------------------------------------------------- H006
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_20 --> node_19 9 1 0.500 1 ==> 2
+ node_19 --> node_18 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ 13 1 0.500 1 ==> 0
+ node_18 --> node_16 8 1 1.000 1 ==> 2
+ 10 1 0.500 1 ==> 2
+ node_16 --> node_15 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_15 --> H010 5 1 1.000 2 ==> 1
+ node_15 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_15 --> node_14 3 1 1.000 2 ==> 1
+ node_14 --> H003 4 1 1.000 2 ==> 1
+ node_14 --> H005 12 1 0.333 2 ==> 1
+ node_18 --> node_17 9 1 0.500 2 ==> 1
+ node_17 --> H007 12 1 0.333 2 ==> 1
+ node_17 --> H012 11 1 0.333 2 ==> 1
+ node_17 --> H011 13 1 0.500 0 ==> 1
+ node_19 --> H008 11 1 0.333 2 ==> 1
+ node_19 --> H014 10 1 0.500 1 ==> 2
+ node_20 --> H009 12 1 0.333 2 ==> 1
+ node_20 --> H006 11 1 0.333 2 ==> 1
+
+Tree number 8 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #8 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 22 0 0 0
+ 21 22 0 0 1
+ 20 21 1 1 1
+ 19 20 0 0 3
+ 18 19 3 2 3
+ 16 18 2 1 2
+ 15 16 2 2 2
+H010 (2) 15 1 1 1
+H001 (7) 15 2 2 2
+ 14 15 1 1 1
+H003 (8) 14 1 1 1
+H005 (9) 14 1 1 1
+H013 (6) 16 0 0 0
+ 17 18 1 1 2
+H007 (3) 17 1 1 1
+H012 (10) 17 1 1 1
+H011 (13) 17 1 1 1
+H014 (5) 19 1 0 1
+H008 (4) 20 1 0 1
+H006 (12) 21 1 0 1
+H009 (11) 22 1 1 1
+-------------------------------------------------------------------------
+Sum 22
+
+Tree length = 22
+Consistency index (CI) = 0.5909
+Homoplasy index (HI) = 0.4091
+CI excluding uninformative characters = 0.5500
+HI excluding uninformative characters = 0.4500
+Retention index (RI) = 0.7568
+Rescaled consistency index (RC) = 0.4472
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------ H010
+| |
+| +------------------ H001
+| /-------15
+| | | /--------- H003
+| | \-------14
+| /--------16 \--------- H005
+| | |
+| | \--------------------------- H013
+| /-------18
+22 | | /--------- H007
+| | | |
+| | \--------------------------17--------- H012
+| /-------19 |
+| | | \--------- H011
+| | |
+| /-------20 \---------------------------------------------- H014
+| | |
++-------21 \------------------------------------------------------- H008
+| |
+| \---------------------------------------------------------------- H006
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_20 9 1 0.500 1 ==> 2
+ node_19 --> node_18 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ 13 1 0.500 1 --> 0
+ node_18 --> node_16 8 1 1.000 1 ==> 2
+ 10 1 0.500 1 --> 2
+ node_16 --> node_15 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_15 --> H010 5 1 1.000 2 ==> 1
+ node_15 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_15 --> node_14 3 1 1.000 2 ==> 1
+ node_14 --> H003 4 1 1.000 2 ==> 1
+ node_14 --> H005 12 1 0.333 2 ==> 1
+ node_18 --> node_17 9 1 0.500 2 ==> 1
+ node_17 --> H007 12 1 0.333 2 ==> 1
+ node_17 --> H012 11 1 0.333 2 ==> 1
+ node_17 --> H011 13 1 0.500 0 ==> 1
+ node_19 --> H014 10 1 0.500 1 --> 2
+ node_20 --> H008 11 1 0.333 2 --> 1
+ node_21 --> H006 11 1 0.333 2 --> 1
+ node_22 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 9 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #9 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 22 0 0 0
+ 19 22 0 0 1
+ 18 19 3 3 3
+ 17 18 0 0 1
+ 16 17 3 3 3
+ 15 16 2 2 2
+H010 (2) 15 1 1 1
+H001 (7) 15 2 2 2
+ 14 15 1 1 1
+H003 (8) 14 1 1 1
+H005 (9) 14 1 1 1
+H013 (6) 16 0 0 0
+H012 (10) 17 1 1 1
+H011 (13) 17 1 1 1
+H007 (3) 18 1 0 1
+H009 (11) 19 1 0 1
+ 21 22 0 0 1
+ 20 21 1 1 1
+H008 (4) 20 1 0 1
+H014 (5) 20 1 1 2
+H006 (12) 21 1 0 1
+-------------------------------------------------------------------------
+Sum 22
+
+Tree length = 22
+Consistency index (CI) = 0.5909
+Homoplasy index (HI) = 0.4091
+CI excluding uninformative characters = 0.5500
+HI excluding uninformative characters = 0.4500
+Retention index (RI) = 0.7568
+Rescaled consistency index (RC) = 0.4472
+
+/------------------------------------------------------------------------- H002
+|
+| /--------------------- H010
+| |
+| +--------------------- H001
+| /--------15
+| | | /---------- H003
+| | \---------14
+| /---------16 \---------- H005
+| | |
+| | \------------------------------- H013
+| /--------17
+22 | +------------------------------------------ H012
+| | |
+| /---------18 \------------------------------------------ H011
+| | |
++--------19 \---------------------------------------------------- H007
+| |
+| \--------------------------------------------------------------- H009
+|
+| /---------- H008
+| /---------20
+| | \---------- H014
+\--------------------------------------------------21
+ \--------------------- H006
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_19 --> node_18 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ 13 1 0.500 1 ==> 0
+ node_17 --> node_16 8 1 1.000 1 ==> 2
+ 9 1 0.500 1 ==> 2
+ 10 1 0.500 1 ==> 2
+ node_16 --> node_15 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_15 --> H010 5 1 1.000 2 ==> 1
+ node_15 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_15 --> node_14 3 1 1.000 2 ==> 1
+ node_14 --> H003 4 1 1.000 2 ==> 1
+ node_14 --> H005 12 1 0.333 2 ==> 1
+ node_17 --> H012 11 1 0.333 2 ==> 1
+ node_17 --> H011 13 1 0.500 0 ==> 1
+ node_18 --> H007 12 1 0.333 2 --> 1
+ node_19 --> H009 12 1 0.333 2 --> 1
+ node_21 --> node_20 9 1 0.500 1 ==> 2
+ node_20 --> H008 11 1 0.333 2 --> 1
+ node_20 --> H014 10 1 0.500 1 ==> 2
+ node_21 --> H006 11 1 0.333 2 --> 1
+
+Tree number 10 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #10 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 20 0 0 0
+ 17 20 3 3 3
+ 16 17 3 3 3
+ 15 16 2 2 2
+H010 (2) 15 1 1 1
+H001 (7) 15 2 2 2
+ 14 15 1 1 1
+H003 (8) 14 1 1 1
+H005 (9) 14 1 1 1
+H013 (6) 16 0 0 0
+H007 (3) 17 1 1 1
+H012 (10) 17 1 1 1
+H011 (13) 17 1 1 1
+ 19 20 0 0 1
+ 18 19 1 1 1
+H008 (4) 18 1 0 1
+H006 (12) 18 0 0 1
+H014 (5) 19 2 1 2
+H009 (11) 20 1 1 1
+-------------------------------------------------------------------------
+Sum 22
+
+Tree length = 22
+Consistency index (CI) = 0.5909
+Homoplasy index (HI) = 0.4091
+CI excluding uninformative characters = 0.5500
+HI excluding uninformative characters = 0.4500
+Retention index (RI) = 0.7568
+Rescaled consistency index (RC) = 0.4472
+
+/------------------------------------------------------------------------- H002
+|
+| /----------------------------- H010
+| |
+| +----------------------------- H001
+| /-------------15
+| | | /--------------- H003
+| | \------------14
+| /------------16 \--------------- H005
+| | |
+| | \-------------------------------------------- H013
+| |
+20------------17---------------------------------------------------------- H007
+| |
+| +---------------------------------------------------------- H012
+| |
+| \---------------------------------------------------------- H011
+|
+| /--------------- H008
+| /------------18
+| | \--------------- H006
++------------------------------------------19
+| \----------------------------- H014
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_20 --> node_17 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ 13 1 0.500 1 ==> 0
+ node_17 --> node_16 8 1 1.000 1 ==> 2
+ 9 1 0.333 1 ==> 2
+ 10 1 0.500 1 ==> 2
+ node_16 --> node_15 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_15 --> H010 5 1 1.000 2 ==> 1
+ node_15 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_15 --> node_14 3 1 1.000 2 ==> 1
+ node_14 --> H003 4 1 1.000 2 ==> 1
+ node_14 --> H005 12 1 0.333 2 ==> 1
+ node_17 --> H007 12 1 0.333 2 ==> 1
+ node_17 --> H012 11 1 0.500 2 ==> 1
+ node_17 --> H011 13 1 0.500 0 ==> 1
+ node_19 --> node_18 11 1 0.500 2 ==> 1
+ node_18 --> H008 9 1 0.333 1 --> 2
+ node_19 --> H014 9 1 0.333 1 --> 2
+ 10 1 0.500 1 ==> 2
+ node_20 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 11 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #11 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 22 0 0 0
+ 21 22 0 0 1
+ 19 21 0 0 1
+ 18 19 3 3 3
+ 17 18 0 0 1
+ 16 17 3 3 3
+ 15 16 2 2 2
+H010 (2) 15 1 1 1
+H001 (7) 15 2 2 2
+ 14 15 1 1 1
+H003 (8) 14 1 1 1
+H005 (9) 14 1 1 1
+H013 (6) 16 0 0 0
+H007 (3) 17 1 1 1
+H011 (13) 17 1 1 1
+H012 (10) 18 1 0 1
+H006 (12) 19 1 0 1
+ 20 21 1 1 1
+H008 (4) 20 1 0 1
+H014 (5) 20 1 1 2
+H009 (11) 22 1 1 1
+-------------------------------------------------------------------------
+Sum 22
+
+Tree length = 22
+Consistency index (CI) = 0.5909
+Homoplasy index (HI) = 0.4091
+CI excluding uninformative characters = 0.5500
+HI excluding uninformative characters = 0.4500
+Retention index (RI) = 0.7568
+Rescaled consistency index (RC) = 0.4472
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------ H010
+| |
+| +------------------ H001
+| /-------15
+| | | /--------- H003
+| | \-------14
+| /--------16 \--------- H005
+| | |
+| | \--------------------------- H013
+| /-------17
+22 | +------------------------------------- H007
+| | |
+| /-------18 \------------------------------------- H011
+| | |
+| /-------19 \---------------------------------------------- H012
+| | |
+| | \------------------------------------------------------- H006
++-------21
+| | /--------- H008
+| \-----------------------------------------------------20
+| \--------- H014
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_19 --> node_18 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ 13 1 0.500 1 ==> 0
+ node_17 --> node_16 8 1 1.000 1 ==> 2
+ 9 1 0.500 1 ==> 2
+ 10 1 0.500 1 ==> 2
+ node_16 --> node_15 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_15 --> H010 5 1 1.000 2 ==> 1
+ node_15 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_15 --> node_14 3 1 1.000 2 ==> 1
+ node_14 --> H003 4 1 1.000 2 ==> 1
+ node_14 --> H005 12 1 0.333 2 ==> 1
+ node_17 --> H007 12 1 0.333 2 ==> 1
+ node_17 --> H011 13 1 0.500 0 ==> 1
+ node_18 --> H012 11 1 0.333 2 --> 1
+ node_19 --> H006 11 1 0.333 2 --> 1
+ node_21 --> node_20 9 1 0.500 1 ==> 2
+ node_20 --> H008 11 1 0.333 2 --> 1
+ node_20 --> H014 10 1 0.500 1 ==> 2
+ node_22 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 12 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #12 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 19 0 0 0
+ 17 19 3 3 3
+ 16 17 3 3 3
+ 15 16 2 2 2
+H010 (2) 15 1 1 1
+H001 (7) 15 2 2 2
+ 14 15 1 1 1
+H003 (8) 14 1 1 1
+H005 (9) 14 1 1 1
+H013 (6) 16 0 0 0
+H007 (3) 17 1 1 1
+H012 (10) 17 1 1 1
+H011 (13) 17 1 1 1
+ 18 19 1 1 1
+H008 (4) 18 1 1 1
+H006 (12) 18 0 0 0
+H014 (5) 19 2 2 2
+H009 (11) 19 1 1 1
+-------------------------------------------------------------------------
+Sum 22
+
+Tree length = 22
+Consistency index (CI) = 0.5909
+Homoplasy index (HI) = 0.4091
+CI excluding uninformative characters = 0.5500
+HI excluding uninformative characters = 0.4500
+Retention index (RI) = 0.7568
+Rescaled consistency index (RC) = 0.4472
+
+/------------------------------------------------------------------------- H002
+|
+| /----------------------------- H010
+| |
+| +----------------------------- H001
+| /-------------15
+| | | /--------------- H003
+| | \------------14
+| /------------16 \--------------- H005
+| | |
+| | \-------------------------------------------- H013
+| |
+19------------17---------------------------------------------------------- H007
+| |
+| +---------------------------------------------------------- H012
+| |
+| \---------------------------------------------------------- H011
+|
+| /--------------- H008
++--------------------------------------------------------18
+| \--------------- H006
+|
++------------------------------------------------------------------------- H014
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_19 --> node_17 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ 13 1 0.500 1 ==> 0
+ node_17 --> node_16 8 1 1.000 1 ==> 2
+ 9 1 0.333 1 ==> 2
+ 10 1 0.500 1 ==> 2
+ node_16 --> node_15 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_15 --> H010 5 1 1.000 2 ==> 1
+ node_15 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_15 --> node_14 3 1 1.000 2 ==> 1
+ node_14 --> H003 4 1 1.000 2 ==> 1
+ node_14 --> H005 12 1 0.333 2 ==> 1
+ node_17 --> H007 12 1 0.333 2 ==> 1
+ node_17 --> H012 11 1 0.500 2 ==> 1
+ node_17 --> H011 13 1 0.500 0 ==> 1
+ node_19 --> node_18 11 1 0.500 2 ==> 1
+ node_18 --> H008 9 1 0.333 1 ==> 2
+ node_19 --> H014 9 1 0.333 1 ==> 2
+ 10 1 0.500 1 ==> 2
+ node_19 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 13 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #13 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 21 0 0 0
+ 19 21 1 1 1
+ 18 19 1 1 2
+ 17 18 1 1 4
+ 16 17 2 2 3
+ 15 16 2 0 2
+H010 (2) 15 1 1 1
+ 14 15 1 1 1
+H003 (8) 14 1 1 1
+H005 (9) 14 1 1 1
+H013 (6) 16 1 0 3
+H001 (7) 17 2 0 2
+H014 (5) 18 0 0 0
+H008 (4) 19 1 1 1
+ 20 21 2 2 3
+H007 (3) 20 2 1 2
+H012 (10) 20 2 1 2
+H011 (13) 20 0 0 1
+H009 (11) 21 1 1 1
+H006 (12) 21 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7297
+Rescaled consistency index (RC) = 0.4125
+
+/------------------------------------------------------------------------- H002
+|
+| /--------------------- H010
+| |
+| /--------15 /---------- H003
+| | \---------14
+| /---------16 \---------- H005
+| | |
+| /--------17 \------------------------------- H013
+| | |
+| /---------18 \------------------------------------------ H001
+| | |
+21-------19 \---------------------------------------------------- H014
+| |
+| \--------------------------------------------------------------- H008
+|
+| /---------- H007
+| |
++-------------------------------------------------------------20---------- H012
+| |
+| \---------- H011
+|
++------------------------------------------------------------------------- H009
+|
+\------------------------------------------------------------------------- H006
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_19 9 1 1.000 1 ==> 2
+ node_19 --> node_18 10 1 1.000 1 ==> 2
+ node_18 --> node_17 8 1 1.000 1 ==> 2
+ node_17 --> node_16 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_16 --> node_15 6 1 0.500 1 --> 2
+ 7 1 0.500 1 --> 2
+ node_15 --> H010 5 1 1.000 2 ==> 1
+ node_15 --> node_14 3 1 1.000 2 ==> 1
+ node_14 --> H003 4 1 1.000 2 ==> 1
+ node_14 --> H005 12 1 0.333 2 ==> 1
+ node_16 --> H013 13 1 0.333 1 --> 0
+ node_17 --> H001 6 1 0.500 1 --> 2
+ 7 1 0.500 1 --> 2
+ node_19 --> H008 11 1 0.333 2 ==> 1
+ node_21 --> node_20 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_20 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_20 --> H012 11 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_21 --> H009 12 1 0.333 2 ==> 1
+ node_21 --> H006 11 1 0.333 2 ==> 1
+
+Tree number 14 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #14 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 22 0 0 0
+ 20 22 0 0 1
+ 19 20 1 1 1
+ 18 19 1 1 3
+ 17 18 1 1 4
+ 16 17 2 2 2
+ 15 16 2 0 2
+H010 (2) 15 1 1 1
+ 14 15 1 1 1
+H003 (8) 14 1 1 1
+H005 (9) 14 1 1 1
+H001 (7) 16 0 0 2
+H013 (6) 17 3 0 3
+H014 (5) 18 0 0 0
+H008 (4) 19 1 0 1
+H006 (12) 20 1 0 1
+ 21 22 2 2 3
+H007 (3) 21 2 1 2
+H012 (10) 21 2 1 2
+H011 (13) 21 0 0 1
+H009 (11) 22 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7297
+Rescaled consistency index (RC) = 0.4125
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------ H010
+| |
+| /-------15 /--------- H003
+| | \-------14
+| /--------16 \--------- H005
+| | |
+| /-------17 \--------------------------- H001
+| | |
+| /-------18 \------------------------------------- H013
+| | |
+22 /-------19 \---------------------------------------------- H014
+| | |
++-------20 \------------------------------------------------------- H008
+| |
+| \---------------------------------------------------------------- H006
+|
+| /--------- H007
+| |
++--------------------------------------------------------------21--------- H012
+| |
+| \--------- H011
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_20 --> node_19 9 1 1.000 1 ==> 2
+ node_19 --> node_18 10 1 1.000 1 ==> 2
+ node_18 --> node_17 8 1 1.000 1 ==> 2
+ node_17 --> node_16 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_16 --> node_15 1 1 0.333 1 --> 2
+ 2 1 0.333 1 --> 2
+ node_15 --> H010 5 1 1.000 2 ==> 1
+ node_15 --> node_14 3 1 1.000 2 ==> 1
+ node_14 --> H003 4 1 1.000 2 ==> 1
+ node_14 --> H005 12 1 0.333 2 ==> 1
+ node_17 --> H013 1 1 0.333 1 --> 2
+ 2 1 0.333 1 --> 2
+ 13 1 0.333 1 --> 0
+ node_19 --> H008 11 1 0.333 2 --> 1
+ node_20 --> H006 11 1 0.333 2 --> 1
+ node_22 --> node_21 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_21 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_21 --> H012 11 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_22 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 15 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #15 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 21 0 0 0
+ 18 21 2 2 3
+ 17 18 1 1 4
+ 16 17 2 2 2
+ 15 16 2 0 2
+H010 (2) 15 1 1 1
+ 14 15 1 1 1
+H003 (8) 14 1 1 1
+H005 (9) 14 1 1 1
+H001 (7) 16 0 0 2
+H013 (6) 17 2 0 3
+H014 (5) 18 0 0 0
+ 19 21 2 2 3
+H007 (3) 19 1 1 2
+H012 (10) 19 1 1 2
+H011 (13) 19 1 0 1
+ 20 21 2 1 2
+H008 (4) 20 1 1 1
+H006 (12) 20 0 0 0
+H009 (11) 21 2 1 2
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7297
+Rescaled consistency index (RC) = 0.4125
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------------ H010
+| |
+| /----------15 /------------ H003
+| | \----------14
+| /-----------16 \------------ H005
+| | |
+| /----------17 \------------------------------------ H001
+| | |
++----------18 \------------------------------------------------- H013
+| |
+21 \------------------------------------------------------------- H014
+|
+| /------------ H007
+| |
++-----------------------------------------------------------19------------ H012
+| |
+| \------------ H011
+|
+| /------------ H008
++-----------------------------------------------------------20
+| \------------ H006
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_18 9 1 0.500 1 ==> 2
+ 10 1 1.000 1 ==> 2
+ node_18 --> node_17 8 1 1.000 1 ==> 2
+ node_17 --> node_16 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_16 --> node_15 1 1 0.333 1 --> 2
+ 2 1 0.333 1 --> 2
+ node_15 --> H010 5 1 1.000 2 ==> 1
+ node_15 --> node_14 3 1 1.000 2 ==> 1
+ node_14 --> H003 4 1 1.000 2 ==> 1
+ node_14 --> H005 12 1 0.333 2 ==> 1
+ node_17 --> H013 1 1 0.333 1 --> 2
+ 2 1 0.333 1 --> 2
+ node_21 --> node_19 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_19 --> H007 12 1 0.333 2 ==> 1
+ node_19 --> H012 11 1 0.500 2 ==> 1
+ node_19 --> H011 13 1 0.333 0 --> 1
+ node_21 --> node_20 11 1 0.500 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_20 --> H008 9 1 0.500 1 ==> 2
+ node_21 --> H009 12 1 0.333 2 ==> 1
+ 13 1 0.333 0 --> 1
+
+Tree number 16 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #16 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 22 0 0 0
+ 20 22 1 1 3
+ 18 20 2 2 2
+ 17 18 1 1 3
+ 16 17 2 2 2
+ 15 16 2 0 2
+H010 (2) 15 1 1 1
+ 14 15 1 1 1
+H003 (8) 14 1 1 1
+H005 (9) 14 1 1 1
+H001 (7) 16 0 0 2
+H013 (6) 17 2 0 2
+H014 (5) 18 0 0 2
+ 19 20 2 0 2
+H007 (3) 19 1 1 1
+H012 (10) 19 1 1 1
+H011 (13) 19 1 1 1
+ 21 22 1 1 1
+H008 (4) 21 1 1 1
+H006 (12) 21 0 0 0
+H009 (11) 22 1 1 1
+-------------------------------------------------------------------------
+Sum 22
+
+Tree length = 22
+Consistency index (CI) = 0.5909
+Homoplasy index (HI) = 0.4091
+CI excluding uninformative characters = 0.5500
+HI excluding uninformative characters = 0.4500
+Retention index (RI) = 0.7568
+Rescaled consistency index (RC) = 0.4472
+
+/------------------------------------------------------------------------- H002
+|
+| /--------------------- H010
+| |
+| /--------15 /---------- H003
+| | \---------14
+| /---------16 \---------- H005
+| | |
+| /--------17 \------------------------------- H001
+| | |
+| /---------18 \------------------------------------------ H013
+| | |
+22 | \---------------------------------------------------- H014
++--------20
+| | /---------- H007
+| | |
+| \---------------------------------------------------19---------- H012
+| |
+| \---------- H011
+|
+| /---------- H008
++-------------------------------------------------------------21
+| \---------- H006
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_20 13 1 0.500 1 ==> 0
+ node_20 --> node_18 9 1 0.500 1 ==> 2
+ 10 1 1.000 1 ==> 2
+ node_18 --> node_17 8 1 1.000 1 ==> 2
+ node_17 --> node_16 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_16 --> node_15 1 1 0.333 1 --> 2
+ 2 1 0.333 1 --> 2
+ node_15 --> H010 5 1 1.000 2 ==> 1
+ node_15 --> node_14 3 1 1.000 2 ==> 1
+ node_14 --> H003 4 1 1.000 2 ==> 1
+ node_14 --> H005 12 1 0.333 2 ==> 1
+ node_17 --> H013 1 1 0.333 1 --> 2
+ 2 1 0.333 1 --> 2
+ node_20 --> node_19 1 1 0.333 1 --> 2
+ 2 1 0.333 1 --> 2
+ node_19 --> H007 12 1 0.333 2 ==> 1
+ node_19 --> H012 11 1 0.500 2 ==> 1
+ node_19 --> H011 13 1 0.500 0 ==> 1
+ node_22 --> node_21 11 1 0.500 2 ==> 1
+ node_21 --> H008 9 1 0.500 1 ==> 2
+ node_22 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 17 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #17 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 20 0 0 0
+ 18 20 3 3 3
+ 17 18 2 2 2
+ 16 17 1 1 1
+ 15 16 2 2 2
+H010 (2) 15 1 1 1
+H001 (7) 15 2 2 2
+ 14 15 1 1 1
+H003 (8) 14 1 1 1
+H005 (9) 14 1 1 1
+H013 (6) 16 0 0 0
+H014 (5) 17 2 2 2
+H007 (3) 18 1 1 1
+H012 (10) 18 1 1 1
+H011 (13) 18 1 1 1
+ 19 20 1 1 1
+H008 (4) 19 1 1 1
+H006 (12) 19 0 0 0
+H009 (11) 20 1 1 1
+-------------------------------------------------------------------------
+Sum 22
+
+Tree length = 22
+Consistency index (CI) = 0.5909
+Homoplasy index (HI) = 0.4091
+CI excluding uninformative characters = 0.5500
+HI excluding uninformative characters = 0.4500
+Retention index (RI) = 0.7568
+Rescaled consistency index (RC) = 0.4472
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------------ H010
+| |
+| +------------------------ H001
+| /----------15
+| | | /------------ H003
+| | \----------14
+| /-----------16 \------------ H005
+| | |
+| /----------17 \------------------------------------ H013
+| | |
+20 | \------------------------------------------------- H014
+| |
++----------18------------------------------------------------------------- H007
+| |
+| +------------------------------------------------------------- H012
+| |
+| \------------------------------------------------------------- H011
+|
+| /------------ H008
++-----------------------------------------------------------19
+| \------------ H006
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_20 --> node_18 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ 13 1 0.500 1 ==> 0
+ node_18 --> node_17 9 1 0.500 1 ==> 2
+ 10 1 1.000 1 ==> 2
+ node_17 --> node_16 8 1 1.000 1 ==> 2
+ node_16 --> node_15 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_15 --> H010 5 1 1.000 2 ==> 1
+ node_15 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_15 --> node_14 3 1 1.000 2 ==> 1
+ node_14 --> H003 4 1 1.000 2 ==> 1
+ node_14 --> H005 12 1 0.333 2 ==> 1
+ node_17 --> H014 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_18 --> H007 12 1 0.333 2 ==> 1
+ node_18 --> H012 11 1 0.500 2 ==> 1
+ node_18 --> H011 13 1 0.500 0 ==> 1
+ node_20 --> node_19 11 1 0.500 2 ==> 1
+ node_19 --> H008 9 1 0.500 1 ==> 2
+ node_20 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 18 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #18 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 21 0 0 0
+ 19 21 0 0 1
+ 18 19 1 1 1
+ 17 18 1 1 3
+ 16 17 3 3 4
+ 15 16 2 2 3
+H010 (2) 15 1 1 1
+H013 (6) 15 3 2 3
+ 14 15 1 1 1
+H003 (8) 14 1 1 1
+H005 (9) 14 1 1 1
+H001 (7) 16 0 0 0
+H014 (5) 17 0 0 0
+H008 (4) 18 1 0 1
+H006 (12) 19 1 0 1
+ 20 21 2 2 3
+H007 (3) 20 2 1 2
+H012 (10) 20 2 1 2
+H011 (13) 20 0 0 1
+H009 (11) 21 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7297
+Rescaled consistency index (RC) = 0.4125
+
+/------------------------------------------------------------------------- H002
+|
+| /--------------------- H010
+| |
+| +--------------------- H013
+| /--------15
+| | | /---------- H003
+| | \---------14
+| /---------16 \---------- H005
+| | |
+| /--------17 \------------------------------- H001
+| | |
+21 /---------18 \------------------------------------------ H014
+| | |
++--------19 \---------------------------------------------------- H008
+| |
+| \--------------------------------------------------------------- H006
+|
+| /---------- H007
+| |
++-------------------------------------------------------------20---------- H012
+| |
+| \---------- H011
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_19 --> node_18 9 1 1.000 1 ==> 2
+ node_18 --> node_17 10 1 1.000 1 ==> 2
+ node_17 --> node_16 6 1 0.500 1 ==> 2
+ 7 1 0.500 1 ==> 2
+ 8 1 1.000 1 ==> 2
+ node_16 --> node_15 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_15 --> H010 5 1 1.000 2 ==> 1
+ node_15 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_15 --> node_14 3 1 1.000 2 ==> 1
+ node_14 --> H003 4 1 1.000 2 ==> 1
+ node_14 --> H005 12 1 0.333 2 ==> 1
+ node_18 --> H008 11 1 0.333 2 --> 1
+ node_19 --> H006 11 1 0.333 2 --> 1
+ node_21 --> node_20 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_20 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_20 --> H012 11 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_21 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 19 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #19 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 22 0 0 0
+ 20 22 0 0 1
+ 18 20 2 1 3
+ 17 18 1 1 4
+ 16 17 2 2 2
+ 15 16 2 0 2
+H010 (2) 15 1 1 1
+ 14 15 1 1 1
+H003 (8) 14 1 1 1
+H005 (9) 14 1 1 1
+H001 (7) 16 0 0 2
+H013 (6) 17 2 0 3
+H014 (5) 18 0 0 0
+ 19 20 2 1 2
+H008 (4) 19 1 0 1
+H006 (12) 19 0 0 1
+ 21 22 2 2 3
+H007 (3) 21 1 1 2
+H012 (10) 21 1 1 2
+H011 (13) 21 1 0 1
+H009 (11) 22 2 1 2
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7297
+Rescaled consistency index (RC) = 0.4125
+
+/------------------------------------------------------------------------- H002
+|
+| /--------------------- H010
+| |
+| /--------15 /---------- H003
+| | \---------14
+| /---------16 \---------- H005
+| | |
+| /--------17 \------------------------------- H001
+| | |
+| /---------18 \------------------------------------------ H013
+| | |
+22 | \---------------------------------------------------- H014
++--------20
+| | /---------- H008
+| \---------------------------------------------------19
+| \---------- H006
+|
+| /---------- H007
+| |
++-------------------------------------------------------------21---------- H012
+| |
+| \---------- H011
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_20 --> node_18 9 1 0.500 1 --> 2
+ 10 1 1.000 1 ==> 2
+ node_18 --> node_17 8 1 1.000 1 ==> 2
+ node_17 --> node_16 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_16 --> node_15 1 1 0.333 1 --> 2
+ 2 1 0.333 1 --> 2
+ node_15 --> H010 5 1 1.000 2 ==> 1
+ node_15 --> node_14 3 1 1.000 2 ==> 1
+ node_14 --> H003 4 1 1.000 2 ==> 1
+ node_14 --> H005 12 1 0.333 2 ==> 1
+ node_17 --> H013 1 1 0.333 1 --> 2
+ 2 1 0.333 1 --> 2
+ node_20 --> node_19 11 1 0.500 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_19 --> H008 9 1 0.500 1 --> 2
+ node_22 --> node_21 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_21 --> H007 12 1 0.333 2 ==> 1
+ node_21 --> H012 11 1 0.500 2 ==> 1
+ node_21 --> H011 13 1 0.333 0 --> 1
+ node_22 --> H009 12 1 0.333 2 ==> 1
+ 13 1 0.333 0 --> 1
+
+Tree number 20 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #20 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 22 0 0 0
+ 20 22 0 0 1
+ 19 20 1 1 1
+ 18 19 1 1 3
+ 17 18 1 1 4
+ 16 17 2 2 3
+ 15 16 2 0 2
+H010 (2) 15 1 1 1
+ 14 15 1 1 1
+H003 (8) 14 1 1 1
+H005 (9) 14 1 1 1
+H013 (6) 16 1 0 3
+H001 (7) 17 2 0 2
+H014 (5) 18 0 0 0
+H008 (4) 19 1 0 1
+H006 (12) 20 1 0 1
+ 21 22 2 2 3
+H007 (3) 21 2 1 2
+H012 (10) 21 2 1 2
+H011 (13) 21 0 0 1
+H009 (11) 22 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7297
+Rescaled consistency index (RC) = 0.4125
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------ H010
+| |
+| /-------15 /--------- H003
+| | \-------14
+| /--------16 \--------- H005
+| | |
+| /-------17 \--------------------------- H013
+| | |
+| /-------18 \------------------------------------- H001
+| | |
+22 /-------19 \---------------------------------------------- H014
+| | |
++-------20 \------------------------------------------------------- H008
+| |
+| \---------------------------------------------------------------- H006
+|
+| /--------- H007
+| |
++--------------------------------------------------------------21--------- H012
+| |
+| \--------- H011
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_20 --> node_19 9 1 1.000 1 ==> 2
+ node_19 --> node_18 10 1 1.000 1 ==> 2
+ node_18 --> node_17 8 1 1.000 1 ==> 2
+ node_17 --> node_16 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_16 --> node_15 6 1 0.500 1 --> 2
+ 7 1 0.500 1 --> 2
+ node_15 --> H010 5 1 1.000 2 ==> 1
+ node_15 --> node_14 3 1 1.000 2 ==> 1
+ node_14 --> H003 4 1 1.000 2 ==> 1
+ node_14 --> H005 12 1 0.333 2 ==> 1
+ node_16 --> H013 13 1 0.333 1 --> 0
+ node_17 --> H001 6 1 0.500 1 --> 2
+ 7 1 0.500 1 --> 2
+ node_19 --> H008 11 1 0.333 2 --> 1
+ node_20 --> H006 11 1 0.333 2 --> 1
+ node_22 --> node_21 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_21 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_21 --> H012 11 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_22 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 21 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #21 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 23 0 0 0
+ 19 23 1 1 1
+ 18 19 1 1 2
+ 17 18 1 1 4
+ 16 17 2 2 2
+ 15 16 2 0 2
+H010 (2) 15 1 1 1
+ 14 15 1 1 1
+H003 (8) 14 1 1 1
+H005 (9) 14 1 1 1
+H001 (7) 16 0 0 2
+H013 (6) 17 3 0 3
+H014 (5) 18 0 0 0
+H008 (4) 19 1 1 1
+ 22 23 0 0 1
+ 21 22 2 2 3
+ 20 21 0 0 1
+H007 (3) 20 2 1 2
+H011 (13) 20 0 0 1
+H012 (10) 21 2 0 2
+H006 (12) 22 1 0 1
+H009 (11) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7297
+Rescaled consistency index (RC) = 0.4125
+
+/------------------------------------------------------------------------- H002
+|
+| /--------------------- H010
+| |
+| /--------15 /---------- H003
+| | \---------14
+| /---------16 \---------- H005
+| | |
+| /--------17 \------------------------------- H001
+| | |
+| /---------18 \------------------------------------------ H013
+| | |
+23-------19 \---------------------------------------------------- H014
+| |
+| \--------------------------------------------------------------- H008
+|
+| /---------- H007
+| /---------20
+| | \---------- H011
+| /--------21
+| | \--------------------- H012
++----------------------------------------22
+| \------------------------------- H006
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_19 9 1 1.000 1 ==> 2
+ node_19 --> node_18 10 1 1.000 1 ==> 2
+ node_18 --> node_17 8 1 1.000 1 ==> 2
+ node_17 --> node_16 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_16 --> node_15 1 1 0.333 1 --> 2
+ 2 1 0.333 1 --> 2
+ node_15 --> H010 5 1 1.000 2 ==> 1
+ node_15 --> node_14 3 1 1.000 2 ==> 1
+ node_14 --> H003 4 1 1.000 2 ==> 1
+ node_14 --> H005 12 1 0.333 2 ==> 1
+ node_17 --> H013 1 1 0.333 1 --> 2
+ 2 1 0.333 1 --> 2
+ 13 1 0.333 1 --> 0
+ node_19 --> H008 11 1 0.333 2 ==> 1
+ node_22 --> node_21 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_20 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_21 --> H012 11 1 0.333 2 --> 1
+ 13 1 0.333 1 --> 0
+ node_22 --> H006 11 1 0.333 2 --> 1
+ node_23 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 22 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #22 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 21 0 0 0
+ 19 21 0 0 1
+ 18 19 1 1 1
+ 17 18 1 1 3
+ 16 17 3 3 4
+ 15 16 2 2 2
+H010 (2) 15 1 1 1
+H001 (7) 15 2 2 2
+ 14 15 1 1 1
+H003 (8) 14 1 1 1
+H005 (9) 14 1 1 1
+H013 (6) 16 1 0 1
+H014 (5) 17 0 0 0
+H008 (4) 18 1 0 1
+H006 (12) 19 1 0 1
+ 20 21 2 2 3
+H007 (3) 20 2 1 2
+H012 (10) 20 2 1 2
+H011 (13) 20 0 0 1
+H009 (11) 21 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7297
+Rescaled consistency index (RC) = 0.4125
+
+/------------------------------------------------------------------------- H002
+|
+| /--------------------- H010
+| |
+| +--------------------- H001
+| /--------15
+| | | /---------- H003
+| | \---------14
+| /---------16 \---------- H005
+| | |
+| /--------17 \------------------------------- H013
+| | |
+21 /---------18 \------------------------------------------ H014
+| | |
++--------19 \---------------------------------------------------- H008
+| |
+| \--------------------------------------------------------------- H006
+|
+| /---------- H007
+| |
++-------------------------------------------------------------20---------- H012
+| |
+| \---------- H011
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_19 --> node_18 9 1 1.000 1 ==> 2
+ node_18 --> node_17 10 1 1.000 1 ==> 2
+ node_17 --> node_16 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ 8 1 1.000 1 ==> 2
+ node_16 --> node_15 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_15 --> H010 5 1 1.000 2 ==> 1
+ node_15 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_15 --> node_14 3 1 1.000 2 ==> 1
+ node_14 --> H003 4 1 1.000 2 ==> 1
+ node_14 --> H005 12 1 0.333 2 ==> 1
+ node_16 --> H013 13 1 0.333 1 --> 0
+ node_18 --> H008 11 1 0.333 2 --> 1
+ node_19 --> H006 11 1 0.333 2 --> 1
+ node_21 --> node_20 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_20 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_20 --> H012 11 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_21 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 23 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #23 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 24 0 0 0
+ 23 24 0 0 1
+ 20 23 0 0 1
+ 19 20 1 1 1
+ 18 19 1 1 3
+ 17 18 1 1 4
+ 16 17 2 2 2
+ 15 16 2 0 2
+H010 (2) 15 1 1 1
+ 14 15 1 1 1
+H003 (8) 14 1 1 1
+H005 (9) 14 1 1 1
+H001 (7) 16 0 0 2
+H013 (6) 17 3 0 3
+H014 (5) 18 0 0 0
+H008 (4) 19 1 0 1
+H006 (12) 20 1 0 1
+ 22 23 2 2 3
+ 21 22 0 0 1
+H007 (3) 21 2 1 2
+H011 (13) 21 0 0 1
+H012 (10) 22 2 0 2
+H009 (11) 24 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7297
+Rescaled consistency index (RC) = 0.4125
+
+/------------------------------------------------------------------------- H002
+|
+| /---------------- H010
+| |
+| /------15 /-------- H003
+| | \------14
+| /------16 \-------- H005
+| | |
+| /-------17 \------------------------ H001
+| | |
+| /------18 \-------------------------------- H013
+| | |
+24 /------19 \----------------------------------------- H014
+| | |
+| /------20 \------------------------------------------------- H008
+| | |
+| | \--------------------------------------------------------- H006
+| |
++------23 /-------- H007
+| | /------21
+| | | \-------- H011
+| \-----------------------------------------------22
+| \---------------- H012
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_20 --> node_19 9 1 1.000 1 ==> 2
+ node_19 --> node_18 10 1 1.000 1 ==> 2
+ node_18 --> node_17 8 1 1.000 1 ==> 2
+ node_17 --> node_16 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_16 --> node_15 1 1 0.333 1 --> 2
+ 2 1 0.333 1 --> 2
+ node_15 --> H010 5 1 1.000 2 ==> 1
+ node_15 --> node_14 3 1 1.000 2 ==> 1
+ node_14 --> H003 4 1 1.000 2 ==> 1
+ node_14 --> H005 12 1 0.333 2 ==> 1
+ node_17 --> H013 1 1 0.333 1 --> 2
+ 2 1 0.333 1 --> 2
+ 13 1 0.333 1 --> 0
+ node_19 --> H008 11 1 0.333 2 --> 1
+ node_20 --> H006 11 1 0.333 2 --> 1
+ node_23 --> node_22 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_21 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_22 --> H012 11 1 0.333 2 --> 1
+ 13 1 0.333 1 --> 0
+ node_24 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 24 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #24 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 24 0 0 0
+ 23 24 0 0 1
+ 19 23 1 1 1
+ 18 19 1 1 3
+ 17 18 1 1 4
+ 16 17 2 2 2
+ 15 16 2 0 2
+H010 (2) 15 1 1 1
+ 14 15 1 1 1
+H003 (8) 14 1 1 1
+H005 (9) 14 1 1 1
+H001 (7) 16 0 0 2
+H013 (6) 17 3 0 3
+H014 (5) 18 0 0 0
+H008 (4) 19 1 0 1
+ 22 23 0 0 1
+ 21 22 2 2 3
+ 20 21 0 0 1
+H007 (3) 20 2 1 2
+H011 (13) 20 0 0 1
+H012 (10) 21 2 0 2
+H006 (12) 22 1 0 1
+H009 (11) 24 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7297
+Rescaled consistency index (RC) = 0.4125
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------ H010
+| |
+| /-------15 /--------- H003
+| | \-------14
+| /--------16 \--------- H005
+| | |
+| /-------17 \--------------------------- H001
+| | |
+| /-------18 \------------------------------------- H013
+| | |
+24 /-------19 \---------------------------------------------- H014
+| | |
+| | \------------------------------------------------------- H008
+| |
+| | /--------- H007
++-------23 /-------20
+| | | \--------- H011
+| | /-------21
+| | | \------------------ H012
+| \-----------------------------------22
+| \--------------------------- H006
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_19 9 1 1.000 1 ==> 2
+ node_19 --> node_18 10 1 1.000 1 ==> 2
+ node_18 --> node_17 8 1 1.000 1 ==> 2
+ node_17 --> node_16 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_16 --> node_15 1 1 0.333 1 --> 2
+ 2 1 0.333 1 --> 2
+ node_15 --> H010 5 1 1.000 2 ==> 1
+ node_15 --> node_14 3 1 1.000 2 ==> 1
+ node_14 --> H003 4 1 1.000 2 ==> 1
+ node_14 --> H005 12 1 0.333 2 ==> 1
+ node_17 --> H013 1 1 0.333 1 --> 2
+ 2 1 0.333 1 --> 2
+ 13 1 0.333 1 --> 0
+ node_19 --> H008 11 1 0.333 2 --> 1
+ node_22 --> node_21 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_20 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_21 --> H012 11 1 0.333 2 --> 1
+ 13 1 0.333 1 --> 0
+ node_22 --> H006 11 1 0.333 2 --> 1
+ node_24 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 25 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #25 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 23 0 0 0
+ 22 23 0 0 1
+ 19 22 1 1 1
+ 18 19 1 1 3
+ 17 18 1 1 4
+ 16 17 2 2 2
+ 15 16 2 0 2
+H010 (2) 15 1 1 1
+ 14 15 1 1 1
+H003 (8) 14 1 1 1
+H005 (9) 14 1 1 1
+H001 (7) 16 0 0 2
+H013 (6) 17 3 0 3
+H014 (5) 18 0 0 0
+H008 (4) 19 1 0 1
+ 21 22 2 2 3
+ 20 21 0 0 1
+H007 (3) 20 2 1 2
+H011 (13) 20 0 0 1
+H012 (10) 21 2 0 2
+H006 (12) 22 1 0 1
+H009 (11) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7297
+Rescaled consistency index (RC) = 0.4125
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------ H010
+| |
+| /-------15 /--------- H003
+| | \-------14
+| /--------16 \--------- H005
+| | |
+| /-------17 \--------------------------- H001
+| | |
+| /-------18 \------------------------------------- H013
+| | |
+23 /-------19 \---------------------------------------------- H014
+| | |
+| | \------------------------------------------------------- H008
+| |
+| | /--------- H007
++-------22 /-------20
+| | | \--------- H011
+| +--------------------------------------------21
+| | \------------------ H012
+| |
+| \---------------------------------------------------------------- H006
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_19 9 1 1.000 1 ==> 2
+ node_19 --> node_18 10 1 1.000 1 ==> 2
+ node_18 --> node_17 8 1 1.000 1 ==> 2
+ node_17 --> node_16 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_16 --> node_15 1 1 0.333 1 --> 2
+ 2 1 0.333 1 --> 2
+ node_15 --> H010 5 1 1.000 2 ==> 1
+ node_15 --> node_14 3 1 1.000 2 ==> 1
+ node_14 --> H003 4 1 1.000 2 ==> 1
+ node_14 --> H005 12 1 0.333 2 ==> 1
+ node_17 --> H013 1 1 0.333 1 --> 2
+ 2 1 0.333 1 --> 2
+ 13 1 0.333 1 --> 0
+ node_19 --> H008 11 1 0.333 2 --> 1
+ node_22 --> node_21 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_20 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_21 --> H012 11 1 0.333 2 --> 1
+ 13 1 0.333 1 --> 0
+ node_22 --> H006 11 1 0.333 2 --> 1
+ node_23 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 26 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #26 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 24 0 0 0
+ 20 24 0 0 1
+ 19 20 1 1 1
+ 18 19 1 1 3
+ 17 18 1 1 4
+ 16 17 2 2 2
+ 15 16 2 0 2
+H010 (2) 15 1 1 1
+ 14 15 1 1 1
+H003 (8) 14 1 1 1
+H005 (9) 14 1 1 1
+H001 (7) 16 0 0 2
+H013 (6) 17 3 0 3
+H014 (5) 18 0 0 0
+H008 (4) 19 1 0 1
+H006 (12) 20 1 0 1
+ 23 24 0 0 1
+ 22 23 2 2 3
+H007 (3) 22 2 0 2
+ 21 22 0 0 1
+H012 (10) 21 2 1 2
+H011 (13) 21 0 0 1
+H009 (11) 23 1 0 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7297
+Rescaled consistency index (RC) = 0.4125
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------ H010
+| |
+| /-------15 /--------- H003
+| | \-------14
+| /--------16 \--------- H005
+| | |
+| /-------17 \--------------------------- H001
+| | |
+| /-------18 \------------------------------------- H013
+24 | |
+| /-------19 \---------------------------------------------- H014
+| | |
++-------20 \------------------------------------------------------- H008
+| |
+| \---------------------------------------------------------------- H006
+|
+| /------------------ H007
+| |
+| /-------22 /--------- H012
+| | \-------21
+\--------------------------------------------23 \--------- H011
+ |
+ \--------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_20 --> node_19 9 1 1.000 1 ==> 2
+ node_19 --> node_18 10 1 1.000 1 ==> 2
+ node_18 --> node_17 8 1 1.000 1 ==> 2
+ node_17 --> node_16 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_16 --> node_15 1 1 0.333 1 --> 2
+ 2 1 0.333 1 --> 2
+ node_15 --> H010 5 1 1.000 2 ==> 1
+ node_15 --> node_14 3 1 1.000 2 ==> 1
+ node_14 --> H003 4 1 1.000 2 ==> 1
+ node_14 --> H005 12 1 0.333 2 ==> 1
+ node_17 --> H013 1 1 0.333 1 --> 2
+ 2 1 0.333 1 --> 2
+ 13 1 0.333 1 --> 0
+ node_19 --> H008 11 1 0.333 2 --> 1
+ node_20 --> H006 11 1 0.333 2 --> 1
+ node_23 --> node_22 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_22 --> H007 12 1 0.333 2 --> 1
+ 13 1 0.333 1 --> 0
+ node_21 --> H012 11 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_23 --> H009 12 1 0.333 2 --> 1
+
+Tree number 27 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #27 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 21 0 0 0
+ 19 21 0 0 1
+ 18 19 3 3 3
+ 17 18 0 0 1
+ 16 17 3 3 3
+ 15 16 2 2 2
+H010 (2) 15 1 1 1
+H001 (7) 15 2 2 2
+ 14 15 1 1 1
+H003 (8) 14 1 1 1
+H005 (9) 14 1 1 1
+H013 (6) 16 0 0 0
+H012 (10) 17 1 1 1
+H011 (13) 17 1 1 1
+H007 (3) 18 1 0 1
+H009 (11) 19 1 0 1
+ 20 21 1 1 1
+H008 (4) 20 1 1 1
+H014 (5) 20 1 1 1
+H006 (12) 21 1 1 1
+-------------------------------------------------------------------------
+Sum 22
+
+Tree length = 22
+Consistency index (CI) = 0.5909
+Homoplasy index (HI) = 0.4091
+CI excluding uninformative characters = 0.5500
+HI excluding uninformative characters = 0.4500
+Retention index (RI) = 0.7568
+Rescaled consistency index (RC) = 0.4472
+
+/------------------------------------------------------------------------- H002
+|
+| /--------------------- H010
+| |
+| +--------------------- H001
+| /--------15
+| | | /---------- H003
+| | \---------14
+| /---------16 \---------- H005
+| | |
+| | \------------------------------- H013
+| /--------17
+21 | +------------------------------------------ H012
+| | |
+| /---------18 \------------------------------------------ H011
+| | |
++--------19 \---------------------------------------------------- H007
+| |
+| \--------------------------------------------------------------- H009
+|
+| /---------- H008
++-------------------------------------------------------------20
+| \---------- H014
+|
+\------------------------------------------------------------------------- H006
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_19 --> node_18 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ 13 1 0.500 1 ==> 0
+ node_17 --> node_16 8 1 1.000 1 ==> 2
+ 9 1 0.500 1 ==> 2
+ 10 1 0.500 1 ==> 2
+ node_16 --> node_15 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_15 --> H010 5 1 1.000 2 ==> 1
+ node_15 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_15 --> node_14 3 1 1.000 2 ==> 1
+ node_14 --> H003 4 1 1.000 2 ==> 1
+ node_14 --> H005 12 1 0.333 2 ==> 1
+ node_17 --> H012 11 1 0.333 2 ==> 1
+ node_17 --> H011 13 1 0.500 0 ==> 1
+ node_18 --> H007 12 1 0.333 2 --> 1
+ node_19 --> H009 12 1 0.333 2 --> 1
+ node_21 --> node_20 9 1 0.500 1 ==> 2
+ node_20 --> H008 11 1 0.333 2 ==> 1
+ node_20 --> H014 10 1 0.500 1 ==> 2
+ node_21 --> H006 11 1 0.333 2 ==> 1
+
+Tree number 28 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #28 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 21 0 0 0
+ 19 21 0 0 1
+ 18 19 3 3 3
+ 17 18 0 0 1
+ 16 17 3 3 3
+ 15 16 2 2 2
+H010 (2) 15 1 1 1
+H001 (7) 15 2 2 2
+ 14 15 1 1 1
+H003 (8) 14 1 1 1
+H005 (9) 14 1 1 1
+H013 (6) 16 0 0 0
+H012 (10) 17 1 1 1
+H011 (13) 17 1 1 1
+H007 (3) 18 1 0 1
+H009 (11) 19 1 0 1
+ 20 21 1 1 1
+H008 (4) 20 1 1 1
+H006 (12) 20 0 0 0
+H014 (5) 21 2 2 2
+-------------------------------------------------------------------------
+Sum 22
+
+Tree length = 22
+Consistency index (CI) = 0.5909
+Homoplasy index (HI) = 0.4091
+CI excluding uninformative characters = 0.5500
+HI excluding uninformative characters = 0.4500
+Retention index (RI) = 0.7568
+Rescaled consistency index (RC) = 0.4472
+
+/------------------------------------------------------------------------- H002
+|
+| /--------------------- H010
+| |
+| +--------------------- H001
+| /--------15
+| | | /---------- H003
+| | \---------14
+| /---------16 \---------- H005
+| | |
+| | \------------------------------- H013
+| /--------17
+21 | +------------------------------------------ H012
+| | |
+| /---------18 \------------------------------------------ H011
+| | |
++--------19 \---------------------------------------------------- H007
+| |
+| \--------------------------------------------------------------- H009
+|
+| /---------- H008
++-------------------------------------------------------------20
+| \---------- H006
+|
+\------------------------------------------------------------------------- H014
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_19 --> node_18 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ 13 1 0.500 1 ==> 0
+ node_17 --> node_16 8 1 1.000 1 ==> 2
+ 9 1 0.333 1 ==> 2
+ 10 1 0.500 1 ==> 2
+ node_16 --> node_15 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_15 --> H010 5 1 1.000 2 ==> 1
+ node_15 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_15 --> node_14 3 1 1.000 2 ==> 1
+ node_14 --> H003 4 1 1.000 2 ==> 1
+ node_14 --> H005 12 1 0.333 2 ==> 1
+ node_17 --> H012 11 1 0.500 2 ==> 1
+ node_17 --> H011 13 1 0.500 0 ==> 1
+ node_18 --> H007 12 1 0.333 2 --> 1
+ node_19 --> H009 12 1 0.333 2 --> 1
+ node_21 --> node_20 11 1 0.500 2 ==> 1
+ node_20 --> H008 9 1 0.333 1 ==> 2
+ node_21 --> H014 9 1 0.333 1 ==> 2
+ 10 1 0.500 1 ==> 2
+
+Tree number 29 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #29 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 22 0 0 0
+ 19 22 0 0 1
+ 18 19 3 3 3
+ 17 18 0 0 1
+ 16 17 3 3 3
+ 15 16 2 2 2
+H010 (2) 15 1 1 1
+H001 (7) 15 2 2 2
+ 14 15 1 1 1
+H003 (8) 14 1 1 1
+H005 (9) 14 1 1 1
+H013 (6) 16 0 0 0
+H012 (10) 17 1 1 1
+H011 (13) 17 1 1 1
+H007 (3) 18 1 0 1
+H009 (11) 19 1 0 1
+ 21 22 0 0 1
+ 20 21 1 1 1
+H008 (4) 20 1 0 1
+H006 (12) 20 0 0 1
+H014 (5) 21 2 1 2
+-------------------------------------------------------------------------
+Sum 22
+
+Tree length = 22
+Consistency index (CI) = 0.5909
+Homoplasy index (HI) = 0.4091
+CI excluding uninformative characters = 0.5500
+HI excluding uninformative characters = 0.4500
+Retention index (RI) = 0.7568
+Rescaled consistency index (RC) = 0.4472
+
+/------------------------------------------------------------------------- H002
+|
+| /--------------------- H010
+| |
+| +--------------------- H001
+| /--------15
+| | | /---------- H003
+| | \---------14
+| /---------16 \---------- H005
+| | |
+| | \------------------------------- H013
+| /--------17
+22 | +------------------------------------------ H012
+| | |
+| /---------18 \------------------------------------------ H011
+| | |
++--------19 \---------------------------------------------------- H007
+| |
+| \--------------------------------------------------------------- H009
+|
+| /---------- H008
+| /---------20
+| | \---------- H006
+\--------------------------------------------------21
+ \--------------------- H014
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_19 --> node_18 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ 13 1 0.500 1 ==> 0
+ node_17 --> node_16 8 1 1.000 1 ==> 2
+ 9 1 0.333 1 ==> 2
+ 10 1 0.500 1 ==> 2
+ node_16 --> node_15 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_15 --> H010 5 1 1.000 2 ==> 1
+ node_15 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_15 --> node_14 3 1 1.000 2 ==> 1
+ node_14 --> H003 4 1 1.000 2 ==> 1
+ node_14 --> H005 12 1 0.333 2 ==> 1
+ node_17 --> H012 11 1 0.500 2 ==> 1
+ node_17 --> H011 13 1 0.500 0 ==> 1
+ node_18 --> H007 12 1 0.333 2 --> 1
+ node_19 --> H009 12 1 0.333 2 --> 1
+ node_21 --> node_20 11 1 0.500 2 ==> 1
+ node_20 --> H008 9 1 0.333 1 --> 2
+ node_21 --> H014 9 1 0.333 1 --> 2
+ 10 1 0.500 1 ==> 2
+
+Tree number 30 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #30 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 23 0 0 0
+ 19 23 0 0 1
+ 18 19 1 1 1
+ 17 18 1 1 3
+ 16 17 3 3 4
+ 15 16 2 2 2
+H010 (2) 15 1 1 1
+H001 (7) 15 2 2 2
+ 14 15 1 1 1
+H003 (8) 14 1 1 1
+H005 (9) 14 1 1 1
+H013 (6) 16 1 0 1
+H014 (5) 17 0 0 0
+H008 (4) 18 1 0 1
+H006 (12) 19 1 0 1
+ 22 23 0 0 1
+ 21 22 2 2 3
+H007 (3) 21 2 0 2
+ 20 21 0 0 1
+H012 (10) 20 2 1 2
+H011 (13) 20 0 0 1
+H009 (11) 22 1 0 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7297
+Rescaled consistency index (RC) = 0.4125
+
+/------------------------------------------------------------------------- H002
+|
+| /--------------------- H010
+| |
+| +--------------------- H001
+| /--------15
+| | | /---------- H003
+| | \---------14
+| /---------16 \---------- H005
+| | |
+| /--------17 \------------------------------- H013
+23 | |
+| /---------18 \------------------------------------------ H014
+| | |
++--------19 \---------------------------------------------------- H008
+| |
+| \--------------------------------------------------------------- H006
+|
+| /--------------------- H007
+| |
+| /--------21 /---------- H012
+| | \---------20
+\----------------------------------------22 \---------- H011
+ |
+ \------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_19 --> node_18 9 1 1.000 1 ==> 2
+ node_18 --> node_17 10 1 1.000 1 ==> 2
+ node_17 --> node_16 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ 8 1 1.000 1 ==> 2
+ node_16 --> node_15 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_15 --> H010 5 1 1.000 2 ==> 1
+ node_15 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_15 --> node_14 3 1 1.000 2 ==> 1
+ node_14 --> H003 4 1 1.000 2 ==> 1
+ node_14 --> H005 12 1 0.333 2 ==> 1
+ node_16 --> H013 13 1 0.333 1 --> 0
+ node_18 --> H008 11 1 0.333 2 --> 1
+ node_19 --> H006 11 1 0.333 2 --> 1
+ node_22 --> node_21 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_21 --> H007 12 1 0.333 2 --> 1
+ 13 1 0.333 1 --> 0
+ node_20 --> H012 11 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_22 --> H009 12 1 0.333 2 --> 1
+
+Tree number 31 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #31 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 23 0 0 0
+ 19 23 0 0 1
+ 18 19 1 1 1
+ 17 18 1 1 3
+ 16 17 3 3 4
+ 15 16 2 2 3
+H010 (2) 15 1 1 1
+H013 (6) 15 3 2 3
+ 14 15 1 1 1
+H003 (8) 14 1 1 1
+H005 (9) 14 1 1 1
+H001 (7) 16 0 0 0
+H014 (5) 17 0 0 0
+H008 (4) 18 1 0 1
+H006 (12) 19 1 0 1
+ 22 23 0 0 1
+ 21 22 2 2 3
+H007 (3) 21 2 0 2
+ 20 21 0 0 1
+H012 (10) 20 2 1 2
+H011 (13) 20 0 0 1
+H009 (11) 22 1 0 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7297
+Rescaled consistency index (RC) = 0.4125
+
+/------------------------------------------------------------------------- H002
+|
+| /--------------------- H010
+| |
+| +--------------------- H013
+| /--------15
+| | | /---------- H003
+| | \---------14
+| /---------16 \---------- H005
+| | |
+| /--------17 \------------------------------- H001
+23 | |
+| /---------18 \------------------------------------------ H014
+| | |
++--------19 \---------------------------------------------------- H008
+| |
+| \--------------------------------------------------------------- H006
+|
+| /--------------------- H007
+| |
+| /--------21 /---------- H012
+| | \---------20
+\----------------------------------------22 \---------- H011
+ |
+ \------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_19 --> node_18 9 1 1.000 1 ==> 2
+ node_18 --> node_17 10 1 1.000 1 ==> 2
+ node_17 --> node_16 6 1 0.500 1 ==> 2
+ 7 1 0.500 1 ==> 2
+ 8 1 1.000 1 ==> 2
+ node_16 --> node_15 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_15 --> H010 5 1 1.000 2 ==> 1
+ node_15 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_15 --> node_14 3 1 1.000 2 ==> 1
+ node_14 --> H003 4 1 1.000 2 ==> 1
+ node_14 --> H005 12 1 0.333 2 ==> 1
+ node_18 --> H008 11 1 0.333 2 --> 1
+ node_19 --> H006 11 1 0.333 2 --> 1
+ node_22 --> node_21 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_21 --> H007 12 1 0.333 2 --> 1
+ 13 1 0.333 1 --> 0
+ node_20 --> H012 11 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_22 --> H009 12 1 0.333 2 --> 1
+
+Tree number 32 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #32 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 22 0 0 0
+ 20 22 0 0 1
+ 19 20 3 3 3
+ 18 19 0 0 1
+ 17 18 2 2 2
+ 16 17 1 1 1
+ 15 16 2 2 2
+H010 (2) 15 1 1 1
+H001 (7) 15 2 2 2
+ 14 15 1 1 1
+H003 (8) 14 1 1 1
+H005 (9) 14 1 1 1
+H013 (6) 16 0 0 0
+H014 (5) 17 2 2 2
+H012 (10) 18 1 1 1
+H011 (13) 18 1 1 1
+H007 (3) 19 1 0 1
+H009 (11) 20 1 0 1
+ 21 22 1 1 1
+H008 (4) 21 1 1 1
+H006 (12) 21 0 0 0
+-------------------------------------------------------------------------
+Sum 22
+
+Tree length = 22
+Consistency index (CI) = 0.5909
+Homoplasy index (HI) = 0.4091
+CI excluding uninformative characters = 0.5500
+HI excluding uninformative characters = 0.4500
+Retention index (RI) = 0.7568
+Rescaled consistency index (RC) = 0.4472
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------ H010
+| |
+| +------------------ H001
+| /-------15
+| | | /--------- H003
+| | \-------14
+| /--------16 \--------- H005
+| | |
+| /-------17 \--------------------------- H013
+| | |
+22 | \------------------------------------- H014
+| /-------18
+| | +---------------------------------------------- H012
+| | |
+| /-------19 \---------------------------------------------- H011
+| | |
++-------20 \------------------------------------------------------- H007
+| |
+| \---------------------------------------------------------------- H009
+|
+| /--------- H008
+\--------------------------------------------------------------21
+ \--------- H006
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_20 --> node_19 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ 13 1 0.500 1 ==> 0
+ node_18 --> node_17 9 1 0.500 1 ==> 2
+ 10 1 1.000 1 ==> 2
+ node_17 --> node_16 8 1 1.000 1 ==> 2
+ node_16 --> node_15 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_15 --> H010 5 1 1.000 2 ==> 1
+ node_15 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_15 --> node_14 3 1 1.000 2 ==> 1
+ node_14 --> H003 4 1 1.000 2 ==> 1
+ node_14 --> H005 12 1 0.333 2 ==> 1
+ node_17 --> H014 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_18 --> H012 11 1 0.500 2 ==> 1
+ node_18 --> H011 13 1 0.500 0 ==> 1
+ node_19 --> H007 12 1 0.333 2 --> 1
+ node_20 --> H009 12 1 0.333 2 --> 1
+ node_22 --> node_21 11 1 0.500 2 ==> 1
+ node_21 --> H008 9 1 0.500 1 ==> 2
+
+Tree number 33 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #33 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 22 0 0 0
+ 21 22 0 0 1
+ 20 21 1 1 1
+ 19 20 0 0 1
+ 18 19 3 3 3
+ 17 18 1 1 1
+ 16 17 3 3 3
+ 15 16 2 2 2
+H010 (2) 15 1 1 1
+H001 (7) 15 2 2 2
+ 14 15 1 1 1
+H003 (8) 14 1 1 1
+H005 (9) 14 1 1 1
+H013 (6) 16 0 0 0
+H007 (3) 17 1 1 1
+H011 (13) 17 1 1 1
+H012 (10) 18 0 0 0
+H006 (12) 19 0 0 0
+H008 (4) 20 1 0 1
+H014 (5) 21 2 1 2
+H009 (11) 22 1 1 1
+-------------------------------------------------------------------------
+Sum 22
+
+Tree length = 22
+Consistency index (CI) = 0.5909
+Homoplasy index (HI) = 0.4091
+CI excluding uninformative characters = 0.5500
+HI excluding uninformative characters = 0.4500
+Retention index (RI) = 0.7568
+Rescaled consistency index (RC) = 0.4472
+
+/------------------------------------------------------------------------- H002
+|
+| /---------------- H010
+| |
+| +---------------- H001
+| /------15
+| | | /-------- H003
+| | \------14
+| /------16 \-------- H005
+| | |
+| | \------------------------ H013
+| /-------17
+22 | +-------------------------------- H007
+| | |
+| /------18 \-------------------------------- H011
+| | |
+| /------19 \----------------------------------------- H012
+| | |
+| /------20 \------------------------------------------------- H006
+| | |
++------21 \--------------------------------------------------------- H008
+| |
+| \----------------------------------------------------------------- H014
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_20 11 1 0.500 2 ==> 1
+ node_19 --> node_18 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ 13 1 0.500 1 ==> 0
+ node_18 --> node_17 11 1 0.500 1 ==> 2
+ node_17 --> node_16 8 1 1.000 1 ==> 2
+ 9 1 0.333 1 ==> 2
+ 10 1 0.500 1 ==> 2
+ node_16 --> node_15 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_15 --> H010 5 1 1.000 2 ==> 1
+ node_15 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_15 --> node_14 3 1 1.000 2 ==> 1
+ node_14 --> H003 4 1 1.000 2 ==> 1
+ node_14 --> H005 12 1 0.333 2 ==> 1
+ node_17 --> H007 12 1 0.333 2 ==> 1
+ node_17 --> H011 13 1 0.500 0 ==> 1
+ node_20 --> H008 9 1 0.333 1 --> 2
+ node_21 --> H014 9 1 0.333 1 --> 2
+ 10 1 0.500 1 ==> 2
+ node_22 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 34 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #34 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 21 0 0 0
+ 19 21 0 0 1
+ 18 19 3 3 3
+ 17 18 0 0 1
+ 16 17 3 3 3
+ 15 16 2 2 2
+H010 (2) 15 1 1 1
+H001 (7) 15 2 2 2
+ 14 15 1 1 1
+H003 (8) 14 1 1 1
+H005 (9) 14 1 1 1
+H013 (6) 16 0 0 0
+H007 (3) 17 1 1 1
+H011 (13) 17 1 1 1
+H012 (10) 18 1 0 1
+H006 (12) 19 1 0 1
+ 20 21 1 1 1
+H008 (4) 20 1 1 1
+H014 (5) 20 1 1 1
+H009 (11) 21 1 1 1
+-------------------------------------------------------------------------
+Sum 22
+
+Tree length = 22
+Consistency index (CI) = 0.5909
+Homoplasy index (HI) = 0.4091
+CI excluding uninformative characters = 0.5500
+HI excluding uninformative characters = 0.4500
+Retention index (RI) = 0.7568
+Rescaled consistency index (RC) = 0.4472
+
+/------------------------------------------------------------------------- H002
+|
+| /--------------------- H010
+| |
+| +--------------------- H001
+| /--------15
+| | | /---------- H003
+| | \---------14
+| /---------16 \---------- H005
+| | |
+| | \------------------------------- H013
+| /--------17
+21 | +------------------------------------------ H007
+| | |
+| /---------18 \------------------------------------------ H011
+| | |
++--------19 \---------------------------------------------------- H012
+| |
+| \--------------------------------------------------------------- H006
+|
+| /---------- H008
++-------------------------------------------------------------20
+| \---------- H014
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_19 --> node_18 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ 13 1 0.500 1 ==> 0
+ node_17 --> node_16 8 1 1.000 1 ==> 2
+ 9 1 0.500 1 ==> 2
+ 10 1 0.500 1 ==> 2
+ node_16 --> node_15 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_15 --> H010 5 1 1.000 2 ==> 1
+ node_15 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_15 --> node_14 3 1 1.000 2 ==> 1
+ node_14 --> H003 4 1 1.000 2 ==> 1
+ node_14 --> H005 12 1 0.333 2 ==> 1
+ node_17 --> H007 12 1 0.333 2 ==> 1
+ node_17 --> H011 13 1 0.500 0 ==> 1
+ node_18 --> H012 11 1 0.333 2 --> 1
+ node_19 --> H006 11 1 0.333 2 --> 1
+ node_21 --> node_20 9 1 0.500 1 ==> 2
+ node_20 --> H008 11 1 0.333 2 ==> 1
+ node_20 --> H014 10 1 0.500 1 ==> 2
+ node_21 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 35 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #35 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 23 0 0 0
+ 22 23 0 0 1
+ 19 22 0 0 1
+ 18 19 1 1 1
+ 17 18 1 1 3
+ 16 17 3 3 4
+ 15 16 2 2 2
+H010 (2) 15 1 1 1
+H001 (7) 15 2 2 2
+ 14 15 1 1 1
+H003 (8) 14 1 1 1
+H005 (9) 14 1 1 1
+H013 (6) 16 1 0 1
+H014 (5) 17 0 0 0
+H008 (4) 18 1 0 1
+H006 (12) 19 1 0 1
+ 21 22 2 2 3
+ 20 21 0 0 1
+H007 (3) 20 2 1 2
+H011 (13) 20 0 0 1
+H012 (10) 21 2 0 2
+H009 (11) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7297
+Rescaled consistency index (RC) = 0.4125
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------ H010
+| |
+| +------------------ H001
+| /-------15
+| | | /--------- H003
+| | \-------14
+| /--------16 \--------- H005
+| | |
+| /-------17 \--------------------------- H013
+| | |
+23 /-------18 \------------------------------------- H014
+| | |
+| /-------19 \---------------------------------------------- H008
+| | |
+| | \------------------------------------------------------- H006
+| |
++-------22 /--------- H007
+| | /-------20
+| | | \--------- H011
+| \--------------------------------------------21
+| \------------------ H012
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_19 --> node_18 9 1 1.000 1 ==> 2
+ node_18 --> node_17 10 1 1.000 1 ==> 2
+ node_17 --> node_16 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ 8 1 1.000 1 ==> 2
+ node_16 --> node_15 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_15 --> H010 5 1 1.000 2 ==> 1
+ node_15 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_15 --> node_14 3 1 1.000 2 ==> 1
+ node_14 --> H003 4 1 1.000 2 ==> 1
+ node_14 --> H005 12 1 0.333 2 ==> 1
+ node_16 --> H013 13 1 0.333 1 --> 0
+ node_18 --> H008 11 1 0.333 2 --> 1
+ node_19 --> H006 11 1 0.333 2 --> 1
+ node_22 --> node_21 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_20 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_21 --> H012 11 1 0.333 2 --> 1
+ 13 1 0.333 1 --> 0
+ node_23 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 36 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #36 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 21 0 0 0
+ 20 21 0 0 1
+ 18 20 3 3 3
+ 17 18 0 0 1
+ 16 17 3 3 3
+ 15 16 2 2 2
+H010 (2) 15 1 1 1
+H001 (7) 15 2 2 2
+ 14 15 1 1 1
+H003 (8) 14 1 1 1
+H005 (9) 14 1 1 1
+H013 (6) 16 0 0 0
+H007 (3) 17 1 1 1
+H011 (13) 17 1 1 1
+H012 (10) 18 1 0 1
+ 19 20 1 0 1
+H008 (4) 19 1 1 1
+H006 (12) 19 0 0 0
+H014 (5) 21 2 2 2
+H009 (11) 21 1 1 1
+-------------------------------------------------------------------------
+Sum 22
+
+Tree length = 22
+Consistency index (CI) = 0.5909
+Homoplasy index (HI) = 0.4091
+CI excluding uninformative characters = 0.5500
+HI excluding uninformative characters = 0.4500
+Retention index (RI) = 0.7568
+Rescaled consistency index (RC) = 0.4472
+
+/------------------------------------------------------------------------- H002
+|
+| /--------------------- H010
+| |
+| +--------------------- H001
+| /--------15
+| | | /---------- H003
+| | \---------14
+| /---------16 \---------- H005
+| | |
+| | \------------------------------- H013
+| /--------17
+21 | +------------------------------------------ H007
+| | |
+| /---------18 \------------------------------------------ H011
+| | |
+| | \---------------------------------------------------- H012
++--------20
+| | /---------- H008
+| \---------------------------------------------------19
+| \---------- H006
+|
++------------------------------------------------------------------------- H014
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_20 --> node_18 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ 13 1 0.500 1 ==> 0
+ node_17 --> node_16 8 1 1.000 1 ==> 2
+ 9 1 0.333 1 ==> 2
+ 10 1 0.500 1 ==> 2
+ node_16 --> node_15 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_15 --> H010 5 1 1.000 2 ==> 1
+ node_15 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_15 --> node_14 3 1 1.000 2 ==> 1
+ node_14 --> H003 4 1 1.000 2 ==> 1
+ node_14 --> H005 12 1 0.333 2 ==> 1
+ node_17 --> H007 12 1 0.333 2 ==> 1
+ node_17 --> H011 13 1 0.500 0 ==> 1
+ node_18 --> H012 11 1 0.500 2 --> 1
+ node_20 --> node_19 11 1 0.500 2 --> 1
+ node_19 --> H008 9 1 0.333 1 ==> 2
+ node_21 --> H014 9 1 0.333 1 ==> 2
+ 10 1 0.500 1 ==> 2
+ node_21 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 37 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #37 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 22 0 0 0
+ 21 22 0 0 1
+ 19 21 3 3 3
+ 18 19 0 0 1
+ 17 18 2 2 2
+ 16 17 1 1 1
+ 15 16 2 2 2
+H010 (2) 15 1 1 1
+H001 (7) 15 2 2 2
+ 14 15 1 1 1
+H003 (8) 14 1 1 1
+H005 (9) 14 1 1 1
+H013 (6) 16 0 0 0
+H014 (5) 17 2 2 2
+H007 (3) 18 1 1 1
+H011 (13) 18 1 1 1
+H012 (10) 19 1 0 1
+ 20 21 1 0 1
+H008 (4) 20 1 1 1
+H006 (12) 20 0 0 0
+H009 (11) 22 1 1 1
+-------------------------------------------------------------------------
+Sum 22
+
+Tree length = 22
+Consistency index (CI) = 0.5909
+Homoplasy index (HI) = 0.4091
+CI excluding uninformative characters = 0.5500
+HI excluding uninformative characters = 0.4500
+Retention index (RI) = 0.7568
+Rescaled consistency index (RC) = 0.4472
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------ H010
+| |
+| +------------------ H001
+| /-------15
+| | | /--------- H003
+| | \-------14
+| /--------16 \--------- H005
+| | |
+| /-------17 \--------------------------- H013
+| | |
+22 | \------------------------------------- H014
+| /-------18
+| | +---------------------------------------------- H007
+| | |
+| /-------19 \---------------------------------------------- H011
+| | |
+| | \------------------------------------------------------- H012
++-------21
+| | /--------- H008
+| \-----------------------------------------------------20
+| \--------- H006
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_19 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ 13 1 0.500 1 ==> 0
+ node_18 --> node_17 9 1 0.500 1 ==> 2
+ 10 1 1.000 1 ==> 2
+ node_17 --> node_16 8 1 1.000 1 ==> 2
+ node_16 --> node_15 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_15 --> H010 5 1 1.000 2 ==> 1
+ node_15 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_15 --> node_14 3 1 1.000 2 ==> 1
+ node_14 --> H003 4 1 1.000 2 ==> 1
+ node_14 --> H005 12 1 0.333 2 ==> 1
+ node_17 --> H014 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_18 --> H007 12 1 0.333 2 ==> 1
+ node_18 --> H011 13 1 0.500 0 ==> 1
+ node_19 --> H012 11 1 0.500 2 --> 1
+ node_21 --> node_20 11 1 0.500 2 --> 1
+ node_20 --> H008 9 1 0.500 1 ==> 2
+ node_22 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 38 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #38 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 23 0 0 0
+ 22 23 0 0 1
+ 19 22 0 0 1
+ 18 19 1 1 1
+ 17 18 1 1 3
+ 16 17 3 3 4
+ 15 16 2 2 3
+H010 (2) 15 1 1 1
+H013 (6) 15 3 2 3
+ 14 15 1 1 1
+H003 (8) 14 1 1 1
+H005 (9) 14 1 1 1
+H001 (7) 16 0 0 0
+H014 (5) 17 0 0 0
+H008 (4) 18 1 0 1
+H006 (12) 19 1 0 1
+ 21 22 2 2 3
+ 20 21 0 0 1
+H007 (3) 20 2 1 2
+H011 (13) 20 0 0 1
+H012 (10) 21 2 0 2
+H009 (11) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7297
+Rescaled consistency index (RC) = 0.4125
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------ H010
+| |
+| +------------------ H013
+| /-------15
+| | | /--------- H003
+| | \-------14
+| /--------16 \--------- H005
+| | |
+| /-------17 \--------------------------- H001
+| | |
+23 /-------18 \------------------------------------- H014
+| | |
+| /-------19 \---------------------------------------------- H008
+| | |
+| | \------------------------------------------------------- H006
+| |
++-------22 /--------- H007
+| | /-------20
+| | | \--------- H011
+| \--------------------------------------------21
+| \------------------ H012
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_19 --> node_18 9 1 1.000 1 ==> 2
+ node_18 --> node_17 10 1 1.000 1 ==> 2
+ node_17 --> node_16 6 1 0.500 1 ==> 2
+ 7 1 0.500 1 ==> 2
+ 8 1 1.000 1 ==> 2
+ node_16 --> node_15 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_15 --> H010 5 1 1.000 2 ==> 1
+ node_15 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_15 --> node_14 3 1 1.000 2 ==> 1
+ node_14 --> H003 4 1 1.000 2 ==> 1
+ node_14 --> H005 12 1 0.333 2 ==> 1
+ node_18 --> H008 11 1 0.333 2 --> 1
+ node_19 --> H006 11 1 0.333 2 --> 1
+ node_22 --> node_21 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_20 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_21 --> H012 11 1 0.333 2 --> 1
+ 13 1 0.333 1 --> 0
+ node_23 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 39 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #39 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 21 0 0 0
+ 20 21 1 1 1
+ 19 20 0 0 2
+ 18 19 3 2 3
+ 16 18 2 1 2
+ 15 16 2 2 2
+H010 (2) 15 1 1 1
+H001 (7) 15 2 2 2
+ 14 15 1 1 1
+H003 (8) 14 1 1 1
+H005 (9) 14 1 1 1
+H013 (6) 16 0 0 0
+ 17 18 1 1 2
+H007 (3) 17 1 1 1
+H012 (10) 17 1 1 1
+H011 (13) 17 1 1 1
+H014 (5) 19 1 0 1
+H008 (4) 20 1 1 1
+H009 (11) 21 1 1 1
+H006 (12) 21 1 1 1
+-------------------------------------------------------------------------
+Sum 22
+
+Tree length = 22
+Consistency index (CI) = 0.5909
+Homoplasy index (HI) = 0.4091
+CI excluding uninformative characters = 0.5500
+HI excluding uninformative characters = 0.4500
+Retention index (RI) = 0.7568
+Rescaled consistency index (RC) = 0.4472
+
+/------------------------------------------------------------------------- H002
+|
+| /--------------------- H010
+| |
+| +--------------------- H001
+| /--------15
+| | | /---------- H003
+| | \---------14
+| /---------16 \---------- H005
+| | |
+| | \------------------------------- H013
+| /--------18
+21 | | /---------- H007
+| | | |
+| | \------------------------------17---------- H012
+| /---------19 |
+| | | \---------- H011
+| | |
++--------20 \---------------------------------------------------- H014
+| |
+| \--------------------------------------------------------------- H008
+|
++------------------------------------------------------------------------- H009
+|
+\------------------------------------------------------------------------- H006
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_20 9 1 0.500 1 ==> 2
+ node_19 --> node_18 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ 13 1 0.500 1 --> 0
+ node_18 --> node_16 8 1 1.000 1 ==> 2
+ 10 1 0.500 1 --> 2
+ node_16 --> node_15 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_15 --> H010 5 1 1.000 2 ==> 1
+ node_15 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_15 --> node_14 3 1 1.000 2 ==> 1
+ node_14 --> H003 4 1 1.000 2 ==> 1
+ node_14 --> H005 12 1 0.333 2 ==> 1
+ node_18 --> node_17 9 1 0.500 2 ==> 1
+ node_17 --> H007 12 1 0.333 2 ==> 1
+ node_17 --> H012 11 1 0.333 2 ==> 1
+ node_17 --> H011 13 1 0.500 0 ==> 1
+ node_19 --> H014 10 1 0.500 1 --> 2
+ node_20 --> H008 11 1 0.333 2 ==> 1
+ node_21 --> H009 12 1 0.333 2 ==> 1
+ node_21 --> H006 11 1 0.333 2 ==> 1
+
+Tree number 40 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #40 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 21 0 0 0
+ 19 21 0 0 3
+ 18 19 3 2 3
+ 16 18 3 1 3
+ 15 16 2 2 2
+H010 (2) 15 1 1 1
+H001 (7) 15 2 2 2
+ 14 15 1 1 1
+H003 (8) 14 1 1 1
+H005 (9) 14 1 1 1
+H013 (6) 16 0 0 0
+ 17 18 0 0 2
+H007 (3) 17 1 1 1
+H012 (10) 17 1 1 1
+H011 (13) 17 1 1 1
+H014 (5) 19 2 0 2
+ 20 21 1 1 1
+H008 (4) 20 1 1 1
+H006 (12) 20 0 0 0
+H009 (11) 21 1 1 1
+-------------------------------------------------------------------------
+Sum 22
+
+Tree length = 22
+Consistency index (CI) = 0.5909
+Homoplasy index (HI) = 0.4091
+CI excluding uninformative characters = 0.5500
+HI excluding uninformative characters = 0.4500
+Retention index (RI) = 0.7568
+Rescaled consistency index (RC) = 0.4472
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------------ H010
+| |
+| +------------------------ H001
+| /----------15
+| | | /------------ H003
+| | \----------14
+| /-----------16 \------------ H005
+| | |
+| | \------------------------------------ H013
+| /----------18
+21 | | /------------ H007
+| | | |
+| | \-----------------------------------17------------ H012
++----------19 |
+| | \------------ H011
+| |
+| \------------------------------------------------------------- H014
+|
+| /------------ H008
++-----------------------------------------------------------20
+| \------------ H006
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_19 --> node_18 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ 13 1 0.500 1 --> 0
+ node_18 --> node_16 8 1 1.000 1 ==> 2
+ 9 1 0.333 1 --> 2
+ 10 1 0.500 1 --> 2
+ node_16 --> node_15 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_15 --> H010 5 1 1.000 2 ==> 1
+ node_15 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_15 --> node_14 3 1 1.000 2 ==> 1
+ node_14 --> H003 4 1 1.000 2 ==> 1
+ node_14 --> H005 12 1 0.333 2 ==> 1
+ node_17 --> H007 12 1 0.333 2 ==> 1
+ node_17 --> H012 11 1 0.500 2 ==> 1
+ node_17 --> H011 13 1 0.500 0 ==> 1
+ node_19 --> H014 9 1 0.333 1 --> 2
+ 10 1 0.500 1 --> 2
+ node_21 --> node_20 11 1 0.500 2 ==> 1
+ node_20 --> H008 9 1 0.333 1 ==> 2
+ node_21 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 41 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #41 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 22 0 0 0
+ 21 22 0 0 1
+ 18 21 3 3 3
+ 16 18 3 2 3
+ 15 16 2 2 2
+H010 (2) 15 1 1 1
+H001 (7) 15 2 2 2
+ 14 15 1 1 1
+H003 (8) 14 1 1 1
+H005 (9) 14 1 1 1
+H013 (6) 16 0 0 0
+ 17 18 0 0 1
+H007 (3) 17 1 1 1
+H012 (10) 17 1 1 1
+H011 (13) 17 1 1 1
+ 20 21 0 0 1
+ 19 20 1 1 1
+H008 (4) 19 1 0 1
+H006 (12) 19 0 0 1
+H014 (5) 20 2 1 2
+H009 (11) 22 1 1 1
+-------------------------------------------------------------------------
+Sum 22
+
+Tree length = 22
+Consistency index (CI) = 0.5909
+Homoplasy index (HI) = 0.4091
+CI excluding uninformative characters = 0.5500
+HI excluding uninformative characters = 0.4500
+Retention index (RI) = 0.7568
+Rescaled consistency index (RC) = 0.4472
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------------ H010
+| |
+| +------------------------ H001
+| /----------15
+| | | /------------ H003
+| | \----------14
+| /-----------16 \------------ H005
+| | |
+| | \------------------------------------ H013
+| /----------18
+22 | | /------------ H007
+| | | |
+| | \-----------------------------------17------------ H012
+| | |
++----------21 \------------ H011
+| |
+| | /------------ H008
+| | /----------19
+| | | \------------ H006
+| \-----------------------------------20
+| \------------------------ H014
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_18 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ 13 1 0.500 1 ==> 0
+ node_18 --> node_16 8 1 1.000 1 ==> 2
+ 9 1 0.333 1 --> 2
+ 10 1 0.500 1 ==> 2
+ node_16 --> node_15 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_15 --> H010 5 1 1.000 2 ==> 1
+ node_15 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_15 --> node_14 3 1 1.000 2 ==> 1
+ node_14 --> H003 4 1 1.000 2 ==> 1
+ node_14 --> H005 12 1 0.333 2 ==> 1
+ node_17 --> H007 12 1 0.333 2 ==> 1
+ node_17 --> H012 11 1 0.500 2 ==> 1
+ node_17 --> H011 13 1 0.500 0 ==> 1
+ node_20 --> node_19 11 1 0.500 2 ==> 1
+ node_19 --> H008 9 1 0.333 1 --> 2
+ node_20 --> H014 9 1 0.333 1 --> 2
+ 10 1 0.500 1 ==> 2
+ node_22 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 42 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #42 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 21 0 0 0
+ 20 21 0 0 1
+ 18 20 3 3 3
+ 16 18 3 2 3
+ 15 16 2 2 2
+H010 (2) 15 1 1 1
+H001 (7) 15 2 2 2
+ 14 15 1 1 1
+H003 (8) 14 1 1 1
+H005 (9) 14 1 1 1
+H013 (6) 16 0 0 0
+ 17 18 0 0 1
+H007 (3) 17 1 1 1
+H012 (10) 17 1 1 1
+H011 (13) 17 1 1 1
+ 19 20 1 1 1
+H008 (4) 19 1 0 1
+H006 (12) 19 0 0 1
+H014 (5) 20 2 1 2
+H009 (11) 21 1 1 1
+-------------------------------------------------------------------------
+Sum 22
+
+Tree length = 22
+Consistency index (CI) = 0.5909
+Homoplasy index (HI) = 0.4091
+CI excluding uninformative characters = 0.5500
+HI excluding uninformative characters = 0.4500
+Retention index (RI) = 0.7568
+Rescaled consistency index (RC) = 0.4472
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------------ H010
+| |
+| +------------------------ H001
+| /----------15
+| | | /------------ H003
+| | \----------14
+| /-----------16 \------------ H005
+| | |
+| | \------------------------------------ H013
+| /----------18
+21 | | /------------ H007
+| | | |
+| | \-----------------------------------17------------ H012
+| | |
+| | \------------ H011
++----------20
+| | /------------ H008
+| +-----------------------------------------------19
+| | \------------ H006
+| |
+| \------------------------------------------------------------- H014
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_20 --> node_18 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ 13 1 0.500 1 ==> 0
+ node_18 --> node_16 8 1 1.000 1 ==> 2
+ 9 1 0.333 1 --> 2
+ 10 1 0.500 1 ==> 2
+ node_16 --> node_15 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_15 --> H010 5 1 1.000 2 ==> 1
+ node_15 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_15 --> node_14 3 1 1.000 2 ==> 1
+ node_14 --> H003 4 1 1.000 2 ==> 1
+ node_14 --> H005 12 1 0.333 2 ==> 1
+ node_17 --> H007 12 1 0.333 2 ==> 1
+ node_17 --> H012 11 1 0.500 2 ==> 1
+ node_17 --> H011 13 1 0.500 0 ==> 1
+ node_20 --> node_19 11 1 0.500 2 ==> 1
+ node_19 --> H008 9 1 0.333 1 --> 2
+ node_20 --> H014 9 1 0.333 1 --> 2
+ 10 1 0.500 1 ==> 2
+ node_21 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 43 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #43 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 21 0 0 0
+ 19 21 1 1 3
+ 17 19 2 2 2
+ 16 17 3 1 3
+ 15 16 2 2 2
+H010 (2) 15 1 1 1
+H001 (7) 15 2 2 2
+ 14 15 1 1 1
+H003 (8) 14 1 1 1
+H005 (9) 14 1 1 1
+H013 (6) 16 0 0 0
+H014 (5) 17 0 0 2
+ 18 19 2 0 2
+H007 (3) 18 1 1 1
+H012 (10) 18 1 1 1
+H011 (13) 18 1 1 1
+ 20 21 1 1 1
+H008 (4) 20 1 1 1
+H006 (12) 20 0 0 0
+H009 (11) 21 1 1 1
+-------------------------------------------------------------------------
+Sum 22
+
+Tree length = 22
+Consistency index (CI) = 0.5909
+Homoplasy index (HI) = 0.4091
+CI excluding uninformative characters = 0.5500
+HI excluding uninformative characters = 0.4500
+Retention index (RI) = 0.7568
+Rescaled consistency index (RC) = 0.4472
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------------ H010
+| |
+| +------------------------ H001
+| /----------15
+| | | /------------ H003
+| | \----------14
+| /-----------16 \------------ H005
+| | |
+| /----------17 \------------------------------------ H013
+| | |
+21 | \------------------------------------------------- H014
++----------19
+| | /------------ H007
+| | |
+| \-----------------------------------------------18------------ H012
+| |
+| \------------ H011
+|
+| /------------ H008
++-----------------------------------------------------------20
+| \------------ H006
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_19 13 1 0.500 1 ==> 0
+ node_19 --> node_17 9 1 0.500 1 ==> 2
+ 10 1 1.000 1 ==> 2
+ node_17 --> node_16 1 1 0.333 1 --> 2
+ 2 1 0.333 1 --> 2
+ 8 1 1.000 1 ==> 2
+ node_16 --> node_15 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_15 --> H010 5 1 1.000 2 ==> 1
+ node_15 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_15 --> node_14 3 1 1.000 2 ==> 1
+ node_14 --> H003 4 1 1.000 2 ==> 1
+ node_14 --> H005 12 1 0.333 2 ==> 1
+ node_19 --> node_18 1 1 0.333 1 --> 2
+ 2 1 0.333 1 --> 2
+ node_18 --> H007 12 1 0.333 2 ==> 1
+ node_18 --> H012 11 1 0.500 2 ==> 1
+ node_18 --> H011 13 1 0.500 0 ==> 1
+ node_21 --> node_20 11 1 0.500 2 ==> 1
+ node_20 --> H008 9 1 0.500 1 ==> 2
+ node_21 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 44 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #44 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 21 0 0 0
+ 20 21 1 1 1
+ 19 20 3 3 3
+ 18 19 1 1 1
+ 17 18 2 2 2
+ 16 17 1 1 1
+ 15 16 2 2 2
+H010 (2) 15 1 1 1
+H001 (7) 15 2 2 2
+ 14 15 1 1 1
+H003 (8) 14 1 1 1
+H005 (9) 14 1 1 1
+H013 (6) 16 0 0 0
+H014 (5) 17 2 2 2
+H007 (3) 18 1 1 1
+H011 (13) 18 1 1 1
+H012 (10) 19 0 0 0
+H008 (4) 20 1 1 1
+H006 (12) 20 0 0 0
+H009 (11) 21 1 1 1
+-------------------------------------------------------------------------
+Sum 22
+
+Tree length = 22
+Consistency index (CI) = 0.5909
+Homoplasy index (HI) = 0.4091
+CI excluding uninformative characters = 0.5500
+HI excluding uninformative characters = 0.4500
+Retention index (RI) = 0.7568
+Rescaled consistency index (RC) = 0.4472
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------ H010
+| |
+| +------------------ H001
+| /-------15
+| | | /--------- H003
+| | \-------14
+| /--------16 \--------- H005
+| | |
+| /-------17 \--------------------------- H013
+| | |
+21 | \------------------------------------- H014
+| /-------18
+| | +---------------------------------------------- H007
+| | |
+| /-------19 \---------------------------------------------- H011
+| | |
+| | \------------------------------------------------------- H012
++-------20
+| +---------------------------------------------------------------- H008
+| |
+| \---------------------------------------------------------------- H006
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_20 11 1 0.500 2 ==> 1
+ node_20 --> node_19 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ 13 1 0.500 1 ==> 0
+ node_19 --> node_18 11 1 0.500 1 ==> 2
+ node_18 --> node_17 9 1 0.500 1 ==> 2
+ 10 1 1.000 1 ==> 2
+ node_17 --> node_16 8 1 1.000 1 ==> 2
+ node_16 --> node_15 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_15 --> H010 5 1 1.000 2 ==> 1
+ node_15 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_15 --> node_14 3 1 1.000 2 ==> 1
+ node_14 --> H003 4 1 1.000 2 ==> 1
+ node_14 --> H005 12 1 0.333 2 ==> 1
+ node_17 --> H014 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_18 --> H007 12 1 0.333 2 ==> 1
+ node_18 --> H011 13 1 0.500 0 ==> 1
+ node_20 --> H008 9 1 0.500 1 ==> 2
+ node_21 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 45 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #45 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 20 0 0 0
+ 18 20 1 1 1
+ 17 18 1 1 2
+ 16 17 3 3 4
+ 15 16 2 2 2
+H010 (2) 15 1 1 1
+H001 (7) 15 2 2 2
+ 14 15 1 1 1
+H003 (8) 14 1 1 1
+H005 (9) 14 1 1 1
+H013 (6) 16 1 0 1
+H014 (5) 17 0 0 0
+H008 (4) 18 1 1 1
+ 19 20 2 2 3
+H007 (3) 19 2 1 2
+H012 (10) 19 2 1 2
+H011 (13) 19 0 0 1
+H009 (11) 20 1 1 1
+H006 (12) 20 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7297
+Rescaled consistency index (RC) = 0.4125
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------------ H010
+| |
+| +------------------------ H001
+| /----------15
+| | | /------------ H003
+| | \----------14
+| /-----------16 \------------ H005
+| | |
+| /----------17 \------------------------------------ H013
+| | |
+20---------18 \------------------------------------------------- H014
+| |
+| \------------------------------------------------------------- H008
+|
+| /------------ H007
+| |
++-----------------------------------------------------------19------------ H012
+| |
+| \------------ H011
+|
++------------------------------------------------------------------------- H009
+|
+\------------------------------------------------------------------------- H006
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_20 --> node_18 9 1 1.000 1 ==> 2
+ node_18 --> node_17 10 1 1.000 1 ==> 2
+ node_17 --> node_16 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ 8 1 1.000 1 ==> 2
+ node_16 --> node_15 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_15 --> H010 5 1 1.000 2 ==> 1
+ node_15 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_15 --> node_14 3 1 1.000 2 ==> 1
+ node_14 --> H003 4 1 1.000 2 ==> 1
+ node_14 --> H005 12 1 0.333 2 ==> 1
+ node_16 --> H013 13 1 0.333 1 --> 0
+ node_18 --> H008 11 1 0.333 2 ==> 1
+ node_20 --> node_19 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_19 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_19 --> H012 11 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_20 --> H009 12 1 0.333 2 ==> 1
+ node_20 --> H006 11 1 0.333 2 ==> 1
+
+Tree number 46 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #46 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 22 0 0 0
+ 21 22 0 0 1
+ 18 21 1 1 1
+ 17 18 1 1 3
+ 16 17 3 3 4
+ 15 16 2 2 2
+H010 (2) 15 1 1 1
+H001 (7) 15 2 2 2
+ 14 15 1 1 1
+H003 (8) 14 1 1 1
+H005 (9) 14 1 1 1
+H013 (6) 16 1 0 1
+H014 (5) 17 0 0 0
+H008 (4) 18 1 0 1
+ 20 21 2 2 3
+ 19 20 0 0 1
+H007 (3) 19 2 1 2
+H011 (13) 19 0 0 1
+H012 (10) 20 2 0 2
+H006 (12) 21 1 0 1
+H009 (11) 22 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7297
+Rescaled consistency index (RC) = 0.4125
+
+/------------------------------------------------------------------------- H002
+|
+| /--------------------- H010
+| |
+| +--------------------- H001
+| /--------15
+| | | /---------- H003
+| | \---------14
+| /---------16 \---------- H005
+| | |
+| /--------17 \------------------------------- H013
+| | |
+22 /---------18 \------------------------------------------ H014
+| | |
+| | \---------------------------------------------------- H008
+| |
+| | /---------- H007
++--------21 /---------19
+| | | \---------- H011
+| +----------------------------------------20
+| | \--------------------- H012
+| |
+| \--------------------------------------------------------------- H006
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_18 9 1 1.000 1 ==> 2
+ node_18 --> node_17 10 1 1.000 1 ==> 2
+ node_17 --> node_16 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ 8 1 1.000 1 ==> 2
+ node_16 --> node_15 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_15 --> H010 5 1 1.000 2 ==> 1
+ node_15 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_15 --> node_14 3 1 1.000 2 ==> 1
+ node_14 --> H003 4 1 1.000 2 ==> 1
+ node_14 --> H005 12 1 0.333 2 ==> 1
+ node_16 --> H013 13 1 0.333 1 --> 0
+ node_18 --> H008 11 1 0.333 2 --> 1
+ node_21 --> node_20 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_19 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_20 --> H012 11 1 0.333 2 --> 1
+ 13 1 0.333 1 --> 0
+ node_21 --> H006 11 1 0.333 2 --> 1
+ node_22 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 47 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #47 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 23 0 0 0
+ 22 23 0 0 1
+ 18 22 1 1 1
+ 17 18 1 1 3
+ 16 17 3 3 4
+ 15 16 2 2 2
+H010 (2) 15 1 1 1
+H001 (7) 15 2 2 2
+ 14 15 1 1 1
+H003 (8) 14 1 1 1
+H005 (9) 14 1 1 1
+H013 (6) 16 1 0 1
+H014 (5) 17 0 0 0
+H008 (4) 18 1 0 1
+ 21 22 0 0 1
+ 20 21 2 2 3
+ 19 20 0 0 1
+H007 (3) 19 2 1 2
+H011 (13) 19 0 0 1
+H012 (10) 20 2 0 2
+H006 (12) 21 1 0 1
+H009 (11) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7297
+Rescaled consistency index (RC) = 0.4125
+
+/------------------------------------------------------------------------- H002
+|
+| /--------------------- H010
+| |
+| +--------------------- H001
+| /--------15
+| | | /---------- H003
+| | \---------14
+| /---------16 \---------- H005
+| | |
+| /--------17 \------------------------------- H013
+| | |
+23 /---------18 \------------------------------------------ H014
+| | |
+| | \---------------------------------------------------- H008
+| |
+| | /---------- H007
++--------22 /---------19
+| | | \---------- H011
+| | /--------20
+| | | \--------------------- H012
+| \------------------------------21
+| \------------------------------- H006
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_18 9 1 1.000 1 ==> 2
+ node_18 --> node_17 10 1 1.000 1 ==> 2
+ node_17 --> node_16 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ 8 1 1.000 1 ==> 2
+ node_16 --> node_15 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_15 --> H010 5 1 1.000 2 ==> 1
+ node_15 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_15 --> node_14 3 1 1.000 2 ==> 1
+ node_14 --> H003 4 1 1.000 2 ==> 1
+ node_14 --> H005 12 1 0.333 2 ==> 1
+ node_16 --> H013 13 1 0.333 1 --> 0
+ node_18 --> H008 11 1 0.333 2 --> 1
+ node_21 --> node_20 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_19 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_20 --> H012 11 1 0.333 2 --> 1
+ 13 1 0.333 1 --> 0
+ node_21 --> H006 11 1 0.333 2 --> 1
+ node_23 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 48 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #48 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 22 0 0 0
+ 21 22 0 0 1
+ 19 21 0 0 3
+ 18 19 3 2 3
+ 16 18 3 1 3
+ 15 16 2 2 2
+H010 (2) 15 1 1 1
+H001 (7) 15 2 2 2
+ 14 15 1 1 1
+H003 (8) 14 1 1 1
+H005 (9) 14 1 1 1
+H013 (6) 16 0 0 0
+ 17 18 0 0 2
+H007 (3) 17 1 1 1
+H012 (10) 17 1 1 1
+H011 (13) 17 1 1 1
+H014 (5) 19 2 0 2
+ 20 21 1 1 1
+H008 (4) 20 1 0 1
+H006 (12) 20 0 0 1
+H009 (11) 22 1 1 1
+-------------------------------------------------------------------------
+Sum 22
+
+Tree length = 22
+Consistency index (CI) = 0.5909
+Homoplasy index (HI) = 0.4091
+CI excluding uninformative characters = 0.5500
+HI excluding uninformative characters = 0.4500
+Retention index (RI) = 0.7568
+Rescaled consistency index (RC) = 0.4472
+
+/------------------------------------------------------------------------- H002
+|
+| /--------------------- H010
+| |
+| +--------------------- H001
+| /--------15
+| | | /---------- H003
+| | \---------14
+| /---------16 \---------- H005
+| | |
+| | \------------------------------- H013
+| /--------18
+22 | | /---------- H007
+| | | |
+| | \------------------------------17---------- H012
+| /---------19 |
+| | | \---------- H011
+| | |
++--------21 \---------------------------------------------------- H014
+| |
+| | /---------- H008
+| \---------------------------------------------------20
+| \---------- H006
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_19 --> node_18 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ 13 1 0.500 1 --> 0
+ node_18 --> node_16 8 1 1.000 1 ==> 2
+ 9 1 0.333 1 --> 2
+ 10 1 0.500 1 --> 2
+ node_16 --> node_15 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_15 --> H010 5 1 1.000 2 ==> 1
+ node_15 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_15 --> node_14 3 1 1.000 2 ==> 1
+ node_14 --> H003 4 1 1.000 2 ==> 1
+ node_14 --> H005 12 1 0.333 2 ==> 1
+ node_17 --> H007 12 1 0.333 2 ==> 1
+ node_17 --> H012 11 1 0.500 2 ==> 1
+ node_17 --> H011 13 1 0.500 0 ==> 1
+ node_19 --> H014 9 1 0.333 1 --> 2
+ 10 1 0.500 1 --> 2
+ node_21 --> node_20 11 1 0.500 2 ==> 1
+ node_20 --> H008 9 1 0.333 1 --> 2
+ node_22 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 49 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #49 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 20 0 0 0
+ 19 20 1 1 1
+ 18 19 3 3 3
+ 17 18 1 1 1
+ 16 17 3 3 3
+ 15 16 2 2 2
+H010 (2) 15 1 1 1
+H001 (7) 15 2 2 2
+ 14 15 1 1 1
+H003 (8) 14 1 1 1
+H005 (9) 14 1 1 1
+H013 (6) 16 0 0 0
+H007 (3) 17 1 1 1
+H011 (13) 17 1 1 1
+H012 (10) 18 0 0 0
+H008 (4) 19 1 1 1
+H006 (12) 19 0 0 0
+H014 (5) 20 2 2 2
+H009 (11) 20 1 1 1
+-------------------------------------------------------------------------
+Sum 22
+
+Tree length = 22
+Consistency index (CI) = 0.5909
+Homoplasy index (HI) = 0.4091
+CI excluding uninformative characters = 0.5500
+HI excluding uninformative characters = 0.4500
+Retention index (RI) = 0.7568
+Rescaled consistency index (RC) = 0.4472
+
+/------------------------------------------------------------------------- H002
+|
+| /--------------------- H010
+| |
+| +--------------------- H001
+| /--------15
+| | | /---------- H003
+| | \---------14
+| /---------16 \---------- H005
+| | |
+| | \------------------------------- H013
+| /--------17
+20 | +------------------------------------------ H007
+| | |
+| /---------18 \------------------------------------------ H011
+| | |
+| | \---------------------------------------------------- H012
++--------19
+| +--------------------------------------------------------------- H008
+| |
+| \--------------------------------------------------------------- H006
+|
++------------------------------------------------------------------------- H014
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_20 --> node_19 11 1 0.500 2 ==> 1
+ node_19 --> node_18 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ 13 1 0.500 1 ==> 0
+ node_18 --> node_17 11 1 0.500 1 ==> 2
+ node_17 --> node_16 8 1 1.000 1 ==> 2
+ 9 1 0.333 1 ==> 2
+ 10 1 0.500 1 ==> 2
+ node_16 --> node_15 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_15 --> H010 5 1 1.000 2 ==> 1
+ node_15 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_15 --> node_14 3 1 1.000 2 ==> 1
+ node_14 --> H003 4 1 1.000 2 ==> 1
+ node_14 --> H005 12 1 0.333 2 ==> 1
+ node_17 --> H007 12 1 0.333 2 ==> 1
+ node_17 --> H011 13 1 0.500 0 ==> 1
+ node_19 --> H008 9 1 0.333 1 ==> 2
+ node_20 --> H014 9 1 0.333 1 ==> 2
+ 10 1 0.500 1 ==> 2
+ node_20 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 50 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #50 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 21 0 0 0
+ 19 21 0 0 1
+ 17 19 2 1 3
+ 16 17 3 3 4
+ 15 16 2 2 2
+H010 (2) 15 1 1 1
+H001 (7) 15 2 2 2
+ 14 15 1 1 1
+H003 (8) 14 1 1 1
+H005 (9) 14 1 1 1
+H013 (6) 16 0 0 1
+H014 (5) 17 0 0 0
+ 18 19 2 1 2
+H008 (4) 18 1 0 1
+H006 (12) 18 0 0 1
+ 20 21 2 2 3
+H007 (3) 20 1 1 2
+H012 (10) 20 1 1 2
+H011 (13) 20 1 0 1
+H009 (11) 21 2 1 2
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7297
+Rescaled consistency index (RC) = 0.4125
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------------ H010
+| |
+| +------------------------ H001
+| /----------15
+| | | /------------ H003
+| | \----------14
+| /-----------16 \------------ H005
+| | |
+| /----------17 \------------------------------------ H013
+| | |
+21 | \------------------------------------------------- H014
++----------19
+| | /------------ H008
+| \-----------------------------------------------18
+| \------------ H006
+|
+| /------------ H007
+| |
++-----------------------------------------------------------20------------ H012
+| |
+| \------------ H011
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_19 --> node_17 9 1 0.500 1 --> 2
+ 10 1 1.000 1 ==> 2
+ node_17 --> node_16 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ 8 1 1.000 1 ==> 2
+ node_16 --> node_15 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_15 --> H010 5 1 1.000 2 ==> 1
+ node_15 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_15 --> node_14 3 1 1.000 2 ==> 1
+ node_14 --> H003 4 1 1.000 2 ==> 1
+ node_14 --> H005 12 1 0.333 2 ==> 1
+ node_19 --> node_18 11 1 0.500 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_18 --> H008 9 1 0.500 1 --> 2
+ node_21 --> node_20 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_20 --> H007 12 1 0.333 2 ==> 1
+ node_20 --> H012 11 1 0.500 2 ==> 1
+ node_20 --> H011 13 1 0.333 0 --> 1
+ node_21 --> H009 12 1 0.333 2 ==> 1
+ 13 1 0.333 0 --> 1
+
+Tree number 51 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #51 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 21 0 0 0
+ 19 21 0 0 1
+ 17 19 2 1 3
+ 16 17 3 3 4
+ 15 16 2 2 3
+H010 (2) 15 1 1 1
+H013 (6) 15 2 2 3
+ 14 15 1 1 1
+H003 (8) 14 1 1 1
+H005 (9) 14 1 1 1
+H001 (7) 16 0 0 0
+H014 (5) 17 0 0 0
+ 18 19 2 1 2
+H008 (4) 18 1 0 1
+H006 (12) 18 0 0 1
+ 20 21 2 2 3
+H007 (3) 20 1 1 2
+H012 (10) 20 1 1 2
+H011 (13) 20 1 0 1
+H009 (11) 21 2 1 2
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7297
+Rescaled consistency index (RC) = 0.4125
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------------ H010
+| |
+| +------------------------ H013
+| /----------15
+| | | /------------ H003
+| | \----------14
+| /-----------16 \------------ H005
+| | |
+| /----------17 \------------------------------------ H001
+| | |
+21 | \------------------------------------------------- H014
++----------19
+| | /------------ H008
+| \-----------------------------------------------18
+| \------------ H006
+|
+| /------------ H007
+| |
++-----------------------------------------------------------20------------ H012
+| |
+| \------------ H011
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_19 --> node_17 9 1 0.500 1 --> 2
+ 10 1 1.000 1 ==> 2
+ node_17 --> node_16 6 1 0.500 1 ==> 2
+ 7 1 0.500 1 ==> 2
+ 8 1 1.000 1 ==> 2
+ node_16 --> node_15 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_15 --> H010 5 1 1.000 2 ==> 1
+ node_15 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ node_15 --> node_14 3 1 1.000 2 ==> 1
+ node_14 --> H003 4 1 1.000 2 ==> 1
+ node_14 --> H005 12 1 0.333 2 ==> 1
+ node_19 --> node_18 11 1 0.500 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_18 --> H008 9 1 0.500 1 --> 2
+ node_21 --> node_20 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_20 --> H007 12 1 0.333 2 ==> 1
+ node_20 --> H012 11 1 0.500 2 ==> 1
+ node_20 --> H011 13 1 0.333 0 --> 1
+ node_21 --> H009 12 1 0.333 2 ==> 1
+ 13 1 0.333 0 --> 1
+
+Tree number 52 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #52 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 23 0 0 0
+ 22 23 0 0 1
+ 18 22 1 1 1
+ 17 18 1 1 3
+ 16 17 3 3 4
+ 15 16 2 2 3
+H010 (2) 15 1 1 1
+H013 (6) 15 3 2 3
+ 14 15 1 1 1
+H003 (8) 14 1 1 1
+H005 (9) 14 1 1 1
+H001 (7) 16 0 0 0
+H014 (5) 17 0 0 0
+H008 (4) 18 1 0 1
+ 21 22 0 0 1
+ 20 21 2 2 3
+ 19 20 0 0 1
+H007 (3) 19 2 1 2
+H011 (13) 19 0 0 1
+H012 (10) 20 2 0 2
+H006 (12) 21 1 0 1
+H009 (11) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7297
+Rescaled consistency index (RC) = 0.4125
+
+/------------------------------------------------------------------------- H002
+|
+| /--------------------- H010
+| |
+| +--------------------- H013
+| /--------15
+| | | /---------- H003
+| | \---------14
+| /---------16 \---------- H005
+| | |
+| /--------17 \------------------------------- H001
+| | |
+23 /---------18 \------------------------------------------ H014
+| | |
+| | \---------------------------------------------------- H008
+| |
+| | /---------- H007
++--------22 /---------19
+| | | \---------- H011
+| | /--------20
+| | | \--------------------- H012
+| \------------------------------21
+| \------------------------------- H006
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_18 9 1 1.000 1 ==> 2
+ node_18 --> node_17 10 1 1.000 1 ==> 2
+ node_17 --> node_16 6 1 0.500 1 ==> 2
+ 7 1 0.500 1 ==> 2
+ 8 1 1.000 1 ==> 2
+ node_16 --> node_15 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_15 --> H010 5 1 1.000 2 ==> 1
+ node_15 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_15 --> node_14 3 1 1.000 2 ==> 1
+ node_14 --> H003 4 1 1.000 2 ==> 1
+ node_14 --> H005 12 1 0.333 2 ==> 1
+ node_18 --> H008 11 1 0.333 2 --> 1
+ node_21 --> node_20 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_19 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_20 --> H012 11 1 0.333 2 --> 1
+ 13 1 0.333 1 --> 0
+ node_21 --> H006 11 1 0.333 2 --> 1
+ node_23 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 53 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #53 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 22 0 0 0
+ 20 22 0 0 1
+ 18 20 2 1 3
+ 17 18 1 1 4
+ 16 17 2 2 3
+ 15 16 2 0 2
+H010 (2) 15 1 1 1
+ 14 15 1 1 1
+H003 (8) 14 1 1 1
+H005 (9) 14 1 1 1
+H013 (6) 16 0 0 3
+H001 (7) 17 2 0 2
+H014 (5) 18 0 0 0
+ 19 20 2 1 2
+H008 (4) 19 1 0 1
+H006 (12) 19 0 0 1
+ 21 22 2 2 3
+H007 (3) 21 1 1 2
+H012 (10) 21 1 1 2
+H011 (13) 21 1 0 1
+H009 (11) 22 2 1 2
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7297
+Rescaled consistency index (RC) = 0.4125
+
+/------------------------------------------------------------------------- H002
+|
+| /--------------------- H010
+| |
+| /--------15 /---------- H003
+| | \---------14
+| /---------16 \---------- H005
+| | |
+| /--------17 \------------------------------- H013
+| | |
+| /---------18 \------------------------------------------ H001
+| | |
+22 | \---------------------------------------------------- H014
++--------20
+| | /---------- H008
+| \---------------------------------------------------19
+| \---------- H006
+|
+| /---------- H007
+| |
++-------------------------------------------------------------21---------- H012
+| |
+| \---------- H011
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_20 --> node_18 9 1 0.500 1 --> 2
+ 10 1 1.000 1 ==> 2
+ node_18 --> node_17 8 1 1.000 1 ==> 2
+ node_17 --> node_16 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_16 --> node_15 6 1 0.500 1 --> 2
+ 7 1 0.500 1 --> 2
+ node_15 --> H010 5 1 1.000 2 ==> 1
+ node_15 --> node_14 3 1 1.000 2 ==> 1
+ node_14 --> H003 4 1 1.000 2 ==> 1
+ node_14 --> H005 12 1 0.333 2 ==> 1
+ node_17 --> H001 6 1 0.500 1 --> 2
+ 7 1 0.500 1 --> 2
+ node_20 --> node_19 11 1 0.500 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_19 --> H008 9 1 0.500 1 --> 2
+ node_22 --> node_21 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_21 --> H007 12 1 0.333 2 ==> 1
+ node_21 --> H012 11 1 0.500 2 ==> 1
+ node_21 --> H011 13 1 0.333 0 --> 1
+ node_22 --> H009 12 1 0.333 2 ==> 1
+ 13 1 0.333 0 --> 1
+
+Tree number 54 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #54 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 21 0 0 0
+ 18 21 2 2 3
+ 17 18 1 1 4
+ 16 17 2 2 3
+ 15 16 2 0 2
+H010 (2) 15 1 1 1
+ 14 15 1 1 1
+H003 (8) 14 1 1 1
+H005 (9) 14 1 1 1
+H013 (6) 16 0 0 3
+H001 (7) 17 2 0 2
+H014 (5) 18 0 0 0
+ 19 21 2 2 3
+H007 (3) 19 1 1 2
+H012 (10) 19 1 1 2
+H011 (13) 19 1 0 1
+ 20 21 2 1 2
+H008 (4) 20 1 1 1
+H006 (12) 20 0 0 0
+H009 (11) 21 2 1 2
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7297
+Rescaled consistency index (RC) = 0.4125
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------------ H010
+| |
+| /----------15 /------------ H003
+| | \----------14
+| /-----------16 \------------ H005
+| | |
+| /----------17 \------------------------------------ H013
+| | |
++----------18 \------------------------------------------------- H001
+| |
+21 \------------------------------------------------------------- H014
+|
+| /------------ H007
+| |
++-----------------------------------------------------------19------------ H012
+| |
+| \------------ H011
+|
+| /------------ H008
++-----------------------------------------------------------20
+| \------------ H006
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_18 9 1 0.500 1 ==> 2
+ 10 1 1.000 1 ==> 2
+ node_18 --> node_17 8 1 1.000 1 ==> 2
+ node_17 --> node_16 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_16 --> node_15 6 1 0.500 1 --> 2
+ 7 1 0.500 1 --> 2
+ node_15 --> H010 5 1 1.000 2 ==> 1
+ node_15 --> node_14 3 1 1.000 2 ==> 1
+ node_14 --> H003 4 1 1.000 2 ==> 1
+ node_14 --> H005 12 1 0.333 2 ==> 1
+ node_17 --> H001 6 1 0.500 1 --> 2
+ 7 1 0.500 1 --> 2
+ node_21 --> node_19 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_19 --> H007 12 1 0.333 2 ==> 1
+ node_19 --> H012 11 1 0.500 2 ==> 1
+ node_19 --> H011 13 1 0.333 0 --> 1
+ node_21 --> node_20 11 1 0.500 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_20 --> H008 9 1 0.500 1 ==> 2
+ node_21 --> H009 12 1 0.333 2 ==> 1
+ 13 1 0.333 0 --> 1
+
+Tree number 55 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #55 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 23 0 0 0
+ 19 23 1 1 1
+ 18 19 1 1 2
+ 17 18 1 1 4
+ 16 17 2 2 3
+ 15 16 2 0 2
+H010 (2) 15 1 1 1
+ 14 15 1 1 1
+H003 (8) 14 1 1 1
+H005 (9) 14 1 1 1
+H013 (6) 16 1 0 3
+H001 (7) 17 2 0 2
+H014 (5) 18 0 0 0
+H008 (4) 19 1 1 1
+ 22 23 0 0 1
+ 21 22 2 2 3
+H007 (3) 21 2 0 2
+ 20 21 0 0 1
+H012 (10) 20 2 1 2
+H011 (13) 20 0 0 1
+H009 (11) 22 1 0 1
+H006 (12) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7297
+Rescaled consistency index (RC) = 0.4125
+
+/------------------------------------------------------------------------- H002
+|
+| /--------------------- H010
+| |
+| /--------15 /---------- H003
+| | \---------14
+| /---------16 \---------- H005
+| | |
+| /--------17 \------------------------------- H013
+| | |
+| /---------18 \------------------------------------------ H001
+| | |
+23-------19 \---------------------------------------------------- H014
+| |
+| \--------------------------------------------------------------- H008
+|
+| /--------------------- H007
+| |
+| /--------21 /---------- H012
+| | \---------20
++----------------------------------------22 \---------- H011
+| |
+| \------------------------------- H009
+|
+\------------------------------------------------------------------------- H006
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_19 9 1 1.000 1 ==> 2
+ node_19 --> node_18 10 1 1.000 1 ==> 2
+ node_18 --> node_17 8 1 1.000 1 ==> 2
+ node_17 --> node_16 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_16 --> node_15 6 1 0.500 1 --> 2
+ 7 1 0.500 1 --> 2
+ node_15 --> H010 5 1 1.000 2 ==> 1
+ node_15 --> node_14 3 1 1.000 2 ==> 1
+ node_14 --> H003 4 1 1.000 2 ==> 1
+ node_14 --> H005 12 1 0.333 2 ==> 1
+ node_16 --> H013 13 1 0.333 1 --> 0
+ node_17 --> H001 6 1 0.500 1 --> 2
+ 7 1 0.500 1 --> 2
+ node_19 --> H008 11 1 0.333 2 ==> 1
+ node_22 --> node_21 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_21 --> H007 12 1 0.333 2 --> 1
+ 13 1 0.333 1 --> 0
+ node_20 --> H012 11 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_22 --> H009 12 1 0.333 2 --> 1
+ node_23 --> H006 11 1 0.333 2 ==> 1
+
+Tree number 56 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #56 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 23 0 0 0
+ 19 23 1 1 1
+ 18 19 1 1 2
+ 17 18 1 1 4
+ 16 17 2 2 3
+ 15 16 2 0 2
+H010 (2) 15 1 1 1
+ 14 15 1 1 1
+H003 (8) 14 1 1 1
+H005 (9) 14 1 1 1
+H013 (6) 16 1 0 3
+H001 (7) 17 2 0 2
+H014 (5) 18 0 0 0
+H008 (4) 19 1 1 1
+ 22 23 0 0 1
+ 21 22 2 2 3
+ 20 21 0 0 1
+H007 (3) 20 2 1 2
+H011 (13) 20 0 0 1
+H012 (10) 21 2 0 2
+H006 (12) 22 1 0 1
+H009 (11) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7297
+Rescaled consistency index (RC) = 0.4125
+
+/------------------------------------------------------------------------- H002
+|
+| /--------------------- H010
+| |
+| /--------15 /---------- H003
+| | \---------14
+| /---------16 \---------- H005
+| | |
+| /--------17 \------------------------------- H013
+| | |
+| /---------18 \------------------------------------------ H001
+| | |
+23-------19 \---------------------------------------------------- H014
+| |
+| \--------------------------------------------------------------- H008
+|
+| /---------- H007
+| /---------20
+| | \---------- H011
+| /--------21
+| | \--------------------- H012
++----------------------------------------22
+| \------------------------------- H006
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_19 9 1 1.000 1 ==> 2
+ node_19 --> node_18 10 1 1.000 1 ==> 2
+ node_18 --> node_17 8 1 1.000 1 ==> 2
+ node_17 --> node_16 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_16 --> node_15 6 1 0.500 1 --> 2
+ 7 1 0.500 1 --> 2
+ node_15 --> H010 5 1 1.000 2 ==> 1
+ node_15 --> node_14 3 1 1.000 2 ==> 1
+ node_14 --> H003 4 1 1.000 2 ==> 1
+ node_14 --> H005 12 1 0.333 2 ==> 1
+ node_16 --> H013 13 1 0.333 1 --> 0
+ node_17 --> H001 6 1 0.500 1 --> 2
+ 7 1 0.500 1 --> 2
+ node_19 --> H008 11 1 0.333 2 ==> 1
+ node_22 --> node_21 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_20 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_21 --> H012 11 1 0.333 2 --> 1
+ 13 1 0.333 1 --> 0
+ node_22 --> H006 11 1 0.333 2 --> 1
+ node_23 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 57 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #57 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 20 0 0 0
+ 18 20 1 1 1
+ 17 18 1 1 2
+ 16 17 3 3 4
+ 15 16 2 2 3
+H010 (2) 15 1 1 1
+H013 (6) 15 3 2 3
+ 14 15 1 1 1
+H003 (8) 14 1 1 1
+H005 (9) 14 1 1 1
+H001 (7) 16 0 0 0
+H014 (5) 17 0 0 0
+H008 (4) 18 1 1 1
+ 19 20 2 2 3
+H007 (3) 19 2 1 2
+H012 (10) 19 2 1 2
+H011 (13) 19 0 0 1
+H009 (11) 20 1 1 1
+H006 (12) 20 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7297
+Rescaled consistency index (RC) = 0.4125
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------------ H010
+| |
+| +------------------------ H013
+| /----------15
+| | | /------------ H003
+| | \----------14
+| /-----------16 \------------ H005
+| | |
+| /----------17 \------------------------------------ H001
+| | |
+20---------18 \------------------------------------------------- H014
+| |
+| \------------------------------------------------------------- H008
+|
+| /------------ H007
+| |
++-----------------------------------------------------------19------------ H012
+| |
+| \------------ H011
+|
++------------------------------------------------------------------------- H009
+|
+\------------------------------------------------------------------------- H006
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_20 --> node_18 9 1 1.000 1 ==> 2
+ node_18 --> node_17 10 1 1.000 1 ==> 2
+ node_17 --> node_16 6 1 0.500 1 ==> 2
+ 7 1 0.500 1 ==> 2
+ 8 1 1.000 1 ==> 2
+ node_16 --> node_15 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_15 --> H010 5 1 1.000 2 ==> 1
+ node_15 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_15 --> node_14 3 1 1.000 2 ==> 1
+ node_14 --> H003 4 1 1.000 2 ==> 1
+ node_14 --> H005 12 1 0.333 2 ==> 1
+ node_18 --> H008 11 1 0.333 2 ==> 1
+ node_20 --> node_19 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_19 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_19 --> H012 11 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_20 --> H009 12 1 0.333 2 ==> 1
+ node_20 --> H006 11 1 0.333 2 ==> 1
+
+Tree number 58 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #58 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 23 0 0 0
+ 18 23 2 2 3
+ 17 18 1 1 4
+ 16 17 2 2 2
+ 15 16 2 0 2
+H010 (2) 15 1 1 1
+ 14 15 1 1 1
+H003 (8) 14 1 1 1
+H005 (9) 14 1 1 1
+H001 (7) 16 0 0 2
+H013 (6) 17 2 0 3
+H014 (5) 18 0 0 0
+ 21 23 0 0 1
+ 20 21 2 2 3
+H007 (3) 20 1 0 2
+ 19 20 0 0 1
+H012 (10) 19 1 1 2
+H011 (13) 19 1 0 1
+H009 (11) 21 2 0 2
+ 22 23 2 1 2
+H008 (4) 22 1 1 1
+H006 (12) 22 0 0 0
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7297
+Rescaled consistency index (RC) = 0.4125
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------------ H010
+| |
+| /----------15 /------------ H003
+| | \----------14
+| /-----------16 \------------ H005
+| | |
+| /----------17 \------------------------------------ H001
+| | |
++----------18 \------------------------------------------------- H013
+| |
+23 \------------------------------------------------------------- H014
+|
+| /------------------------ H007
+| |
+| /----------20 /------------ H012
+| | \----------19
++-----------------------------------21 \------------ H011
+| |
+| \------------------------------------ H009
+|
+| /------------ H008
+\-----------------------------------------------------------22
+ \------------ H006
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_18 9 1 0.500 1 ==> 2
+ 10 1 1.000 1 ==> 2
+ node_18 --> node_17 8 1 1.000 1 ==> 2
+ node_17 --> node_16 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_16 --> node_15 1 1 0.333 1 --> 2
+ 2 1 0.333 1 --> 2
+ node_15 --> H010 5 1 1.000 2 ==> 1
+ node_15 --> node_14 3 1 1.000 2 ==> 1
+ node_14 --> H003 4 1 1.000 2 ==> 1
+ node_14 --> H005 12 1 0.333 2 ==> 1
+ node_17 --> H013 1 1 0.333 1 --> 2
+ 2 1 0.333 1 --> 2
+ node_21 --> node_20 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_20 --> H007 12 1 0.333 2 --> 1
+ node_19 --> H012 11 1 0.500 2 ==> 1
+ node_19 --> H011 13 1 0.333 0 --> 1
+ node_21 --> H009 12 1 0.333 2 --> 1
+ 13 1 0.333 0 --> 1
+ node_23 --> node_22 11 1 0.500 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_22 --> H008 9 1 0.500 1 ==> 2
+
+Tree number 59 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #59 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 24 0 0 0
+ 20 24 0 0 1
+ 18 20 2 1 3
+ 17 18 1 1 4
+ 16 17 2 2 2
+ 15 16 2 0 2
+H010 (2) 15 1 1 1
+ 14 15 1 1 1
+H003 (8) 14 1 1 1
+H005 (9) 14 1 1 1
+H001 (7) 16 0 0 2
+H013 (6) 17 2 0 3
+H014 (5) 18 0 0 0
+ 19 20 2 1 2
+H008 (4) 19 1 0 1
+H006 (12) 19 0 0 1
+ 23 24 0 0 1
+ 22 23 2 2 3
+H007 (3) 22 1 0 2
+ 21 22 0 0 1
+H012 (10) 21 1 1 2
+H011 (13) 21 1 0 1
+H009 (11) 23 2 0 2
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7297
+Rescaled consistency index (RC) = 0.4125
+
+/------------------------------------------------------------------------- H002
+|
+| /--------------------- H010
+| |
+| /--------15 /---------- H003
+| | \---------14
+| /---------16 \---------- H005
+| | |
+| /--------17 \------------------------------- H001
+| | |
+| /---------18 \------------------------------------------ H013
+24 | |
+| | \---------------------------------------------------- H014
++--------20
+| | /---------- H008
+| \---------------------------------------------------19
+| \---------- H006
+|
+| /--------------------- H007
+| |
+| /--------22 /---------- H012
+| | \---------21
+\----------------------------------------23 \---------- H011
+ |
+ \------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_20 --> node_18 9 1 0.500 1 --> 2
+ 10 1 1.000 1 ==> 2
+ node_18 --> node_17 8 1 1.000 1 ==> 2
+ node_17 --> node_16 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_16 --> node_15 1 1 0.333 1 --> 2
+ 2 1 0.333 1 --> 2
+ node_15 --> H010 5 1 1.000 2 ==> 1
+ node_15 --> node_14 3 1 1.000 2 ==> 1
+ node_14 --> H003 4 1 1.000 2 ==> 1
+ node_14 --> H005 12 1 0.333 2 ==> 1
+ node_17 --> H013 1 1 0.333 1 --> 2
+ 2 1 0.333 1 --> 2
+ node_20 --> node_19 11 1 0.500 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_19 --> H008 9 1 0.500 1 --> 2
+ node_23 --> node_22 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_22 --> H007 12 1 0.333 2 --> 1
+ node_21 --> H012 11 1 0.500 2 ==> 1
+ node_21 --> H011 13 1 0.333 0 --> 1
+ node_23 --> H009 12 1 0.333 2 --> 1
+ 13 1 0.333 0 --> 1
+
+Tree number 60 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #60 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 22 0 0 0
+ 17 22 2 2 3
+ 16 17 3 3 4
+ 15 16 2 2 3
+H010 (2) 15 1 1 1
+H013 (6) 15 2 2 3
+ 14 15 1 1 1
+H003 (8) 14 1 1 1
+H005 (9) 14 1 1 1
+H001 (7) 16 0 0 0
+H014 (5) 17 0 0 0
+ 20 22 0 0 1
+ 19 20 2 2 3
+H007 (3) 19 1 0 2
+ 18 19 0 0 1
+H012 (10) 18 1 1 2
+H011 (13) 18 1 0 1
+H009 (11) 20 2 0 2
+ 21 22 2 1 2
+H008 (4) 21 1 1 1
+H006 (12) 21 0 0 0
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7297
+Rescaled consistency index (RC) = 0.4125
+
+/------------------------------------------------------------------------- H002
+|
+| /----------------------------- H010
+| |
+| +----------------------------- H013
+| /-------------15
+| | | /--------------- H003
+| | \------------14
+| /------------16 \--------------- H005
+| | |
++-------------17 \-------------------------------------------- H001
+| |
+22 \---------------------------------------------------------- H014
+|
+| /----------------------------- H007
+| |
+| /-------------19 /--------------- H012
+| | \------------18
++---------------------------20 \--------------- H011
+| |
+| \-------------------------------------------- H009
+|
+| /--------------- H008
+\--------------------------------------------------------21
+ \--------------- H006
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_17 9 1 0.500 1 ==> 2
+ 10 1 1.000 1 ==> 2
+ node_17 --> node_16 6 1 0.500 1 ==> 2
+ 7 1 0.500 1 ==> 2
+ 8 1 1.000 1 ==> 2
+ node_16 --> node_15 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_15 --> H010 5 1 1.000 2 ==> 1
+ node_15 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ node_15 --> node_14 3 1 1.000 2 ==> 1
+ node_14 --> H003 4 1 1.000 2 ==> 1
+ node_14 --> H005 12 1 0.333 2 ==> 1
+ node_20 --> node_19 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_19 --> H007 12 1 0.333 2 --> 1
+ node_18 --> H012 11 1 0.500 2 ==> 1
+ node_18 --> H011 13 1 0.333 0 --> 1
+ node_20 --> H009 12 1 0.333 2 --> 1
+ 13 1 0.333 0 --> 1
+ node_22 --> node_21 11 1 0.500 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_21 --> H008 9 1 0.500 1 ==> 2
+
+Tree number 61 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #61 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 23 0 0 0
+ 19 23 1 1 1
+ 18 19 1 1 2
+ 17 18 1 1 4
+ 16 17 2 2 2
+ 15 16 2 0 2
+H010 (2) 15 1 1 1
+ 14 15 1 1 1
+H003 (8) 14 1 1 1
+H005 (9) 14 1 1 1
+H001 (7) 16 0 0 2
+H013 (6) 17 3 0 3
+H014 (5) 18 0 0 0
+H008 (4) 19 1 1 1
+ 22 23 0 0 1
+ 21 22 2 2 3
+H007 (3) 21 2 0 2
+ 20 21 0 0 1
+H012 (10) 20 2 1 2
+H011 (13) 20 0 0 1
+H009 (11) 22 1 0 1
+H006 (12) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7297
+Rescaled consistency index (RC) = 0.4125
+
+/------------------------------------------------------------------------- H002
+|
+| /--------------------- H010
+| |
+| /--------15 /---------- H003
+| | \---------14
+| /---------16 \---------- H005
+| | |
+| /--------17 \------------------------------- H001
+| | |
+| /---------18 \------------------------------------------ H013
+| | |
+23-------19 \---------------------------------------------------- H014
+| |
+| \--------------------------------------------------------------- H008
+|
+| /--------------------- H007
+| |
+| /--------21 /---------- H012
+| | \---------20
++----------------------------------------22 \---------- H011
+| |
+| \------------------------------- H009
+|
+\------------------------------------------------------------------------- H006
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_19 9 1 1.000 1 ==> 2
+ node_19 --> node_18 10 1 1.000 1 ==> 2
+ node_18 --> node_17 8 1 1.000 1 ==> 2
+ node_17 --> node_16 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_16 --> node_15 1 1 0.333 1 --> 2
+ 2 1 0.333 1 --> 2
+ node_15 --> H010 5 1 1.000 2 ==> 1
+ node_15 --> node_14 3 1 1.000 2 ==> 1
+ node_14 --> H003 4 1 1.000 2 ==> 1
+ node_14 --> H005 12 1 0.333 2 ==> 1
+ node_17 --> H013 1 1 0.333 1 --> 2
+ 2 1 0.333 1 --> 2
+ 13 1 0.333 1 --> 0
+ node_19 --> H008 11 1 0.333 2 ==> 1
+ node_22 --> node_21 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_21 --> H007 12 1 0.333 2 --> 1
+ 13 1 0.333 1 --> 0
+ node_20 --> H012 11 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_22 --> H009 12 1 0.333 2 --> 1
+ node_23 --> H006 11 1 0.333 2 ==> 1
+
+Tree number 62 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #62 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 23 0 0 0
+ 18 23 2 2 3
+ 17 18 1 1 4
+ 16 17 2 2 2
+ 15 16 2 0 2
+H010 (2) 15 1 1 1
+ 14 15 1 1 1
+H003 (8) 14 1 1 1
+H005 (9) 14 1 1 1
+H001 (7) 16 0 0 2
+H013 (6) 17 2 0 3
+H014 (5) 18 0 0 0
+ 22 23 0 0 1
+ 20 22 2 2 3
+ 19 20 0 0 1
+H007 (3) 19 1 1 2
+H011 (13) 19 1 0 1
+H012 (10) 20 1 0 2
+ 21 22 2 0 2
+H008 (4) 21 1 1 1
+H006 (12) 21 0 0 0
+H009 (11) 23 2 1 2
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7297
+Rescaled consistency index (RC) = 0.4125
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------------ H010
+| |
+| /----------15 /------------ H003
+| | \----------14
+| /-----------16 \------------ H005
+| | |
+| /----------17 \------------------------------------ H001
+| | |
++----------18 \------------------------------------------------- H013
+| |
+23 \------------------------------------------------------------- H014
+|
+| /------------ H007
+| /----------19
+| | \------------ H011
+| /----------20
+| | \------------------------ H012
++-----------------------------------22
+| | /------------ H008
+| \----------------------21
+| \------------ H006
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_18 9 1 0.500 1 ==> 2
+ 10 1 1.000 1 ==> 2
+ node_18 --> node_17 8 1 1.000 1 ==> 2
+ node_17 --> node_16 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_16 --> node_15 1 1 0.333 1 --> 2
+ 2 1 0.333 1 --> 2
+ node_15 --> H010 5 1 1.000 2 ==> 1
+ node_15 --> node_14 3 1 1.000 2 ==> 1
+ node_14 --> H003 4 1 1.000 2 ==> 1
+ node_14 --> H005 12 1 0.333 2 ==> 1
+ node_17 --> H013 1 1 0.333 1 --> 2
+ 2 1 0.333 1 --> 2
+ node_22 --> node_20 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_19 --> H007 12 1 0.333 2 ==> 1
+ node_19 --> H011 13 1 0.333 0 --> 1
+ node_20 --> H012 11 1 0.500 2 --> 1
+ node_22 --> node_21 11 1 0.500 2 --> 1
+ 13 1 0.333 0 --> 1
+ node_21 --> H008 9 1 0.500 1 ==> 2
+ node_23 --> H009 12 1 0.333 2 ==> 1
+ 13 1 0.333 0 --> 1
+
+Tree number 63 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #63 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 22 0 0 0
+ 18 22 2 2 3
+ 17 18 1 1 4
+ 16 17 2 2 2
+ 15 16 2 0 2
+H010 (2) 15 1 1 1
+ 14 15 1 1 1
+H003 (8) 14 1 1 1
+H005 (9) 14 1 1 1
+H001 (7) 16 0 0 2
+H013 (6) 17 3 0 3
+H014 (5) 18 0 0 0
+ 21 22 1 1 1
+ 20 21 2 2 3
+ 19 20 1 1 1
+H007 (3) 19 2 1 2
+H011 (13) 19 0 0 1
+H012 (10) 20 1 0 1
+H008 (4) 21 1 1 1
+H006 (12) 21 0 0 0
+H009 (11) 22 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7297
+Rescaled consistency index (RC) = 0.4125
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------------ H010
+| |
+| /----------15 /------------ H003
+| | \----------14
+| /-----------16 \------------ H005
+| | |
+| /----------17 \------------------------------------ H001
+| | |
++----------18 \------------------------------------------------- H013
+| |
+22 \------------------------------------------------------------- H014
+|
+| /------------ H007
+| /----------19
+| | \------------ H011
+| /----------20
+| | \------------------------ H012
+| |
++-----------------------------------21------------------------------------ H008
+| |
+| \------------------------------------ H006
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_18 9 1 0.500 1 ==> 2
+ 10 1 1.000 1 ==> 2
+ node_18 --> node_17 8 1 1.000 1 ==> 2
+ node_17 --> node_16 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_16 --> node_15 1 1 0.333 1 --> 2
+ 2 1 0.333 1 --> 2
+ node_15 --> H010 5 1 1.000 2 ==> 1
+ node_15 --> node_14 3 1 1.000 2 ==> 1
+ node_14 --> H003 4 1 1.000 2 ==> 1
+ node_14 --> H005 12 1 0.333 2 ==> 1
+ node_17 --> H013 1 1 0.333 1 --> 2
+ 2 1 0.333 1 --> 2
+ 13 1 0.333 1 --> 0
+ node_22 --> node_21 11 1 0.500 2 ==> 1
+ node_21 --> node_20 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_20 --> node_19 11 1 0.500 1 ==> 2
+ node_19 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_20 --> H012 13 1 0.333 1 --> 0
+ node_21 --> H008 9 1 0.500 1 ==> 2
+ node_22 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 64 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #64 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 23 0 0 0
+ 18 23 2 2 3
+ 17 18 1 1 4
+ 16 17 2 2 3
+ 15 16 2 0 2
+H010 (2) 15 1 1 1
+ 14 15 1 1 1
+H003 (8) 14 1 1 1
+H005 (9) 14 1 1 1
+H013 (6) 16 0 0 3
+H001 (7) 17 2 0 2
+H014 (5) 18 0 0 0
+ 21 23 0 0 1
+ 20 21 2 2 3
+H007 (3) 20 1 0 2
+ 19 20 0 0 1
+H012 (10) 19 1 1 2
+H011 (13) 19 1 0 1
+H009 (11) 21 2 0 2
+ 22 23 2 1 2
+H008 (4) 22 1 1 1
+H006 (12) 22 0 0 0
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7297
+Rescaled consistency index (RC) = 0.4125
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------------ H010
+| |
+| /----------15 /------------ H003
+| | \----------14
+| /-----------16 \------------ H005
+| | |
+| /----------17 \------------------------------------ H013
+| | |
++----------18 \------------------------------------------------- H001
+| |
+23 \------------------------------------------------------------- H014
+|
+| /------------------------ H007
+| |
+| /----------20 /------------ H012
+| | \----------19
++-----------------------------------21 \------------ H011
+| |
+| \------------------------------------ H009
+|
+| /------------ H008
+\-----------------------------------------------------------22
+ \------------ H006
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_18 9 1 0.500 1 ==> 2
+ 10 1 1.000 1 ==> 2
+ node_18 --> node_17 8 1 1.000 1 ==> 2
+ node_17 --> node_16 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_16 --> node_15 6 1 0.500 1 --> 2
+ 7 1 0.500 1 --> 2
+ node_15 --> H010 5 1 1.000 2 ==> 1
+ node_15 --> node_14 3 1 1.000 2 ==> 1
+ node_14 --> H003 4 1 1.000 2 ==> 1
+ node_14 --> H005 12 1 0.333 2 ==> 1
+ node_17 --> H001 6 1 0.500 1 --> 2
+ 7 1 0.500 1 --> 2
+ node_21 --> node_20 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_20 --> H007 12 1 0.333 2 --> 1
+ node_19 --> H012 11 1 0.500 2 ==> 1
+ node_19 --> H011 13 1 0.333 0 --> 1
+ node_21 --> H009 12 1 0.333 2 --> 1
+ 13 1 0.333 0 --> 1
+ node_23 --> node_22 11 1 0.500 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_22 --> H008 9 1 0.500 1 ==> 2
+
+Tree number 65 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #65 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 22 0 0 0
+ 17 22 2 2 3
+ 16 17 3 3 4
+ 15 16 2 2 2
+H010 (2) 15 1 1 1
+H001 (7) 15 2 2 2
+ 14 15 1 1 1
+H003 (8) 14 1 1 1
+H005 (9) 14 1 1 1
+H013 (6) 16 0 0 1
+H014 (5) 17 0 0 0
+ 20 22 0 0 1
+ 19 20 2 2 3
+H007 (3) 19 1 0 2
+ 18 19 0 0 1
+H012 (10) 18 1 1 2
+H011 (13) 18 1 0 1
+H009 (11) 20 2 0 2
+ 21 22 2 1 2
+H008 (4) 21 1 1 1
+H006 (12) 21 0 0 0
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7297
+Rescaled consistency index (RC) = 0.4125
+
+/------------------------------------------------------------------------- H002
+|
+| /----------------------------- H010
+| |
+| +----------------------------- H001
+| /-------------15
+| | | /--------------- H003
+| | \------------14
+| /------------16 \--------------- H005
+| | |
++-------------17 \-------------------------------------------- H013
+| |
+22 \---------------------------------------------------------- H014
+|
+| /----------------------------- H007
+| |
+| /-------------19 /--------------- H012
+| | \------------18
++---------------------------20 \--------------- H011
+| |
+| \-------------------------------------------- H009
+|
+| /--------------- H008
+\--------------------------------------------------------21
+ \--------------- H006
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_17 9 1 0.500 1 ==> 2
+ 10 1 1.000 1 ==> 2
+ node_17 --> node_16 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ 8 1 1.000 1 ==> 2
+ node_16 --> node_15 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_15 --> H010 5 1 1.000 2 ==> 1
+ node_15 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_15 --> node_14 3 1 1.000 2 ==> 1
+ node_14 --> H003 4 1 1.000 2 ==> 1
+ node_14 --> H005 12 1 0.333 2 ==> 1
+ node_20 --> node_19 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_19 --> H007 12 1 0.333 2 --> 1
+ node_18 --> H012 11 1 0.500 2 ==> 1
+ node_18 --> H011 13 1 0.333 0 --> 1
+ node_20 --> H009 12 1 0.333 2 --> 1
+ 13 1 0.333 0 --> 1
+ node_22 --> node_21 11 1 0.500 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_21 --> H008 9 1 0.500 1 ==> 2
+
+Tree number 66 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #66 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 20 0 0 0
+ 17 20 2 2 3
+ 16 17 3 3 4
+ 15 16 2 2 3
+H010 (2) 15 1 1 1
+H013 (6) 15 2 2 3
+ 14 15 1 1 1
+H003 (8) 14 1 1 1
+H005 (9) 14 1 1 1
+H001 (7) 16 0 0 0
+H014 (5) 17 0 0 0
+ 18 20 2 2 3
+H007 (3) 18 1 1 2
+H012 (10) 18 1 1 2
+H011 (13) 18 1 0 1
+ 19 20 2 1 2
+H008 (4) 19 1 1 1
+H006 (12) 19 0 0 0
+H009 (11) 20 2 1 2
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7297
+Rescaled consistency index (RC) = 0.4125
+
+/------------------------------------------------------------------------- H002
+|
+| /----------------------------- H010
+| |
+| +----------------------------- H013
+| /-------------15
+| | | /--------------- H003
+| | \------------14
+| /------------16 \--------------- H005
+| | |
++-------------17 \-------------------------------------------- H001
+| |
+20 \---------------------------------------------------------- H014
+|
+| /--------------- H007
+| |
++--------------------------------------------------------18--------------- H012
+| |
+| \--------------- H011
+|
+| /--------------- H008
++--------------------------------------------------------19
+| \--------------- H006
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_20 --> node_17 9 1 0.500 1 ==> 2
+ 10 1 1.000 1 ==> 2
+ node_17 --> node_16 6 1 0.500 1 ==> 2
+ 7 1 0.500 1 ==> 2
+ 8 1 1.000 1 ==> 2
+ node_16 --> node_15 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_15 --> H010 5 1 1.000 2 ==> 1
+ node_15 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ node_15 --> node_14 3 1 1.000 2 ==> 1
+ node_14 --> H003 4 1 1.000 2 ==> 1
+ node_14 --> H005 12 1 0.333 2 ==> 1
+ node_20 --> node_18 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_18 --> H007 12 1 0.333 2 ==> 1
+ node_18 --> H012 11 1 0.500 2 ==> 1
+ node_18 --> H011 13 1 0.333 0 --> 1
+ node_20 --> node_19 11 1 0.500 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_19 --> H008 9 1 0.500 1 ==> 2
+ node_20 --> H009 12 1 0.333 2 ==> 1
+ 13 1 0.333 0 --> 1
+
+Tree number 67 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #67 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 22 0 0 0
+ 17 22 2 2 3
+ 16 17 3 3 4
+ 15 16 2 2 2
+H010 (2) 15 1 1 1
+H001 (7) 15 2 2 2
+ 14 15 1 1 1
+H003 (8) 14 1 1 1
+H005 (9) 14 1 1 1
+H013 (6) 16 0 0 1
+H014 (5) 17 0 0 0
+ 21 22 0 0 1
+ 19 21 2 2 3
+ 18 19 0 0 1
+H007 (3) 18 1 1 2
+H011 (13) 18 1 0 1
+H012 (10) 19 1 0 2
+ 20 21 2 0 2
+H008 (4) 20 1 1 1
+H006 (12) 20 0 0 0
+H009 (11) 22 2 1 2
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7297
+Rescaled consistency index (RC) = 0.4125
+
+/------------------------------------------------------------------------- H002
+|
+| /----------------------------- H010
+| |
+| +----------------------------- H001
+| /-------------15
+| | | /--------------- H003
+| | \------------14
+| /------------16 \--------------- H005
+| | |
++-------------17 \-------------------------------------------- H013
+| |
+22 \---------------------------------------------------------- H014
+|
+| /--------------- H007
+| /------------18
+| | \--------------- H011
+| /-------------19
+| | \----------------------------- H012
++---------------------------21
+| | /--------------- H008
+| \---------------------------20
+| \--------------- H006
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_17 9 1 0.500 1 ==> 2
+ 10 1 1.000 1 ==> 2
+ node_17 --> node_16 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ 8 1 1.000 1 ==> 2
+ node_16 --> node_15 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_15 --> H010 5 1 1.000 2 ==> 1
+ node_15 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_15 --> node_14 3 1 1.000 2 ==> 1
+ node_14 --> H003 4 1 1.000 2 ==> 1
+ node_14 --> H005 12 1 0.333 2 ==> 1
+ node_21 --> node_19 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_18 --> H007 12 1 0.333 2 ==> 1
+ node_18 --> H011 13 1 0.333 0 --> 1
+ node_19 --> H012 11 1 0.500 2 --> 1
+ node_21 --> node_20 11 1 0.500 2 --> 1
+ 13 1 0.333 0 --> 1
+ node_20 --> H008 9 1 0.500 1 ==> 2
+ node_22 --> H009 12 1 0.333 2 ==> 1
+ 13 1 0.333 0 --> 1
+
+Tree number 68 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #68 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 23 0 0 0
+ 22 23 0 0 1
+ 17 22 2 1 3
+ 16 17 3 3 4
+ 15 16 2 2 2
+H010 (2) 15 1 1 1
+H001 (7) 15 2 2 2
+ 14 15 1 1 1
+H003 (8) 14 1 1 1
+H005 (9) 14 1 1 1
+H013 (6) 16 1 0 1
+H014 (5) 17 0 0 0
+ 21 22 1 1 1
+ 20 21 0 0 1
+ 19 20 2 2 3
+ 18 19 1 1 1
+H007 (3) 18 2 1 2
+H011 (13) 18 0 0 1
+H012 (10) 19 1 0 1
+H006 (12) 20 0 0 0
+H008 (4) 21 1 0 1
+H009 (11) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7297
+Rescaled consistency index (RC) = 0.4125
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------------ H010
+| |
+| +------------------------ H001
+| /----------15
+| | | /------------ H003
+| | \----------14
+| /-----------16 \------------ H005
+| | |
+| /----------17 \------------------------------------ H013
+| | |
+23 | \------------------------------------------------- H014
+| |
+| | /------------ H007
+| | /----------18
++----------22 | \------------ H011
+| | /----------19
+| | | \------------------------ H012
+| | /-----------20
+| | | \------------------------------------ H006
+| \----------21
+| \------------------------------------------------- H008
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_17 9 1 0.500 1 --> 2
+ 10 1 1.000 1 ==> 2
+ node_17 --> node_16 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ 8 1 1.000 1 ==> 2
+ node_16 --> node_15 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_15 --> H010 5 1 1.000 2 ==> 1
+ node_15 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_15 --> node_14 3 1 1.000 2 ==> 1
+ node_14 --> H003 4 1 1.000 2 ==> 1
+ node_14 --> H005 12 1 0.333 2 ==> 1
+ node_16 --> H013 13 1 0.333 1 --> 0
+ node_22 --> node_21 11 1 0.500 2 ==> 1
+ node_20 --> node_19 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_19 --> node_18 11 1 0.500 1 ==> 2
+ node_18 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_19 --> H012 13 1 0.333 1 --> 0
+ node_21 --> H008 9 1 0.500 1 --> 2
+ node_23 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 69 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #69 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 21 0 0 0
+ 17 21 2 2 3
+ 16 17 3 3 4
+ 15 16 2 2 2
+H010 (2) 15 1 1 1
+H001 (7) 15 2 2 2
+ 14 15 1 1 1
+H003 (8) 14 1 1 1
+H005 (9) 14 1 1 1
+H013 (6) 16 1 0 1
+H014 (5) 17 0 0 0
+ 20 21 1 1 1
+ 19 20 2 2 3
+ 18 19 1 1 1
+H007 (3) 18 2 1 2
+H011 (13) 18 0 0 1
+H012 (10) 19 1 0 1
+H008 (4) 20 1 1 1
+H006 (12) 20 0 0 0
+H009 (11) 21 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7297
+Rescaled consistency index (RC) = 0.4125
+
+/------------------------------------------------------------------------- H002
+|
+| /----------------------------- H010
+| |
+| +----------------------------- H001
+| /-------------15
+| | | /--------------- H003
+| | \------------14
+| /------------16 \--------------- H005
+| | |
++-------------17 \-------------------------------------------- H013
+| |
+21 \---------------------------------------------------------- H014
+|
+| /--------------- H007
+| /------------18
+| | \--------------- H011
+| /-------------19
+| | \----------------------------- H012
+| |
++---------------------------20-------------------------------------------- H008
+| |
+| \-------------------------------------------- H006
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_17 9 1 0.500 1 ==> 2
+ 10 1 1.000 1 ==> 2
+ node_17 --> node_16 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ 8 1 1.000 1 ==> 2
+ node_16 --> node_15 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_15 --> H010 5 1 1.000 2 ==> 1
+ node_15 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_15 --> node_14 3 1 1.000 2 ==> 1
+ node_14 --> H003 4 1 1.000 2 ==> 1
+ node_14 --> H005 12 1 0.333 2 ==> 1
+ node_16 --> H013 13 1 0.333 1 --> 0
+ node_21 --> node_20 11 1 0.500 2 ==> 1
+ node_20 --> node_19 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_19 --> node_18 11 1 0.500 1 ==> 2
+ node_18 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_19 --> H012 13 1 0.333 1 --> 0
+ node_20 --> H008 9 1 0.500 1 ==> 2
+ node_21 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 70 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #70 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 20 0 0 0
+ 17 20 2 2 3
+ 16 17 3 3 4
+ 15 16 2 2 2
+H010 (2) 15 1 1 1
+H001 (7) 15 2 2 2
+ 14 15 1 1 1
+H003 (8) 14 1 1 1
+H005 (9) 14 1 1 1
+H013 (6) 16 0 0 1
+H014 (5) 17 0 0 0
+ 18 20 2 2 3
+H007 (3) 18 1 1 2
+H012 (10) 18 1 1 2
+H011 (13) 18 1 0 1
+ 19 20 2 1 2
+H008 (4) 19 1 1 1
+H006 (12) 19 0 0 0
+H009 (11) 20 2 1 2
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7297
+Rescaled consistency index (RC) = 0.4125
+
+/------------------------------------------------------------------------- H002
+|
+| /----------------------------- H010
+| |
+| +----------------------------- H001
+| /-------------15
+| | | /--------------- H003
+| | \------------14
+| /------------16 \--------------- H005
+| | |
++-------------17 \-------------------------------------------- H013
+| |
+20 \---------------------------------------------------------- H014
+|
+| /--------------- H007
+| |
++--------------------------------------------------------18--------------- H012
+| |
+| \--------------- H011
+|
+| /--------------- H008
++--------------------------------------------------------19
+| \--------------- H006
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_20 --> node_17 9 1 0.500 1 ==> 2
+ 10 1 1.000 1 ==> 2
+ node_17 --> node_16 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ 8 1 1.000 1 ==> 2
+ node_16 --> node_15 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_15 --> H010 5 1 1.000 2 ==> 1
+ node_15 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_15 --> node_14 3 1 1.000 2 ==> 1
+ node_14 --> H003 4 1 1.000 2 ==> 1
+ node_14 --> H005 12 1 0.333 2 ==> 1
+ node_20 --> node_18 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_18 --> H007 12 1 0.333 2 ==> 1
+ node_18 --> H012 11 1 0.500 2 ==> 1
+ node_18 --> H011 13 1 0.333 0 --> 1
+ node_20 --> node_19 11 1 0.500 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_19 --> H008 9 1 0.500 1 ==> 2
+ node_20 --> H009 12 1 0.333 2 ==> 1
+ 13 1 0.333 0 --> 1
+
+Tree number 71 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #71 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 23 0 0 0
+ 19 23 0 0 1
+ 17 19 2 1 3
+ 16 17 3 3 4
+ 15 16 2 2 2
+H010 (2) 15 1 1 1
+H001 (7) 15 2 2 2
+ 14 15 1 1 1
+H003 (8) 14 1 1 1
+H005 (9) 14 1 1 1
+H013 (6) 16 0 0 1
+H014 (5) 17 0 0 0
+ 18 19 2 1 2
+H008 (4) 18 1 0 1
+H006 (12) 18 0 0 1
+ 22 23 0 0 1
+ 21 22 2 2 3
+H007 (3) 21 1 0 2
+ 20 21 0 0 1
+H012 (10) 20 1 1 2
+H011 (13) 20 1 0 1
+H009 (11) 22 2 0 2
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7297
+Rescaled consistency index (RC) = 0.4125
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------------ H010
+| |
+| +------------------------ H001
+| /----------15
+| | | /------------ H003
+| | \----------14
+| /-----------16 \------------ H005
+| | |
+| /----------17 \------------------------------------ H013
+23 | |
+| | \------------------------------------------------- H014
++----------19
+| | /------------ H008
+| \-----------------------------------------------18
+| \------------ H006
+|
+| /------------------------ H007
+| |
+| /----------21 /------------ H012
+| | \----------20
+\-----------------------------------22 \------------ H011
+ |
+ \------------------------------------ H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_19 --> node_17 9 1 0.500 1 --> 2
+ 10 1 1.000 1 ==> 2
+ node_17 --> node_16 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ 8 1 1.000 1 ==> 2
+ node_16 --> node_15 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_15 --> H010 5 1 1.000 2 ==> 1
+ node_15 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_15 --> node_14 3 1 1.000 2 ==> 1
+ node_14 --> H003 4 1 1.000 2 ==> 1
+ node_14 --> H005 12 1 0.333 2 ==> 1
+ node_19 --> node_18 11 1 0.500 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_18 --> H008 9 1 0.500 1 --> 2
+ node_22 --> node_21 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_21 --> H007 12 1 0.333 2 --> 1
+ node_20 --> H012 11 1 0.500 2 ==> 1
+ node_20 --> H011 13 1 0.333 0 --> 1
+ node_22 --> H009 12 1 0.333 2 --> 1
+ 13 1 0.333 0 --> 1
+
+Tree number 72 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #72 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 22 0 0 0
+ 21 22 0 0 1
+ 18 21 1 1 1
+ 17 18 1 1 3
+ 16 17 3 3 4
+ 15 16 2 2 3
+H010 (2) 15 1 1 1
+H013 (6) 15 3 2 3
+ 14 15 1 1 1
+H003 (8) 14 1 1 1
+H005 (9) 14 1 1 1
+H001 (7) 16 0 0 0
+H014 (5) 17 0 0 0
+H008 (4) 18 1 0 1
+ 20 21 2 2 3
+ 19 20 0 0 1
+H007 (3) 19 2 1 2
+H011 (13) 19 0 0 1
+H012 (10) 20 2 0 2
+H006 (12) 21 1 0 1
+H009 (11) 22 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7297
+Rescaled consistency index (RC) = 0.4125
+
+/------------------------------------------------------------------------- H002
+|
+| /--------------------- H010
+| |
+| +--------------------- H013
+| /--------15
+| | | /---------- H003
+| | \---------14
+| /---------16 \---------- H005
+| | |
+| /--------17 \------------------------------- H001
+| | |
+22 /---------18 \------------------------------------------ H014
+| | |
+| | \---------------------------------------------------- H008
+| |
+| | /---------- H007
++--------21 /---------19
+| | | \---------- H011
+| +----------------------------------------20
+| | \--------------------- H012
+| |
+| \--------------------------------------------------------------- H006
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_18 9 1 1.000 1 ==> 2
+ node_18 --> node_17 10 1 1.000 1 ==> 2
+ node_17 --> node_16 6 1 0.500 1 ==> 2
+ 7 1 0.500 1 ==> 2
+ 8 1 1.000 1 ==> 2
+ node_16 --> node_15 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_15 --> H010 5 1 1.000 2 ==> 1
+ node_15 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_15 --> node_14 3 1 1.000 2 ==> 1
+ node_14 --> H003 4 1 1.000 2 ==> 1
+ node_14 --> H005 12 1 0.333 2 ==> 1
+ node_18 --> H008 11 1 0.333 2 --> 1
+ node_21 --> node_20 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_19 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_20 --> H012 11 1 0.333 2 --> 1
+ 13 1 0.333 1 --> 0
+ node_21 --> H006 11 1 0.333 2 --> 1
+ node_22 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 73 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #73 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 24 0 0 0
+ 23 24 0 0 1
+ 18 23 2 1 3
+ 17 18 1 1 4
+ 16 17 2 2 2
+ 15 16 2 0 2
+H010 (2) 15 1 1 1
+ 14 15 1 1 1
+H003 (8) 14 1 1 1
+H005 (9) 14 1 1 1
+H001 (7) 16 0 0 2
+H013 (6) 17 3 0 3
+H014 (5) 18 0 0 0
+ 22 23 1 1 1
+ 21 22 0 0 1
+ 20 21 2 2 3
+ 19 20 1 1 1
+H007 (3) 19 2 1 2
+H011 (13) 19 0 0 1
+H012 (10) 20 1 0 1
+H006 (12) 21 0 0 0
+H008 (4) 22 1 0 1
+H009 (11) 24 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7297
+Rescaled consistency index (RC) = 0.4125
+
+/------------------------------------------------------------------------- H002
+|
+| /--------------------- H010
+| |
+| /--------15 /---------- H003
+| | \---------14
+| /---------16 \---------- H005
+| | |
+| /--------17 \------------------------------- H001
+| | |
+| /---------18 \------------------------------------------ H013
+| | |
+24 | \---------------------------------------------------- H014
+| |
+| | /---------- H007
+| | /---------19
++--------23 | \---------- H011
+| | /--------20
+| | | \--------------------- H012
+| | /---------21
+| | | \------------------------------- H006
+| \-------------------22
+| \------------------------------------------ H008
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_18 9 1 0.500 1 --> 2
+ 10 1 1.000 1 ==> 2
+ node_18 --> node_17 8 1 1.000 1 ==> 2
+ node_17 --> node_16 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_16 --> node_15 1 1 0.333 1 --> 2
+ 2 1 0.333 1 --> 2
+ node_15 --> H010 5 1 1.000 2 ==> 1
+ node_15 --> node_14 3 1 1.000 2 ==> 1
+ node_14 --> H003 4 1 1.000 2 ==> 1
+ node_14 --> H005 12 1 0.333 2 ==> 1
+ node_17 --> H013 1 1 0.333 1 --> 2
+ 2 1 0.333 1 --> 2
+ 13 1 0.333 1 --> 0
+ node_23 --> node_22 11 1 0.500 2 ==> 1
+ node_21 --> node_20 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_20 --> node_19 11 1 0.500 1 ==> 2
+ node_19 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_20 --> H012 13 1 0.333 1 --> 0
+ node_22 --> H008 9 1 0.500 1 --> 2
+ node_24 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 74 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #74 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 24 0 0 0
+ 20 24 0 0 1
+ 19 20 1 1 1
+ 18 19 1 1 3
+ 17 18 1 1 4
+ 16 17 2 2 3
+ 15 16 2 0 2
+H010 (2) 15 1 1 1
+ 14 15 1 1 1
+H003 (8) 14 1 1 1
+H005 (9) 14 1 1 1
+H013 (6) 16 1 0 3
+H001 (7) 17 2 0 2
+H014 (5) 18 0 0 0
+H008 (4) 19 1 0 1
+H006 (12) 20 1 0 1
+ 23 24 0 0 1
+ 22 23 2 2 3
+H007 (3) 22 2 0 2
+ 21 22 0 0 1
+H012 (10) 21 2 1 2
+H011 (13) 21 0 0 1
+H009 (11) 23 1 0 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7297
+Rescaled consistency index (RC) = 0.4125
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------ H010
+| |
+| /-------15 /--------- H003
+| | \-------14
+| /--------16 \--------- H005
+| | |
+| /-------17 \--------------------------- H013
+| | |
+| /-------18 \------------------------------------- H001
+24 | |
+| /-------19 \---------------------------------------------- H014
+| | |
++-------20 \------------------------------------------------------- H008
+| |
+| \---------------------------------------------------------------- H006
+|
+| /------------------ H007
+| |
+| /-------22 /--------- H012
+| | \-------21
+\--------------------------------------------23 \--------- H011
+ |
+ \--------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_20 --> node_19 9 1 1.000 1 ==> 2
+ node_19 --> node_18 10 1 1.000 1 ==> 2
+ node_18 --> node_17 8 1 1.000 1 ==> 2
+ node_17 --> node_16 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_16 --> node_15 6 1 0.500 1 --> 2
+ 7 1 0.500 1 --> 2
+ node_15 --> H010 5 1 1.000 2 ==> 1
+ node_15 --> node_14 3 1 1.000 2 ==> 1
+ node_14 --> H003 4 1 1.000 2 ==> 1
+ node_14 --> H005 12 1 0.333 2 ==> 1
+ node_16 --> H013 13 1 0.333 1 --> 0
+ node_17 --> H001 6 1 0.500 1 --> 2
+ 7 1 0.500 1 --> 2
+ node_19 --> H008 11 1 0.333 2 --> 1
+ node_20 --> H006 11 1 0.333 2 --> 1
+ node_23 --> node_22 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_22 --> H007 12 1 0.333 2 --> 1
+ 13 1 0.333 1 --> 0
+ node_21 --> H012 11 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_23 --> H009 12 1 0.333 2 --> 1
+
+Tree number 75 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #75 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 24 0 0 0
+ 23 24 0 0 1
+ 20 23 0 0 1
+ 19 20 1 1 1
+ 18 19 1 1 3
+ 17 18 1 1 4
+ 16 17 2 2 3
+ 15 16 2 0 2
+H010 (2) 15 1 1 1
+ 14 15 1 1 1
+H003 (8) 14 1 1 1
+H005 (9) 14 1 1 1
+H013 (6) 16 1 0 3
+H001 (7) 17 2 0 2
+H014 (5) 18 0 0 0
+H008 (4) 19 1 0 1
+H006 (12) 20 1 0 1
+ 22 23 2 2 3
+ 21 22 0 0 1
+H007 (3) 21 2 1 2
+H011 (13) 21 0 0 1
+H012 (10) 22 2 0 2
+H009 (11) 24 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7297
+Rescaled consistency index (RC) = 0.4125
+
+/------------------------------------------------------------------------- H002
+|
+| /---------------- H010
+| |
+| /------15 /-------- H003
+| | \------14
+| /------16 \-------- H005
+| | |
+| /-------17 \------------------------ H013
+| | |
+| /------18 \-------------------------------- H001
+| | |
+24 /------19 \----------------------------------------- H014
+| | |
+| /------20 \------------------------------------------------- H008
+| | |
+| | \--------------------------------------------------------- H006
+| |
++------23 /-------- H007
+| | /------21
+| | | \-------- H011
+| \-----------------------------------------------22
+| \---------------- H012
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_20 --> node_19 9 1 1.000 1 ==> 2
+ node_19 --> node_18 10 1 1.000 1 ==> 2
+ node_18 --> node_17 8 1 1.000 1 ==> 2
+ node_17 --> node_16 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_16 --> node_15 6 1 0.500 1 --> 2
+ 7 1 0.500 1 --> 2
+ node_15 --> H010 5 1 1.000 2 ==> 1
+ node_15 --> node_14 3 1 1.000 2 ==> 1
+ node_14 --> H003 4 1 1.000 2 ==> 1
+ node_14 --> H005 12 1 0.333 2 ==> 1
+ node_16 --> H013 13 1 0.333 1 --> 0
+ node_17 --> H001 6 1 0.500 1 --> 2
+ 7 1 0.500 1 --> 2
+ node_19 --> H008 11 1 0.333 2 --> 1
+ node_20 --> H006 11 1 0.333 2 --> 1
+ node_23 --> node_22 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_21 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_22 --> H012 11 1 0.333 2 --> 1
+ 13 1 0.333 1 --> 0
+ node_24 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 76 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #76 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 24 0 0 0
+ 23 24 0 0 1
+ 19 23 1 1 1
+ 18 19 1 1 3
+ 17 18 1 1 4
+ 16 17 2 2 3
+ 15 16 2 0 2
+H010 (2) 15 1 1 1
+ 14 15 1 1 1
+H003 (8) 14 1 1 1
+H005 (9) 14 1 1 1
+H013 (6) 16 1 0 3
+H001 (7) 17 2 0 2
+H014 (5) 18 0 0 0
+H008 (4) 19 1 0 1
+ 22 23 0 0 1
+ 21 22 2 2 3
+ 20 21 0 0 1
+H007 (3) 20 2 1 2
+H011 (13) 20 0 0 1
+H012 (10) 21 2 0 2
+H006 (12) 22 1 0 1
+H009 (11) 24 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7297
+Rescaled consistency index (RC) = 0.4125
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------ H010
+| |
+| /-------15 /--------- H003
+| | \-------14
+| /--------16 \--------- H005
+| | |
+| /-------17 \--------------------------- H013
+| | |
+| /-------18 \------------------------------------- H001
+| | |
+24 /-------19 \---------------------------------------------- H014
+| | |
+| | \------------------------------------------------------- H008
+| |
+| | /--------- H007
++-------23 /-------20
+| | | \--------- H011
+| | /-------21
+| | | \------------------ H012
+| \-----------------------------------22
+| \--------------------------- H006
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_19 9 1 1.000 1 ==> 2
+ node_19 --> node_18 10 1 1.000 1 ==> 2
+ node_18 --> node_17 8 1 1.000 1 ==> 2
+ node_17 --> node_16 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_16 --> node_15 6 1 0.500 1 --> 2
+ 7 1 0.500 1 --> 2
+ node_15 --> H010 5 1 1.000 2 ==> 1
+ node_15 --> node_14 3 1 1.000 2 ==> 1
+ node_14 --> H003 4 1 1.000 2 ==> 1
+ node_14 --> H005 12 1 0.333 2 ==> 1
+ node_16 --> H013 13 1 0.333 1 --> 0
+ node_17 --> H001 6 1 0.500 1 --> 2
+ 7 1 0.500 1 --> 2
+ node_19 --> H008 11 1 0.333 2 --> 1
+ node_22 --> node_21 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_20 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_21 --> H012 11 1 0.333 2 --> 1
+ 13 1 0.333 1 --> 0
+ node_22 --> H006 11 1 0.333 2 --> 1
+ node_24 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 77 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #77 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 23 0 0 0
+ 22 23 0 0 1
+ 19 22 1 1 1
+ 18 19 1 1 3
+ 17 18 1 1 4
+ 16 17 2 2 3
+ 15 16 2 0 2
+H010 (2) 15 1 1 1
+ 14 15 1 1 1
+H003 (8) 14 1 1 1
+H005 (9) 14 1 1 1
+H013 (6) 16 1 0 3
+H001 (7) 17 2 0 2
+H014 (5) 18 0 0 0
+H008 (4) 19 1 0 1
+ 21 22 2 2 3
+ 20 21 0 0 1
+H007 (3) 20 2 1 2
+H011 (13) 20 0 0 1
+H012 (10) 21 2 0 2
+H006 (12) 22 1 0 1
+H009 (11) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7297
+Rescaled consistency index (RC) = 0.4125
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------ H010
+| |
+| /-------15 /--------- H003
+| | \-------14
+| /--------16 \--------- H005
+| | |
+| /-------17 \--------------------------- H013
+| | |
+| /-------18 \------------------------------------- H001
+| | |
+23 /-------19 \---------------------------------------------- H014
+| | |
+| | \------------------------------------------------------- H008
+| |
+| | /--------- H007
++-------22 /-------20
+| | | \--------- H011
+| +--------------------------------------------21
+| | \------------------ H012
+| |
+| \---------------------------------------------------------------- H006
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_19 9 1 1.000 1 ==> 2
+ node_19 --> node_18 10 1 1.000 1 ==> 2
+ node_18 --> node_17 8 1 1.000 1 ==> 2
+ node_17 --> node_16 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_16 --> node_15 6 1 0.500 1 --> 2
+ 7 1 0.500 1 --> 2
+ node_15 --> H010 5 1 1.000 2 ==> 1
+ node_15 --> node_14 3 1 1.000 2 ==> 1
+ node_14 --> H003 4 1 1.000 2 ==> 1
+ node_14 --> H005 12 1 0.333 2 ==> 1
+ node_16 --> H013 13 1 0.333 1 --> 0
+ node_17 --> H001 6 1 0.500 1 --> 2
+ 7 1 0.500 1 --> 2
+ node_19 --> H008 11 1 0.333 2 --> 1
+ node_22 --> node_21 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_20 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_21 --> H012 11 1 0.333 2 --> 1
+ 13 1 0.333 1 --> 0
+ node_22 --> H006 11 1 0.333 2 --> 1
+ node_23 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 78 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #78 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 24 0 0 0
+ 20 24 0 0 1
+ 18 20 2 1 3
+ 17 18 1 1 4
+ 16 17 2 2 3
+ 15 16 2 0 2
+H010 (2) 15 1 1 1
+ 14 15 1 1 1
+H003 (8) 14 1 1 1
+H005 (9) 14 1 1 1
+H013 (6) 16 0 0 3
+H001 (7) 17 2 0 2
+H014 (5) 18 0 0 0
+ 19 20 2 1 2
+H008 (4) 19 1 0 1
+H006 (12) 19 0 0 1
+ 23 24 0 0 1
+ 22 23 2 2 3
+H007 (3) 22 1 0 2
+ 21 22 0 0 1
+H012 (10) 21 1 1 2
+H011 (13) 21 1 0 1
+H009 (11) 23 2 0 2
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7297
+Rescaled consistency index (RC) = 0.4125
+
+/------------------------------------------------------------------------- H002
+|
+| /--------------------- H010
+| |
+| /--------15 /---------- H003
+| | \---------14
+| /---------16 \---------- H005
+| | |
+| /--------17 \------------------------------- H013
+| | |
+| /---------18 \------------------------------------------ H001
+24 | |
+| | \---------------------------------------------------- H014
++--------20
+| | /---------- H008
+| \---------------------------------------------------19
+| \---------- H006
+|
+| /--------------------- H007
+| |
+| /--------22 /---------- H012
+| | \---------21
+\----------------------------------------23 \---------- H011
+ |
+ \------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_20 --> node_18 9 1 0.500 1 --> 2
+ 10 1 1.000 1 ==> 2
+ node_18 --> node_17 8 1 1.000 1 ==> 2
+ node_17 --> node_16 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_16 --> node_15 6 1 0.500 1 --> 2
+ 7 1 0.500 1 --> 2
+ node_15 --> H010 5 1 1.000 2 ==> 1
+ node_15 --> node_14 3 1 1.000 2 ==> 1
+ node_14 --> H003 4 1 1.000 2 ==> 1
+ node_14 --> H005 12 1 0.333 2 ==> 1
+ node_17 --> H001 6 1 0.500 1 --> 2
+ 7 1 0.500 1 --> 2
+ node_20 --> node_19 11 1 0.500 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_19 --> H008 9 1 0.500 1 --> 2
+ node_23 --> node_22 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_22 --> H007 12 1 0.333 2 --> 1
+ node_21 --> H012 11 1 0.500 2 ==> 1
+ node_21 --> H011 13 1 0.333 0 --> 1
+ node_23 --> H009 12 1 0.333 2 --> 1
+ 13 1 0.333 0 --> 1
+
+Tree number 79 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #79 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 22 0 0 0
+ 18 22 1 1 1
+ 17 18 1 1 2
+ 16 17 3 3 4
+ 15 16 2 2 2
+H010 (2) 15 1 1 1
+H001 (7) 15 2 2 2
+ 14 15 1 1 1
+H003 (8) 14 1 1 1
+H005 (9) 14 1 1 1
+H013 (6) 16 1 0 1
+H014 (5) 17 0 0 0
+H008 (4) 18 1 1 1
+ 21 22 0 0 1
+ 20 21 2 2 3
+H007 (3) 20 2 0 2
+ 19 20 0 0 1
+H012 (10) 19 2 1 2
+H011 (13) 19 0 0 1
+H009 (11) 21 1 0 1
+H006 (12) 22 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7297
+Rescaled consistency index (RC) = 0.4125
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------------ H010
+| |
+| +------------------------ H001
+| /----------15
+| | | /------------ H003
+| | \----------14
+| /-----------16 \------------ H005
+| | |
+| /----------17 \------------------------------------ H013
+| | |
+22---------18 \------------------------------------------------- H014
+| |
+| \------------------------------------------------------------- H008
+|
+| /------------------------ H007
+| |
+| /----------20 /------------ H012
+| | \----------19
++-----------------------------------21 \------------ H011
+| |
+| \------------------------------------ H009
+|
+\------------------------------------------------------------------------- H006
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_18 9 1 1.000 1 ==> 2
+ node_18 --> node_17 10 1 1.000 1 ==> 2
+ node_17 --> node_16 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ 8 1 1.000 1 ==> 2
+ node_16 --> node_15 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_15 --> H010 5 1 1.000 2 ==> 1
+ node_15 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_15 --> node_14 3 1 1.000 2 ==> 1
+ node_14 --> H003 4 1 1.000 2 ==> 1
+ node_14 --> H005 12 1 0.333 2 ==> 1
+ node_16 --> H013 13 1 0.333 1 --> 0
+ node_18 --> H008 11 1 0.333 2 ==> 1
+ node_21 --> node_20 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_20 --> H007 12 1 0.333 2 --> 1
+ 13 1 0.333 1 --> 0
+ node_19 --> H012 11 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_21 --> H009 12 1 0.333 2 --> 1
+ node_22 --> H006 11 1 0.333 2 ==> 1
+
+Tree number 80 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #80 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 23 0 0 0
+ 19 23 0 0 1
+ 17 19 2 1 3
+ 16 17 3 3 4
+ 15 16 2 2 3
+H010 (2) 15 1 1 1
+H013 (6) 15 2 2 3
+ 14 15 1 1 1
+H003 (8) 14 1 1 1
+H005 (9) 14 1 1 1
+H001 (7) 16 0 0 0
+H014 (5) 17 0 0 0
+ 18 19 2 1 2
+H008 (4) 18 1 0 1
+H006 (12) 18 0 0 1
+ 22 23 0 0 1
+ 21 22 2 2 3
+H007 (3) 21 1 0 2
+ 20 21 0 0 1
+H012 (10) 20 1 1 2
+H011 (13) 20 1 0 1
+H009 (11) 22 2 0 2
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7297
+Rescaled consistency index (RC) = 0.4125
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------------ H010
+| |
+| +------------------------ H013
+| /----------15
+| | | /------------ H003
+| | \----------14
+| /-----------16 \------------ H005
+| | |
+| /----------17 \------------------------------------ H001
+23 | |
+| | \------------------------------------------------- H014
++----------19
+| | /------------ H008
+| \-----------------------------------------------18
+| \------------ H006
+|
+| /------------------------ H007
+| |
+| /----------21 /------------ H012
+| | \----------20
+\-----------------------------------22 \------------ H011
+ |
+ \------------------------------------ H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_19 --> node_17 9 1 0.500 1 --> 2
+ 10 1 1.000 1 ==> 2
+ node_17 --> node_16 6 1 0.500 1 ==> 2
+ 7 1 0.500 1 ==> 2
+ 8 1 1.000 1 ==> 2
+ node_16 --> node_15 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_15 --> H010 5 1 1.000 2 ==> 1
+ node_15 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ node_15 --> node_14 3 1 1.000 2 ==> 1
+ node_14 --> H003 4 1 1.000 2 ==> 1
+ node_14 --> H005 12 1 0.333 2 ==> 1
+ node_19 --> node_18 11 1 0.500 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_18 --> H008 9 1 0.500 1 --> 2
+ node_22 --> node_21 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_21 --> H007 12 1 0.333 2 --> 1
+ node_20 --> H012 11 1 0.500 2 ==> 1
+ node_20 --> H011 13 1 0.333 0 --> 1
+ node_22 --> H009 12 1 0.333 2 --> 1
+ 13 1 0.333 0 --> 1
+
+Tree number 81 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #81 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 22 0 0 0
+ 18 22 1 1 1
+ 17 18 1 1 2
+ 16 17 3 3 4
+ 15 16 2 2 3
+H010 (2) 15 1 1 1
+H013 (6) 15 3 2 3
+ 14 15 1 1 1
+H003 (8) 14 1 1 1
+H005 (9) 14 1 1 1
+H001 (7) 16 0 0 0
+H014 (5) 17 0 0 0
+H008 (4) 18 1 1 1
+ 21 22 0 0 1
+ 20 21 2 2 3
+H007 (3) 20 2 0 2
+ 19 20 0 0 1
+H012 (10) 19 2 1 2
+H011 (13) 19 0 0 1
+H009 (11) 21 1 0 1
+H006 (12) 22 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7297
+Rescaled consistency index (RC) = 0.4125
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------------ H010
+| |
+| +------------------------ H013
+| /----------15
+| | | /------------ H003
+| | \----------14
+| /-----------16 \------------ H005
+| | |
+| /----------17 \------------------------------------ H001
+| | |
+22---------18 \------------------------------------------------- H014
+| |
+| \------------------------------------------------------------- H008
+|
+| /------------------------ H007
+| |
+| /----------20 /------------ H012
+| | \----------19
++-----------------------------------21 \------------ H011
+| |
+| \------------------------------------ H009
+|
+\------------------------------------------------------------------------- H006
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_18 9 1 1.000 1 ==> 2
+ node_18 --> node_17 10 1 1.000 1 ==> 2
+ node_17 --> node_16 6 1 0.500 1 ==> 2
+ 7 1 0.500 1 ==> 2
+ 8 1 1.000 1 ==> 2
+ node_16 --> node_15 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_15 --> H010 5 1 1.000 2 ==> 1
+ node_15 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_15 --> node_14 3 1 1.000 2 ==> 1
+ node_14 --> H003 4 1 1.000 2 ==> 1
+ node_14 --> H005 12 1 0.333 2 ==> 1
+ node_18 --> H008 11 1 0.333 2 ==> 1
+ node_21 --> node_20 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_20 --> H007 12 1 0.333 2 --> 1
+ 13 1 0.333 1 --> 0
+ node_19 --> H012 11 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_21 --> H009 12 1 0.333 2 --> 1
+ node_22 --> H006 11 1 0.333 2 ==> 1
+
+Tree number 82 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #82 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 23 0 0 0
+ 22 23 0 0 1
+ 17 22 2 1 3
+ 16 17 3 3 4
+ 15 16 2 2 3
+H010 (2) 15 1 1 1
+H013 (6) 15 3 2 3
+ 14 15 1 1 1
+H003 (8) 14 1 1 1
+H005 (9) 14 1 1 1
+H001 (7) 16 0 0 0
+H014 (5) 17 0 0 0
+ 21 22 1 1 1
+ 20 21 0 0 1
+ 19 20 2 2 3
+ 18 19 1 1 1
+H007 (3) 18 2 1 2
+H011 (13) 18 0 0 1
+H012 (10) 19 1 0 1
+H006 (12) 20 0 0 0
+H008 (4) 21 1 0 1
+H009 (11) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7297
+Rescaled consistency index (RC) = 0.4125
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------------ H010
+| |
+| +------------------------ H013
+| /----------15
+| | | /------------ H003
+| | \----------14
+| /-----------16 \------------ H005
+| | |
+| /----------17 \------------------------------------ H001
+| | |
+23 | \------------------------------------------------- H014
+| |
+| | /------------ H007
+| | /----------18
++----------22 | \------------ H011
+| | /----------19
+| | | \------------------------ H012
+| | /-----------20
+| | | \------------------------------------ H006
+| \----------21
+| \------------------------------------------------- H008
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_17 9 1 0.500 1 --> 2
+ 10 1 1.000 1 ==> 2
+ node_17 --> node_16 6 1 0.500 1 ==> 2
+ 7 1 0.500 1 ==> 2
+ 8 1 1.000 1 ==> 2
+ node_16 --> node_15 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_15 --> H010 5 1 1.000 2 ==> 1
+ node_15 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_15 --> node_14 3 1 1.000 2 ==> 1
+ node_14 --> H003 4 1 1.000 2 ==> 1
+ node_14 --> H005 12 1 0.333 2 ==> 1
+ node_22 --> node_21 11 1 0.500 2 ==> 1
+ node_20 --> node_19 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_19 --> node_18 11 1 0.500 1 ==> 2
+ node_18 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_19 --> H012 13 1 0.333 1 --> 0
+ node_21 --> H008 9 1 0.500 1 --> 2
+ node_23 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 83 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #83 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 22 0 0 0
+ 18 22 1 1 1
+ 17 18 1 1 2
+ 16 17 3 3 4
+ 15 16 2 2 2
+H010 (2) 15 1 1 1
+H001 (7) 15 2 2 2
+ 14 15 1 1 1
+H003 (8) 14 1 1 1
+H005 (9) 14 1 1 1
+H013 (6) 16 1 0 1
+H014 (5) 17 0 0 0
+H008 (4) 18 1 1 1
+ 21 22 0 0 1
+ 20 21 2 2 3
+ 19 20 0 0 1
+H007 (3) 19 2 1 2
+H011 (13) 19 0 0 1
+H012 (10) 20 2 0 2
+H006 (12) 21 1 0 1
+H009 (11) 22 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7297
+Rescaled consistency index (RC) = 0.4125
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------------ H010
+| |
+| +------------------------ H001
+| /----------15
+| | | /------------ H003
+| | \----------14
+| /-----------16 \------------ H005
+| | |
+| /----------17 \------------------------------------ H013
+| | |
+22---------18 \------------------------------------------------- H014
+| |
+| \------------------------------------------------------------- H008
+|
+| /------------ H007
+| /----------19
+| | \------------ H011
+| /----------20
+| | \------------------------ H012
++-----------------------------------21
+| \------------------------------------ H006
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_18 9 1 1.000 1 ==> 2
+ node_18 --> node_17 10 1 1.000 1 ==> 2
+ node_17 --> node_16 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ 8 1 1.000 1 ==> 2
+ node_16 --> node_15 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_15 --> H010 5 1 1.000 2 ==> 1
+ node_15 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_15 --> node_14 3 1 1.000 2 ==> 1
+ node_14 --> H003 4 1 1.000 2 ==> 1
+ node_14 --> H005 12 1 0.333 2 ==> 1
+ node_16 --> H013 13 1 0.333 1 --> 0
+ node_18 --> H008 11 1 0.333 2 ==> 1
+ node_21 --> node_20 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_19 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_20 --> H012 11 1 0.333 2 --> 1
+ 13 1 0.333 1 --> 0
+ node_21 --> H006 11 1 0.333 2 --> 1
+ node_22 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 84 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #84 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 22 0 0 0
+ 18 22 1 1 1
+ 17 18 1 1 2
+ 16 17 3 3 4
+ 15 16 2 2 3
+H010 (2) 15 1 1 1
+H013 (6) 15 3 2 3
+ 14 15 1 1 1
+H003 (8) 14 1 1 1
+H005 (9) 14 1 1 1
+H001 (7) 16 0 0 0
+H014 (5) 17 0 0 0
+H008 (4) 18 1 1 1
+ 21 22 0 0 1
+ 20 21 2 2 3
+ 19 20 0 0 1
+H007 (3) 19 2 1 2
+H011 (13) 19 0 0 1
+H012 (10) 20 2 0 2
+H006 (12) 21 1 0 1
+H009 (11) 22 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7297
+Rescaled consistency index (RC) = 0.4125
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------------ H010
+| |
+| +------------------------ H013
+| /----------15
+| | | /------------ H003
+| | \----------14
+| /-----------16 \------------ H005
+| | |
+| /----------17 \------------------------------------ H001
+| | |
+22---------18 \------------------------------------------------- H014
+| |
+| \------------------------------------------------------------- H008
+|
+| /------------ H007
+| /----------19
+| | \------------ H011
+| /----------20
+| | \------------------------ H012
++-----------------------------------21
+| \------------------------------------ H006
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_18 9 1 1.000 1 ==> 2
+ node_18 --> node_17 10 1 1.000 1 ==> 2
+ node_17 --> node_16 6 1 0.500 1 ==> 2
+ 7 1 0.500 1 ==> 2
+ 8 1 1.000 1 ==> 2
+ node_16 --> node_15 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_15 --> H010 5 1 1.000 2 ==> 1
+ node_15 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_15 --> node_14 3 1 1.000 2 ==> 1
+ node_14 --> H003 4 1 1.000 2 ==> 1
+ node_14 --> H005 12 1 0.333 2 ==> 1
+ node_18 --> H008 11 1 0.333 2 ==> 1
+ node_21 --> node_20 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_19 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_20 --> H012 11 1 0.333 2 --> 1
+ 13 1 0.333 1 --> 0
+ node_21 --> H006 11 1 0.333 2 --> 1
+ node_22 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 85 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #85 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 23 0 0 0
+ 18 23 2 2 3
+ 17 18 1 1 4
+ 16 17 2 2 3
+ 15 16 2 0 2
+H010 (2) 15 1 1 1
+ 14 15 1 1 1
+H003 (8) 14 1 1 1
+H005 (9) 14 1 1 1
+H013 (6) 16 0 0 3
+H001 (7) 17 2 0 2
+H014 (5) 18 0 0 0
+ 22 23 0 0 1
+ 20 22 2 2 3
+ 19 20 0 0 1
+H007 (3) 19 1 1 2
+H011 (13) 19 1 0 1
+H012 (10) 20 1 0 2
+ 21 22 2 0 2
+H008 (4) 21 1 1 1
+H006 (12) 21 0 0 0
+H009 (11) 23 2 1 2
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7297
+Rescaled consistency index (RC) = 0.4125
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------------ H010
+| |
+| /----------15 /------------ H003
+| | \----------14
+| /-----------16 \------------ H005
+| | |
+| /----------17 \------------------------------------ H013
+| | |
++----------18 \------------------------------------------------- H001
+| |
+23 \------------------------------------------------------------- H014
+|
+| /------------ H007
+| /----------19
+| | \------------ H011
+| /----------20
+| | \------------------------ H012
++-----------------------------------22
+| | /------------ H008
+| \----------------------21
+| \------------ H006
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_18 9 1 0.500 1 ==> 2
+ 10 1 1.000 1 ==> 2
+ node_18 --> node_17 8 1 1.000 1 ==> 2
+ node_17 --> node_16 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_16 --> node_15 6 1 0.500 1 --> 2
+ 7 1 0.500 1 --> 2
+ node_15 --> H010 5 1 1.000 2 ==> 1
+ node_15 --> node_14 3 1 1.000 2 ==> 1
+ node_14 --> H003 4 1 1.000 2 ==> 1
+ node_14 --> H005 12 1 0.333 2 ==> 1
+ node_17 --> H001 6 1 0.500 1 --> 2
+ 7 1 0.500 1 --> 2
+ node_22 --> node_20 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_19 --> H007 12 1 0.333 2 ==> 1
+ node_19 --> H011 13 1 0.333 0 --> 1
+ node_20 --> H012 11 1 0.500 2 --> 1
+ node_22 --> node_21 11 1 0.500 2 --> 1
+ 13 1 0.333 0 --> 1
+ node_21 --> H008 9 1 0.500 1 ==> 2
+ node_23 --> H009 12 1 0.333 2 ==> 1
+ 13 1 0.333 0 --> 1
+
+Tree number 86 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #86 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 24 0 0 0
+ 23 24 0 0 1
+ 18 23 2 1 3
+ 17 18 1 1 4
+ 16 17 2 2 3
+ 15 16 2 0 2
+H010 (2) 15 1 1 1
+ 14 15 1 1 1
+H003 (8) 14 1 1 1
+H005 (9) 14 1 1 1
+H013 (6) 16 1 0 3
+H001 (7) 17 2 0 2
+H014 (5) 18 0 0 0
+ 22 23 1 1 1
+ 21 22 0 0 1
+ 20 21 2 2 3
+ 19 20 1 1 1
+H007 (3) 19 2 1 2
+H011 (13) 19 0 0 1
+H012 (10) 20 1 0 1
+H006 (12) 21 0 0 0
+H008 (4) 22 1 0 1
+H009 (11) 24 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7297
+Rescaled consistency index (RC) = 0.4125
+
+/------------------------------------------------------------------------- H002
+|
+| /--------------------- H010
+| |
+| /--------15 /---------- H003
+| | \---------14
+| /---------16 \---------- H005
+| | |
+| /--------17 \------------------------------- H013
+| | |
+| /---------18 \------------------------------------------ H001
+| | |
+24 | \---------------------------------------------------- H014
+| |
+| | /---------- H007
+| | /---------19
++--------23 | \---------- H011
+| | /--------20
+| | | \--------------------- H012
+| | /---------21
+| | | \------------------------------- H006
+| \-------------------22
+| \------------------------------------------ H008
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_18 9 1 0.500 1 --> 2
+ 10 1 1.000 1 ==> 2
+ node_18 --> node_17 8 1 1.000 1 ==> 2
+ node_17 --> node_16 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_16 --> node_15 6 1 0.500 1 --> 2
+ 7 1 0.500 1 --> 2
+ node_15 --> H010 5 1 1.000 2 ==> 1
+ node_15 --> node_14 3 1 1.000 2 ==> 1
+ node_14 --> H003 4 1 1.000 2 ==> 1
+ node_14 --> H005 12 1 0.333 2 ==> 1
+ node_16 --> H013 13 1 0.333 1 --> 0
+ node_17 --> H001 6 1 0.500 1 --> 2
+ 7 1 0.500 1 --> 2
+ node_23 --> node_22 11 1 0.500 2 ==> 1
+ node_21 --> node_20 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_20 --> node_19 11 1 0.500 1 ==> 2
+ node_19 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_20 --> H012 13 1 0.333 1 --> 0
+ node_22 --> H008 9 1 0.500 1 --> 2
+ node_24 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 87 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #87 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 22 0 0 0
+ 17 22 2 2 3
+ 16 17 3 3 4
+ 15 16 2 2 3
+H010 (2) 15 1 1 1
+H013 (6) 15 2 2 3
+ 14 15 1 1 1
+H003 (8) 14 1 1 1
+H005 (9) 14 1 1 1
+H001 (7) 16 0 0 0
+H014 (5) 17 0 0 0
+ 21 22 0 0 1
+ 19 21 2 2 3
+ 18 19 0 0 1
+H007 (3) 18 1 1 2
+H011 (13) 18 1 0 1
+H012 (10) 19 1 0 2
+ 20 21 2 0 2
+H008 (4) 20 1 1 1
+H006 (12) 20 0 0 0
+H009 (11) 22 2 1 2
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7297
+Rescaled consistency index (RC) = 0.4125
+
+/------------------------------------------------------------------------- H002
+|
+| /----------------------------- H010
+| |
+| +----------------------------- H013
+| /-------------15
+| | | /--------------- H003
+| | \------------14
+| /------------16 \--------------- H005
+| | |
++-------------17 \-------------------------------------------- H001
+| |
+22 \---------------------------------------------------------- H014
+|
+| /--------------- H007
+| /------------18
+| | \--------------- H011
+| /-------------19
+| | \----------------------------- H012
++---------------------------21
+| | /--------------- H008
+| \---------------------------20
+| \--------------- H006
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_17 9 1 0.500 1 ==> 2
+ 10 1 1.000 1 ==> 2
+ node_17 --> node_16 6 1 0.500 1 ==> 2
+ 7 1 0.500 1 ==> 2
+ 8 1 1.000 1 ==> 2
+ node_16 --> node_15 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_15 --> H010 5 1 1.000 2 ==> 1
+ node_15 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ node_15 --> node_14 3 1 1.000 2 ==> 1
+ node_14 --> H003 4 1 1.000 2 ==> 1
+ node_14 --> H005 12 1 0.333 2 ==> 1
+ node_21 --> node_19 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_18 --> H007 12 1 0.333 2 ==> 1
+ node_18 --> H011 13 1 0.333 0 --> 1
+ node_19 --> H012 11 1 0.500 2 --> 1
+ node_21 --> node_20 11 1 0.500 2 --> 1
+ 13 1 0.333 0 --> 1
+ node_20 --> H008 9 1 0.500 1 ==> 2
+ node_22 --> H009 12 1 0.333 2 ==> 1
+ 13 1 0.333 0 --> 1
+
+Tree number 88 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #88 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 22 0 0 0
+ 18 22 2 2 3
+ 17 18 1 1 4
+ 16 17 2 2 3
+ 15 16 2 0 2
+H010 (2) 15 1 1 1
+ 14 15 1 1 1
+H003 (8) 14 1 1 1
+H005 (9) 14 1 1 1
+H013 (6) 16 1 0 3
+H001 (7) 17 2 0 2
+H014 (5) 18 0 0 0
+ 21 22 1 1 1
+ 20 21 2 2 3
+ 19 20 1 1 1
+H007 (3) 19 2 1 2
+H011 (13) 19 0 0 1
+H012 (10) 20 1 0 1
+H008 (4) 21 1 1 1
+H006 (12) 21 0 0 0
+H009 (11) 22 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7297
+Rescaled consistency index (RC) = 0.4125
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------------ H010
+| |
+| /----------15 /------------ H003
+| | \----------14
+| /-----------16 \------------ H005
+| | |
+| /----------17 \------------------------------------ H013
+| | |
++----------18 \------------------------------------------------- H001
+| |
+22 \------------------------------------------------------------- H014
+|
+| /------------ H007
+| /----------19
+| | \------------ H011
+| /----------20
+| | \------------------------ H012
+| |
++-----------------------------------21------------------------------------ H008
+| |
+| \------------------------------------ H006
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_18 9 1 0.500 1 ==> 2
+ 10 1 1.000 1 ==> 2
+ node_18 --> node_17 8 1 1.000 1 ==> 2
+ node_17 --> node_16 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_16 --> node_15 6 1 0.500 1 --> 2
+ 7 1 0.500 1 --> 2
+ node_15 --> H010 5 1 1.000 2 ==> 1
+ node_15 --> node_14 3 1 1.000 2 ==> 1
+ node_14 --> H003 4 1 1.000 2 ==> 1
+ node_14 --> H005 12 1 0.333 2 ==> 1
+ node_16 --> H013 13 1 0.333 1 --> 0
+ node_17 --> H001 6 1 0.500 1 --> 2
+ 7 1 0.500 1 --> 2
+ node_22 --> node_21 11 1 0.500 2 ==> 1
+ node_21 --> node_20 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_20 --> node_19 11 1 0.500 1 ==> 2
+ node_19 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_20 --> H012 13 1 0.333 1 --> 0
+ node_21 --> H008 9 1 0.500 1 ==> 2
+ node_22 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 89 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #89 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 21 0 0 0
+ 17 21 2 2 3
+ 16 17 3 3 4
+ 15 16 2 2 3
+H010 (2) 15 1 1 1
+H013 (6) 15 3 2 3
+ 14 15 1 1 1
+H003 (8) 14 1 1 1
+H005 (9) 14 1 1 1
+H001 (7) 16 0 0 0
+H014 (5) 17 0 0 0
+ 20 21 1 1 1
+ 19 20 2 2 3
+ 18 19 1 1 1
+H007 (3) 18 2 1 2
+H011 (13) 18 0 0 1
+H012 (10) 19 1 0 1
+H008 (4) 20 1 1 1
+H006 (12) 20 0 0 0
+H009 (11) 21 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7297
+Rescaled consistency index (RC) = 0.4125
+
+/------------------------------------------------------------------------- H002
+|
+| /----------------------------- H010
+| |
+| +----------------------------- H013
+| /-------------15
+| | | /--------------- H003
+| | \------------14
+| /------------16 \--------------- H005
+| | |
++-------------17 \-------------------------------------------- H001
+| |
+21 \---------------------------------------------------------- H014
+|
+| /--------------- H007
+| /------------18
+| | \--------------- H011
+| /-------------19
+| | \----------------------------- H012
+| |
++---------------------------20-------------------------------------------- H008
+| |
+| \-------------------------------------------- H006
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_17 9 1 0.500 1 ==> 2
+ 10 1 1.000 1 ==> 2
+ node_17 --> node_16 6 1 0.500 1 ==> 2
+ 7 1 0.500 1 ==> 2
+ 8 1 1.000 1 ==> 2
+ node_16 --> node_15 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_15 --> H010 5 1 1.000 2 ==> 1
+ node_15 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_15 --> node_14 3 1 1.000 2 ==> 1
+ node_14 --> H003 4 1 1.000 2 ==> 1
+ node_14 --> H005 12 1 0.333 2 ==> 1
+ node_21 --> node_20 11 1 0.500 2 ==> 1
+ node_20 --> node_19 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_19 --> node_18 11 1 0.500 1 ==> 2
+ node_18 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_19 --> H012 13 1 0.333 1 --> 0
+ node_20 --> H008 9 1 0.500 1 ==> 2
+ node_21 --> H009 12 1 0.333 2 ==> 1
diff --git a/trunk/test/paup/unrooted_absent/localisation/test.tree b/trunk/test/paup/unrooted_absent/localisation/test.tree
new file mode 100644
index 0000000000000000000000000000000000000000..bb9f3665915e46a5980c56560cecd98d4a27fe75
--- /dev/null
+++ b/trunk/test/paup/unrooted_absent/localisation/test.tree
@@ -0,0 +1,121 @@
+#NEXUS
+
+Begin trees; [Treefile saved Fri Jan 13 11:19:32 2006]
+[!
+>Data file = /home/cbardel/recherche/logiciel/altree/test/paup/unrooted_absent/localisation/et_caco.paup
+>Heuristic search settings:
+> Optimality criterion = parsimony
+> Character-status summary:
+> 1 character is excluded
+> Of the remaining 12 included characters:
+> All characters are of type 'unord'
+> All characters have equal weight
+> 2 characters are parsimony-uninformative
+> Number of (included) parsimony-informative characters = 10
+> Starting tree(s) obtained via stepwise addition
+> Addition sequence: simple (reference taxon = H002)
+> Number of trees held at each step during stepwise addition = 1
+> Branch-swapping algorithm: tree-bisection-reconnection (TBR)
+> Steepest descent option not in effect
+> 'MaxTrees' setting = 2000 (will not be increased)
+> Branches collapsed (creating polytomies) if maximum branch length is zero
+> 'MulTrees' option in effect
+> Topological constraints not enforced
+> Trees are unrooted
+>
+>Heuristic search completed
+> Total number of rearrangements tried = 69978
+> Score of best tree(s) found = 20
+> Number of trees retained = 89
+> Time used = <1 sec (CPU time = 0.09 sec)
+]
+tree PAUP_1 = [&U] (H002,((((H010,H001,(H003,H005)),H013),H007,H012,H011),(H008,H014),H009,H006));
+tree PAUP_2 = [&U] (H002,((((((H010,(H003,H005)),H001),H013),H014),H008),(H007,H012,H011),H009,H006));
+tree PAUP_3 = [&U] (H002,((((H010,H001,(H003,H005)),H013),H007,H012,H011),((H008,H014),H006),H009));
+tree PAUP_4 = [&U] (H002,((((((H010,H001,(H003,H005)),H013),H007,H011),H012),(H008,H014),H006),H009));
+tree PAUP_5 = [&U] (H002,((((((H010,H001,(H003,H005)),H013),H007,H011),H012),((H008,H014),H006)),H009));
+tree PAUP_6 = [&U] (H002,(((((H010,H001,(H003,H005)),H013),(H007,H012,H011)),(H008,H014)),H009,H006));
+tree PAUP_7 = [&U] (H002,(((((H010,H001,(H003,H005)),H013),(H007,H012,H011)),H008,H014),H009,H006));
+tree PAUP_8 = [&U] (H002,(((((((H010,H001,(H003,H005)),H013),(H007,H012,H011)),H014),H008),H006),H009));
+tree PAUP_9 = [&U] (H002,((((((H010,H001,(H003,H005)),H013),H012,H011),H007),H009),((H008,H014),H006)));
+tree PAUP_10 = [&U] (H002,((((H010,H001,(H003,H005)),H013),H007,H012,H011),((H008,H006),H014),H009));
+tree PAUP_11 = [&U] (H002,(((((((H010,H001,(H003,H005)),H013),H007,H011),H012),H006),(H008,H014)),H009));
+tree PAUP_12 = [&U] (H002,((((H010,H001,(H003,H005)),H013),H007,H012,H011),(H008,H006),H014,H009));
+tree PAUP_13 = [&U] (H002,((((((H010,(H003,H005)),H013),H001),H014),H008),(H007,H012,H011),H009,H006));
+tree PAUP_14 = [&U] (H002,(((((((H010,(H003,H005)),H001),H013),H014),H008),H006),(H007,H012,H011),H009));
+tree PAUP_15 = [&U] (H002,(((((H010,(H003,H005)),H001),H013),H014),(H007,H012,H011),(H008,H006),H009));
+tree PAUP_16 = [&U] (H002,((((((H010,(H003,H005)),H001),H013),H014),(H007,H012,H011)),(H008,H006),H009));
+tree PAUP_17 = [&U] (H002,(((((H010,H001,(H003,H005)),H013),H014),H007,H012,H011),(H008,H006),H009));
+tree PAUP_18 = [&U] (H002,((((((H010,H013,(H003,H005)),H001),H014),H008),H006),(H007,H012,H011),H009));
+tree PAUP_19 = [&U] (H002,((((((H010,(H003,H005)),H001),H013),H014),(H008,H006)),(H007,H012,H011),H009));
+tree PAUP_20 = [&U] (H002,(((((((H010,(H003,H005)),H013),H001),H014),H008),H006),(H007,H012,H011),H009));
+tree PAUP_21 = [&U] (H002,((((((H010,(H003,H005)),H001),H013),H014),H008),(((H007,H011),H012),H006),H009));
+tree PAUP_22 = [&U] (H002,((((((H010,H001,(H003,H005)),H013),H014),H008),H006),(H007,H012,H011),H009));
+tree PAUP_23 = [&U] (H002,((((((((H010,(H003,H005)),H001),H013),H014),H008),H006),((H007,H011),H012)),H009));
+tree PAUP_24 = [&U] (H002,(((((((H010,(H003,H005)),H001),H013),H014),H008),(((H007,H011),H012),H006)),H009));
+tree PAUP_25 = [&U] (H002,(((((((H010,(H003,H005)),H001),H013),H014),H008),((H007,H011),H012),H006),H009));
+tree PAUP_26 = [&U] (H002,(((((((H010,(H003,H005)),H001),H013),H014),H008),H006),((H007,(H012,H011)),H009)));
+tree PAUP_27 = [&U] (H002,((((((H010,H001,(H003,H005)),H013),H012,H011),H007),H009),(H008,H014),H006));
+tree PAUP_28 = [&U] (H002,((((((H010,H001,(H003,H005)),H013),H012,H011),H007),H009),(H008,H006),H014));
+tree PAUP_29 = [&U] (H002,((((((H010,H001,(H003,H005)),H013),H012,H011),H007),H009),((H008,H006),H014)));
+tree PAUP_30 = [&U] (H002,((((((H010,H001,(H003,H005)),H013),H014),H008),H006),((H007,(H012,H011)),H009)));
+tree PAUP_31 = [&U] (H002,((((((H010,H013,(H003,H005)),H001),H014),H008),H006),((H007,(H012,H011)),H009)));
+tree PAUP_32 = [&U] (H002,(((((((H010,H001,(H003,H005)),H013),H014),H012,H011),H007),H009),(H008,H006)));
+tree PAUP_33 = [&U] (H002,((((((((H010,H001,(H003,H005)),H013),H007,H011),H012),H006),H008),H014),H009));
+tree PAUP_34 = [&U] (H002,((((((H010,H001,(H003,H005)),H013),H007,H011),H012),H006),(H008,H014),H009));
+tree PAUP_35 = [&U] (H002,(((((((H010,H001,(H003,H005)),H013),H014),H008),H006),((H007,H011),H012)),H009));
+tree PAUP_36 = [&U] (H002,((((((H010,H001,(H003,H005)),H013),H007,H011),H012),(H008,H006)),H014,H009));
+tree PAUP_37 = [&U] (H002,(((((((H010,H001,(H003,H005)),H013),H014),H007,H011),H012),(H008,H006)),H009));
+tree PAUP_38 = [&U] (H002,(((((((H010,H013,(H003,H005)),H001),H014),H008),H006),((H007,H011),H012)),H009));
+tree PAUP_39 = [&U] (H002,((((((H010,H001,(H003,H005)),H013),(H007,H012,H011)),H014),H008),H009,H006));
+tree PAUP_40 = [&U] (H002,(((((H010,H001,(H003,H005)),H013),(H007,H012,H011)),H014),(H008,H006),H009));
+tree PAUP_41 = [&U] (H002,(((((H010,H001,(H003,H005)),H013),(H007,H012,H011)),((H008,H006),H014)),H009));
+tree PAUP_42 = [&U] (H002,(((((H010,H001,(H003,H005)),H013),(H007,H012,H011)),(H008,H006),H014),H009));
+tree PAUP_43 = [&U] (H002,(((((H010,H001,(H003,H005)),H013),H014),(H007,H012,H011)),(H008,H006),H009));
+tree PAUP_44 = [&U] (H002,(((((((H010,H001,(H003,H005)),H013),H014),H007,H011),H012),H008,H006),H009));
+tree PAUP_45 = [&U] (H002,(((((H010,H001,(H003,H005)),H013),H014),H008),(H007,H012,H011),H009,H006));
+tree PAUP_46 = [&U] (H002,((((((H010,H001,(H003,H005)),H013),H014),H008),((H007,H011),H012),H006),H009));
+tree PAUP_47 = [&U] (H002,((((((H010,H001,(H003,H005)),H013),H014),H008),(((H007,H011),H012),H006)),H009));
+tree PAUP_48 = [&U] (H002,((((((H010,H001,(H003,H005)),H013),(H007,H012,H011)),H014),(H008,H006)),H009));
+tree PAUP_49 = [&U] (H002,((((((H010,H001,(H003,H005)),H013),H007,H011),H012),H008,H006),H014,H009));
+tree PAUP_50 = [&U] (H002,(((((H010,H001,(H003,H005)),H013),H014),(H008,H006)),(H007,H012,H011),H009));
+tree PAUP_51 = [&U] (H002,(((((H010,H013,(H003,H005)),H001),H014),(H008,H006)),(H007,H012,H011),H009));
+tree PAUP_52 = [&U] (H002,((((((H010,H013,(H003,H005)),H001),H014),H008),(((H007,H011),H012),H006)),H009));
+tree PAUP_53 = [&U] (H002,((((((H010,(H003,H005)),H013),H001),H014),(H008,H006)),(H007,H012,H011),H009));
+tree PAUP_54 = [&U] (H002,(((((H010,(H003,H005)),H013),H001),H014),(H007,H012,H011),(H008,H006),H009));
+tree PAUP_55 = [&U] (H002,((((((H010,(H003,H005)),H013),H001),H014),H008),((H007,(H012,H011)),H009),H006));
+tree PAUP_56 = [&U] (H002,((((((H010,(H003,H005)),H013),H001),H014),H008),(((H007,H011),H012),H006),H009));
+tree PAUP_57 = [&U] (H002,(((((H010,H013,(H003,H005)),H001),H014),H008),(H007,H012,H011),H009,H006));
+tree PAUP_58 = [&U] (H002,(((((H010,(H003,H005)),H001),H013),H014),((H007,(H012,H011)),H009),(H008,H006)));
+tree PAUP_59 = [&U] (H002,((((((H010,(H003,H005)),H001),H013),H014),(H008,H006)),((H007,(H012,H011)),H009)));
+tree PAUP_60 = [&U] (H002,((((H010,H013,(H003,H005)),H001),H014),((H007,(H012,H011)),H009),(H008,H006)));
+tree PAUP_61 = [&U] (H002,((((((H010,(H003,H005)),H001),H013),H014),H008),((H007,(H012,H011)),H009),H006));
+tree PAUP_62 = [&U] (H002,(((((H010,(H003,H005)),H001),H013),H014),(((H007,H011),H012),(H008,H006)),H009));
+tree PAUP_63 = [&U] (H002,(((((H010,(H003,H005)),H001),H013),H014),(((H007,H011),H012),H008,H006),H009));
+tree PAUP_64 = [&U] (H002,(((((H010,(H003,H005)),H013),H001),H014),((H007,(H012,H011)),H009),(H008,H006)));
+tree PAUP_65 = [&U] (H002,((((H010,H001,(H003,H005)),H013),H014),((H007,(H012,H011)),H009),(H008,H006)));
+tree PAUP_66 = [&U] (H002,((((H010,H013,(H003,H005)),H001),H014),(H007,H012,H011),(H008,H006),H009));
+tree PAUP_67 = [&U] (H002,((((H010,H001,(H003,H005)),H013),H014),(((H007,H011),H012),(H008,H006)),H009));
+tree PAUP_68 = [&U] (H002,(((((H010,H001,(H003,H005)),H013),H014),((((H007,H011),H012),H006),H008)),H009));
+tree PAUP_69 = [&U] (H002,((((H010,H001,(H003,H005)),H013),H014),(((H007,H011),H012),H008,H006),H009));
+tree PAUP_70 = [&U] (H002,((((H010,H001,(H003,H005)),H013),H014),(H007,H012,H011),(H008,H006),H009));
+tree PAUP_71 = [&U] (H002,(((((H010,H001,(H003,H005)),H013),H014),(H008,H006)),((H007,(H012,H011)),H009)));
+tree PAUP_72 = [&U] (H002,((((((H010,H013,(H003,H005)),H001),H014),H008),((H007,H011),H012),H006),H009));
+tree PAUP_73 = [&U] (H002,((((((H010,(H003,H005)),H001),H013),H014),((((H007,H011),H012),H006),H008)),H009));
+tree PAUP_74 = [&U] (H002,(((((((H010,(H003,H005)),H013),H001),H014),H008),H006),((H007,(H012,H011)),H009)));
+tree PAUP_75 = [&U] (H002,((((((((H010,(H003,H005)),H013),H001),H014),H008),H006),((H007,H011),H012)),H009));
+tree PAUP_76 = [&U] (H002,(((((((H010,(H003,H005)),H013),H001),H014),H008),(((H007,H011),H012),H006)),H009));
+tree PAUP_77 = [&U] (H002,(((((((H010,(H003,H005)),H013),H001),H014),H008),((H007,H011),H012),H006),H009));
+tree PAUP_78 = [&U] (H002,((((((H010,(H003,H005)),H013),H001),H014),(H008,H006)),((H007,(H012,H011)),H009)));
+tree PAUP_79 = [&U] (H002,(((((H010,H001,(H003,H005)),H013),H014),H008),((H007,(H012,H011)),H009),H006));
+tree PAUP_80 = [&U] (H002,(((((H010,H013,(H003,H005)),H001),H014),(H008,H006)),((H007,(H012,H011)),H009)));
+tree PAUP_81 = [&U] (H002,(((((H010,H013,(H003,H005)),H001),H014),H008),((H007,(H012,H011)),H009),H006));
+tree PAUP_82 = [&U] (H002,(((((H010,H013,(H003,H005)),H001),H014),((((H007,H011),H012),H006),H008)),H009));
+tree PAUP_83 = [&U] (H002,(((((H010,H001,(H003,H005)),H013),H014),H008),(((H007,H011),H012),H006),H009));
+tree PAUP_84 = [&U] (H002,(((((H010,H013,(H003,H005)),H001),H014),H008),(((H007,H011),H012),H006),H009));
+tree PAUP_85 = [&U] (H002,(((((H010,(H003,H005)),H013),H001),H014),(((H007,H011),H012),(H008,H006)),H009));
+tree PAUP_86 = [&U] (H002,((((((H010,(H003,H005)),H013),H001),H014),((((H007,H011),H012),H006),H008)),H009));
+tree PAUP_87 = [&U] (H002,((((H010,H013,(H003,H005)),H001),H014),(((H007,H011),H012),(H008,H006)),H009));
+tree PAUP_88 = [&U] (H002,(((((H010,(H003,H005)),H013),H001),H014),(((H007,H011),H012),H008,H006),H009));
+tree PAUP_89 = [&U] (H002,((((H010,H013,(H003,H005)),H001),H014),(((H007,H011),H012),H008,H006),H009));
+End;
diff --git a/trunk/test/paup/unrooted_present/association/1_caco.asso b/trunk/test/paup/unrooted_present/association/1_caco.asso
new file mode 100644
index 0000000000000000000000000000000000000000..dd0ad52ff83f25ecd278663865480602092e5ace
--- /dev/null
+++ b/trunk/test/paup/unrooted_present/association/1_caco.asso
@@ -0,0 +1,57 @@
+
+ /----* H010 case/control:7/5
+ | Site: 5 Sens: 2-->1
+ |----* H001 case/control:11/9
+ | Site: 1 Sens: 2-->1
+ | Site: 2 Sens: 2-->1
+ | /----* H003 case/control:5/6
+ | | Site: 4 Sens: 2-->1
+ |----* 15 case/control:12/13
+ | | Site: 3 Sens: 2-->1
+ | \----* H005 case/control:7/7
+ | Site: 12 Sens: 2-->1
+-----* 16 case/control:200/200
+ |
+ | [0] ddl=4 chi2=9.33 p_value_chi2=0.0535
+ | [1] ddl=6 chi2=11.24 p_value_chi2=0.065
+ | [2] ddl=9 chi2=23.55 p_value_chi2=0.004
+ | [3] ddl=12 chi2=25.20 p_value_chi2=0.009
+ | [4] ddl=13 chi2=25.55 p_value_chi2=0.01
+ |----* H000 case/control:98/126
+ | /----* H013 case/control:2/4
+ \----* 17 case/control:72/47
+ | Site: 6 Sens: 2-->1
+ | Site: 7 Sens: 2-->1
+ | /----* H007 case/control:7/13
+ | | Site: 12 Sens: 2-->1
+ | |----* H012 case/control:1/4
+ | | Site: 11 Sens: 2-->1
+ \----* 18 case/control:70/43
+ | Site: 8 Sens: 2-->1
+ | Site: 9 Sens: 2-->1
+ | Site: 10 Sens: 2-->1
+ |----* H011 case/control:5/1
+ | /----* H002 case/control:8/6
+ | | /----* H008 case/control:9/2
+ | | | Site: 11 Sens: 2-->1
+ | |----* 19 case/control:13/4
+ | | | Site: 9 Sens: 1-->2
+ | | \----* H014 case/control:4/2
+ | | Site: 10 Sens: 1-->2
+ \----* 20 case/control:57/25
+ | Site: 1 Sens: 2-->1
+ | Site: 2 Sens: 2-->1
+ |----* H009 case/control:8/2
+ | Site: 12 Sens: 2-->1
+ \----* H006 case/control:28/13
+ Site: 11 Sens: 2-->1
+
+ Number of permutation: 1
+
+p_val for each level:
+level 1 p-value (non corrected) 0
+level 2 p-value (non corrected) 0
+level 3 p-value (non corrected) 0
+level 4 p-value (non corrected) 0
+level 5 p-value (non corrected) 0
+corrected minimal p_value in the tree: 0
diff --git a/trunk/test/paup/unrooted_present/association/caco.paup b/trunk/test/paup/unrooted_present/association/caco.paup
new file mode 100644
index 0000000000000000000000000000000000000000..28c436562f8c789ee1a3ccdf460365935ec7c523
--- /dev/null
+++ b/trunk/test/paup/unrooted_present/association/caco.paup
@@ -0,0 +1,36 @@
+#Nexus
+Begin data;
+dimension ntax=14 nchar=12;
+format symbols="0123456789" missing=?;
+matrix
+H002 112221111122
+H010 222212222222
+H007 222221111121
+H008 112221112112
+H014 112221112222
+H013 222221122222
+H001 112222222222
+H003 221122222222
+[H004 222222222222]
+H005 221222222221
+H012 222221111112
+H009 112221111121
+H006 112221111112
+H011 222221111122
+H000 222222222222
+;
+end;
+begin assumptions;
+end;
+begin paup;
+set nowarnreset autoclose maxtrees = 2000 increase= no [- Auto AutoInc = 100] monitor = no taxlabels = full warnroot=no opt=deltran [- acctran];
+hsearch;
+savetrees from=1 to=1000 file= test.tree root=no format=altnexus;
+cleartrees nowarn=yes;
+gettrees rooted=no file=test.tree;
+log file = test.res.log replace= yes [- no];
+describetrees all /plot=cladogram [- phylogram] brlens=yes apolist=yes;
+log stop;
+end;
+quit;
+[WARNING, this file is designed for bi-allelic data. If it is not the case, you may have to modify this input file, for example by specifying the ordered option in the typeset command in the assumption block]
diff --git a/trunk/test/paup/unrooted_present/association/nb_cas_control.txt b/trunk/test/paup/unrooted_present/association/nb_cas_control.txt
new file mode 100644
index 0000000000000000000000000000000000000000..40b340628a07d72243de522ba854df3e7a8b6d26
--- /dev/null
+++ b/trunk/test/paup/unrooted_present/association/nb_cas_control.txt
@@ -0,0 +1,14 @@
+H002 m008 c006
+H010 m007 c005
+H007 m007 c013
+H008 m009 c002
+H014 m004 c002
+H013 m002 c004
+H001 m011 c009
+H003 m005 c006
+H005 m007 c007
+H012 m001 c004
+H009 m008 c002
+H006 m028 c013
+H011 m005 c001
+H000 m098 c126
diff --git a/trunk/test/paup/unrooted_present/association/run_altree b/trunk/test/paup/unrooted_present/association/run_altree
new file mode 100755
index 0000000000000000000000000000000000000000..198e74c0b1f5302cdc0badea01cdb12734e0d951
--- /dev/null
+++ b/trunk/test/paup/unrooted_present/association/run_altree
@@ -0,0 +1,12 @@
+#!/bin/sh -x
+
+# to run paup
+paup caco.paup
+
+# to perform the association test.
+# only one permutation is done: the corrected p_value doesn't mean
+# anything!
+# the --outgroup option is specified because the tree must be rooted for
+# the association test
+../../../../altree -i test.res.log -j nb_cas_control.txt -a -t SNP \
+ --outgroup H000 -p paup -r 1 --tree-to-analyse 1 -o 1_caco.asso
diff --git a/trunk/test/paup/unrooted_present/association/test.res.log b/trunk/test/paup/unrooted_present/association/test.res.log
new file mode 100644
index 0000000000000000000000000000000000000000..a6842161a830690b0bc2fd3c0a1e108a3129b771
--- /dev/null
+++ b/trunk/test/paup/unrooted_present/association/test.res.log
@@ -0,0 +1,8386 @@
+
+P A U P *
+Portable version 4.0b10 for Unix
+Tue Jan 10 20:35:47 2006
+
+ -----------------------------NOTICE-----------------------------
+ This is a beta-test version. Please report any crashes,
+ apparent calculation errors, or other anomalous results.
+ There are no restrictions on publication of results obtained
+ with this version, but you should check the WWW site
+ frequently for bug announcements and/or updated versions.
+ See the README file on the distribution media for details.
+ ----------------------------------------------------------------
+
+Tree description:
+
+ Unrooted tree(s) rooted using outgroup method
+ Optimality criterion = parsimony
+ Character-status summary:
+ Of 12 total characters:
+ All characters are of type 'unord'
+ All characters have equal weight
+ 2 characters are parsimony-uninformative
+ Number of parsimony-informative characters = 10
+ Character-state optimization: Delayed transformation (DELTRAN)
+
+Tree number 1 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #1 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 20 0 0 0
+ 18 20 2 2 2
+ 17 18 3 3 3
+ 16 17 2 2 2
+H010 (2) 16 1 1 1
+H001 (7) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H013 (6) 17 0 0 0
+H007 (3) 18 1 1 1
+H012 (10) 18 1 1 1
+H011 (13) 18 0 0 0
+ 19 20 1 1 1
+H008 (4) 19 1 1 1
+H014 (5) 19 1 1 1
+H009 (11) 20 1 1 1
+H006 (12) 20 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /----------------------------- H010
+| |
+| +----------------------------- H001
+| |
+| /-------------16 /--------------- H003
+| | +------------15
+| | | \--------------- H005
+| /------------17 |
+| | | \----------------------------- H000
+| | |
+| | \-------------------------------------------- H013
+20 |
++-------------18---------------------------------------------------------- H007
+| |
+| +---------------------------------------------------------- H012
+| |
+| \---------------------------------------------------------- H011
+|
+| /--------------- H008
++--------------------------------------------------------19
+| \--------------- H014
+|
++------------------------------------------------------------------------- H009
+|
+\------------------------------------------------------------------------- H006
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_20 --> node_18 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_18 --> node_17 8 1 1.000 1 ==> 2
+ 9 1 0.500 1 ==> 2
+ 10 1 0.500 1 ==> 2
+ node_17 --> node_16 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_18 --> H007 12 1 0.333 2 ==> 1
+ node_18 --> H012 11 1 0.333 2 ==> 1
+ node_20 --> node_19 9 1 0.500 1 ==> 2
+ node_19 --> H008 11 1 0.333 2 ==> 1
+ node_19 --> H014 10 1 0.500 1 ==> 2
+ node_20 --> H009 12 1 0.333 2 ==> 1
+ node_20 --> H006 11 1 0.333 2 ==> 1
+
+Tree number 2 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #2 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 22 0 0 0
+ 20 22 1 1 1
+ 19 20 1 1 1
+ 18 19 1 1 3
+ 17 18 2 2 2
+ 16 17 2 0 2
+H010 (2) 16 1 1 1
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H001 (7) 17 0 0 2
+H013 (6) 18 2 0 2
+H014 (5) 19 0 0 0
+H008 (4) 20 1 1 1
+ 21 22 2 2 2
+H007 (3) 21 1 1 1
+H012 (10) 21 1 1 1
+H011 (13) 21 0 0 0
+H009 (11) 22 1 1 1
+H006 (12) 22 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /--------------------- H010
+| |
+| | /---------- H003
+| /--------16---------15
+| | | \---------- H005
+| | |
+| /---------17 \--------------------- H000
+| | |
+| /--------18 \------------------------------- H001
+| | |
+| /---------19 \------------------------------------------ H013
+22 | |
++--------20 \---------------------------------------------------- H014
+| |
+| \--------------------------------------------------------------- H008
+|
+| /---------- H007
+| |
++-------------------------------------------------------------21---------- H012
+| |
+| \---------- H011
+|
++------------------------------------------------------------------------- H009
+|
+\------------------------------------------------------------------------- H006
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_20 9 1 1.000 1 ==> 2
+ node_20 --> node_19 10 1 1.000 1 ==> 2
+ node_19 --> node_18 8 1 1.000 1 ==> 2
+ node_18 --> node_17 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_17 --> node_16 1 1 0.333 1 --> 2
+ 2 1 0.333 1 --> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_18 --> H013 1 1 0.333 1 --> 2
+ 2 1 0.333 1 --> 2
+ node_20 --> H008 11 1 0.333 2 ==> 1
+ node_22 --> node_21 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_21 --> H007 12 1 0.333 2 ==> 1
+ node_21 --> H012 11 1 0.333 2 ==> 1
+ node_22 --> H009 12 1 0.333 2 ==> 1
+ node_22 --> H006 11 1 0.333 2 ==> 1
+
+Tree number 3 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #3 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 21 0 0 0
+ 18 21 2 2 2
+ 17 18 3 3 3
+ 16 17 2 2 2
+H010 (2) 16 1 1 1
+H001 (7) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H013 (6) 17 0 0 0
+H007 (3) 18 1 1 1
+H012 (10) 18 1 1 1
+H011 (13) 18 0 0 0
+ 20 21 0 0 1
+ 19 20 1 1 1
+H008 (4) 19 1 0 1
+H014 (5) 19 1 1 2
+H006 (12) 20 1 0 1
+H009 (11) 21 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /----------------------------- H010
+| |
+| +----------------------------- H001
+| |
+| /-------------16 /--------------- H003
+| | +------------15
+| | | \--------------- H005
+| /------------17 |
+| | | \----------------------------- H000
+| | |
+| | \-------------------------------------------- H013
+21 |
++-------------18---------------------------------------------------------- H007
+| |
+| +---------------------------------------------------------- H012
+| |
+| \---------------------------------------------------------- H011
+|
+| /--------------- H008
+| /------------19
+| | \--------------- H014
++------------------------------------------20
+| \----------------------------- H006
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_18 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_18 --> node_17 8 1 1.000 1 ==> 2
+ 9 1 0.500 1 ==> 2
+ 10 1 0.500 1 ==> 2
+ node_17 --> node_16 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_18 --> H007 12 1 0.333 2 ==> 1
+ node_18 --> H012 11 1 0.333 2 ==> 1
+ node_20 --> node_19 9 1 0.500 1 ==> 2
+ node_19 --> H008 11 1 0.333 2 --> 1
+ node_19 --> H014 10 1 0.500 1 ==> 2
+ node_20 --> H006 11 1 0.333 2 --> 1
+ node_21 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 4 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #4 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 22 0 0 0
+ 21 22 0 0 1
+ 19 21 2 2 2
+ 18 19 0 0 1
+ 17 18 3 3 3
+ 16 17 2 2 2
+H010 (2) 16 1 1 1
+H001 (7) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H013 (6) 17 0 0 0
+H007 (3) 18 1 1 1
+H011 (13) 18 0 0 0
+H012 (10) 19 1 0 1
+ 20 21 1 1 1
+H008 (4) 20 1 0 1
+H014 (5) 20 1 1 2
+H006 (12) 21 1 0 1
+H009 (11) 22 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /--------------------- H010
+| |
+| +--------------------- H001
+| |
+| /--------16 /---------- H003
+| | +---------15
+| | | \---------- H005
+| /---------17 |
+| | | \--------------------- H000
+| | |
+| | \------------------------------- H013
+22 /--------18
+| | +------------------------------------------ H007
+| | |
+| /---------19 \------------------------------------------ H011
+| | |
+| | \---------------------------------------------------- H012
+| |
++--------21 /---------- H008
+| +---------------------------------------------------20
+| | \---------- H014
+| |
+| \--------------------------------------------------------------- H006
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_19 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_18 --> node_17 8 1 1.000 1 ==> 2
+ 9 1 0.500 1 ==> 2
+ 10 1 0.500 1 ==> 2
+ node_17 --> node_16 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_18 --> H007 12 1 0.333 2 ==> 1
+ node_19 --> H012 11 1 0.333 2 --> 1
+ node_21 --> node_20 9 1 0.500 1 ==> 2
+ node_20 --> H008 11 1 0.333 2 --> 1
+ node_20 --> H014 10 1 0.500 1 ==> 2
+ node_21 --> H006 11 1 0.333 2 --> 1
+ node_22 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 5 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #5 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 23 0 0 0
+ 22 23 0 0 1
+ 19 22 2 2 2
+ 18 19 0 0 1
+ 17 18 3 3 3
+ 16 17 2 2 2
+H010 (2) 16 1 1 1
+H001 (7) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H013 (6) 17 0 0 0
+H007 (3) 18 1 1 1
+H011 (13) 18 0 0 0
+H012 (10) 19 1 0 1
+ 21 22 0 0 1
+ 20 21 1 1 1
+H008 (4) 20 1 0 1
+H014 (5) 20 1 1 2
+H006 (12) 21 1 0 1
+H009 (11) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /--------------------- H010
+| |
+| +--------------------- H001
+| |
+| /--------16 /---------- H003
+| | +---------15
+| | | \---------- H005
+| /---------17 |
+| | | \--------------------- H000
+| | |
+| | \------------------------------- H013
+23 /--------18
+| | +------------------------------------------ H007
+| | |
+| /---------19 \------------------------------------------ H011
+| | |
+| | \---------------------------------------------------- H012
+| |
++--------22 /---------- H008
+| | /---------20
+| | | \---------- H014
+| \----------------------------------------21
+| \--------------------- H006
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_19 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_18 --> node_17 8 1 1.000 1 ==> 2
+ 9 1 0.500 1 ==> 2
+ 10 1 0.500 1 ==> 2
+ node_17 --> node_16 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_18 --> H007 12 1 0.333 2 ==> 1
+ node_19 --> H012 11 1 0.333 2 --> 1
+ node_21 --> node_20 9 1 0.500 1 ==> 2
+ node_20 --> H008 11 1 0.333 2 --> 1
+ node_20 --> H014 10 1 0.500 1 ==> 2
+ node_21 --> H006 11 1 0.333 2 --> 1
+ node_23 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 6 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #6 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 22 0 0 0
+ 21 22 0 0 1
+ 19 21 2 2 2
+ 17 19 3 2 3
+ 16 17 2 2 2
+H010 (2) 16 1 1 1
+H001 (7) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H013 (6) 17 0 0 0
+ 18 19 0 0 1
+H007 (3) 18 1 1 1
+H012 (10) 18 1 1 1
+H011 (13) 18 0 0 0
+ 20 21 1 0 1
+H008 (4) 20 1 1 1
+H014 (5) 20 1 1 1
+H009 (11) 22 1 1 1
+H006 (12) 22 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------------ H010
+| |
+| +------------------------ H001
+| |
+| /----------16 /------------ H003
+| | +----------15
+| | | \------------ H005
+| /-----------17 |
+| | | \------------------------ H000
+| | |
+| | \------------------------------------ H013
+22 /----------19
+| | | /------------ H007
+| | | |
+| | \-----------------------------------18------------ H012
++----------21 |
+| | \------------ H011
+| |
+| | /------------ H008
+| \-----------------------------------------------20
+| \------------ H014
+|
++------------------------------------------------------------------------- H009
+|
+\------------------------------------------------------------------------- H006
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_19 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_19 --> node_17 8 1 1.000 1 ==> 2
+ 9 1 0.500 1 --> 2
+ 10 1 0.500 1 ==> 2
+ node_17 --> node_16 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_18 --> H007 12 1 0.333 2 ==> 1
+ node_18 --> H012 11 1 0.333 2 ==> 1
+ node_21 --> node_20 9 1 0.500 1 --> 2
+ node_20 --> H008 11 1 0.333 2 ==> 1
+ node_20 --> H014 10 1 0.500 1 ==> 2
+ node_22 --> H009 12 1 0.333 2 ==> 1
+ node_22 --> H006 11 1 0.333 2 ==> 1
+
+Tree number 7 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #7 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 21 0 0 0
+ 20 21 1 1 1
+ 19 20 2 2 2
+ 17 19 2 2 2
+ 16 17 2 2 2
+H010 (2) 16 1 1 1
+H001 (7) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H013 (6) 17 0 0 0
+ 18 19 1 1 1
+H007 (3) 18 1 1 1
+H012 (10) 18 1 1 1
+H011 (13) 18 0 0 0
+H008 (4) 20 1 1 1
+H014 (5) 20 1 1 1
+H009 (11) 21 1 1 1
+H006 (12) 21 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------------ H010
+| |
+| +------------------------ H001
+| |
+| /----------16 /------------ H003
+| | +----------15
+| | | \------------ H005
+| /-----------17 |
+| | | \------------------------ H000
+| | |
+| | \------------------------------------ H013
+21 /----------19
+| | | /------------ H007
+| | | |
+| | \-----------------------------------18------------ H012
+| | |
++----------20 \------------ H011
+| |
+| +------------------------------------------------------------- H008
+| |
+| \------------------------------------------------------------- H014
+|
++------------------------------------------------------------------------- H009
+|
+\------------------------------------------------------------------------- H006
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_20 9 1 0.500 1 ==> 2
+ node_20 --> node_19 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_19 --> node_17 8 1 1.000 1 ==> 2
+ 10 1 0.500 1 ==> 2
+ node_17 --> node_16 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_19 --> node_18 9 1 0.500 2 ==> 1
+ node_18 --> H007 12 1 0.333 2 ==> 1
+ node_18 --> H012 11 1 0.333 2 ==> 1
+ node_20 --> H008 11 1 0.333 2 ==> 1
+ node_20 --> H014 10 1 0.500 1 ==> 2
+ node_21 --> H009 12 1 0.333 2 ==> 1
+ node_21 --> H006 11 1 0.333 2 ==> 1
+
+Tree number 8 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #8 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 23 0 0 0
+ 22 23 0 0 1
+ 21 22 1 1 1
+ 20 21 0 0 2
+ 19 20 2 2 2
+ 17 19 2 1 2
+ 16 17 2 2 2
+H010 (2) 16 1 1 1
+H001 (7) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H013 (6) 17 0 0 0
+ 18 19 1 1 2
+H007 (3) 18 1 1 1
+H012 (10) 18 1 1 1
+H011 (13) 18 0 0 0
+H014 (5) 20 1 0 1
+H008 (4) 21 1 0 1
+H006 (12) 22 1 0 1
+H009 (11) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------ H010
+| |
+| +------------------ H001
+| |
+| /-------16 /--------- H003
+| | +-------15
+| | | \--------- H005
+| /--------17 |
+| | | \------------------ H000
+| | |
+| | \--------------------------- H013
+23 /-------19
+| | | /--------- H007
+| | | |
+| | \--------------------------18--------- H012
+| /-------20 |
+| | | \--------- H011
+| | |
+| /-------21 \---------------------------------------------- H014
+| | |
++-------22 \------------------------------------------------------- H008
+| |
+| \---------------------------------------------------------------- H006
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_21 9 1 0.500 1 ==> 2
+ node_20 --> node_19 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_19 --> node_17 8 1 1.000 1 ==> 2
+ 10 1 0.500 1 --> 2
+ node_17 --> node_16 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_19 --> node_18 9 1 0.500 2 ==> 1
+ node_18 --> H007 12 1 0.333 2 ==> 1
+ node_18 --> H012 11 1 0.333 2 ==> 1
+ node_20 --> H014 10 1 0.500 1 --> 2
+ node_21 --> H008 11 1 0.333 2 --> 1
+ node_22 --> H006 11 1 0.333 2 --> 1
+ node_23 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 9 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #9 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 23 0 0 0
+ 20 23 0 0 1
+ 19 20 2 2 2
+ 18 19 0 0 1
+ 17 18 3 3 3
+ 16 17 2 2 2
+H010 (2) 16 1 1 1
+H001 (7) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H013 (6) 17 0 0 0
+H012 (10) 18 1 1 1
+H011 (13) 18 0 0 0
+H007 (3) 19 1 0 1
+H009 (11) 20 1 0 1
+ 22 23 0 0 1
+ 21 22 1 1 1
+H008 (4) 21 1 0 1
+H014 (5) 21 1 1 2
+H006 (12) 22 1 0 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /--------------------- H010
+| |
+| +--------------------- H001
+| |
+| /--------16 /---------- H003
+| | +---------15
+| | | \---------- H005
+| /---------17 |
+| | | \--------------------- H000
+| | |
+| | \------------------------------- H013
+23 /--------18
+| | +------------------------------------------ H012
+| | |
+| /---------19 \------------------------------------------ H011
+| | |
++--------20 \---------------------------------------------------- H007
+| |
+| \--------------------------------------------------------------- H009
+|
+| /---------- H008
+| /---------21
+| | \---------- H014
+\--------------------------------------------------22
+ \--------------------- H006
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_20 --> node_19 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_18 --> node_17 8 1 1.000 1 ==> 2
+ 9 1 0.500 1 ==> 2
+ 10 1 0.500 1 ==> 2
+ node_17 --> node_16 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_18 --> H012 11 1 0.333 2 ==> 1
+ node_19 --> H007 12 1 0.333 2 --> 1
+ node_20 --> H009 12 1 0.333 2 --> 1
+ node_22 --> node_21 9 1 0.500 1 ==> 2
+ node_21 --> H008 11 1 0.333 2 --> 1
+ node_21 --> H014 10 1 0.500 1 ==> 2
+ node_22 --> H006 11 1 0.333 2 --> 1
+
+Tree number 10 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #10 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 21 0 0 0
+ 18 21 2 2 2
+ 17 18 3 3 3
+ 16 17 2 2 2
+H010 (2) 16 1 1 1
+H001 (7) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H013 (6) 17 0 0 0
+H007 (3) 18 1 1 1
+H012 (10) 18 1 1 1
+H011 (13) 18 0 0 0
+ 20 21 0 0 1
+ 19 20 1 1 1
+H008 (4) 19 1 0 1
+H006 (12) 19 0 0 1
+H014 (5) 20 2 1 2
+H009 (11) 21 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /----------------------------- H010
+| |
+| +----------------------------- H001
+| |
+| /-------------16 /--------------- H003
+| | +------------15
+| | | \--------------- H005
+| /------------17 |
+| | | \----------------------------- H000
+| | |
+| | \-------------------------------------------- H013
+21 |
++-------------18---------------------------------------------------------- H007
+| |
+| +---------------------------------------------------------- H012
+| |
+| \---------------------------------------------------------- H011
+|
+| /--------------- H008
+| /------------19
+| | \--------------- H006
++------------------------------------------20
+| \----------------------------- H014
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_18 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_18 --> node_17 8 1 1.000 1 ==> 2
+ 9 1 0.333 1 ==> 2
+ 10 1 0.500 1 ==> 2
+ node_17 --> node_16 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_18 --> H007 12 1 0.333 2 ==> 1
+ node_18 --> H012 11 1 0.500 2 ==> 1
+ node_20 --> node_19 11 1 0.500 2 ==> 1
+ node_19 --> H008 9 1 0.333 1 --> 2
+ node_20 --> H014 9 1 0.333 1 --> 2
+ 10 1 0.500 1 ==> 2
+ node_21 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 11 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #11 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 23 0 0 0
+ 22 23 0 0 1
+ 20 22 0 0 1
+ 19 20 2 2 2
+ 18 19 0 0 1
+ 17 18 3 3 3
+ 16 17 2 2 2
+H010 (2) 16 1 1 1
+H001 (7) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H013 (6) 17 0 0 0
+H007 (3) 18 1 1 1
+H011 (13) 18 0 0 0
+H012 (10) 19 1 0 1
+H006 (12) 20 1 0 1
+ 21 22 1 1 1
+H008 (4) 21 1 0 1
+H014 (5) 21 1 1 2
+H009 (11) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------ H010
+| |
+| +------------------ H001
+| |
+| /-------16 /--------- H003
+| | +-------15
+| | | \--------- H005
+| /--------17 |
+| | | \------------------ H000
+| | |
+| | \--------------------------- H013
+23 /-------18
+| | +------------------------------------- H007
+| | |
+| /-------19 \------------------------------------- H011
+| | |
+| /-------20 \---------------------------------------------- H012
+| | |
+| | \------------------------------------------------------- H006
++-------22
+| | /--------- H008
+| \-----------------------------------------------------21
+| \--------- H014
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_20 --> node_19 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_18 --> node_17 8 1 1.000 1 ==> 2
+ 9 1 0.500 1 ==> 2
+ 10 1 0.500 1 ==> 2
+ node_17 --> node_16 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_18 --> H007 12 1 0.333 2 ==> 1
+ node_19 --> H012 11 1 0.333 2 --> 1
+ node_20 --> H006 11 1 0.333 2 --> 1
+ node_22 --> node_21 9 1 0.500 1 ==> 2
+ node_21 --> H008 11 1 0.333 2 --> 1
+ node_21 --> H014 10 1 0.500 1 ==> 2
+ node_23 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 12 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #12 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 20 0 0 0
+ 18 20 2 2 2
+ 17 18 3 3 3
+ 16 17 2 2 2
+H010 (2) 16 1 1 1
+H001 (7) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H013 (6) 17 0 0 0
+H007 (3) 18 1 1 1
+H012 (10) 18 1 1 1
+H011 (13) 18 0 0 0
+ 19 20 1 1 1
+H008 (4) 19 1 1 1
+H006 (12) 19 0 0 0
+H014 (5) 20 2 2 2
+H009 (11) 20 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /----------------------------- H010
+| |
+| +----------------------------- H001
+| |
+| /-------------16 /--------------- H003
+| | +------------15
+| | | \--------------- H005
+| /------------17 |
+| | | \----------------------------- H000
+| | |
+| | \-------------------------------------------- H013
+20 |
++-------------18---------------------------------------------------------- H007
+| |
+| +---------------------------------------------------------- H012
+| |
+| \---------------------------------------------------------- H011
+|
+| /--------------- H008
++--------------------------------------------------------19
+| \--------------- H006
+|
++------------------------------------------------------------------------- H014
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_20 --> node_18 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_18 --> node_17 8 1 1.000 1 ==> 2
+ 9 1 0.333 1 ==> 2
+ 10 1 0.500 1 ==> 2
+ node_17 --> node_16 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_18 --> H007 12 1 0.333 2 ==> 1
+ node_18 --> H012 11 1 0.500 2 ==> 1
+ node_20 --> node_19 11 1 0.500 2 ==> 1
+ node_19 --> H008 9 1 0.333 1 ==> 2
+ node_20 --> H014 9 1 0.333 1 ==> 2
+ 10 1 0.500 1 ==> 2
+ node_20 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 13 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #13 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 22 0 0 0
+ 20 22 1 1 1
+ 19 20 1 1 1
+ 18 19 1 1 3
+ 17 18 2 2 2
+ 16 17 2 0 2
+H010 (2) 16 1 1 1
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H013 (6) 17 0 0 2
+H001 (7) 18 2 0 2
+H014 (5) 19 0 0 0
+H008 (4) 20 1 1 1
+ 21 22 2 2 2
+H007 (3) 21 1 1 1
+H012 (10) 21 1 1 1
+H011 (13) 21 0 0 0
+H009 (11) 22 1 1 1
+H006 (12) 22 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /--------------------- H010
+| |
+| | /---------- H003
+| /--------16---------15
+| | | \---------- H005
+| | |
+| /---------17 \--------------------- H000
+| | |
+| /--------18 \------------------------------- H013
+| | |
+| /---------19 \------------------------------------------ H001
+22 | |
++--------20 \---------------------------------------------------- H014
+| |
+| \--------------------------------------------------------------- H008
+|
+| /---------- H007
+| |
++-------------------------------------------------------------21---------- H012
+| |
+| \---------- H011
+|
++------------------------------------------------------------------------- H009
+|
+\------------------------------------------------------------------------- H006
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_20 9 1 1.000 1 ==> 2
+ node_20 --> node_19 10 1 1.000 1 ==> 2
+ node_19 --> node_18 8 1 1.000 1 ==> 2
+ node_18 --> node_17 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_17 --> node_16 6 1 0.500 1 --> 2
+ 7 1 0.500 1 --> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_18 --> H001 6 1 0.500 1 --> 2
+ 7 1 0.500 1 --> 2
+ node_20 --> H008 11 1 0.333 2 ==> 1
+ node_22 --> node_21 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_21 --> H007 12 1 0.333 2 ==> 1
+ node_21 --> H012 11 1 0.333 2 ==> 1
+ node_22 --> H009 12 1 0.333 2 ==> 1
+ node_22 --> H006 11 1 0.333 2 ==> 1
+
+Tree number 14 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #14 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 21 0 0 0
+ 19 21 1 1 1
+ 18 19 1 1 1
+ 17 18 3 3 3
+ 16 17 2 2 2
+H010 (2) 16 1 1 1
+H013 (6) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H001 (7) 17 0 0 0
+H014 (5) 18 0 0 0
+H008 (4) 19 1 1 1
+ 20 21 2 2 2
+H007 (3) 20 1 1 1
+H012 (10) 20 1 1 1
+H011 (13) 20 0 0 0
+H009 (11) 21 1 1 1
+H006 (12) 21 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------------ H010
+| |
+| +------------------------ H013
+| |
+| /----------16 /------------ H003
+| | +----------15
+| | | \------------ H005
+| /-----------17 |
+| | | \------------------------ H000
+| | |
+| /----------18 \------------------------------------ H001
+21 | |
++----------19 \------------------------------------------------- H014
+| |
+| \------------------------------------------------------------- H008
+|
+| /------------ H007
+| |
++-----------------------------------------------------------20------------ H012
+| |
+| \------------ H011
+|
++------------------------------------------------------------------------- H009
+|
+\------------------------------------------------------------------------- H006
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_19 9 1 1.000 1 ==> 2
+ node_19 --> node_18 10 1 1.000 1 ==> 2
+ node_18 --> node_17 6 1 0.500 1 ==> 2
+ 7 1 0.500 1 ==> 2
+ 8 1 1.000 1 ==> 2
+ node_17 --> node_16 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_19 --> H008 11 1 0.333 2 ==> 1
+ node_21 --> node_20 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_20 --> H007 12 1 0.333 2 ==> 1
+ node_20 --> H012 11 1 0.333 2 ==> 1
+ node_21 --> H009 12 1 0.333 2 ==> 1
+ node_21 --> H006 11 1 0.333 2 ==> 1
+
+Tree number 15 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #15 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 21 0 0 0
+ 19 21 1 1 1
+ 18 19 1 1 1
+ 17 18 3 3 3
+ 16 17 2 2 2
+H010 (2) 16 1 1 1
+H001 (7) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H013 (6) 17 0 0 0
+H014 (5) 18 0 0 0
+H008 (4) 19 1 1 1
+ 20 21 2 2 2
+H007 (3) 20 1 1 1
+H012 (10) 20 1 1 1
+H011 (13) 20 0 0 0
+H009 (11) 21 1 1 1
+H006 (12) 21 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------------ H010
+| |
+| +------------------------ H001
+| |
+| /----------16 /------------ H003
+| | +----------15
+| | | \------------ H005
+| /-----------17 |
+| | | \------------------------ H000
+| | |
+| /----------18 \------------------------------------ H013
+21 | |
++----------19 \------------------------------------------------- H014
+| |
+| \------------------------------------------------------------- H008
+|
+| /------------ H007
+| |
++-----------------------------------------------------------20------------ H012
+| |
+| \------------ H011
+|
++------------------------------------------------------------------------- H009
+|
+\------------------------------------------------------------------------- H006
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_19 9 1 1.000 1 ==> 2
+ node_19 --> node_18 10 1 1.000 1 ==> 2
+ node_18 --> node_17 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ 8 1 1.000 1 ==> 2
+ node_17 --> node_16 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_19 --> H008 11 1 0.333 2 ==> 1
+ node_21 --> node_20 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_20 --> H007 12 1 0.333 2 ==> 1
+ node_20 --> H012 11 1 0.333 2 ==> 1
+ node_21 --> H009 12 1 0.333 2 ==> 1
+ node_21 --> H006 11 1 0.333 2 ==> 1
+
+Tree number 16 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #16 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 22 0 0 0
+ 19 22 2 2 2
+ 18 19 1 1 3
+ 17 18 2 2 2
+ 16 17 2 0 2
+H010 (2) 16 1 1 1
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H001 (7) 17 0 0 2
+H013 (6) 18 2 0 2
+H014 (5) 19 0 0 0
+ 20 22 2 2 2
+H007 (3) 20 1 1 1
+H012 (10) 20 1 1 1
+H011 (13) 20 0 0 0
+ 21 22 1 1 1
+H008 (4) 21 1 1 1
+H006 (12) 21 0 0 0
+H009 (11) 22 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------------ H010
+| |
+| | /------------ H003
+| /----------16----------15
+| | | \------------ H005
+| | |
+| /-----------17 \------------------------ H000
+| | |
+| /----------18 \------------------------------------ H001
+| | |
++----------19 \------------------------------------------------- H013
+22 |
+| \------------------------------------------------------------- H014
+|
+| /------------ H007
+| |
++-----------------------------------------------------------20------------ H012
+| |
+| \------------ H011
+|
+| /------------ H008
++-----------------------------------------------------------21
+| \------------ H006
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_19 9 1 0.500 1 ==> 2
+ 10 1 1.000 1 ==> 2
+ node_19 --> node_18 8 1 1.000 1 ==> 2
+ node_18 --> node_17 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_17 --> node_16 1 1 0.333 1 --> 2
+ 2 1 0.333 1 --> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_18 --> H013 1 1 0.333 1 --> 2
+ 2 1 0.333 1 --> 2
+ node_22 --> node_20 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_20 --> H007 12 1 0.333 2 ==> 1
+ node_20 --> H012 11 1 0.500 2 ==> 1
+ node_22 --> node_21 11 1 0.500 2 ==> 1
+ node_21 --> H008 9 1 0.500 1 ==> 2
+ node_22 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 17 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #17 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 24 0 0 0
+ 20 24 1 1 1
+ 19 20 1 1 1
+ 18 19 1 1 3
+ 17 18 2 2 2
+ 16 17 2 0 2
+H010 (2) 16 1 1 1
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H001 (7) 17 0 0 2
+H013 (6) 18 2 0 2
+H014 (5) 19 0 0 0
+H008 (4) 20 1 1 1
+ 23 24 0 0 1
+ 22 23 2 2 2
+ 21 22 0 0 1
+H007 (3) 21 1 1 1
+H011 (13) 21 0 0 0
+H012 (10) 22 1 0 1
+H006 (12) 23 1 0 1
+H009 (11) 24 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /--------------------- H010
+| |
+| | /---------- H003
+| /--------16---------15
+| | | \---------- H005
+| | |
+| /---------17 \--------------------- H000
+| | |
+| /--------18 \------------------------------- H001
+| | |
+| /---------19 \------------------------------------------ H013
+24 | |
++--------20 \---------------------------------------------------- H014
+| |
+| \--------------------------------------------------------------- H008
+|
+| /---------- H007
+| /---------21
+| | \---------- H011
+| /--------22
+| | \--------------------- H012
++----------------------------------------23
+| \------------------------------- H006
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_24 --> node_20 9 1 1.000 1 ==> 2
+ node_20 --> node_19 10 1 1.000 1 ==> 2
+ node_19 --> node_18 8 1 1.000 1 ==> 2
+ node_18 --> node_17 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_17 --> node_16 1 1 0.333 1 --> 2
+ 2 1 0.333 1 --> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_18 --> H013 1 1 0.333 1 --> 2
+ 2 1 0.333 1 --> 2
+ node_20 --> H008 11 1 0.333 2 ==> 1
+ node_23 --> node_22 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_21 --> H007 12 1 0.333 2 ==> 1
+ node_22 --> H012 11 1 0.333 2 --> 1
+ node_23 --> H006 11 1 0.333 2 --> 1
+ node_24 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 18 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #18 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 22 0 0 0
+ 21 22 1 1 1
+ 20 21 0 0 1
+ 19 20 2 2 2
+ 17 19 2 1 2
+ 16 17 2 2 2
+H010 (2) 16 1 1 1
+H001 (7) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H013 (6) 17 0 0 0
+ 18 19 1 1 2
+H007 (3) 18 1 1 1
+H012 (10) 18 1 1 1
+H011 (13) 18 0 0 0
+H014 (5) 20 1 0 1
+H008 (4) 21 1 1 1
+H009 (11) 22 1 1 1
+H006 (12) 22 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /--------------------- H010
+| |
+| +--------------------- H001
+| |
+| /--------16 /---------- H003
+| | +---------15
+| | | \---------- H005
+| /---------17 |
+| | | \--------------------- H000
+| | |
+| | \------------------------------- H013
+22 /--------19
+| | | /---------- H007
+| | | |
+| | \------------------------------18---------- H012
+| /---------20 |
+| | | \---------- H011
+| | |
++--------21 \---------------------------------------------------- H014
+| |
+| \--------------------------------------------------------------- H008
+|
++------------------------------------------------------------------------- H009
+|
+\------------------------------------------------------------------------- H006
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_21 9 1 0.500 1 ==> 2
+ node_20 --> node_19 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_19 --> node_17 8 1 1.000 1 ==> 2
+ 10 1 0.500 1 --> 2
+ node_17 --> node_16 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_19 --> node_18 9 1 0.500 2 ==> 1
+ node_18 --> H007 12 1 0.333 2 ==> 1
+ node_18 --> H012 11 1 0.333 2 ==> 1
+ node_20 --> H014 10 1 0.500 1 --> 2
+ node_21 --> H008 11 1 0.333 2 ==> 1
+ node_22 --> H009 12 1 0.333 2 ==> 1
+ node_22 --> H006 11 1 0.333 2 ==> 1
+
+Tree number 19 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #19 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 24 0 0 0
+ 20 24 1 1 1
+ 19 20 1 1 1
+ 18 19 1 1 3
+ 17 18 2 2 2
+ 16 17 2 0 2
+H010 (2) 16 1 1 1
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H001 (7) 17 0 0 2
+H013 (6) 18 2 0 2
+H014 (5) 19 0 0 0
+H008 (4) 20 1 1 1
+ 23 24 0 0 1
+ 22 23 2 2 2
+H007 (3) 22 1 0 1
+ 21 22 0 0 1
+H012 (10) 21 1 1 1
+H011 (13) 21 0 0 0
+H009 (11) 23 1 0 1
+H006 (12) 24 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /--------------------- H010
+| |
+| | /---------- H003
+| /--------16---------15
+| | | \---------- H005
+| | |
+| /---------17 \--------------------- H000
+| | |
+| /--------18 \------------------------------- H001
+| | |
+| /---------19 \------------------------------------------ H013
+24 | |
++--------20 \---------------------------------------------------- H014
+| |
+| \--------------------------------------------------------------- H008
+|
+| /--------------------- H007
+| |
+| /--------22 /---------- H012
+| | \---------21
++----------------------------------------23 \---------- H011
+| |
+| \------------------------------- H009
+|
+\------------------------------------------------------------------------- H006
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_24 --> node_20 9 1 1.000 1 ==> 2
+ node_20 --> node_19 10 1 1.000 1 ==> 2
+ node_19 --> node_18 8 1 1.000 1 ==> 2
+ node_18 --> node_17 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_17 --> node_16 1 1 0.333 1 --> 2
+ 2 1 0.333 1 --> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_18 --> H013 1 1 0.333 1 --> 2
+ 2 1 0.333 1 --> 2
+ node_20 --> H008 11 1 0.333 2 ==> 1
+ node_23 --> node_22 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_22 --> H007 12 1 0.333 2 --> 1
+ node_21 --> H012 11 1 0.333 2 ==> 1
+ node_23 --> H009 12 1 0.333 2 --> 1
+ node_24 --> H006 11 1 0.333 2 ==> 1
+
+Tree number 20 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #20 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 24 0 0 0
+ 23 24 0 0 1
+ 20 23 1 1 1
+ 19 20 1 1 2
+ 18 19 1 1 3
+ 17 18 2 2 2
+ 16 17 2 0 2
+H010 (2) 16 1 1 1
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H001 (7) 17 0 0 2
+H013 (6) 18 2 0 2
+H014 (5) 19 0 0 0
+H008 (4) 20 1 0 1
+ 22 23 2 2 2
+ 21 22 0 0 1
+H007 (3) 21 1 1 1
+H011 (13) 21 0 0 0
+H012 (10) 22 1 0 1
+H006 (12) 23 1 0 1
+H009 (11) 24 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------ H010
+| |
+| | /--------- H003
+| /-------16-------15
+| | | \--------- H005
+| | |
+| /--------17 \------------------ H000
+| | |
+| /-------18 \--------------------------- H001
+| | |
+| /-------19 \------------------------------------- H013
+24 | |
+| /-------20 \---------------------------------------------- H014
+| | |
+| | \------------------------------------------------------- H008
+| |
+| | /--------- H007
++-------23 /-------21
+| | | \--------- H011
+| +--------------------------------------------22
+| | \------------------ H012
+| |
+| \---------------------------------------------------------------- H006
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_20 9 1 1.000 1 ==> 2
+ node_20 --> node_19 10 1 1.000 1 ==> 2
+ node_19 --> node_18 8 1 1.000 1 ==> 2
+ node_18 --> node_17 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_17 --> node_16 1 1 0.333 1 --> 2
+ 2 1 0.333 1 --> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_18 --> H013 1 1 0.333 1 --> 2
+ 2 1 0.333 1 --> 2
+ node_20 --> H008 11 1 0.333 2 --> 1
+ node_23 --> node_22 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_21 --> H007 12 1 0.333 2 ==> 1
+ node_22 --> H012 11 1 0.333 2 --> 1
+ node_23 --> H006 11 1 0.333 2 --> 1
+ node_24 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 21 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #21 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 23 0 0 0
+ 21 23 0 0 1
+ 20 21 1 1 1
+ 19 20 1 1 2
+ 18 19 1 1 3
+ 17 18 2 2 2
+ 16 17 2 0 2
+H010 (2) 16 1 1 1
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H001 (7) 17 0 0 2
+H013 (6) 18 2 0 2
+H014 (5) 19 0 0 0
+H008 (4) 20 1 0 1
+H006 (12) 21 1 0 1
+ 22 23 2 2 2
+H007 (3) 22 1 1 1
+H012 (10) 22 1 1 1
+H011 (13) 22 0 0 0
+H009 (11) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------ H010
+| |
+| | /--------- H003
+| /-------16-------15
+| | | \--------- H005
+| | |
+| /--------17 \------------------ H000
+| | |
+| /-------18 \--------------------------- H001
+| | |
+| /-------19 \------------------------------------- H013
+23 | |
+| /-------20 \---------------------------------------------- H014
+| | |
++-------21 \------------------------------------------------------- H008
+| |
+| \---------------------------------------------------------------- H006
+|
+| /--------- H007
+| |
++--------------------------------------------------------------22--------- H012
+| |
+| \--------- H011
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_20 9 1 1.000 1 ==> 2
+ node_20 --> node_19 10 1 1.000 1 ==> 2
+ node_19 --> node_18 8 1 1.000 1 ==> 2
+ node_18 --> node_17 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_17 --> node_16 1 1 0.333 1 --> 2
+ 2 1 0.333 1 --> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_18 --> H013 1 1 0.333 1 --> 2
+ 2 1 0.333 1 --> 2
+ node_20 --> H008 11 1 0.333 2 --> 1
+ node_21 --> H006 11 1 0.333 2 --> 1
+ node_23 --> node_22 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_22 --> H007 12 1 0.333 2 ==> 1
+ node_22 --> H012 11 1 0.333 2 ==> 1
+ node_23 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 22 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #22 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 23 0 0 0
+ 21 23 0 0 1
+ 19 21 2 1 2
+ 18 19 1 1 3
+ 17 18 2 2 2
+ 16 17 2 0 2
+H010 (2) 16 1 1 1
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H001 (7) 17 0 0 2
+H013 (6) 18 2 0 2
+H014 (5) 19 0 0 0
+ 20 21 1 1 1
+H008 (4) 20 1 0 1
+H006 (12) 20 0 0 1
+ 22 23 2 2 2
+H007 (3) 22 1 1 1
+H012 (10) 22 1 1 1
+H011 (13) 22 0 0 0
+H009 (11) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /--------------------- H010
+| |
+| | /---------- H003
+| /--------16---------15
+| | | \---------- H005
+| | |
+| /---------17 \--------------------- H000
+| | |
+| /--------18 \------------------------------- H001
+| | |
+| /---------19 \------------------------------------------ H013
+23 | |
+| | \---------------------------------------------------- H014
++--------21
+| | /---------- H008
+| \---------------------------------------------------20
+| \---------- H006
+|
+| /---------- H007
+| |
++-------------------------------------------------------------22---------- H012
+| |
+| \---------- H011
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_19 9 1 0.500 1 --> 2
+ 10 1 1.000 1 ==> 2
+ node_19 --> node_18 8 1 1.000 1 ==> 2
+ node_18 --> node_17 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_17 --> node_16 1 1 0.333 1 --> 2
+ 2 1 0.333 1 --> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_18 --> H013 1 1 0.333 1 --> 2
+ 2 1 0.333 1 --> 2
+ node_21 --> node_20 11 1 0.500 2 ==> 1
+ node_20 --> H008 9 1 0.500 1 --> 2
+ node_23 --> node_22 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_22 --> H007 12 1 0.333 2 ==> 1
+ node_22 --> H012 11 1 0.500 2 ==> 1
+ node_23 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 23 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #23 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 25 0 0 0
+ 24 25 0 0 1
+ 21 24 0 0 1
+ 20 21 1 1 1
+ 19 20 1 1 2
+ 18 19 1 1 3
+ 17 18 2 2 2
+ 16 17 2 0 2
+H010 (2) 16 1 1 1
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H001 (7) 17 0 0 2
+H013 (6) 18 2 0 2
+H014 (5) 19 0 0 0
+H008 (4) 20 1 0 1
+H006 (12) 21 1 0 1
+ 23 24 2 2 2
+ 22 23 0 0 1
+H007 (3) 22 1 1 1
+H011 (13) 22 0 0 0
+H012 (10) 23 1 0 1
+H009 (11) 25 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /---------------- H010
+| |
+| | /-------- H003
+| /------16------15
+| | | \-------- H005
+| | |
+| /------17 \---------------- H000
+| | |
+| /-------18 \------------------------ H001
+| | |
+| /------19 \-------------------------------- H013
+25 | |
+| /------20 \----------------------------------------- H014
+| | |
+| /------21 \------------------------------------------------- H008
+| | |
+| | \--------------------------------------------------------- H006
+| |
++------24 /-------- H007
+| | /------22
+| | | \-------- H011
+| \-----------------------------------------------23
+| \---------------- H012
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_20 9 1 1.000 1 ==> 2
+ node_20 --> node_19 10 1 1.000 1 ==> 2
+ node_19 --> node_18 8 1 1.000 1 ==> 2
+ node_18 --> node_17 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_17 --> node_16 1 1 0.333 1 --> 2
+ 2 1 0.333 1 --> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_18 --> H013 1 1 0.333 1 --> 2
+ 2 1 0.333 1 --> 2
+ node_20 --> H008 11 1 0.333 2 --> 1
+ node_21 --> H006 11 1 0.333 2 --> 1
+ node_24 --> node_23 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_22 --> H007 12 1 0.333 2 ==> 1
+ node_23 --> H012 11 1 0.333 2 --> 1
+ node_25 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 24 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #24 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 22 0 0 0
+ 20 22 0 0 1
+ 19 20 1 1 1
+ 18 19 1 1 2
+ 17 18 3 3 3
+ 16 17 2 2 2
+H010 (2) 16 1 1 1
+H001 (7) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H013 (6) 17 0 0 0
+H014 (5) 18 0 0 0
+H008 (4) 19 1 0 1
+H006 (12) 20 1 0 1
+ 21 22 2 2 2
+H007 (3) 21 1 1 1
+H012 (10) 21 1 1 1
+H011 (13) 21 0 0 0
+H009 (11) 22 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /--------------------- H010
+| |
+| +--------------------- H001
+| |
+| /--------16 /---------- H003
+| | +---------15
+| | | \---------- H005
+| /---------17 |
+| | | \--------------------- H000
+| | |
+| /--------18 \------------------------------- H013
+22 | |
+| /---------19 \------------------------------------------ H014
+| | |
++--------20 \---------------------------------------------------- H008
+| |
+| \--------------------------------------------------------------- H006
+|
+| /---------- H007
+| |
++-------------------------------------------------------------21---------- H012
+| |
+| \---------- H011
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_20 --> node_19 9 1 1.000 1 ==> 2
+ node_19 --> node_18 10 1 1.000 1 ==> 2
+ node_18 --> node_17 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ 8 1 1.000 1 ==> 2
+ node_17 --> node_16 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_19 --> H008 11 1 0.333 2 --> 1
+ node_20 --> H006 11 1 0.333 2 --> 1
+ node_22 --> node_21 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_21 --> H007 12 1 0.333 2 ==> 1
+ node_21 --> H012 11 1 0.333 2 ==> 1
+ node_22 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 25 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #25 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 23 0 0 0
+ 22 23 0 0 1
+ 19 22 2 2 2
+ 17 19 3 2 3
+ 16 17 2 2 2
+H010 (2) 16 1 1 1
+H001 (7) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H013 (6) 17 0 0 0
+ 18 19 0 0 1
+H007 (3) 18 1 1 1
+H012 (10) 18 1 1 1
+H011 (13) 18 0 0 0
+ 21 22 0 0 1
+ 20 21 1 1 1
+H008 (4) 20 1 0 1
+H006 (12) 20 0 0 1
+H014 (5) 21 2 1 2
+H009 (11) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------------ H010
+| |
+| +------------------------ H001
+| |
+| /----------16 /------------ H003
+| | +----------15
+| | | \------------ H005
+| /-----------17 |
+| | | \------------------------ H000
+| | |
+| | \------------------------------------ H013
+23 /----------19
+| | | /------------ H007
+| | | |
+| | \-----------------------------------18------------ H012
+| | |
++----------22 \------------ H011
+| |
+| | /------------ H008
+| | /----------20
+| | | \------------ H006
+| \-----------------------------------21
+| \------------------------ H014
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_19 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_19 --> node_17 8 1 1.000 1 ==> 2
+ 9 1 0.333 1 --> 2
+ 10 1 0.500 1 ==> 2
+ node_17 --> node_16 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_18 --> H007 12 1 0.333 2 ==> 1
+ node_18 --> H012 11 1 0.500 2 ==> 1
+ node_21 --> node_20 11 1 0.500 2 ==> 1
+ node_20 --> H008 9 1 0.333 1 --> 2
+ node_21 --> H014 9 1 0.333 1 --> 2
+ 10 1 0.500 1 ==> 2
+ node_23 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 26 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #26 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 22 0 0 0
+ 20 22 0 0 2
+ 19 20 2 2 2
+ 17 19 3 1 3
+ 16 17 2 2 2
+H010 (2) 16 1 1 1
+H001 (7) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H013 (6) 17 0 0 0
+ 18 19 0 0 2
+H007 (3) 18 1 1 1
+H012 (10) 18 1 1 1
+H011 (13) 18 0 0 0
+H014 (5) 20 2 0 2
+ 21 22 1 1 1
+H008 (4) 21 1 1 1
+H006 (12) 21 0 0 0
+H009 (11) 22 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------------ H010
+| |
+| +------------------------ H001
+| |
+| /----------16 /------------ H003
+| | +----------15
+| | | \------------ H005
+| /-----------17 |
+| | | \------------------------ H000
+| | |
+| | \------------------------------------ H013
+22 /----------19
+| | | /------------ H007
+| | | |
+| | \-----------------------------------18------------ H012
++----------20 |
+| | \------------ H011
+| |
+| \------------------------------------------------------------- H014
+|
+| /------------ H008
++-----------------------------------------------------------21
+| \------------ H006
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_20 --> node_19 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_19 --> node_17 8 1 1.000 1 ==> 2
+ 9 1 0.333 1 --> 2
+ 10 1 0.500 1 --> 2
+ node_17 --> node_16 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_18 --> H007 12 1 0.333 2 ==> 1
+ node_18 --> H012 11 1 0.500 2 ==> 1
+ node_20 --> H014 9 1 0.333 1 --> 2
+ 10 1 0.500 1 --> 2
+ node_22 --> node_21 11 1 0.500 2 ==> 1
+ node_21 --> H008 9 1 0.333 1 ==> 2
+ node_22 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 27 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #27 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 22 0 0 0
+ 20 22 0 0 2
+ 18 20 2 2 2
+ 17 18 3 1 3
+ 16 17 2 2 2
+H010 (2) 16 1 1 1
+H001 (7) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H013 (6) 17 0 0 0
+H014 (5) 18 0 0 2
+ 19 20 2 0 2
+H007 (3) 19 1 1 1
+H012 (10) 19 1 1 1
+H011 (13) 19 0 0 0
+ 21 22 1 1 1
+H008 (4) 21 1 1 1
+H006 (12) 21 0 0 0
+H009 (11) 22 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------------ H010
+| |
+| +------------------------ H001
+| |
+| /----------16 /------------ H003
+| | +----------15
+| | | \------------ H005
+| /-----------17 |
+| | | \------------------------ H000
+| | |
+| /----------18 \------------------------------------ H013
+22 | |
+| | \------------------------------------------------- H014
++----------20
+| | /------------ H007
+| | |
+| \-----------------------------------------------19------------ H012
+| |
+| \------------ H011
+|
+| /------------ H008
++-----------------------------------------------------------21
+| \------------ H006
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_20 --> node_18 9 1 0.500 1 ==> 2
+ 10 1 1.000 1 ==> 2
+ node_18 --> node_17 1 1 0.333 1 --> 2
+ 2 1 0.333 1 --> 2
+ 8 1 1.000 1 ==> 2
+ node_17 --> node_16 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_20 --> node_19 1 1 0.333 1 --> 2
+ 2 1 0.333 1 --> 2
+ node_19 --> H007 12 1 0.333 2 ==> 1
+ node_19 --> H012 11 1 0.500 2 ==> 1
+ node_22 --> node_21 11 1 0.500 2 ==> 1
+ node_21 --> H008 9 1 0.500 1 ==> 2
+ node_22 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 28 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #28 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 22 0 0 0
+ 20 22 0 0 1
+ 19 20 1 1 1
+ 18 19 1 1 2
+ 17 18 3 3 3
+ 16 17 2 2 2
+H010 (2) 16 1 1 1
+H013 (6) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H001 (7) 17 0 0 0
+H014 (5) 18 0 0 0
+H008 (4) 19 1 0 1
+H006 (12) 20 1 0 1
+ 21 22 2 2 2
+H007 (3) 21 1 1 1
+H012 (10) 21 1 1 1
+H011 (13) 21 0 0 0
+H009 (11) 22 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /--------------------- H010
+| |
+| +--------------------- H013
+| |
+| /--------16 /---------- H003
+| | +---------15
+| | | \---------- H005
+| /---------17 |
+| | | \--------------------- H000
+| | |
+| /--------18 \------------------------------- H001
+22 | |
+| /---------19 \------------------------------------------ H014
+| | |
++--------20 \---------------------------------------------------- H008
+| |
+| \--------------------------------------------------------------- H006
+|
+| /---------- H007
+| |
++-------------------------------------------------------------21---------- H012
+| |
+| \---------- H011
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_20 --> node_19 9 1 1.000 1 ==> 2
+ node_19 --> node_18 10 1 1.000 1 ==> 2
+ node_18 --> node_17 6 1 0.500 1 ==> 2
+ 7 1 0.500 1 ==> 2
+ 8 1 1.000 1 ==> 2
+ node_17 --> node_16 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_19 --> H008 11 1 0.333 2 --> 1
+ node_20 --> H006 11 1 0.333 2 --> 1
+ node_22 --> node_21 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_21 --> H007 12 1 0.333 2 ==> 1
+ node_21 --> H012 11 1 0.333 2 ==> 1
+ node_22 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 29 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #29 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 23 0 0 0
+ 22 23 0 0 1
+ 21 22 1 1 1
+ 20 21 0 0 1
+ 19 20 2 2 2
+ 18 19 1 1 1
+ 17 18 3 3 3
+ 16 17 2 2 2
+H010 (2) 16 1 1 1
+H001 (7) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H013 (6) 17 0 0 0
+H007 (3) 18 1 1 1
+H011 (13) 18 0 0 0
+H012 (10) 19 0 0 0
+H006 (12) 20 0 0 0
+H008 (4) 21 1 0 1
+H014 (5) 22 2 1 2
+H009 (11) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /---------------- H010
+| |
+| +---------------- H001
+| |
+| /------16 /-------- H003
+| | +------15
+| | | \-------- H005
+| /------17 |
+| | | \---------------- H000
+| | |
+| | \------------------------ H013
+23 /-------18
+| | +-------------------------------- H007
+| | |
+| /------19 \-------------------------------- H011
+| | |
+| /------20 \----------------------------------------- H012
+| | |
+| /------21 \------------------------------------------------- H006
+| | |
++------22 \--------------------------------------------------------- H008
+| |
+| \----------------------------------------------------------------- H014
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_21 11 1 0.500 2 ==> 1
+ node_20 --> node_19 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_19 --> node_18 11 1 0.500 1 ==> 2
+ node_18 --> node_17 8 1 1.000 1 ==> 2
+ 9 1 0.333 1 ==> 2
+ 10 1 0.500 1 ==> 2
+ node_17 --> node_16 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_18 --> H007 12 1 0.333 2 ==> 1
+ node_21 --> H008 9 1 0.333 1 --> 2
+ node_22 --> H014 9 1 0.333 1 --> 2
+ 10 1 0.500 1 ==> 2
+ node_23 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 30 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #30 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 22 0 0 0
+ 20 22 0 0 1
+ 19 20 2 2 2
+ 18 19 0 0 1
+ 17 18 3 3 3
+ 16 17 2 2 2
+H010 (2) 16 1 1 1
+H001 (7) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H013 (6) 17 0 0 0
+H007 (3) 18 1 1 1
+H011 (13) 18 0 0 0
+H012 (10) 19 1 0 1
+H006 (12) 20 1 0 1
+ 21 22 1 1 1
+H008 (4) 21 1 1 1
+H014 (5) 21 1 1 1
+H009 (11) 22 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /--------------------- H010
+| |
+| +--------------------- H001
+| |
+| /--------16 /---------- H003
+| | +---------15
+| | | \---------- H005
+| /---------17 |
+| | | \--------------------- H000
+| | |
+| | \------------------------------- H013
+22 /--------18
+| | +------------------------------------------ H007
+| | |
+| /---------19 \------------------------------------------ H011
+| | |
++--------20 \---------------------------------------------------- H012
+| |
+| \--------------------------------------------------------------- H006
+|
+| /---------- H008
++-------------------------------------------------------------21
+| \---------- H014
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_20 --> node_19 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_18 --> node_17 8 1 1.000 1 ==> 2
+ 9 1 0.500 1 ==> 2
+ 10 1 0.500 1 ==> 2
+ node_17 --> node_16 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_18 --> H007 12 1 0.333 2 ==> 1
+ node_19 --> H012 11 1 0.333 2 --> 1
+ node_20 --> H006 11 1 0.333 2 --> 1
+ node_22 --> node_21 9 1 0.500 1 ==> 2
+ node_21 --> H008 11 1 0.333 2 ==> 1
+ node_21 --> H014 10 1 0.500 1 ==> 2
+ node_22 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 31 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #31 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 22 0 0 0
+ 21 22 0 0 1
+ 19 21 2 2 2
+ 18 19 0 0 1
+ 17 18 3 3 3
+ 16 17 2 2 2
+H010 (2) 16 1 1 1
+H001 (7) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H013 (6) 17 0 0 0
+H007 (3) 18 1 1 1
+H011 (13) 18 0 0 0
+H012 (10) 19 1 0 1
+ 20 21 1 0 1
+H008 (4) 20 1 1 1
+H006 (12) 20 0 0 0
+H014 (5) 22 2 2 2
+H009 (11) 22 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /--------------------- H010
+| |
+| +--------------------- H001
+| |
+| /--------16 /---------- H003
+| | +---------15
+| | | \---------- H005
+| /---------17 |
+| | | \--------------------- H000
+| | |
+| | \------------------------------- H013
+22 /--------18
+| | +------------------------------------------ H007
+| | |
+| /---------19 \------------------------------------------ H011
+| | |
+| | \---------------------------------------------------- H012
++--------21
+| | /---------- H008
+| \---------------------------------------------------20
+| \---------- H006
+|
++------------------------------------------------------------------------- H014
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_19 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_18 --> node_17 8 1 1.000 1 ==> 2
+ 9 1 0.333 1 ==> 2
+ 10 1 0.500 1 ==> 2
+ node_17 --> node_16 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_18 --> H007 12 1 0.333 2 ==> 1
+ node_19 --> H012 11 1 0.500 2 --> 1
+ node_21 --> node_20 11 1 0.500 2 --> 1
+ node_20 --> H008 9 1 0.333 1 ==> 2
+ node_22 --> H014 9 1 0.333 1 ==> 2
+ 10 1 0.500 1 ==> 2
+ node_22 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 32 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #32 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 23 0 0 0
+ 22 23 0 0 1
+ 20 22 2 2 2
+ 19 20 0 0 1
+ 18 19 2 2 2
+ 17 18 1 1 1
+ 16 17 2 2 2
+H010 (2) 16 1 1 1
+H001 (7) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H013 (6) 17 0 0 0
+H014 (5) 18 2 2 2
+H007 (3) 19 1 1 1
+H011 (13) 19 0 0 0
+H012 (10) 20 1 0 1
+ 21 22 1 0 1
+H008 (4) 21 1 1 1
+H006 (12) 21 0 0 0
+H009 (11) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------ H010
+| |
+| +------------------ H001
+| |
+| /-------16 /--------- H003
+| | +-------15
+| | | \--------- H005
+| /--------17 |
+| | | \------------------ H000
+| | |
+| /-------18 \--------------------------- H013
+23 | |
+| | \------------------------------------- H014
+| /-------19
+| | +---------------------------------------------- H007
+| | |
+| /-------20 \---------------------------------------------- H011
+| | |
+| | \------------------------------------------------------- H012
++-------22
+| | /--------- H008
+| \-----------------------------------------------------21
+| \--------- H006
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_20 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_19 --> node_18 9 1 0.500 1 ==> 2
+ 10 1 1.000 1 ==> 2
+ node_18 --> node_17 8 1 1.000 1 ==> 2
+ node_17 --> node_16 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_18 --> H014 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_19 --> H007 12 1 0.333 2 ==> 1
+ node_20 --> H012 11 1 0.500 2 --> 1
+ node_22 --> node_21 11 1 0.500 2 --> 1
+ node_21 --> H008 9 1 0.500 1 ==> 2
+ node_23 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 33 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #33 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 24 0 0 0
+ 23 24 0 0 1
+ 20 23 0 0 1
+ 19 20 1 1 1
+ 18 19 1 1 2
+ 17 18 3 3 3
+ 16 17 2 2 2
+H010 (2) 16 1 1 1
+H001 (7) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H013 (6) 17 0 0 0
+H014 (5) 18 0 0 0
+H008 (4) 19 1 0 1
+H006 (12) 20 1 0 1
+ 22 23 2 2 2
+ 21 22 0 0 1
+H007 (3) 21 1 1 1
+H011 (13) 21 0 0 0
+H012 (10) 22 1 0 1
+H009 (11) 24 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------ H010
+| |
+| +------------------ H001
+| |
+| /-------16 /--------- H003
+| | +-------15
+| | | \--------- H005
+| /--------17 |
+| | | \------------------ H000
+| | |
+| /-------18 \--------------------------- H013
+24 | |
+| /-------19 \------------------------------------- H014
+| | |
+| /-------20 \---------------------------------------------- H008
+| | |
+| | \------------------------------------------------------- H006
+| |
++-------23 /--------- H007
+| | /-------21
+| | | \--------- H011
+| \--------------------------------------------22
+| \------------------ H012
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_20 --> node_19 9 1 1.000 1 ==> 2
+ node_19 --> node_18 10 1 1.000 1 ==> 2
+ node_18 --> node_17 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ 8 1 1.000 1 ==> 2
+ node_17 --> node_16 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_19 --> H008 11 1 0.333 2 --> 1
+ node_20 --> H006 11 1 0.333 2 --> 1
+ node_23 --> node_22 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_21 --> H007 12 1 0.333 2 ==> 1
+ node_22 --> H012 11 1 0.333 2 --> 1
+ node_24 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 34 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #34 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 24 0 0 0
+ 23 24 0 0 1
+ 20 23 0 0 1
+ 19 20 1 1 1
+ 18 19 1 1 2
+ 17 18 3 3 3
+ 16 17 2 2 2
+H010 (2) 16 1 1 1
+H013 (6) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H001 (7) 17 0 0 0
+H014 (5) 18 0 0 0
+H008 (4) 19 1 0 1
+H006 (12) 20 1 0 1
+ 22 23 2 2 2
+ 21 22 0 0 1
+H007 (3) 21 1 1 1
+H011 (13) 21 0 0 0
+H012 (10) 22 1 0 1
+H009 (11) 24 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------ H010
+| |
+| +------------------ H013
+| |
+| /-------16 /--------- H003
+| | +-------15
+| | | \--------- H005
+| /--------17 |
+| | | \------------------ H000
+| | |
+| /-------18 \--------------------------- H001
+24 | |
+| /-------19 \------------------------------------- H014
+| | |
+| /-------20 \---------------------------------------------- H008
+| | |
+| | \------------------------------------------------------- H006
+| |
++-------23 /--------- H007
+| | /-------21
+| | | \--------- H011
+| \--------------------------------------------22
+| \------------------ H012
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_20 --> node_19 9 1 1.000 1 ==> 2
+ node_19 --> node_18 10 1 1.000 1 ==> 2
+ node_18 --> node_17 6 1 0.500 1 ==> 2
+ 7 1 0.500 1 ==> 2
+ 8 1 1.000 1 ==> 2
+ node_17 --> node_16 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_19 --> H008 11 1 0.333 2 --> 1
+ node_20 --> H006 11 1 0.333 2 --> 1
+ node_23 --> node_22 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_21 --> H007 12 1 0.333 2 ==> 1
+ node_22 --> H012 11 1 0.333 2 --> 1
+ node_24 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 35 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #35 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 22 0 0 0
+ 20 22 0 0 1
+ 19 20 2 2 2
+ 18 19 0 0 1
+ 17 18 3 3 3
+ 16 17 2 2 2
+H010 (2) 16 1 1 1
+H001 (7) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H013 (6) 17 0 0 0
+H012 (10) 18 1 1 1
+H011 (13) 18 0 0 0
+H007 (3) 19 1 0 1
+H009 (11) 20 1 0 1
+ 21 22 1 1 1
+H008 (4) 21 1 1 1
+H014 (5) 21 1 1 1
+H006 (12) 22 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /--------------------- H010
+| |
+| +--------------------- H001
+| |
+| /--------16 /---------- H003
+| | +---------15
+| | | \---------- H005
+| /---------17 |
+| | | \--------------------- H000
+| | |
+| | \------------------------------- H013
+22 /--------18
+| | +------------------------------------------ H012
+| | |
+| /---------19 \------------------------------------------ H011
+| | |
++--------20 \---------------------------------------------------- H007
+| |
+| \--------------------------------------------------------------- H009
+|
+| /---------- H008
++-------------------------------------------------------------21
+| \---------- H014
+|
+\------------------------------------------------------------------------- H006
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_20 --> node_19 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_18 --> node_17 8 1 1.000 1 ==> 2
+ 9 1 0.500 1 ==> 2
+ 10 1 0.500 1 ==> 2
+ node_17 --> node_16 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_18 --> H012 11 1 0.333 2 ==> 1
+ node_19 --> H007 12 1 0.333 2 --> 1
+ node_20 --> H009 12 1 0.333 2 --> 1
+ node_22 --> node_21 9 1 0.500 1 ==> 2
+ node_21 --> H008 11 1 0.333 2 ==> 1
+ node_21 --> H014 10 1 0.500 1 ==> 2
+ node_22 --> H006 11 1 0.333 2 ==> 1
+
+Tree number 36 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #36 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 22 0 0 0
+ 21 22 0 0 1
+ 19 21 2 2 2
+ 17 19 3 2 3
+ 16 17 2 2 2
+H010 (2) 16 1 1 1
+H001 (7) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H013 (6) 17 0 0 0
+ 18 19 0 0 1
+H007 (3) 18 1 1 1
+H012 (10) 18 1 1 1
+H011 (13) 18 0 0 0
+ 20 21 1 1 1
+H008 (4) 20 1 0 1
+H006 (12) 20 0 0 1
+H014 (5) 21 2 1 2
+H009 (11) 22 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------------ H010
+| |
+| +------------------------ H001
+| |
+| /----------16 /------------ H003
+| | +----------15
+| | | \------------ H005
+| /-----------17 |
+| | | \------------------------ H000
+| | |
+| | \------------------------------------ H013
+22 /----------19
+| | | /------------ H007
+| | | |
+| | \-----------------------------------18------------ H012
+| | |
+| | \------------ H011
++----------21
+| | /------------ H008
+| +-----------------------------------------------20
+| | \------------ H006
+| |
+| \------------------------------------------------------------- H014
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_19 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_19 --> node_17 8 1 1.000 1 ==> 2
+ 9 1 0.333 1 --> 2
+ 10 1 0.500 1 ==> 2
+ node_17 --> node_16 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_18 --> H007 12 1 0.333 2 ==> 1
+ node_18 --> H012 11 1 0.500 2 ==> 1
+ node_21 --> node_20 11 1 0.500 2 ==> 1
+ node_20 --> H008 9 1 0.333 1 --> 2
+ node_21 --> H014 9 1 0.333 1 --> 2
+ 10 1 0.500 1 ==> 2
+ node_22 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 37 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #37 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 21 0 0 0
+ 19 21 2 2 2
+ 18 19 2 2 2
+ 17 18 1 1 1
+ 16 17 2 2 2
+H010 (2) 16 1 1 1
+H001 (7) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H013 (6) 17 0 0 0
+H014 (5) 18 2 2 2
+H007 (3) 19 1 1 1
+H012 (10) 19 1 1 1
+H011 (13) 19 0 0 0
+ 20 21 1 1 1
+H008 (4) 20 1 1 1
+H006 (12) 20 0 0 0
+H009 (11) 21 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------------ H010
+| |
+| +------------------------ H001
+| |
+| /----------16 /------------ H003
+| | +----------15
+| | | \------------ H005
+| /-----------17 |
+| | | \------------------------ H000
+| | |
+| /----------18 \------------------------------------ H013
+21 | |
+| | \------------------------------------------------- H014
+| |
++----------19------------------------------------------------------------- H007
+| |
+| +------------------------------------------------------------- H012
+| |
+| \------------------------------------------------------------- H011
+|
+| /------------ H008
++-----------------------------------------------------------20
+| \------------ H006
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_19 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_19 --> node_18 9 1 0.500 1 ==> 2
+ 10 1 1.000 1 ==> 2
+ node_18 --> node_17 8 1 1.000 1 ==> 2
+ node_17 --> node_16 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_18 --> H014 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_19 --> H007 12 1 0.333 2 ==> 1
+ node_19 --> H012 11 1 0.500 2 ==> 1
+ node_21 --> node_20 11 1 0.500 2 ==> 1
+ node_20 --> H008 9 1 0.500 1 ==> 2
+ node_21 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 38 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #38 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 22 0 0 0
+ 21 22 1 1 1
+ 20 21 2 2 2
+ 19 20 1 1 1
+ 18 19 2 2 2
+ 17 18 1 1 1
+ 16 17 2 2 2
+H010 (2) 16 1 1 1
+H001 (7) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H013 (6) 17 0 0 0
+H014 (5) 18 2 2 2
+H007 (3) 19 1 1 1
+H011 (13) 19 0 0 0
+H012 (10) 20 0 0 0
+H008 (4) 21 1 1 1
+H006 (12) 21 0 0 0
+H009 (11) 22 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------ H010
+| |
+| +------------------ H001
+| |
+| /-------16 /--------- H003
+| | +-------15
+| | | \--------- H005
+| /--------17 |
+| | | \------------------ H000
+| | |
+| /-------18 \--------------------------- H013
+22 | |
+| | \------------------------------------- H014
+| /-------19
+| | +---------------------------------------------- H007
+| | |
+| /-------20 \---------------------------------------------- H011
+| | |
+| | \------------------------------------------------------- H012
++-------21
+| +---------------------------------------------------------------- H008
+| |
+| \---------------------------------------------------------------- H006
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_21 11 1 0.500 2 ==> 1
+ node_21 --> node_20 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_20 --> node_19 11 1 0.500 1 ==> 2
+ node_19 --> node_18 9 1 0.500 1 ==> 2
+ 10 1 1.000 1 ==> 2
+ node_18 --> node_17 8 1 1.000 1 ==> 2
+ node_17 --> node_16 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_18 --> H014 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_19 --> H007 12 1 0.333 2 ==> 1
+ node_21 --> H008 9 1 0.500 1 ==> 2
+ node_22 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 39 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #39 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 23 0 0 0
+ 21 23 0 0 1
+ 20 21 2 2 2
+ 19 20 0 0 1
+ 18 19 2 2 2
+ 17 18 1 1 1
+ 16 17 2 2 2
+H010 (2) 16 1 1 1
+H001 (7) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H013 (6) 17 0 0 0
+H014 (5) 18 2 2 2
+H012 (10) 19 1 1 1
+H011 (13) 19 0 0 0
+H007 (3) 20 1 0 1
+H009 (11) 21 1 0 1
+ 22 23 1 1 1
+H008 (4) 22 1 1 1
+H006 (12) 22 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------ H010
+| |
+| +------------------ H001
+| |
+| /-------16 /--------- H003
+| | +-------15
+| | | \--------- H005
+| /--------17 |
+| | | \------------------ H000
+| | |
+| /-------18 \--------------------------- H013
+23 | |
+| | \------------------------------------- H014
+| /-------19
+| | +---------------------------------------------- H012
+| | |
+| /-------20 \---------------------------------------------- H011
+| | |
++-------21 \------------------------------------------------------- H007
+| |
+| \---------------------------------------------------------------- H009
+|
+| /--------- H008
+\--------------------------------------------------------------22
+ \--------- H006
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_20 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_19 --> node_18 9 1 0.500 1 ==> 2
+ 10 1 1.000 1 ==> 2
+ node_18 --> node_17 8 1 1.000 1 ==> 2
+ node_17 --> node_16 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_18 --> H014 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_19 --> H012 11 1 0.500 2 ==> 1
+ node_20 --> H007 12 1 0.333 2 --> 1
+ node_21 --> H009 12 1 0.333 2 --> 1
+ node_23 --> node_22 11 1 0.500 2 ==> 1
+ node_22 --> H008 9 1 0.500 1 ==> 2
+
+Tree number 40 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #40 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 23 0 0 0
+ 22 23 0 0 1
+ 19 22 1 1 1
+ 18 19 1 1 2
+ 17 18 3 3 3
+ 16 17 2 2 2
+H010 (2) 16 1 1 1
+H001 (7) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H013 (6) 17 0 0 0
+H014 (5) 18 0 0 0
+H008 (4) 19 1 0 1
+ 21 22 2 2 2
+ 20 21 0 0 1
+H007 (3) 20 1 1 1
+H011 (13) 20 0 0 0
+H012 (10) 21 1 0 1
+H006 (12) 22 1 0 1
+H009 (11) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /--------------------- H010
+| |
+| +--------------------- H001
+| |
+| /--------16 /---------- H003
+| | +---------15
+| | | \---------- H005
+| /---------17 |
+| | | \--------------------- H000
+| | |
+| /--------18 \------------------------------- H013
+23 | |
+| /---------19 \------------------------------------------ H014
+| | |
+| | \---------------------------------------------------- H008
+| |
+| | /---------- H007
++--------22 /---------20
+| | | \---------- H011
+| +----------------------------------------21
+| | \--------------------- H012
+| |
+| \--------------------------------------------------------------- H006
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_19 9 1 1.000 1 ==> 2
+ node_19 --> node_18 10 1 1.000 1 ==> 2
+ node_18 --> node_17 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ 8 1 1.000 1 ==> 2
+ node_17 --> node_16 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_19 --> H008 11 1 0.333 2 --> 1
+ node_22 --> node_21 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_20 --> H007 12 1 0.333 2 ==> 1
+ node_21 --> H012 11 1 0.333 2 --> 1
+ node_22 --> H006 11 1 0.333 2 --> 1
+ node_23 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 41 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #41 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 24 0 0 0
+ 20 24 0 0 1
+ 19 20 1 1 1
+ 18 19 1 1 2
+ 17 18 3 3 3
+ 16 17 2 2 2
+H010 (2) 16 1 1 1
+H001 (7) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H013 (6) 17 0 0 0
+H014 (5) 18 0 0 0
+H008 (4) 19 1 0 1
+H006 (12) 20 1 0 1
+ 23 24 0 0 1
+ 22 23 2 2 2
+H007 (3) 22 1 0 1
+ 21 22 0 0 1
+H012 (10) 21 1 1 1
+H011 (13) 21 0 0 0
+H009 (11) 23 1 0 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /--------------------- H010
+| |
+| +--------------------- H001
+| |
+| /--------16 /---------- H003
+| | +---------15
+| | | \---------- H005
+| /---------17 |
+| | | \--------------------- H000
+| | |
+24 /--------18 \------------------------------- H013
+| | |
+| /---------19 \------------------------------------------ H014
+| | |
++--------20 \---------------------------------------------------- H008
+| |
+| \--------------------------------------------------------------- H006
+|
+| /--------------------- H007
+| |
+| /--------22 /---------- H012
+| | \---------21
+\----------------------------------------23 \---------- H011
+ |
+ \------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_20 --> node_19 9 1 1.000 1 ==> 2
+ node_19 --> node_18 10 1 1.000 1 ==> 2
+ node_18 --> node_17 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ 8 1 1.000 1 ==> 2
+ node_17 --> node_16 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_19 --> H008 11 1 0.333 2 --> 1
+ node_20 --> H006 11 1 0.333 2 --> 1
+ node_23 --> node_22 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_22 --> H007 12 1 0.333 2 --> 1
+ node_21 --> H012 11 1 0.333 2 ==> 1
+ node_23 --> H009 12 1 0.333 2 --> 1
+
+Tree number 42 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #42 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 24 0 0 0
+ 23 24 0 0 1
+ 19 23 1 1 1
+ 18 19 1 1 2
+ 17 18 3 3 3
+ 16 17 2 2 2
+H010 (2) 16 1 1 1
+H001 (7) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H013 (6) 17 0 0 0
+H014 (5) 18 0 0 0
+H008 (4) 19 1 0 1
+ 22 23 0 0 1
+ 21 22 2 2 2
+ 20 21 0 0 1
+H007 (3) 20 1 1 1
+H011 (13) 20 0 0 0
+H012 (10) 21 1 0 1
+H006 (12) 22 1 0 1
+H009 (11) 24 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /--------------------- H010
+| |
+| +--------------------- H001
+| |
+| /--------16 /---------- H003
+| | +---------15
+| | | \---------- H005
+| /---------17 |
+| | | \--------------------- H000
+| | |
+| /--------18 \------------------------------- H013
+24 | |
+| /---------19 \------------------------------------------ H014
+| | |
+| | \---------------------------------------------------- H008
+| |
+| | /---------- H007
++--------23 /---------20
+| | | \---------- H011
+| | /--------21
+| | | \--------------------- H012
+| \------------------------------22
+| \------------------------------- H006
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_19 9 1 1.000 1 ==> 2
+ node_19 --> node_18 10 1 1.000 1 ==> 2
+ node_18 --> node_17 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ 8 1 1.000 1 ==> 2
+ node_17 --> node_16 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_19 --> H008 11 1 0.333 2 --> 1
+ node_22 --> node_21 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_20 --> H007 12 1 0.333 2 ==> 1
+ node_21 --> H012 11 1 0.333 2 --> 1
+ node_22 --> H006 11 1 0.333 2 --> 1
+ node_24 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 43 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #43 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 23 0 0 0
+ 22 23 0 0 1
+ 20 22 0 0 2
+ 19 20 2 2 2
+ 17 19 3 1 3
+ 16 17 2 2 2
+H010 (2) 16 1 1 1
+H001 (7) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H013 (6) 17 0 0 0
+ 18 19 0 0 2
+H007 (3) 18 1 1 1
+H012 (10) 18 1 1 1
+H011 (13) 18 0 0 0
+H014 (5) 20 2 0 2
+ 21 22 1 1 1
+H008 (4) 21 1 0 1
+H006 (12) 21 0 0 1
+H009 (11) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /--------------------- H010
+| |
+| +--------------------- H001
+| |
+| /--------16 /---------- H003
+| | +---------15
+| | | \---------- H005
+| /---------17 |
+| | | \--------------------- H000
+| | |
+| | \------------------------------- H013
+23 /--------19
+| | | /---------- H007
+| | | |
+| | \------------------------------18---------- H012
+| /---------20 |
+| | | \---------- H011
+| | |
++--------22 \---------------------------------------------------- H014
+| |
+| | /---------- H008
+| \---------------------------------------------------21
+| \---------- H006
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_20 --> node_19 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_19 --> node_17 8 1 1.000 1 ==> 2
+ 9 1 0.333 1 --> 2
+ 10 1 0.500 1 --> 2
+ node_17 --> node_16 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_18 --> H007 12 1 0.333 2 ==> 1
+ node_18 --> H012 11 1 0.500 2 ==> 1
+ node_20 --> H014 9 1 0.333 1 --> 2
+ 10 1 0.500 1 --> 2
+ node_22 --> node_21 11 1 0.500 2 ==> 1
+ node_21 --> H008 9 1 0.333 1 --> 2
+ node_23 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 44 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #44 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 22 0 0 0
+ 20 22 0 0 1
+ 19 20 2 2 2
+ 18 19 0 0 1
+ 17 18 3 3 3
+ 16 17 2 2 2
+H010 (2) 16 1 1 1
+H001 (7) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H013 (6) 17 0 0 0
+H012 (10) 18 1 1 1
+H011 (13) 18 0 0 0
+H007 (3) 19 1 0 1
+H009 (11) 20 1 0 1
+ 21 22 1 1 1
+H008 (4) 21 1 1 1
+H006 (12) 21 0 0 0
+H014 (5) 22 2 2 2
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /--------------------- H010
+| |
+| +--------------------- H001
+| |
+| /--------16 /---------- H003
+| | +---------15
+| | | \---------- H005
+| /---------17 |
+| | | \--------------------- H000
+| | |
+| | \------------------------------- H013
+22 /--------18
+| | +------------------------------------------ H012
+| | |
+| /---------19 \------------------------------------------ H011
+| | |
++--------20 \---------------------------------------------------- H007
+| |
+| \--------------------------------------------------------------- H009
+|
+| /---------- H008
++-------------------------------------------------------------21
+| \---------- H006
+|
+\------------------------------------------------------------------------- H014
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_20 --> node_19 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_18 --> node_17 8 1 1.000 1 ==> 2
+ 9 1 0.333 1 ==> 2
+ 10 1 0.500 1 ==> 2
+ node_17 --> node_16 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_18 --> H012 11 1 0.500 2 ==> 1
+ node_19 --> H007 12 1 0.333 2 --> 1
+ node_20 --> H009 12 1 0.333 2 --> 1
+ node_22 --> node_21 11 1 0.500 2 ==> 1
+ node_21 --> H008 9 1 0.333 1 ==> 2
+ node_22 --> H014 9 1 0.333 1 ==> 2
+ 10 1 0.500 1 ==> 2
+
+Tree number 45 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #45 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 23 0 0 0
+ 20 23 0 0 1
+ 19 20 2 2 2
+ 18 19 0 0 1
+ 17 18 3 3 3
+ 16 17 2 2 2
+H010 (2) 16 1 1 1
+H001 (7) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H013 (6) 17 0 0 0
+H012 (10) 18 1 1 1
+H011 (13) 18 0 0 0
+H007 (3) 19 1 0 1
+H009 (11) 20 1 0 1
+ 22 23 0 0 1
+ 21 22 1 1 1
+H008 (4) 21 1 0 1
+H006 (12) 21 0 0 1
+H014 (5) 22 2 1 2
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /--------------------- H010
+| |
+| +--------------------- H001
+| |
+| /--------16 /---------- H003
+| | +---------15
+| | | \---------- H005
+| /---------17 |
+| | | \--------------------- H000
+| | |
+| | \------------------------------- H013
+23 /--------18
+| | +------------------------------------------ H012
+| | |
+| /---------19 \------------------------------------------ H011
+| | |
++--------20 \---------------------------------------------------- H007
+| |
+| \--------------------------------------------------------------- H009
+|
+| /---------- H008
+| /---------21
+| | \---------- H006
+\--------------------------------------------------22
+ \--------------------- H014
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_20 --> node_19 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_18 --> node_17 8 1 1.000 1 ==> 2
+ 9 1 0.333 1 ==> 2
+ 10 1 0.500 1 ==> 2
+ node_17 --> node_16 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_18 --> H012 11 1 0.500 2 ==> 1
+ node_19 --> H007 12 1 0.333 2 --> 1
+ node_20 --> H009 12 1 0.333 2 --> 1
+ node_22 --> node_21 11 1 0.500 2 ==> 1
+ node_21 --> H008 9 1 0.333 1 --> 2
+ node_22 --> H014 9 1 0.333 1 --> 2
+ 10 1 0.500 1 ==> 2
+
+Tree number 46 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #46 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 24 0 0 0
+ 20 24 0 0 1
+ 19 20 1 1 1
+ 18 19 1 1 2
+ 17 18 3 3 3
+ 16 17 2 2 2
+H010 (2) 16 1 1 1
+H013 (6) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H001 (7) 17 0 0 0
+H014 (5) 18 0 0 0
+H008 (4) 19 1 0 1
+H006 (12) 20 1 0 1
+ 23 24 0 0 1
+ 22 23 2 2 2
+H007 (3) 22 1 0 1
+ 21 22 0 0 1
+H012 (10) 21 1 1 1
+H011 (13) 21 0 0 0
+H009 (11) 23 1 0 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /--------------------- H010
+| |
+| +--------------------- H013
+| |
+| /--------16 /---------- H003
+| | +---------15
+| | | \---------- H005
+| /---------17 |
+| | | \--------------------- H000
+| | |
+24 /--------18 \------------------------------- H001
+| | |
+| /---------19 \------------------------------------------ H014
+| | |
++--------20 \---------------------------------------------------- H008
+| |
+| \--------------------------------------------------------------- H006
+|
+| /--------------------- H007
+| |
+| /--------22 /---------- H012
+| | \---------21
+\----------------------------------------23 \---------- H011
+ |
+ \------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_20 --> node_19 9 1 1.000 1 ==> 2
+ node_19 --> node_18 10 1 1.000 1 ==> 2
+ node_18 --> node_17 6 1 0.500 1 ==> 2
+ 7 1 0.500 1 ==> 2
+ 8 1 1.000 1 ==> 2
+ node_17 --> node_16 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_19 --> H008 11 1 0.333 2 --> 1
+ node_20 --> H006 11 1 0.333 2 --> 1
+ node_23 --> node_22 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_22 --> H007 12 1 0.333 2 --> 1
+ node_21 --> H012 11 1 0.333 2 ==> 1
+ node_23 --> H009 12 1 0.333 2 --> 1
+
+Tree number 47 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #47 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 21 0 0 0
+ 20 21 1 1 1
+ 19 20 2 2 2
+ 18 19 1 1 1
+ 17 18 3 3 3
+ 16 17 2 2 2
+H010 (2) 16 1 1 1
+H001 (7) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H013 (6) 17 0 0 0
+H007 (3) 18 1 1 1
+H011 (13) 18 0 0 0
+H012 (10) 19 0 0 0
+H008 (4) 20 1 1 1
+H006 (12) 20 0 0 0
+H014 (5) 21 2 2 2
+H009 (11) 21 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /--------------------- H010
+| |
+| +--------------------- H001
+| |
+| /--------16 /---------- H003
+| | +---------15
+| | | \---------- H005
+| /---------17 |
+| | | \--------------------- H000
+| | |
+| | \------------------------------- H013
+21 /--------18
+| | +------------------------------------------ H007
+| | |
+| /---------19 \------------------------------------------ H011
+| | |
+| | \---------------------------------------------------- H012
++--------20
+| +--------------------------------------------------------------- H008
+| |
+| \--------------------------------------------------------------- H006
+|
++------------------------------------------------------------------------- H014
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_20 11 1 0.500 2 ==> 1
+ node_20 --> node_19 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_19 --> node_18 11 1 0.500 1 ==> 2
+ node_18 --> node_17 8 1 1.000 1 ==> 2
+ 9 1 0.333 1 ==> 2
+ 10 1 0.500 1 ==> 2
+ node_17 --> node_16 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_18 --> H007 12 1 0.333 2 ==> 1
+ node_20 --> H008 9 1 0.333 1 ==> 2
+ node_21 --> H014 9 1 0.333 1 ==> 2
+ 10 1 0.500 1 ==> 2
+ node_21 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 48 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #48 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 22 0 0 0
+ 20 22 0 0 1
+ 18 20 2 1 2
+ 17 18 3 3 3
+ 16 17 2 2 2
+H010 (2) 16 1 1 1
+H001 (7) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H013 (6) 17 0 0 0
+H014 (5) 18 0 0 0
+ 19 20 1 1 1
+H008 (4) 19 1 0 1
+H006 (12) 19 0 0 1
+ 21 22 2 2 2
+H007 (3) 21 1 1 1
+H012 (10) 21 1 1 1
+H011 (13) 21 0 0 0
+H009 (11) 22 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------------ H010
+| |
+| +------------------------ H001
+| |
+| /----------16 /------------ H003
+| | +----------15
+| | | \------------ H005
+| /-----------17 |
+| | | \------------------------ H000
+| | |
+| /----------18 \------------------------------------ H013
+22 | |
+| | \------------------------------------------------- H014
++----------20
+| | /------------ H008
+| \-----------------------------------------------19
+| \------------ H006
+|
+| /------------ H007
+| |
++-----------------------------------------------------------21------------ H012
+| |
+| \------------ H011
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_20 --> node_18 9 1 0.500 1 --> 2
+ 10 1 1.000 1 ==> 2
+ node_18 --> node_17 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ 8 1 1.000 1 ==> 2
+ node_17 --> node_16 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_20 --> node_19 11 1 0.500 2 ==> 1
+ node_19 --> H008 9 1 0.500 1 --> 2
+ node_22 --> node_21 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_21 --> H007 12 1 0.333 2 ==> 1
+ node_21 --> H012 11 1 0.500 2 ==> 1
+ node_22 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 49 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #49 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 22 0 0 0
+ 20 22 0 0 1
+ 18 20 2 1 2
+ 17 18 3 3 3
+ 16 17 2 2 2
+H010 (2) 16 1 1 1
+H013 (6) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H001 (7) 17 0 0 0
+H014 (5) 18 0 0 0
+ 19 20 1 1 1
+H008 (4) 19 1 0 1
+H006 (12) 19 0 0 1
+ 21 22 2 2 2
+H007 (3) 21 1 1 1
+H012 (10) 21 1 1 1
+H011 (13) 21 0 0 0
+H009 (11) 22 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------------ H010
+| |
+| +------------------------ H013
+| |
+| /----------16 /------------ H003
+| | +----------15
+| | | \------------ H005
+| /-----------17 |
+| | | \------------------------ H000
+| | |
+| /----------18 \------------------------------------ H001
+22 | |
+| | \------------------------------------------------- H014
++----------20
+| | /------------ H008
+| \-----------------------------------------------19
+| \------------ H006
+|
+| /------------ H007
+| |
++-----------------------------------------------------------21------------ H012
+| |
+| \------------ H011
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_20 --> node_18 9 1 0.500 1 --> 2
+ 10 1 1.000 1 ==> 2
+ node_18 --> node_17 6 1 0.500 1 ==> 2
+ 7 1 0.500 1 ==> 2
+ 8 1 1.000 1 ==> 2
+ node_17 --> node_16 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_20 --> node_19 11 1 0.500 2 ==> 1
+ node_19 --> H008 9 1 0.500 1 --> 2
+ node_22 --> node_21 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_21 --> H007 12 1 0.333 2 ==> 1
+ node_21 --> H012 11 1 0.500 2 ==> 1
+ node_22 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 50 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #50 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 24 0 0 0
+ 23 24 0 0 1
+ 19 23 1 1 1
+ 18 19 1 1 2
+ 17 18 3 3 3
+ 16 17 2 2 2
+H010 (2) 16 1 1 1
+H013 (6) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H001 (7) 17 0 0 0
+H014 (5) 18 0 0 0
+H008 (4) 19 1 0 1
+ 22 23 0 0 1
+ 21 22 2 2 2
+ 20 21 0 0 1
+H007 (3) 20 1 1 1
+H011 (13) 20 0 0 0
+H012 (10) 21 1 0 1
+H006 (12) 22 1 0 1
+H009 (11) 24 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /--------------------- H010
+| |
+| +--------------------- H013
+| |
+| /--------16 /---------- H003
+| | +---------15
+| | | \---------- H005
+| /---------17 |
+| | | \--------------------- H000
+| | |
+| /--------18 \------------------------------- H001
+24 | |
+| /---------19 \------------------------------------------ H014
+| | |
+| | \---------------------------------------------------- H008
+| |
+| | /---------- H007
++--------23 /---------20
+| | | \---------- H011
+| | /--------21
+| | | \--------------------- H012
+| \------------------------------22
+| \------------------------------- H006
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_19 9 1 1.000 1 ==> 2
+ node_19 --> node_18 10 1 1.000 1 ==> 2
+ node_18 --> node_17 6 1 0.500 1 ==> 2
+ 7 1 0.500 1 ==> 2
+ 8 1 1.000 1 ==> 2
+ node_17 --> node_16 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_19 --> H008 11 1 0.333 2 --> 1
+ node_22 --> node_21 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_20 --> H007 12 1 0.333 2 ==> 1
+ node_21 --> H012 11 1 0.333 2 --> 1
+ node_22 --> H006 11 1 0.333 2 --> 1
+ node_24 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 51 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #51 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 23 0 0 0
+ 21 23 0 0 2
+ 19 21 2 2 2
+ 18 19 1 1 3
+ 17 18 2 2 2
+ 16 17 2 0 2
+H010 (2) 16 1 1 1
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H001 (7) 17 0 0 2
+H013 (6) 18 2 0 2
+H014 (5) 19 0 0 2
+ 20 21 2 0 2
+H007 (3) 20 1 1 1
+H012 (10) 20 1 1 1
+H011 (13) 20 0 0 0
+ 22 23 1 1 1
+H008 (4) 22 1 1 1
+H006 (12) 22 0 0 0
+H009 (11) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /--------------------- H010
+| |
+| | /---------- H003
+| /--------16---------15
+| | | \---------- H005
+| | |
+| /---------17 \--------------------- H000
+| | |
+| /--------18 \------------------------------- H001
+| | |
+| /---------19 \------------------------------------------ H013
+23 | |
+| | \---------------------------------------------------- H014
++--------21
+| | /---------- H007
+| | |
+| \---------------------------------------------------20---------- H012
+| |
+| \---------- H011
+|
+| /---------- H008
++-------------------------------------------------------------22
+| \---------- H006
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_19 9 1 0.500 1 ==> 2
+ 10 1 1.000 1 ==> 2
+ node_19 --> node_18 8 1 1.000 1 ==> 2
+ node_18 --> node_17 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_17 --> node_16 1 1 0.333 1 --> 2
+ 2 1 0.333 1 --> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_18 --> H013 1 1 0.333 1 --> 2
+ 2 1 0.333 1 --> 2
+ node_21 --> node_20 1 1 0.333 1 --> 2
+ 2 1 0.333 1 --> 2
+ node_20 --> H007 12 1 0.333 2 ==> 1
+ node_20 --> H012 11 1 0.500 2 ==> 1
+ node_23 --> node_22 11 1 0.500 2 ==> 1
+ node_22 --> H008 9 1 0.500 1 ==> 2
+ node_23 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 52 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #52 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 22 0 0 0
+ 19 22 2 2 2
+ 18 19 1 1 3
+ 17 18 2 2 2
+ 16 17 2 0 2
+H010 (2) 16 1 1 1
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H013 (6) 17 0 0 2
+H001 (7) 18 2 0 2
+H014 (5) 19 0 0 0
+ 20 22 2 2 2
+H007 (3) 20 1 1 1
+H012 (10) 20 1 1 1
+H011 (13) 20 0 0 0
+ 21 22 1 1 1
+H008 (4) 21 1 1 1
+H006 (12) 21 0 0 0
+H009 (11) 22 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------------ H010
+| |
+| | /------------ H003
+| /----------16----------15
+| | | \------------ H005
+| | |
+| /-----------17 \------------------------ H000
+| | |
+| /----------18 \------------------------------------ H013
+| | |
++----------19 \------------------------------------------------- H001
+22 |
+| \------------------------------------------------------------- H014
+|
+| /------------ H007
+| |
++-----------------------------------------------------------20------------ H012
+| |
+| \------------ H011
+|
+| /------------ H008
++-----------------------------------------------------------21
+| \------------ H006
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_19 9 1 0.500 1 ==> 2
+ 10 1 1.000 1 ==> 2
+ node_19 --> node_18 8 1 1.000 1 ==> 2
+ node_18 --> node_17 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_17 --> node_16 6 1 0.500 1 --> 2
+ 7 1 0.500 1 --> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_18 --> H001 6 1 0.500 1 --> 2
+ 7 1 0.500 1 --> 2
+ node_22 --> node_20 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_20 --> H007 12 1 0.333 2 ==> 1
+ node_20 --> H012 11 1 0.500 2 ==> 1
+ node_22 --> node_21 11 1 0.500 2 ==> 1
+ node_21 --> H008 9 1 0.500 1 ==> 2
+ node_22 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 53 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #53 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 23 0 0 0
+ 21 23 0 0 1
+ 20 21 1 1 1
+ 19 20 1 1 2
+ 18 19 1 1 3
+ 17 18 2 2 2
+ 16 17 2 0 2
+H010 (2) 16 1 1 1
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H013 (6) 17 0 0 2
+H001 (7) 18 2 0 2
+H014 (5) 19 0 0 0
+H008 (4) 20 1 0 1
+H006 (12) 21 1 0 1
+ 22 23 2 2 2
+H007 (3) 22 1 1 1
+H012 (10) 22 1 1 1
+H011 (13) 22 0 0 0
+H009 (11) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------ H010
+| |
+| | /--------- H003
+| /-------16-------15
+| | | \--------- H005
+| | |
+| /--------17 \------------------ H000
+| | |
+| /-------18 \--------------------------- H013
+| | |
+| /-------19 \------------------------------------- H001
+23 | |
+| /-------20 \---------------------------------------------- H014
+| | |
++-------21 \------------------------------------------------------- H008
+| |
+| \---------------------------------------------------------------- H006
+|
+| /--------- H007
+| |
++--------------------------------------------------------------22--------- H012
+| |
+| \--------- H011
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_20 9 1 1.000 1 ==> 2
+ node_20 --> node_19 10 1 1.000 1 ==> 2
+ node_19 --> node_18 8 1 1.000 1 ==> 2
+ node_18 --> node_17 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_17 --> node_16 6 1 0.500 1 --> 2
+ 7 1 0.500 1 --> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_18 --> H001 6 1 0.500 1 --> 2
+ 7 1 0.500 1 --> 2
+ node_20 --> H008 11 1 0.333 2 --> 1
+ node_21 --> H006 11 1 0.333 2 --> 1
+ node_23 --> node_22 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_22 --> H007 12 1 0.333 2 ==> 1
+ node_22 --> H012 11 1 0.333 2 ==> 1
+ node_23 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 54 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #54 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 25 0 0 0
+ 21 25 0 0 1
+ 20 21 1 1 1
+ 19 20 1 1 2
+ 18 19 1 1 3
+ 17 18 2 2 2
+ 16 17 2 0 2
+H010 (2) 16 1 1 1
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H013 (6) 17 0 0 2
+H001 (7) 18 2 0 2
+H014 (5) 19 0 0 0
+H008 (4) 20 1 0 1
+H006 (12) 21 1 0 1
+ 24 25 0 0 1
+ 23 24 2 2 2
+H007 (3) 23 1 0 1
+ 22 23 0 0 1
+H012 (10) 22 1 1 1
+H011 (13) 22 0 0 0
+H009 (11) 24 1 0 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------ H010
+| |
+| | /--------- H003
+| /-------16-------15
+| | | \--------- H005
+| | |
+| /--------17 \------------------ H000
+| | |
+| /-------18 \--------------------------- H013
+| | |
+25 /-------19 \------------------------------------- H001
+| | |
+| /-------20 \---------------------------------------------- H014
+| | |
++-------21 \------------------------------------------------------- H008
+| |
+| \---------------------------------------------------------------- H006
+|
+| /------------------ H007
+| |
+| /-------23 /--------- H012
+| | \-------22
+\--------------------------------------------24 \--------- H011
+ |
+ \--------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_20 9 1 1.000 1 ==> 2
+ node_20 --> node_19 10 1 1.000 1 ==> 2
+ node_19 --> node_18 8 1 1.000 1 ==> 2
+ node_18 --> node_17 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_17 --> node_16 6 1 0.500 1 --> 2
+ 7 1 0.500 1 --> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_18 --> H001 6 1 0.500 1 --> 2
+ 7 1 0.500 1 --> 2
+ node_20 --> H008 11 1 0.333 2 --> 1
+ node_21 --> H006 11 1 0.333 2 --> 1
+ node_24 --> node_23 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_23 --> H007 12 1 0.333 2 --> 1
+ node_22 --> H012 11 1 0.333 2 ==> 1
+ node_24 --> H009 12 1 0.333 2 --> 1
+
+Tree number 55 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #55 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 23 0 0 0
+ 21 23 0 0 1
+ 19 21 2 1 2
+ 18 19 1 1 3
+ 17 18 2 2 2
+ 16 17 2 0 2
+H010 (2) 16 1 1 1
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H013 (6) 17 0 0 2
+H001 (7) 18 2 0 2
+H014 (5) 19 0 0 0
+ 20 21 1 1 1
+H008 (4) 20 1 0 1
+H006 (12) 20 0 0 1
+ 22 23 2 2 2
+H007 (3) 22 1 1 1
+H012 (10) 22 1 1 1
+H011 (13) 22 0 0 0
+H009 (11) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /--------------------- H010
+| |
+| | /---------- H003
+| /--------16---------15
+| | | \---------- H005
+| | |
+| /---------17 \--------------------- H000
+| | |
+| /--------18 \------------------------------- H013
+| | |
+| /---------19 \------------------------------------------ H001
+23 | |
+| | \---------------------------------------------------- H014
++--------21
+| | /---------- H008
+| \---------------------------------------------------20
+| \---------- H006
+|
+| /---------- H007
+| |
++-------------------------------------------------------------22---------- H012
+| |
+| \---------- H011
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_19 9 1 0.500 1 --> 2
+ 10 1 1.000 1 ==> 2
+ node_19 --> node_18 8 1 1.000 1 ==> 2
+ node_18 --> node_17 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_17 --> node_16 6 1 0.500 1 --> 2
+ 7 1 0.500 1 --> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_18 --> H001 6 1 0.500 1 --> 2
+ 7 1 0.500 1 --> 2
+ node_21 --> node_20 11 1 0.500 2 ==> 1
+ node_20 --> H008 9 1 0.500 1 --> 2
+ node_23 --> node_22 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_22 --> H007 12 1 0.333 2 ==> 1
+ node_22 --> H012 11 1 0.500 2 ==> 1
+ node_23 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 56 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #56 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 24 0 0 0
+ 20 24 1 1 1
+ 19 20 1 1 1
+ 18 19 1 1 3
+ 17 18 2 2 2
+ 16 17 2 0 2
+H010 (2) 16 1 1 1
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H013 (6) 17 0 0 2
+H001 (7) 18 2 0 2
+H014 (5) 19 0 0 0
+H008 (4) 20 1 1 1
+ 23 24 0 0 1
+ 22 23 2 2 2
+H007 (3) 22 1 0 1
+ 21 22 0 0 1
+H012 (10) 21 1 1 1
+H011 (13) 21 0 0 0
+H009 (11) 23 1 0 1
+H006 (12) 24 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /--------------------- H010
+| |
+| | /---------- H003
+| /--------16---------15
+| | | \---------- H005
+| | |
+| /---------17 \--------------------- H000
+| | |
+| /--------18 \------------------------------- H013
+| | |
+| /---------19 \------------------------------------------ H001
+24 | |
++--------20 \---------------------------------------------------- H014
+| |
+| \--------------------------------------------------------------- H008
+|
+| /--------------------- H007
+| |
+| /--------22 /---------- H012
+| | \---------21
++----------------------------------------23 \---------- H011
+| |
+| \------------------------------- H009
+|
+\------------------------------------------------------------------------- H006
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_24 --> node_20 9 1 1.000 1 ==> 2
+ node_20 --> node_19 10 1 1.000 1 ==> 2
+ node_19 --> node_18 8 1 1.000 1 ==> 2
+ node_18 --> node_17 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_17 --> node_16 6 1 0.500 1 --> 2
+ 7 1 0.500 1 --> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_18 --> H001 6 1 0.500 1 --> 2
+ 7 1 0.500 1 --> 2
+ node_20 --> H008 11 1 0.333 2 ==> 1
+ node_23 --> node_22 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_22 --> H007 12 1 0.333 2 --> 1
+ node_21 --> H012 11 1 0.333 2 ==> 1
+ node_23 --> H009 12 1 0.333 2 --> 1
+ node_24 --> H006 11 1 0.333 2 ==> 1
+
+Tree number 57 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #57 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 24 0 0 0
+ 20 24 1 1 1
+ 19 20 1 1 1
+ 18 19 1 1 3
+ 17 18 2 2 2
+ 16 17 2 0 2
+H010 (2) 16 1 1 1
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H013 (6) 17 0 0 2
+H001 (7) 18 2 0 2
+H014 (5) 19 0 0 0
+H008 (4) 20 1 1 1
+ 23 24 0 0 1
+ 22 23 2 2 2
+ 21 22 0 0 1
+H007 (3) 21 1 1 1
+H011 (13) 21 0 0 0
+H012 (10) 22 1 0 1
+H006 (12) 23 1 0 1
+H009 (11) 24 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /--------------------- H010
+| |
+| | /---------- H003
+| /--------16---------15
+| | | \---------- H005
+| | |
+| /---------17 \--------------------- H000
+| | |
+| /--------18 \------------------------------- H013
+| | |
+| /---------19 \------------------------------------------ H001
+24 | |
++--------20 \---------------------------------------------------- H014
+| |
+| \--------------------------------------------------------------- H008
+|
+| /---------- H007
+| /---------21
+| | \---------- H011
+| /--------22
+| | \--------------------- H012
++----------------------------------------23
+| \------------------------------- H006
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_24 --> node_20 9 1 1.000 1 ==> 2
+ node_20 --> node_19 10 1 1.000 1 ==> 2
+ node_19 --> node_18 8 1 1.000 1 ==> 2
+ node_18 --> node_17 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_17 --> node_16 6 1 0.500 1 --> 2
+ 7 1 0.500 1 --> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_18 --> H001 6 1 0.500 1 --> 2
+ 7 1 0.500 1 --> 2
+ node_20 --> H008 11 1 0.333 2 ==> 1
+ node_23 --> node_22 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_21 --> H007 12 1 0.333 2 ==> 1
+ node_22 --> H012 11 1 0.333 2 --> 1
+ node_23 --> H006 11 1 0.333 2 --> 1
+ node_24 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 58 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #58 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 21 0 0 0
+ 18 21 2 2 2
+ 17 18 3 3 3
+ 16 17 2 2 2
+H010 (2) 16 1 1 1
+H013 (6) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H001 (7) 17 0 0 0
+H014 (5) 18 0 0 0
+ 19 21 2 2 2
+H007 (3) 19 1 1 1
+H012 (10) 19 1 1 1
+H011 (13) 19 0 0 0
+ 20 21 1 1 1
+H008 (4) 20 1 1 1
+H006 (12) 20 0 0 0
+H009 (11) 21 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /----------------------------- H010
+| |
+| +----------------------------- H013
+| |
+| /-------------16 /--------------- H003
+| | +------------15
+| | | \--------------- H005
+| /------------17 |
+| | | \----------------------------- H000
+| | |
++-------------18 \-------------------------------------------- H001
+21 |
+| \---------------------------------------------------------- H014
+|
+| /--------------- H007
+| |
++--------------------------------------------------------19--------------- H012
+| |
+| \--------------- H011
+|
+| /--------------- H008
++--------------------------------------------------------20
+| \--------------- H006
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_18 9 1 0.500 1 ==> 2
+ 10 1 1.000 1 ==> 2
+ node_18 --> node_17 6 1 0.500 1 ==> 2
+ 7 1 0.500 1 ==> 2
+ 8 1 1.000 1 ==> 2
+ node_17 --> node_16 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_21 --> node_19 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_19 --> H007 12 1 0.333 2 ==> 1
+ node_19 --> H012 11 1 0.500 2 ==> 1
+ node_21 --> node_20 11 1 0.500 2 ==> 1
+ node_20 --> H008 9 1 0.500 1 ==> 2
+ node_21 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 59 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #59 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 23 0 0 0
+ 19 23 1 1 1
+ 18 19 1 1 1
+ 17 18 3 3 3
+ 16 17 2 2 2
+H010 (2) 16 1 1 1
+H013 (6) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H001 (7) 17 0 0 0
+H014 (5) 18 0 0 0
+H008 (4) 19 1 1 1
+ 22 23 0 0 1
+ 21 22 2 2 2
+H007 (3) 21 1 0 1
+ 20 21 0 0 1
+H012 (10) 20 1 1 1
+H011 (13) 20 0 0 0
+H009 (11) 22 1 0 1
+H006 (12) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------------ H010
+| |
+| +------------------------ H013
+| |
+| /----------16 /------------ H003
+| | +----------15
+| | | \------------ H005
+| /-----------17 |
+| | | \------------------------ H000
+| | |
+| /----------18 \------------------------------------ H001
+23 | |
++----------19 \------------------------------------------------- H014
+| |
+| \------------------------------------------------------------- H008
+|
+| /------------------------ H007
+| |
+| /----------21 /------------ H012
+| | \----------20
++-----------------------------------22 \------------ H011
+| |
+| \------------------------------------ H009
+|
+\------------------------------------------------------------------------- H006
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_19 9 1 1.000 1 ==> 2
+ node_19 --> node_18 10 1 1.000 1 ==> 2
+ node_18 --> node_17 6 1 0.500 1 ==> 2
+ 7 1 0.500 1 ==> 2
+ 8 1 1.000 1 ==> 2
+ node_17 --> node_16 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_19 --> H008 11 1 0.333 2 ==> 1
+ node_22 --> node_21 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_21 --> H007 12 1 0.333 2 --> 1
+ node_20 --> H012 11 1 0.333 2 ==> 1
+ node_22 --> H009 12 1 0.333 2 --> 1
+ node_23 --> H006 11 1 0.333 2 ==> 1
+
+Tree number 60 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #60 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 23 0 0 0
+ 19 23 1 1 1
+ 18 19 1 1 1
+ 17 18 3 3 3
+ 16 17 2 2 2
+H010 (2) 16 1 1 1
+H013 (6) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H001 (7) 17 0 0 0
+H014 (5) 18 0 0 0
+H008 (4) 19 1 1 1
+ 22 23 0 0 1
+ 21 22 2 2 2
+ 20 21 0 0 1
+H007 (3) 20 1 1 1
+H011 (13) 20 0 0 0
+H012 (10) 21 1 0 1
+H006 (12) 22 1 0 1
+H009 (11) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------------ H010
+| |
+| +------------------------ H013
+| |
+| /----------16 /------------ H003
+| | +----------15
+| | | \------------ H005
+| /-----------17 |
+| | | \------------------------ H000
+| | |
+| /----------18 \------------------------------------ H001
+23 | |
++----------19 \------------------------------------------------- H014
+| |
+| \------------------------------------------------------------- H008
+|
+| /------------ H007
+| /----------20
+| | \------------ H011
+| /----------21
+| | \------------------------ H012
++-----------------------------------22
+| \------------------------------------ H006
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_19 9 1 1.000 1 ==> 2
+ node_19 --> node_18 10 1 1.000 1 ==> 2
+ node_18 --> node_17 6 1 0.500 1 ==> 2
+ 7 1 0.500 1 ==> 2
+ 8 1 1.000 1 ==> 2
+ node_17 --> node_16 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_19 --> H008 11 1 0.333 2 ==> 1
+ node_22 --> node_21 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_20 --> H007 12 1 0.333 2 ==> 1
+ node_21 --> H012 11 1 0.333 2 --> 1
+ node_22 --> H006 11 1 0.333 2 --> 1
+ node_23 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 61 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #61 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 21 0 0 0
+ 18 21 2 2 2
+ 17 18 3 3 3
+ 16 17 2 2 2
+H010 (2) 16 1 1 1
+H001 (7) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H013 (6) 17 0 0 0
+H014 (5) 18 0 0 0
+ 19 21 2 2 2
+H007 (3) 19 1 1 1
+H012 (10) 19 1 1 1
+H011 (13) 19 0 0 0
+ 20 21 1 1 1
+H008 (4) 20 1 1 1
+H006 (12) 20 0 0 0
+H009 (11) 21 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /----------------------------- H010
+| |
+| +----------------------------- H001
+| |
+| /-------------16 /--------------- H003
+| | +------------15
+| | | \--------------- H005
+| /------------17 |
+| | | \----------------------------- H000
+| | |
++-------------18 \-------------------------------------------- H013
+21 |
+| \---------------------------------------------------------- H014
+|
+| /--------------- H007
+| |
++--------------------------------------------------------19--------------- H012
+| |
+| \--------------- H011
+|
+| /--------------- H008
++--------------------------------------------------------20
+| \--------------- H006
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_18 9 1 0.500 1 ==> 2
+ 10 1 1.000 1 ==> 2
+ node_18 --> node_17 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ 8 1 1.000 1 ==> 2
+ node_17 --> node_16 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_21 --> node_19 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_19 --> H007 12 1 0.333 2 ==> 1
+ node_19 --> H012 11 1 0.500 2 ==> 1
+ node_21 --> node_20 11 1 0.500 2 ==> 1
+ node_20 --> H008 9 1 0.500 1 ==> 2
+ node_21 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 62 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #62 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 23 0 0 0
+ 19 23 1 1 1
+ 18 19 1 1 1
+ 17 18 3 3 3
+ 16 17 2 2 2
+H010 (2) 16 1 1 1
+H001 (7) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H013 (6) 17 0 0 0
+H014 (5) 18 0 0 0
+H008 (4) 19 1 1 1
+ 22 23 0 0 1
+ 21 22 2 2 2
+H007 (3) 21 1 0 1
+ 20 21 0 0 1
+H012 (10) 20 1 1 1
+H011 (13) 20 0 0 0
+H009 (11) 22 1 0 1
+H006 (12) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------------ H010
+| |
+| +------------------------ H001
+| |
+| /----------16 /------------ H003
+| | +----------15
+| | | \------------ H005
+| /-----------17 |
+| | | \------------------------ H000
+| | |
+| /----------18 \------------------------------------ H013
+23 | |
++----------19 \------------------------------------------------- H014
+| |
+| \------------------------------------------------------------- H008
+|
+| /------------------------ H007
+| |
+| /----------21 /------------ H012
+| | \----------20
++-----------------------------------22 \------------ H011
+| |
+| \------------------------------------ H009
+|
+\------------------------------------------------------------------------- H006
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_19 9 1 1.000 1 ==> 2
+ node_19 --> node_18 10 1 1.000 1 ==> 2
+ node_18 --> node_17 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ 8 1 1.000 1 ==> 2
+ node_17 --> node_16 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_19 --> H008 11 1 0.333 2 ==> 1
+ node_22 --> node_21 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_21 --> H007 12 1 0.333 2 --> 1
+ node_20 --> H012 11 1 0.333 2 ==> 1
+ node_22 --> H009 12 1 0.333 2 --> 1
+ node_23 --> H006 11 1 0.333 2 ==> 1
+
+Tree number 63 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #63 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 23 0 0 0
+ 19 23 1 1 1
+ 18 19 1 1 1
+ 17 18 3 3 3
+ 16 17 2 2 2
+H010 (2) 16 1 1 1
+H001 (7) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H013 (6) 17 0 0 0
+H014 (5) 18 0 0 0
+H008 (4) 19 1 1 1
+ 22 23 0 0 1
+ 21 22 2 2 2
+ 20 21 0 0 1
+H007 (3) 20 1 1 1
+H011 (13) 20 0 0 0
+H012 (10) 21 1 0 1
+H006 (12) 22 1 0 1
+H009 (11) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------------ H010
+| |
+| +------------------------ H001
+| |
+| /----------16 /------------ H003
+| | +----------15
+| | | \------------ H005
+| /-----------17 |
+| | | \------------------------ H000
+| | |
+| /----------18 \------------------------------------ H013
+23 | |
++----------19 \------------------------------------------------- H014
+| |
+| \------------------------------------------------------------- H008
+|
+| /------------ H007
+| /----------20
+| | \------------ H011
+| /----------21
+| | \------------------------ H012
++-----------------------------------22
+| \------------------------------------ H006
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_19 9 1 1.000 1 ==> 2
+ node_19 --> node_18 10 1 1.000 1 ==> 2
+ node_18 --> node_17 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ 8 1 1.000 1 ==> 2
+ node_17 --> node_16 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_19 --> H008 11 1 0.333 2 ==> 1
+ node_22 --> node_21 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_20 --> H007 12 1 0.333 2 ==> 1
+ node_21 --> H012 11 1 0.333 2 --> 1
+ node_22 --> H006 11 1 0.333 2 --> 1
+ node_23 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 64 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #64 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 25 0 0 0
+ 21 25 0 0 1
+ 19 21 2 1 2
+ 18 19 1 1 3
+ 17 18 2 2 2
+ 16 17 2 0 2
+H010 (2) 16 1 1 1
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H001 (7) 17 0 0 2
+H013 (6) 18 2 0 2
+H014 (5) 19 0 0 0
+ 20 21 1 1 1
+H008 (4) 20 1 0 1
+H006 (12) 20 0 0 1
+ 24 25 0 0 1
+ 23 24 2 2 2
+H007 (3) 23 1 0 1
+ 22 23 0 0 1
+H012 (10) 22 1 1 1
+H011 (13) 22 0 0 0
+H009 (11) 24 1 0 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /--------------------- H010
+| |
+| | /---------- H003
+| /--------16---------15
+| | | \---------- H005
+| | |
+| /---------17 \--------------------- H000
+| | |
+| /--------18 \------------------------------- H001
+| | |
+25 /---------19 \------------------------------------------ H013
+| | |
+| | \---------------------------------------------------- H014
++--------21
+| | /---------- H008
+| \---------------------------------------------------20
+| \---------- H006
+|
+| /--------------------- H007
+| |
+| /--------23 /---------- H012
+| | \---------22
+\----------------------------------------24 \---------- H011
+ |
+ \------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_19 9 1 0.500 1 --> 2
+ 10 1 1.000 1 ==> 2
+ node_19 --> node_18 8 1 1.000 1 ==> 2
+ node_18 --> node_17 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_17 --> node_16 1 1 0.333 1 --> 2
+ 2 1 0.333 1 --> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_18 --> H013 1 1 0.333 1 --> 2
+ 2 1 0.333 1 --> 2
+ node_21 --> node_20 11 1 0.500 2 ==> 1
+ node_20 --> H008 9 1 0.500 1 --> 2
+ node_24 --> node_23 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_23 --> H007 12 1 0.333 2 --> 1
+ node_22 --> H012 11 1 0.500 2 ==> 1
+ node_24 --> H009 12 1 0.333 2 --> 1
+
+Tree number 65 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #65 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 24 0 0 0
+ 19 24 2 2 2
+ 18 19 1 1 3
+ 17 18 2 2 2
+ 16 17 2 0 2
+H010 (2) 16 1 1 1
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H001 (7) 17 0 0 2
+H013 (6) 18 2 0 2
+H014 (5) 19 0 0 0
+ 22 24 0 0 1
+ 21 22 2 2 2
+H007 (3) 21 1 0 1
+ 20 21 0 0 1
+H012 (10) 20 1 1 1
+H011 (13) 20 0 0 0
+H009 (11) 22 1 0 1
+ 23 24 1 1 1
+H008 (4) 23 1 1 1
+H006 (12) 23 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------------ H010
+| |
+| | /------------ H003
+| /----------16----------15
+| | | \------------ H005
+| | |
+| /-----------17 \------------------------ H000
+| | |
+| /----------18 \------------------------------------ H001
+| | |
++----------19 \------------------------------------------------- H013
+24 |
+| \------------------------------------------------------------- H014
+|
+| /------------------------ H007
+| |
+| /----------21 /------------ H012
+| | \----------20
++-----------------------------------22 \------------ H011
+| |
+| \------------------------------------ H009
+|
+| /------------ H008
+\-----------------------------------------------------------23
+ \------------ H006
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_24 --> node_19 9 1 0.500 1 ==> 2
+ 10 1 1.000 1 ==> 2
+ node_19 --> node_18 8 1 1.000 1 ==> 2
+ node_18 --> node_17 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_17 --> node_16 1 1 0.333 1 --> 2
+ 2 1 0.333 1 --> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_18 --> H013 1 1 0.333 1 --> 2
+ 2 1 0.333 1 --> 2
+ node_22 --> node_21 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_21 --> H007 12 1 0.333 2 --> 1
+ node_20 --> H012 11 1 0.500 2 ==> 1
+ node_22 --> H009 12 1 0.333 2 --> 1
+ node_24 --> node_23 11 1 0.500 2 ==> 1
+ node_23 --> H008 9 1 0.500 1 ==> 2
+
+Tree number 66 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #66 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 23 0 0 0
+ 19 23 2 2 2
+ 18 19 1 1 3
+ 17 18 2 2 2
+ 16 17 2 0 2
+H010 (2) 16 1 1 1
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H001 (7) 17 0 0 2
+H013 (6) 18 2 0 2
+H014 (5) 19 0 0 0
+ 22 23 1 1 1
+ 21 22 2 2 2
+ 20 21 1 1 1
+H007 (3) 20 1 1 1
+H011 (13) 20 0 0 0
+H012 (10) 21 0 0 0
+H008 (4) 22 1 1 1
+H006 (12) 22 0 0 0
+H009 (11) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------------ H010
+| |
+| | /------------ H003
+| /----------16----------15
+| | | \------------ H005
+| | |
+| /-----------17 \------------------------ H000
+| | |
+| /----------18 \------------------------------------ H001
+| | |
++----------19 \------------------------------------------------- H013
+23 |
+| \------------------------------------------------------------- H014
+|
+| /------------ H007
+| /----------20
+| | \------------ H011
+| /----------21
+| | \------------------------ H012
+| |
++-----------------------------------22------------------------------------ H008
+| |
+| \------------------------------------ H006
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_19 9 1 0.500 1 ==> 2
+ 10 1 1.000 1 ==> 2
+ node_19 --> node_18 8 1 1.000 1 ==> 2
+ node_18 --> node_17 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_17 --> node_16 1 1 0.333 1 --> 2
+ 2 1 0.333 1 --> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_18 --> H013 1 1 0.333 1 --> 2
+ 2 1 0.333 1 --> 2
+ node_23 --> node_22 11 1 0.500 2 ==> 1
+ node_22 --> node_21 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_21 --> node_20 11 1 0.500 1 ==> 2
+ node_20 --> H007 12 1 0.333 2 ==> 1
+ node_22 --> H008 9 1 0.500 1 ==> 2
+ node_23 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 67 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #67 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 24 0 0 0
+ 19 24 2 2 2
+ 18 19 1 1 3
+ 17 18 2 2 2
+ 16 17 2 0 2
+H010 (2) 16 1 1 1
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H001 (7) 17 0 0 2
+H013 (6) 18 2 0 2
+H014 (5) 19 0 0 0
+ 23 24 0 0 1
+ 21 23 2 2 2
+ 20 21 0 0 1
+H007 (3) 20 1 1 1
+H011 (13) 20 0 0 0
+H012 (10) 21 1 0 1
+ 22 23 1 0 1
+H008 (4) 22 1 1 1
+H006 (12) 22 0 0 0
+H009 (11) 24 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------------ H010
+| |
+| | /------------ H003
+| /----------16----------15
+| | | \------------ H005
+| | |
+| /-----------17 \------------------------ H000
+| | |
+| /----------18 \------------------------------------ H001
+| | |
++----------19 \------------------------------------------------- H013
+24 |
+| \------------------------------------------------------------- H014
+|
+| /------------ H007
+| /----------20
+| | \------------ H011
+| /----------21
+| | \------------------------ H012
++-----------------------------------23
+| | /------------ H008
+| \----------------------22
+| \------------ H006
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_24 --> node_19 9 1 0.500 1 ==> 2
+ 10 1 1.000 1 ==> 2
+ node_19 --> node_18 8 1 1.000 1 ==> 2
+ node_18 --> node_17 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_17 --> node_16 1 1 0.333 1 --> 2
+ 2 1 0.333 1 --> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_18 --> H013 1 1 0.333 1 --> 2
+ 2 1 0.333 1 --> 2
+ node_23 --> node_21 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_20 --> H007 12 1 0.333 2 ==> 1
+ node_21 --> H012 11 1 0.500 2 --> 1
+ node_23 --> node_22 11 1 0.500 2 --> 1
+ node_22 --> H008 9 1 0.500 1 ==> 2
+ node_24 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 68 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #68 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 25 0 0 0
+ 24 25 0 0 1
+ 20 24 1 1 1
+ 19 20 1 1 2
+ 18 19 1 1 3
+ 17 18 2 2 2
+ 16 17 2 0 2
+H010 (2) 16 1 1 1
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H001 (7) 17 0 0 2
+H013 (6) 18 2 0 2
+H014 (5) 19 0 0 0
+H008 (4) 20 1 0 1
+ 23 24 0 0 1
+ 22 23 2 2 2
+ 21 22 0 0 1
+H007 (3) 21 1 1 1
+H011 (13) 21 0 0 0
+H012 (10) 22 1 0 1
+H006 (12) 23 1 0 1
+H009 (11) 25 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------ H010
+| |
+| | /--------- H003
+| /-------16-------15
+| | | \--------- H005
+| | |
+| /--------17 \------------------ H000
+| | |
+| /-------18 \--------------------------- H001
+| | |
+| /-------19 \------------------------------------- H013
+25 | |
+| /-------20 \---------------------------------------------- H014
+| | |
+| | \------------------------------------------------------- H008
+| |
+| | /--------- H007
++-------24 /-------21
+| | | \--------- H011
+| | /-------22
+| | | \------------------ H012
+| \-----------------------------------23
+| \--------------------------- H006
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_24 --> node_20 9 1 1.000 1 ==> 2
+ node_20 --> node_19 10 1 1.000 1 ==> 2
+ node_19 --> node_18 8 1 1.000 1 ==> 2
+ node_18 --> node_17 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_17 --> node_16 1 1 0.333 1 --> 2
+ 2 1 0.333 1 --> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_18 --> H013 1 1 0.333 1 --> 2
+ 2 1 0.333 1 --> 2
+ node_20 --> H008 11 1 0.333 2 --> 1
+ node_23 --> node_22 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_21 --> H007 12 1 0.333 2 ==> 1
+ node_22 --> H012 11 1 0.333 2 --> 1
+ node_23 --> H006 11 1 0.333 2 --> 1
+ node_25 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 69 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #69 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 25 0 0 0
+ 21 25 0 0 1
+ 20 21 1 1 1
+ 19 20 1 1 2
+ 18 19 1 1 3
+ 17 18 2 2 2
+ 16 17 2 0 2
+H010 (2) 16 1 1 1
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H001 (7) 17 0 0 2
+H013 (6) 18 2 0 2
+H014 (5) 19 0 0 0
+H008 (4) 20 1 0 1
+H006 (12) 21 1 0 1
+ 24 25 0 0 1
+ 23 24 2 2 2
+H007 (3) 23 1 0 1
+ 22 23 0 0 1
+H012 (10) 22 1 1 1
+H011 (13) 22 0 0 0
+H009 (11) 24 1 0 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------ H010
+| |
+| | /--------- H003
+| /-------16-------15
+| | | \--------- H005
+| | |
+| /--------17 \------------------ H000
+| | |
+| /-------18 \--------------------------- H001
+| | |
+25 /-------19 \------------------------------------- H013
+| | |
+| /-------20 \---------------------------------------------- H014
+| | |
++-------21 \------------------------------------------------------- H008
+| |
+| \---------------------------------------------------------------- H006
+|
+| /------------------ H007
+| |
+| /-------23 /--------- H012
+| | \-------22
+\--------------------------------------------24 \--------- H011
+ |
+ \--------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_20 9 1 1.000 1 ==> 2
+ node_20 --> node_19 10 1 1.000 1 ==> 2
+ node_19 --> node_18 8 1 1.000 1 ==> 2
+ node_18 --> node_17 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_17 --> node_16 1 1 0.333 1 --> 2
+ 2 1 0.333 1 --> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_18 --> H013 1 1 0.333 1 --> 2
+ 2 1 0.333 1 --> 2
+ node_20 --> H008 11 1 0.333 2 --> 1
+ node_21 --> H006 11 1 0.333 2 --> 1
+ node_24 --> node_23 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_23 --> H007 12 1 0.333 2 --> 1
+ node_22 --> H012 11 1 0.333 2 ==> 1
+ node_24 --> H009 12 1 0.333 2 --> 1
+
+Tree number 70 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #70 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 25 0 0 0
+ 24 25 0 0 1
+ 19 24 2 1 2
+ 18 19 1 1 3
+ 17 18 2 2 2
+ 16 17 2 0 2
+H010 (2) 16 1 1 1
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H001 (7) 17 0 0 2
+H013 (6) 18 2 0 2
+H014 (5) 19 0 0 0
+ 23 24 1 1 1
+ 22 23 0 0 1
+ 21 22 2 2 2
+ 20 21 1 1 1
+H007 (3) 20 1 1 1
+H011 (13) 20 0 0 0
+H012 (10) 21 0 0 0
+H006 (12) 22 0 0 0
+H008 (4) 23 1 0 1
+H009 (11) 25 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /--------------------- H010
+| |
+| | /---------- H003
+| /--------16---------15
+| | | \---------- H005
+| | |
+| /---------17 \--------------------- H000
+| | |
+| /--------18 \------------------------------- H001
+| | |
+| /---------19 \------------------------------------------ H013
+25 | |
+| | \---------------------------------------------------- H014
+| |
+| | /---------- H007
+| | /---------20
++--------24 | \---------- H011
+| | /--------21
+| | | \--------------------- H012
+| | /---------22
+| | | \------------------------------- H006
+| \-------------------23
+| \------------------------------------------ H008
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_24 --> node_19 9 1 0.500 1 --> 2
+ 10 1 1.000 1 ==> 2
+ node_19 --> node_18 8 1 1.000 1 ==> 2
+ node_18 --> node_17 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_17 --> node_16 1 1 0.333 1 --> 2
+ 2 1 0.333 1 --> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_18 --> H013 1 1 0.333 1 --> 2
+ 2 1 0.333 1 --> 2
+ node_24 --> node_23 11 1 0.500 2 ==> 1
+ node_22 --> node_21 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_21 --> node_20 11 1 0.500 1 ==> 2
+ node_20 --> H007 12 1 0.333 2 ==> 1
+ node_23 --> H008 9 1 0.500 1 --> 2
+ node_25 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 71 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #71 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 25 0 0 0
+ 24 25 0 0 1
+ 20 24 1 1 1
+ 19 20 1 1 2
+ 18 19 1 1 3
+ 17 18 2 2 2
+ 16 17 2 0 2
+H010 (2) 16 1 1 1
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H013 (6) 17 0 0 2
+H001 (7) 18 2 0 2
+H014 (5) 19 0 0 0
+H008 (4) 20 1 0 1
+ 23 24 0 0 1
+ 22 23 2 2 2
+ 21 22 0 0 1
+H007 (3) 21 1 1 1
+H011 (13) 21 0 0 0
+H012 (10) 22 1 0 1
+H006 (12) 23 1 0 1
+H009 (11) 25 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------ H010
+| |
+| | /--------- H003
+| /-------16-------15
+| | | \--------- H005
+| | |
+| /--------17 \------------------ H000
+| | |
+| /-------18 \--------------------------- H013
+| | |
+| /-------19 \------------------------------------- H001
+25 | |
+| /-------20 \---------------------------------------------- H014
+| | |
+| | \------------------------------------------------------- H008
+| |
+| | /--------- H007
++-------24 /-------21
+| | | \--------- H011
+| | /-------22
+| | | \------------------ H012
+| \-----------------------------------23
+| \--------------------------- H006
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_24 --> node_20 9 1 1.000 1 ==> 2
+ node_20 --> node_19 10 1 1.000 1 ==> 2
+ node_19 --> node_18 8 1 1.000 1 ==> 2
+ node_18 --> node_17 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_17 --> node_16 6 1 0.500 1 --> 2
+ 7 1 0.500 1 --> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_18 --> H001 6 1 0.500 1 --> 2
+ 7 1 0.500 1 --> 2
+ node_20 --> H008 11 1 0.333 2 --> 1
+ node_23 --> node_22 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_21 --> H007 12 1 0.333 2 ==> 1
+ node_22 --> H012 11 1 0.333 2 --> 1
+ node_23 --> H006 11 1 0.333 2 --> 1
+ node_25 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 72 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #72 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 25 0 0 0
+ 24 25 0 0 1
+ 21 24 0 0 1
+ 20 21 1 1 1
+ 19 20 1 1 2
+ 18 19 1 1 3
+ 17 18 2 2 2
+ 16 17 2 0 2
+H010 (2) 16 1 1 1
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H013 (6) 17 0 0 2
+H001 (7) 18 2 0 2
+H014 (5) 19 0 0 0
+H008 (4) 20 1 0 1
+H006 (12) 21 1 0 1
+ 23 24 2 2 2
+ 22 23 0 0 1
+H007 (3) 22 1 1 1
+H011 (13) 22 0 0 0
+H012 (10) 23 1 0 1
+H009 (11) 25 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /---------------- H010
+| |
+| | /-------- H003
+| /------16------15
+| | | \-------- H005
+| | |
+| /------17 \---------------- H000
+| | |
+| /-------18 \------------------------ H013
+| | |
+| /------19 \-------------------------------- H001
+25 | |
+| /------20 \----------------------------------------- H014
+| | |
+| /------21 \------------------------------------------------- H008
+| | |
+| | \--------------------------------------------------------- H006
+| |
++------24 /-------- H007
+| | /------22
+| | | \-------- H011
+| \-----------------------------------------------23
+| \---------------- H012
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_20 9 1 1.000 1 ==> 2
+ node_20 --> node_19 10 1 1.000 1 ==> 2
+ node_19 --> node_18 8 1 1.000 1 ==> 2
+ node_18 --> node_17 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_17 --> node_16 6 1 0.500 1 --> 2
+ 7 1 0.500 1 --> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_18 --> H001 6 1 0.500 1 --> 2
+ 7 1 0.500 1 --> 2
+ node_20 --> H008 11 1 0.333 2 --> 1
+ node_21 --> H006 11 1 0.333 2 --> 1
+ node_24 --> node_23 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_22 --> H007 12 1 0.333 2 ==> 1
+ node_23 --> H012 11 1 0.333 2 --> 1
+ node_25 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 73 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #73 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 23 0 0 0
+ 18 23 2 2 2
+ 17 18 3 3 3
+ 16 17 2 2 2
+H010 (2) 16 1 1 1
+H001 (7) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H013 (6) 17 0 0 0
+H014 (5) 18 0 0 0
+ 21 23 0 0 1
+ 20 21 2 2 2
+H007 (3) 20 1 0 1
+ 19 20 0 0 1
+H012 (10) 19 1 1 1
+H011 (13) 19 0 0 0
+H009 (11) 21 1 0 1
+ 22 23 1 1 1
+H008 (4) 22 1 1 1
+H006 (12) 22 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /----------------------------- H010
+| |
+| +----------------------------- H001
+| |
+| /-------------16 /--------------- H003
+| | +------------15
+| | | \--------------- H005
+| /------------17 |
+| | | \----------------------------- H000
+| | |
++-------------18 \-------------------------------------------- H013
+23 |
+| \---------------------------------------------------------- H014
+|
+| /----------------------------- H007
+| |
+| /-------------20 /--------------- H012
+| | \------------19
++---------------------------21 \--------------- H011
+| |
+| \-------------------------------------------- H009
+|
+| /--------------- H008
+\--------------------------------------------------------22
+ \--------------- H006
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_18 9 1 0.500 1 ==> 2
+ 10 1 1.000 1 ==> 2
+ node_18 --> node_17 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ 8 1 1.000 1 ==> 2
+ node_17 --> node_16 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_21 --> node_20 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_20 --> H007 12 1 0.333 2 --> 1
+ node_19 --> H012 11 1 0.500 2 ==> 1
+ node_21 --> H009 12 1 0.333 2 --> 1
+ node_23 --> node_22 11 1 0.500 2 ==> 1
+ node_22 --> H008 9 1 0.500 1 ==> 2
+
+Tree number 74 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #74 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 23 0 0 0
+ 18 23 2 2 2
+ 17 18 3 3 3
+ 16 17 2 2 2
+H010 (2) 16 1 1 1
+H001 (7) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H013 (6) 17 0 0 0
+H014 (5) 18 0 0 0
+ 22 23 0 0 1
+ 20 22 2 2 2
+ 19 20 0 0 1
+H007 (3) 19 1 1 1
+H011 (13) 19 0 0 0
+H012 (10) 20 1 0 1
+ 21 22 1 0 1
+H008 (4) 21 1 1 1
+H006 (12) 21 0 0 0
+H009 (11) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /----------------------------- H010
+| |
+| +----------------------------- H001
+| |
+| /-------------16 /--------------- H003
+| | +------------15
+| | | \--------------- H005
+| /------------17 |
+| | | \----------------------------- H000
+| | |
++-------------18 \-------------------------------------------- H013
+23 |
+| \---------------------------------------------------------- H014
+|
+| /--------------- H007
+| /------------19
+| | \--------------- H011
+| /-------------20
+| | \----------------------------- H012
++---------------------------22
+| | /--------------- H008
+| \---------------------------21
+| \--------------- H006
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_18 9 1 0.500 1 ==> 2
+ 10 1 1.000 1 ==> 2
+ node_18 --> node_17 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ 8 1 1.000 1 ==> 2
+ node_17 --> node_16 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_22 --> node_20 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_19 --> H007 12 1 0.333 2 ==> 1
+ node_20 --> H012 11 1 0.500 2 --> 1
+ node_22 --> node_21 11 1 0.500 2 --> 1
+ node_21 --> H008 9 1 0.500 1 ==> 2
+ node_23 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 75 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #75 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 22 0 0 0
+ 18 22 2 2 2
+ 17 18 3 3 3
+ 16 17 2 2 2
+H010 (2) 16 1 1 1
+H001 (7) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H013 (6) 17 0 0 0
+H014 (5) 18 0 0 0
+ 21 22 1 1 1
+ 20 21 2 2 2
+ 19 20 1 1 1
+H007 (3) 19 1 1 1
+H011 (13) 19 0 0 0
+H012 (10) 20 0 0 0
+H008 (4) 21 1 1 1
+H006 (12) 21 0 0 0
+H009 (11) 22 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /----------------------------- H010
+| |
+| +----------------------------- H001
+| |
+| /-------------16 /--------------- H003
+| | +------------15
+| | | \--------------- H005
+| /------------17 |
+| | | \----------------------------- H000
+| | |
++-------------18 \-------------------------------------------- H013
+22 |
+| \---------------------------------------------------------- H014
+|
+| /--------------- H007
+| /------------19
+| | \--------------- H011
+| /-------------20
+| | \----------------------------- H012
+| |
++---------------------------21-------------------------------------------- H008
+| |
+| \-------------------------------------------- H006
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_18 9 1 0.500 1 ==> 2
+ 10 1 1.000 1 ==> 2
+ node_18 --> node_17 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ 8 1 1.000 1 ==> 2
+ node_17 --> node_16 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_22 --> node_21 11 1 0.500 2 ==> 1
+ node_21 --> node_20 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_20 --> node_19 11 1 0.500 1 ==> 2
+ node_19 --> H007 12 1 0.333 2 ==> 1
+ node_21 --> H008 9 1 0.500 1 ==> 2
+ node_22 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 76 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #76 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 24 0 0 0
+ 23 24 0 0 1
+ 18 23 2 1 2
+ 17 18 3 3 3
+ 16 17 2 2 2
+H010 (2) 16 1 1 1
+H001 (7) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H013 (6) 17 0 0 0
+H014 (5) 18 0 0 0
+ 22 23 1 1 1
+ 21 22 0 0 1
+ 20 21 2 2 2
+ 19 20 1 1 1
+H007 (3) 19 1 1 1
+H011 (13) 19 0 0 0
+H012 (10) 20 0 0 0
+H006 (12) 21 0 0 0
+H008 (4) 22 1 0 1
+H009 (11) 24 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------------ H010
+| |
+| +------------------------ H001
+| |
+| /----------16 /------------ H003
+| | +----------15
+| | | \------------ H005
+| /-----------17 |
+| | | \------------------------ H000
+| | |
+| /----------18 \------------------------------------ H013
+24 | |
+| | \------------------------------------------------- H014
+| |
+| | /------------ H007
+| | /----------19
++----------23 | \------------ H011
+| | /----------20
+| | | \------------------------ H012
+| | /-----------21
+| | | \------------------------------------ H006
+| \----------22
+| \------------------------------------------------- H008
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_18 9 1 0.500 1 --> 2
+ 10 1 1.000 1 ==> 2
+ node_18 --> node_17 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ 8 1 1.000 1 ==> 2
+ node_17 --> node_16 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_23 --> node_22 11 1 0.500 2 ==> 1
+ node_21 --> node_20 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_20 --> node_19 11 1 0.500 1 ==> 2
+ node_19 --> H007 12 1 0.333 2 ==> 1
+ node_22 --> H008 9 1 0.500 1 --> 2
+ node_24 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 77 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #77 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 24 0 0 0
+ 20 24 0 0 1
+ 18 20 2 1 2
+ 17 18 3 3 3
+ 16 17 2 2 2
+H010 (2) 16 1 1 1
+H001 (7) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H013 (6) 17 0 0 0
+H014 (5) 18 0 0 0
+ 19 20 1 1 1
+H008 (4) 19 1 0 1
+H006 (12) 19 0 0 1
+ 23 24 0 0 1
+ 22 23 2 2 2
+H007 (3) 22 1 0 1
+ 21 22 0 0 1
+H012 (10) 21 1 1 1
+H011 (13) 21 0 0 0
+H009 (11) 23 1 0 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------------ H010
+| |
+| +------------------------ H001
+| |
+| /----------16 /------------ H003
+| | +----------15
+| | | \------------ H005
+| /-----------17 |
+| | | \------------------------ H000
+| | |
+24 /----------18 \------------------------------------ H013
+| | |
+| | \------------------------------------------------- H014
++----------20
+| | /------------ H008
+| \-----------------------------------------------19
+| \------------ H006
+|
+| /------------------------ H007
+| |
+| /----------22 /------------ H012
+| | \----------21
+\-----------------------------------23 \------------ H011
+ |
+ \------------------------------------ H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_20 --> node_18 9 1 0.500 1 --> 2
+ 10 1 1.000 1 ==> 2
+ node_18 --> node_17 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ 8 1 1.000 1 ==> 2
+ node_17 --> node_16 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_20 --> node_19 11 1 0.500 2 ==> 1
+ node_19 --> H008 9 1 0.500 1 --> 2
+ node_23 --> node_22 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_22 --> H007 12 1 0.333 2 --> 1
+ node_21 --> H012 11 1 0.500 2 ==> 1
+ node_23 --> H009 12 1 0.333 2 --> 1
+
+Tree number 78 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #78 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 24 0 0 0
+ 20 24 0 0 1
+ 18 20 2 1 2
+ 17 18 3 3 3
+ 16 17 2 2 2
+H010 (2) 16 1 1 1
+H013 (6) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H001 (7) 17 0 0 0
+H014 (5) 18 0 0 0
+ 19 20 1 1 1
+H008 (4) 19 1 0 1
+H006 (12) 19 0 0 1
+ 23 24 0 0 1
+ 22 23 2 2 2
+H007 (3) 22 1 0 1
+ 21 22 0 0 1
+H012 (10) 21 1 1 1
+H011 (13) 21 0 0 0
+H009 (11) 23 1 0 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------------ H010
+| |
+| +------------------------ H013
+| |
+| /----------16 /------------ H003
+| | +----------15
+| | | \------------ H005
+| /-----------17 |
+| | | \------------------------ H000
+| | |
+24 /----------18 \------------------------------------ H001
+| | |
+| | \------------------------------------------------- H014
++----------20
+| | /------------ H008
+| \-----------------------------------------------19
+| \------------ H006
+|
+| /------------------------ H007
+| |
+| /----------22 /------------ H012
+| | \----------21
+\-----------------------------------23 \------------ H011
+ |
+ \------------------------------------ H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_20 --> node_18 9 1 0.500 1 --> 2
+ 10 1 1.000 1 ==> 2
+ node_18 --> node_17 6 1 0.500 1 ==> 2
+ 7 1 0.500 1 ==> 2
+ 8 1 1.000 1 ==> 2
+ node_17 --> node_16 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_20 --> node_19 11 1 0.500 2 ==> 1
+ node_19 --> H008 9 1 0.500 1 --> 2
+ node_23 --> node_22 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_22 --> H007 12 1 0.333 2 --> 1
+ node_21 --> H012 11 1 0.500 2 ==> 1
+ node_23 --> H009 12 1 0.333 2 --> 1
+
+Tree number 79 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #79 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 23 0 0 0
+ 22 23 0 0 1
+ 19 22 1 1 1
+ 18 19 1 1 2
+ 17 18 3 3 3
+ 16 17 2 2 2
+H010 (2) 16 1 1 1
+H013 (6) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H001 (7) 17 0 0 0
+H014 (5) 18 0 0 0
+H008 (4) 19 1 0 1
+ 21 22 2 2 2
+ 20 21 0 0 1
+H007 (3) 20 1 1 1
+H011 (13) 20 0 0 0
+H012 (10) 21 1 0 1
+H006 (12) 22 1 0 1
+H009 (11) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /--------------------- H010
+| |
+| +--------------------- H013
+| |
+| /--------16 /---------- H003
+| | +---------15
+| | | \---------- H005
+| /---------17 |
+| | | \--------------------- H000
+| | |
+| /--------18 \------------------------------- H001
+23 | |
+| /---------19 \------------------------------------------ H014
+| | |
+| | \---------------------------------------------------- H008
+| |
+| | /---------- H007
++--------22 /---------20
+| | | \---------- H011
+| +----------------------------------------21
+| | \--------------------- H012
+| |
+| \--------------------------------------------------------------- H006
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_19 9 1 1.000 1 ==> 2
+ node_19 --> node_18 10 1 1.000 1 ==> 2
+ node_18 --> node_17 6 1 0.500 1 ==> 2
+ 7 1 0.500 1 ==> 2
+ 8 1 1.000 1 ==> 2
+ node_17 --> node_16 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_19 --> H008 11 1 0.333 2 --> 1
+ node_22 --> node_21 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_20 --> H007 12 1 0.333 2 ==> 1
+ node_21 --> H012 11 1 0.333 2 --> 1
+ node_22 --> H006 11 1 0.333 2 --> 1
+ node_23 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 80 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #80 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 24 0 0 0
+ 23 24 0 0 1
+ 18 23 2 1 2
+ 17 18 3 3 3
+ 16 17 2 2 2
+H010 (2) 16 1 1 1
+H013 (6) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H001 (7) 17 0 0 0
+H014 (5) 18 0 0 0
+ 22 23 1 1 1
+ 21 22 0 0 1
+ 20 21 2 2 2
+ 19 20 1 1 1
+H007 (3) 19 1 1 1
+H011 (13) 19 0 0 0
+H012 (10) 20 0 0 0
+H006 (12) 21 0 0 0
+H008 (4) 22 1 0 1
+H009 (11) 24 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------------ H010
+| |
+| +------------------------ H013
+| |
+| /----------16 /------------ H003
+| | +----------15
+| | | \------------ H005
+| /-----------17 |
+| | | \------------------------ H000
+| | |
+| /----------18 \------------------------------------ H001
+24 | |
+| | \------------------------------------------------- H014
+| |
+| | /------------ H007
+| | /----------19
++----------23 | \------------ H011
+| | /----------20
+| | | \------------------------ H012
+| | /-----------21
+| | | \------------------------------------ H006
+| \----------22
+| \------------------------------------------------- H008
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_18 9 1 0.500 1 --> 2
+ 10 1 1.000 1 ==> 2
+ node_18 --> node_17 6 1 0.500 1 ==> 2
+ 7 1 0.500 1 ==> 2
+ 8 1 1.000 1 ==> 2
+ node_17 --> node_16 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_23 --> node_22 11 1 0.500 2 ==> 1
+ node_21 --> node_20 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_20 --> node_19 11 1 0.500 1 ==> 2
+ node_19 --> H007 12 1 0.333 2 ==> 1
+ node_22 --> H008 9 1 0.500 1 --> 2
+ node_24 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 81 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #81 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 23 0 0 0
+ 18 23 2 2 2
+ 17 18 3 3 3
+ 16 17 2 2 2
+H010 (2) 16 1 1 1
+H013 (6) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H001 (7) 17 0 0 0
+H014 (5) 18 0 0 0
+ 22 23 0 0 1
+ 20 22 2 2 2
+ 19 20 0 0 1
+H007 (3) 19 1 1 1
+H011 (13) 19 0 0 0
+H012 (10) 20 1 0 1
+ 21 22 1 0 1
+H008 (4) 21 1 1 1
+H006 (12) 21 0 0 0
+H009 (11) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /----------------------------- H010
+| |
+| +----------------------------- H013
+| |
+| /-------------16 /--------------- H003
+| | +------------15
+| | | \--------------- H005
+| /------------17 |
+| | | \----------------------------- H000
+| | |
++-------------18 \-------------------------------------------- H001
+23 |
+| \---------------------------------------------------------- H014
+|
+| /--------------- H007
+| /------------19
+| | \--------------- H011
+| /-------------20
+| | \----------------------------- H012
++---------------------------22
+| | /--------------- H008
+| \---------------------------21
+| \--------------- H006
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_18 9 1 0.500 1 ==> 2
+ 10 1 1.000 1 ==> 2
+ node_18 --> node_17 6 1 0.500 1 ==> 2
+ 7 1 0.500 1 ==> 2
+ 8 1 1.000 1 ==> 2
+ node_17 --> node_16 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_22 --> node_20 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_19 --> H007 12 1 0.333 2 ==> 1
+ node_20 --> H012 11 1 0.500 2 --> 1
+ node_22 --> node_21 11 1 0.500 2 --> 1
+ node_21 --> H008 9 1 0.500 1 ==> 2
+ node_23 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 82 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #82 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 25 0 0 0
+ 21 25 0 0 1
+ 19 21 2 1 2
+ 18 19 1 1 3
+ 17 18 2 2 2
+ 16 17 2 0 2
+H010 (2) 16 1 1 1
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H013 (6) 17 0 0 2
+H001 (7) 18 2 0 2
+H014 (5) 19 0 0 0
+ 20 21 1 1 1
+H008 (4) 20 1 0 1
+H006 (12) 20 0 0 1
+ 24 25 0 0 1
+ 23 24 2 2 2
+H007 (3) 23 1 0 1
+ 22 23 0 0 1
+H012 (10) 22 1 1 1
+H011 (13) 22 0 0 0
+H009 (11) 24 1 0 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /--------------------- H010
+| |
+| | /---------- H003
+| /--------16---------15
+| | | \---------- H005
+| | |
+| /---------17 \--------------------- H000
+| | |
+| /--------18 \------------------------------- H013
+| | |
+25 /---------19 \------------------------------------------ H001
+| | |
+| | \---------------------------------------------------- H014
++--------21
+| | /---------- H008
+| \---------------------------------------------------20
+| \---------- H006
+|
+| /--------------------- H007
+| |
+| /--------23 /---------- H012
+| | \---------22
+\----------------------------------------24 \---------- H011
+ |
+ \------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_19 9 1 0.500 1 --> 2
+ 10 1 1.000 1 ==> 2
+ node_19 --> node_18 8 1 1.000 1 ==> 2
+ node_18 --> node_17 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_17 --> node_16 6 1 0.500 1 --> 2
+ 7 1 0.500 1 --> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_18 --> H001 6 1 0.500 1 --> 2
+ 7 1 0.500 1 --> 2
+ node_21 --> node_20 11 1 0.500 2 ==> 1
+ node_20 --> H008 9 1 0.500 1 --> 2
+ node_24 --> node_23 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_23 --> H007 12 1 0.333 2 --> 1
+ node_22 --> H012 11 1 0.500 2 ==> 1
+ node_24 --> H009 12 1 0.333 2 --> 1
+
+Tree number 83 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #83 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 23 0 0 0
+ 18 23 2 2 2
+ 17 18 3 3 3
+ 16 17 2 2 2
+H010 (2) 16 1 1 1
+H013 (6) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H001 (7) 17 0 0 0
+H014 (5) 18 0 0 0
+ 21 23 0 0 1
+ 20 21 2 2 2
+H007 (3) 20 1 0 1
+ 19 20 0 0 1
+H012 (10) 19 1 1 1
+H011 (13) 19 0 0 0
+H009 (11) 21 1 0 1
+ 22 23 1 1 1
+H008 (4) 22 1 1 1
+H006 (12) 22 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /----------------------------- H010
+| |
+| +----------------------------- H013
+| |
+| /-------------16 /--------------- H003
+| | +------------15
+| | | \--------------- H005
+| /------------17 |
+| | | \----------------------------- H000
+| | |
++-------------18 \-------------------------------------------- H001
+23 |
+| \---------------------------------------------------------- H014
+|
+| /----------------------------- H007
+| |
+| /-------------20 /--------------- H012
+| | \------------19
++---------------------------21 \--------------- H011
+| |
+| \-------------------------------------------- H009
+|
+| /--------------- H008
+\--------------------------------------------------------22
+ \--------------- H006
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_18 9 1 0.500 1 ==> 2
+ 10 1 1.000 1 ==> 2
+ node_18 --> node_17 6 1 0.500 1 ==> 2
+ 7 1 0.500 1 ==> 2
+ 8 1 1.000 1 ==> 2
+ node_17 --> node_16 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_21 --> node_20 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_20 --> H007 12 1 0.333 2 --> 1
+ node_19 --> H012 11 1 0.500 2 ==> 1
+ node_21 --> H009 12 1 0.333 2 --> 1
+ node_23 --> node_22 11 1 0.500 2 ==> 1
+ node_22 --> H008 9 1 0.500 1 ==> 2
+
+Tree number 84 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #84 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 23 0 0 0
+ 19 23 2 2 2
+ 18 19 1 1 3
+ 17 18 2 2 2
+ 16 17 2 0 2
+H010 (2) 16 1 1 1
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H013 (6) 17 0 0 2
+H001 (7) 18 2 0 2
+H014 (5) 19 0 0 0
+ 22 23 1 1 1
+ 21 22 2 2 2
+ 20 21 1 1 1
+H007 (3) 20 1 1 1
+H011 (13) 20 0 0 0
+H012 (10) 21 0 0 0
+H008 (4) 22 1 1 1
+H006 (12) 22 0 0 0
+H009 (11) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------------ H010
+| |
+| | /------------ H003
+| /----------16----------15
+| | | \------------ H005
+| | |
+| /-----------17 \------------------------ H000
+| | |
+| /----------18 \------------------------------------ H013
+| | |
++----------19 \------------------------------------------------- H001
+23 |
+| \------------------------------------------------------------- H014
+|
+| /------------ H007
+| /----------20
+| | \------------ H011
+| /----------21
+| | \------------------------ H012
+| |
++-----------------------------------22------------------------------------ H008
+| |
+| \------------------------------------ H006
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_19 9 1 0.500 1 ==> 2
+ 10 1 1.000 1 ==> 2
+ node_19 --> node_18 8 1 1.000 1 ==> 2
+ node_18 --> node_17 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_17 --> node_16 6 1 0.500 1 --> 2
+ 7 1 0.500 1 --> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_18 --> H001 6 1 0.500 1 --> 2
+ 7 1 0.500 1 --> 2
+ node_23 --> node_22 11 1 0.500 2 ==> 1
+ node_22 --> node_21 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_21 --> node_20 11 1 0.500 1 ==> 2
+ node_20 --> H007 12 1 0.333 2 ==> 1
+ node_22 --> H008 9 1 0.500 1 ==> 2
+ node_23 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 85 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #85 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 22 0 0 0
+ 18 22 2 2 2
+ 17 18 3 3 3
+ 16 17 2 2 2
+H010 (2) 16 1 1 1
+H013 (6) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H001 (7) 17 0 0 0
+H014 (5) 18 0 0 0
+ 21 22 1 1 1
+ 20 21 2 2 2
+ 19 20 1 1 1
+H007 (3) 19 1 1 1
+H011 (13) 19 0 0 0
+H012 (10) 20 0 0 0
+H008 (4) 21 1 1 1
+H006 (12) 21 0 0 0
+H009 (11) 22 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /----------------------------- H010
+| |
+| +----------------------------- H013
+| |
+| /-------------16 /--------------- H003
+| | +------------15
+| | | \--------------- H005
+| /------------17 |
+| | | \----------------------------- H000
+| | |
++-------------18 \-------------------------------------------- H001
+22 |
+| \---------------------------------------------------------- H014
+|
+| /--------------- H007
+| /------------19
+| | \--------------- H011
+| /-------------20
+| | \----------------------------- H012
+| |
++---------------------------21-------------------------------------------- H008
+| |
+| \-------------------------------------------- H006
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_18 9 1 0.500 1 ==> 2
+ 10 1 1.000 1 ==> 2
+ node_18 --> node_17 6 1 0.500 1 ==> 2
+ 7 1 0.500 1 ==> 2
+ 8 1 1.000 1 ==> 2
+ node_17 --> node_16 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_22 --> node_21 11 1 0.500 2 ==> 1
+ node_21 --> node_20 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_20 --> node_19 11 1 0.500 1 ==> 2
+ node_19 --> H007 12 1 0.333 2 ==> 1
+ node_21 --> H008 9 1 0.500 1 ==> 2
+ node_22 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 86 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #86 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 24 0 0 0
+ 19 24 2 2 2
+ 18 19 1 1 3
+ 17 18 2 2 2
+ 16 17 2 0 2
+H010 (2) 16 1 1 1
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H013 (6) 17 0 0 2
+H001 (7) 18 2 0 2
+H014 (5) 19 0 0 0
+ 22 24 0 0 1
+ 21 22 2 2 2
+H007 (3) 21 1 0 1
+ 20 21 0 0 1
+H012 (10) 20 1 1 1
+H011 (13) 20 0 0 0
+H009 (11) 22 1 0 1
+ 23 24 1 1 1
+H008 (4) 23 1 1 1
+H006 (12) 23 0 0 0
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------------ H010
+| |
+| | /------------ H003
+| /----------16----------15
+| | | \------------ H005
+| | |
+| /-----------17 \------------------------ H000
+| | |
+| /----------18 \------------------------------------ H013
+| | |
++----------19 \------------------------------------------------- H001
+24 |
+| \------------------------------------------------------------- H014
+|
+| /------------------------ H007
+| |
+| /----------21 /------------ H012
+| | \----------20
++-----------------------------------22 \------------ H011
+| |
+| \------------------------------------ H009
+|
+| /------------ H008
+\-----------------------------------------------------------23
+ \------------ H006
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_24 --> node_19 9 1 0.500 1 ==> 2
+ 10 1 1.000 1 ==> 2
+ node_19 --> node_18 8 1 1.000 1 ==> 2
+ node_18 --> node_17 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_17 --> node_16 6 1 0.500 1 --> 2
+ 7 1 0.500 1 --> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_18 --> H001 6 1 0.500 1 --> 2
+ 7 1 0.500 1 --> 2
+ node_22 --> node_21 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_21 --> H007 12 1 0.333 2 --> 1
+ node_20 --> H012 11 1 0.500 2 ==> 1
+ node_22 --> H009 12 1 0.333 2 --> 1
+ node_24 --> node_23 11 1 0.500 2 ==> 1
+ node_23 --> H008 9 1 0.500 1 ==> 2
+
+Tree number 87 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #87 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 24 0 0 0
+ 19 24 2 2 2
+ 18 19 1 1 3
+ 17 18 2 2 2
+ 16 17 2 0 2
+H010 (2) 16 1 1 1
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H013 (6) 17 0 0 2
+H001 (7) 18 2 0 2
+H014 (5) 19 0 0 0
+ 23 24 0 0 1
+ 21 23 2 2 2
+ 20 21 0 0 1
+H007 (3) 20 1 1 1
+H011 (13) 20 0 0 0
+H012 (10) 21 1 0 1
+ 22 23 1 0 1
+H008 (4) 22 1 1 1
+H006 (12) 22 0 0 0
+H009 (11) 24 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------------ H010
+| |
+| | /------------ H003
+| /----------16----------15
+| | | \------------ H005
+| | |
+| /-----------17 \------------------------ H000
+| | |
+| /----------18 \------------------------------------ H013
+| | |
++----------19 \------------------------------------------------- H001
+24 |
+| \------------------------------------------------------------- H014
+|
+| /------------ H007
+| /----------20
+| | \------------ H011
+| /----------21
+| | \------------------------ H012
++-----------------------------------23
+| | /------------ H008
+| \----------------------22
+| \------------ H006
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_24 --> node_19 9 1 0.500 1 ==> 2
+ 10 1 1.000 1 ==> 2
+ node_19 --> node_18 8 1 1.000 1 ==> 2
+ node_18 --> node_17 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_17 --> node_16 6 1 0.500 1 --> 2
+ 7 1 0.500 1 --> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_18 --> H001 6 1 0.500 1 --> 2
+ 7 1 0.500 1 --> 2
+ node_23 --> node_21 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_20 --> H007 12 1 0.333 2 ==> 1
+ node_21 --> H012 11 1 0.500 2 --> 1
+ node_23 --> node_22 11 1 0.500 2 --> 1
+ node_22 --> H008 9 1 0.500 1 ==> 2
+ node_24 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 88 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #88 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 24 0 0 0
+ 23 24 0 0 1
+ 20 23 1 1 1
+ 19 20 1 1 2
+ 18 19 1 1 3
+ 17 18 2 2 2
+ 16 17 2 0 2
+H010 (2) 16 1 1 1
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H013 (6) 17 0 0 2
+H001 (7) 18 2 0 2
+H014 (5) 19 0 0 0
+H008 (4) 20 1 0 1
+ 22 23 2 2 2
+ 21 22 0 0 1
+H007 (3) 21 1 1 1
+H011 (13) 21 0 0 0
+H012 (10) 22 1 0 1
+H006 (12) 23 1 0 1
+H009 (11) 24 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------ H010
+| |
+| | /--------- H003
+| /-------16-------15
+| | | \--------- H005
+| | |
+| /--------17 \------------------ H000
+| | |
+| /-------18 \--------------------------- H013
+| | |
+| /-------19 \------------------------------------- H001
+24 | |
+| /-------20 \---------------------------------------------- H014
+| | |
+| | \------------------------------------------------------- H008
+| |
+| | /--------- H007
++-------23 /-------21
+| | | \--------- H011
+| +--------------------------------------------22
+| | \------------------ H012
+| |
+| \---------------------------------------------------------------- H006
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_20 9 1 1.000 1 ==> 2
+ node_20 --> node_19 10 1 1.000 1 ==> 2
+ node_19 --> node_18 8 1 1.000 1 ==> 2
+ node_18 --> node_17 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_17 --> node_16 6 1 0.500 1 --> 2
+ 7 1 0.500 1 --> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_18 --> H001 6 1 0.500 1 --> 2
+ 7 1 0.500 1 --> 2
+ node_20 --> H008 11 1 0.333 2 --> 1
+ node_23 --> node_22 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_21 --> H007 12 1 0.333 2 ==> 1
+ node_22 --> H012 11 1 0.333 2 --> 1
+ node_23 --> H006 11 1 0.333 2 --> 1
+ node_24 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 89 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #89 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 25 0 0 0
+ 24 25 0 0 1
+ 19 24 2 1 2
+ 18 19 1 1 3
+ 17 18 2 2 2
+ 16 17 2 0 2
+H010 (2) 16 1 1 1
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H013 (6) 17 0 0 2
+H001 (7) 18 2 0 2
+H014 (5) 19 0 0 0
+ 23 24 1 1 1
+ 22 23 0 0 1
+ 21 22 2 2 2
+ 20 21 1 1 1
+H007 (3) 20 1 1 1
+H011 (13) 20 0 0 0
+H012 (10) 21 0 0 0
+H006 (12) 22 0 0 0
+H008 (4) 23 1 0 1
+H009 (11) 25 1 1 1
+-------------------------------------------------------------------------
+Sum 20
+
+Tree length = 20
+Consistency index (CI) = 0.6000
+Homoplasy index (HI) = 0.4000
+CI excluding uninformative characters = 0.5556
+HI excluding uninformative characters = 0.4444
+Retention index (RI) = 0.7949
+Rescaled consistency index (RC) = 0.4769
+
+/------------------------------------------------------------------------- H002
+|
+| /--------------------- H010
+| |
+| | /---------- H003
+| /--------16---------15
+| | | \---------- H005
+| | |
+| /---------17 \--------------------- H000
+| | |
+| /--------18 \------------------------------- H013
+| | |
+| /---------19 \------------------------------------------ H001
+25 | |
+| | \---------------------------------------------------- H014
+| |
+| | /---------- H007
+| | /---------20
++--------24 | \---------- H011
+| | /--------21
+| | | \--------------------- H012
+| | /---------22
+| | | \------------------------------- H006
+| \-------------------23
+| \------------------------------------------ H008
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_24 --> node_19 9 1 0.500 1 --> 2
+ 10 1 1.000 1 ==> 2
+ node_19 --> node_18 8 1 1.000 1 ==> 2
+ node_18 --> node_17 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_17 --> node_16 6 1 0.500 1 --> 2
+ 7 1 0.500 1 --> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_18 --> H001 6 1 0.500 1 --> 2
+ 7 1 0.500 1 --> 2
+ node_24 --> node_23 11 1 0.500 2 ==> 1
+ node_22 --> node_21 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_21 --> node_20 11 1 0.500 1 ==> 2
+ node_20 --> H007 12 1 0.333 2 ==> 1
+ node_23 --> H008 9 1 0.500 1 --> 2
+ node_25 --> H009 12 1 0.333 2 ==> 1
diff --git a/trunk/test/paup/unrooted_present/association/test.tree b/trunk/test/paup/unrooted_present/association/test.tree
new file mode 100644
index 0000000000000000000000000000000000000000..9720b60dcdd0751ca9a293e166ca98754459c313
--- /dev/null
+++ b/trunk/test/paup/unrooted_present/association/test.tree
@@ -0,0 +1,120 @@
+#NEXUS
+
+Begin trees; [Treefile saved Tue Jan 10 20:35:47 2006]
+[!
+>Data file = /home/cbardel/recherche/logiciel/altree/test/paup/non_enracine_present/association/caco.paup
+>Heuristic search settings:
+> Optimality criterion = parsimony
+> Character-status summary:
+> Of 12 total characters:
+> All characters are of type 'unord'
+> All characters have equal weight
+> 2 characters are parsimony-uninformative
+> Number of parsimony-informative characters = 10
+> Starting tree(s) obtained via stepwise addition
+> Addition sequence: simple (reference taxon = H002)
+> Number of trees held at each step during stepwise addition = 1
+> Branch-swapping algorithm: tree-bisection-reconnection (TBR)
+> Steepest descent option not in effect
+> 'MaxTrees' setting = 2000 (will not be increased)
+> Branches collapsed (creating polytomies) if maximum branch length is zero
+> 'MulTrees' option in effect
+> Topological constraints not enforced
+> Trees are unrooted
+>
+>Heuristic search completed
+> Total number of rearrangements tried = 90406
+> Score of best tree(s) found = 20
+> Number of trees retained = 89
+> Time used = 1 sec (CPU time = 0.12 sec)
+]
+tree PAUP_1 = [&U] (H002,((((H010,H001,(H003,H005),H000),H013),H007,H012,H011),(H008,H014),H009,H006));
+tree PAUP_2 = [&U] (H002,((((((H010,(H003,H005),H000),H001),H013),H014),H008),(H007,H012,H011),H009,H006));
+tree PAUP_3 = [&U] (H002,((((H010,H001,(H003,H005),H000),H013),H007,H012,H011),((H008,H014),H006),H009));
+tree PAUP_4 = [&U] (H002,((((((H010,H001,(H003,H005),H000),H013),H007,H011),H012),(H008,H014),H006),H009));
+tree PAUP_5 = [&U] (H002,((((((H010,H001,(H003,H005),H000),H013),H007,H011),H012),((H008,H014),H006)),H009));
+tree PAUP_6 = [&U] (H002,(((((H010,H001,(H003,H005),H000),H013),(H007,H012,H011)),(H008,H014)),H009,H006));
+tree PAUP_7 = [&U] (H002,(((((H010,H001,(H003,H005),H000),H013),(H007,H012,H011)),H008,H014),H009,H006));
+tree PAUP_8 = [&U] (H002,(((((((H010,H001,(H003,H005),H000),H013),(H007,H012,H011)),H014),H008),H006),H009));
+tree PAUP_9 = [&U] (H002,((((((H010,H001,(H003,H005),H000),H013),H012,H011),H007),H009),((H008,H014),H006)));
+tree PAUP_10 = [&U] (H002,((((H010,H001,(H003,H005),H000),H013),H007,H012,H011),((H008,H006),H014),H009));
+tree PAUP_11 = [&U] (H002,(((((((H010,H001,(H003,H005),H000),H013),H007,H011),H012),H006),(H008,H014)),H009));
+tree PAUP_12 = [&U] (H002,((((H010,H001,(H003,H005),H000),H013),H007,H012,H011),(H008,H006),H014,H009));
+tree PAUP_13 = [&U] (H002,((((((H010,(H003,H005),H000),H013),H001),H014),H008),(H007,H012,H011),H009,H006));
+tree PAUP_14 = [&U] (H002,(((((H010,H013,(H003,H005),H000),H001),H014),H008),(H007,H012,H011),H009,H006));
+tree PAUP_15 = [&U] (H002,(((((H010,H001,(H003,H005),H000),H013),H014),H008),(H007,H012,H011),H009,H006));
+tree PAUP_16 = [&U] (H002,(((((H010,(H003,H005),H000),H001),H013),H014),(H007,H012,H011),(H008,H006),H009));
+tree PAUP_17 = [&U] (H002,((((((H010,(H003,H005),H000),H001),H013),H014),H008),(((H007,H011),H012),H006),H009));
+tree PAUP_18 = [&U] (H002,((((((H010,H001,(H003,H005),H000),H013),(H007,H012,H011)),H014),H008),H009,H006));
+tree PAUP_19 = [&U] (H002,((((((H010,(H003,H005),H000),H001),H013),H014),H008),((H007,(H012,H011)),H009),H006));
+tree PAUP_20 = [&U] (H002,(((((((H010,(H003,H005),H000),H001),H013),H014),H008),((H007,H011),H012),H006),H009));
+tree PAUP_21 = [&U] (H002,(((((((H010,(H003,H005),H000),H001),H013),H014),H008),H006),(H007,H012,H011),H009));
+tree PAUP_22 = [&U] (H002,((((((H010,(H003,H005),H000),H001),H013),H014),(H008,H006)),(H007,H012,H011),H009));
+tree PAUP_23 = [&U] (H002,((((((((H010,(H003,H005),H000),H001),H013),H014),H008),H006),((H007,H011),H012)),H009));
+tree PAUP_24 = [&U] (H002,((((((H010,H001,(H003,H005),H000),H013),H014),H008),H006),(H007,H012,H011),H009));
+tree PAUP_25 = [&U] (H002,(((((H010,H001,(H003,H005),H000),H013),(H007,H012,H011)),((H008,H006),H014)),H009));
+tree PAUP_26 = [&U] (H002,(((((H010,H001,(H003,H005),H000),H013),(H007,H012,H011)),H014),(H008,H006),H009));
+tree PAUP_27 = [&U] (H002,(((((H010,H001,(H003,H005),H000),H013),H014),(H007,H012,H011)),(H008,H006),H009));
+tree PAUP_28 = [&U] (H002,((((((H010,H013,(H003,H005),H000),H001),H014),H008),H006),(H007,H012,H011),H009));
+tree PAUP_29 = [&U] (H002,((((((((H010,H001,(H003,H005),H000),H013),H007,H011),H012),H006),H008),H014),H009));
+tree PAUP_30 = [&U] (H002,((((((H010,H001,(H003,H005),H000),H013),H007,H011),H012),H006),(H008,H014),H009));
+tree PAUP_31 = [&U] (H002,((((((H010,H001,(H003,H005),H000),H013),H007,H011),H012),(H008,H006)),H014,H009));
+tree PAUP_32 = [&U] (H002,(((((((H010,H001,(H003,H005),H000),H013),H014),H007,H011),H012),(H008,H006)),H009));
+tree PAUP_33 = [&U] (H002,(((((((H010,H001,(H003,H005),H000),H013),H014),H008),H006),((H007,H011),H012)),H009));
+tree PAUP_34 = [&U] (H002,(((((((H010,H013,(H003,H005),H000),H001),H014),H008),H006),((H007,H011),H012)),H009));
+tree PAUP_35 = [&U] (H002,((((((H010,H001,(H003,H005),H000),H013),H012,H011),H007),H009),(H008,H014),H006));
+tree PAUP_36 = [&U] (H002,(((((H010,H001,(H003,H005),H000),H013),(H007,H012,H011)),(H008,H006),H014),H009));
+tree PAUP_37 = [&U] (H002,(((((H010,H001,(H003,H005),H000),H013),H014),H007,H012,H011),(H008,H006),H009));
+tree PAUP_38 = [&U] (H002,(((((((H010,H001,(H003,H005),H000),H013),H014),H007,H011),H012),H008,H006),H009));
+tree PAUP_39 = [&U] (H002,(((((((H010,H001,(H003,H005),H000),H013),H014),H012,H011),H007),H009),(H008,H006)));
+tree PAUP_40 = [&U] (H002,((((((H010,H001,(H003,H005),H000),H013),H014),H008),((H007,H011),H012),H006),H009));
+tree PAUP_41 = [&U] (H002,((((((H010,H001,(H003,H005),H000),H013),H014),H008),H006),((H007,(H012,H011)),H009)));
+tree PAUP_42 = [&U] (H002,((((((H010,H001,(H003,H005),H000),H013),H014),H008),(((H007,H011),H012),H006)),H009));
+tree PAUP_43 = [&U] (H002,((((((H010,H001,(H003,H005),H000),H013),(H007,H012,H011)),H014),(H008,H006)),H009));
+tree PAUP_44 = [&U] (H002,((((((H010,H001,(H003,H005),H000),H013),H012,H011),H007),H009),(H008,H006),H014));
+tree PAUP_45 = [&U] (H002,((((((H010,H001,(H003,H005),H000),H013),H012,H011),H007),H009),((H008,H006),H014)));
+tree PAUP_46 = [&U] (H002,((((((H010,H013,(H003,H005),H000),H001),H014),H008),H006),((H007,(H012,H011)),H009)));
+tree PAUP_47 = [&U] (H002,((((((H010,H001,(H003,H005),H000),H013),H007,H011),H012),H008,H006),H014,H009));
+tree PAUP_48 = [&U] (H002,(((((H010,H001,(H003,H005),H000),H013),H014),(H008,H006)),(H007,H012,H011),H009));
+tree PAUP_49 = [&U] (H002,(((((H010,H013,(H003,H005),H000),H001),H014),(H008,H006)),(H007,H012,H011),H009));
+tree PAUP_50 = [&U] (H002,((((((H010,H013,(H003,H005),H000),H001),H014),H008),(((H007,H011),H012),H006)),H009));
+tree PAUP_51 = [&U] (H002,((((((H010,(H003,H005),H000),H001),H013),H014),(H007,H012,H011)),(H008,H006),H009));
+tree PAUP_52 = [&U] (H002,(((((H010,(H003,H005),H000),H013),H001),H014),(H007,H012,H011),(H008,H006),H009));
+tree PAUP_53 = [&U] (H002,(((((((H010,(H003,H005),H000),H013),H001),H014),H008),H006),(H007,H012,H011),H009));
+tree PAUP_54 = [&U] (H002,(((((((H010,(H003,H005),H000),H013),H001),H014),H008),H006),((H007,(H012,H011)),H009)));
+tree PAUP_55 = [&U] (H002,((((((H010,(H003,H005),H000),H013),H001),H014),(H008,H006)),(H007,H012,H011),H009));
+tree PAUP_56 = [&U] (H002,((((((H010,(H003,H005),H000),H013),H001),H014),H008),((H007,(H012,H011)),H009),H006));
+tree PAUP_57 = [&U] (H002,((((((H010,(H003,H005),H000),H013),H001),H014),H008),(((H007,H011),H012),H006),H009));
+tree PAUP_58 = [&U] (H002,((((H010,H013,(H003,H005),H000),H001),H014),(H007,H012,H011),(H008,H006),H009));
+tree PAUP_59 = [&U] (H002,(((((H010,H013,(H003,H005),H000),H001),H014),H008),((H007,(H012,H011)),H009),H006));
+tree PAUP_60 = [&U] (H002,(((((H010,H013,(H003,H005),H000),H001),H014),H008),(((H007,H011),H012),H006),H009));
+tree PAUP_61 = [&U] (H002,((((H010,H001,(H003,H005),H000),H013),H014),(H007,H012,H011),(H008,H006),H009));
+tree PAUP_62 = [&U] (H002,(((((H010,H001,(H003,H005),H000),H013),H014),H008),((H007,(H012,H011)),H009),H006));
+tree PAUP_63 = [&U] (H002,(((((H010,H001,(H003,H005),H000),H013),H014),H008),(((H007,H011),H012),H006),H009));
+tree PAUP_64 = [&U] (H002,((((((H010,(H003,H005),H000),H001),H013),H014),(H008,H006)),((H007,(H012,H011)),H009)));
+tree PAUP_65 = [&U] (H002,(((((H010,(H003,H005),H000),H001),H013),H014),((H007,(H012,H011)),H009),(H008,H006)));
+tree PAUP_66 = [&U] (H002,(((((H010,(H003,H005),H000),H001),H013),H014),(((H007,H011),H012),H008,H006),H009));
+tree PAUP_67 = [&U] (H002,(((((H010,(H003,H005),H000),H001),H013),H014),(((H007,H011),H012),(H008,H006)),H009));
+tree PAUP_68 = [&U] (H002,(((((((H010,(H003,H005),H000),H001),H013),H014),H008),(((H007,H011),H012),H006)),H009));
+tree PAUP_69 = [&U] (H002,(((((((H010,(H003,H005),H000),H001),H013),H014),H008),H006),((H007,(H012,H011)),H009)));
+tree PAUP_70 = [&U] (H002,((((((H010,(H003,H005),H000),H001),H013),H014),((((H007,H011),H012),H006),H008)),H009));
+tree PAUP_71 = [&U] (H002,(((((((H010,(H003,H005),H000),H013),H001),H014),H008),(((H007,H011),H012),H006)),H009));
+tree PAUP_72 = [&U] (H002,((((((((H010,(H003,H005),H000),H013),H001),H014),H008),H006),((H007,H011),H012)),H009));
+tree PAUP_73 = [&U] (H002,((((H010,H001,(H003,H005),H000),H013),H014),((H007,(H012,H011)),H009),(H008,H006)));
+tree PAUP_74 = [&U] (H002,((((H010,H001,(H003,H005),H000),H013),H014),(((H007,H011),H012),(H008,H006)),H009));
+tree PAUP_75 = [&U] (H002,((((H010,H001,(H003,H005),H000),H013),H014),(((H007,H011),H012),H008,H006),H009));
+tree PAUP_76 = [&U] (H002,(((((H010,H001,(H003,H005),H000),H013),H014),((((H007,H011),H012),H006),H008)),H009));
+tree PAUP_77 = [&U] (H002,(((((H010,H001,(H003,H005),H000),H013),H014),(H008,H006)),((H007,(H012,H011)),H009)));
+tree PAUP_78 = [&U] (H002,(((((H010,H013,(H003,H005),H000),H001),H014),(H008,H006)),((H007,(H012,H011)),H009)));
+tree PAUP_79 = [&U] (H002,((((((H010,H013,(H003,H005),H000),H001),H014),H008),((H007,H011),H012),H006),H009));
+tree PAUP_80 = [&U] (H002,(((((H010,H013,(H003,H005),H000),H001),H014),((((H007,H011),H012),H006),H008)),H009));
+tree PAUP_81 = [&U] (H002,((((H010,H013,(H003,H005),H000),H001),H014),(((H007,H011),H012),(H008,H006)),H009));
+tree PAUP_82 = [&U] (H002,((((((H010,(H003,H005),H000),H013),H001),H014),(H008,H006)),((H007,(H012,H011)),H009)));
+tree PAUP_83 = [&U] (H002,((((H010,H013,(H003,H005),H000),H001),H014),((H007,(H012,H011)),H009),(H008,H006)));
+tree PAUP_84 = [&U] (H002,(((((H010,(H003,H005),H000),H013),H001),H014),(((H007,H011),H012),H008,H006),H009));
+tree PAUP_85 = [&U] (H002,((((H010,H013,(H003,H005),H000),H001),H014),(((H007,H011),H012),H008,H006),H009));
+tree PAUP_86 = [&U] (H002,(((((H010,(H003,H005),H000),H013),H001),H014),((H007,(H012,H011)),H009),(H008,H006)));
+tree PAUP_87 = [&U] (H002,(((((H010,(H003,H005),H000),H013),H001),H014),(((H007,H011),H012),(H008,H006)),H009));
+tree PAUP_88 = [&U] (H002,(((((((H010,(H003,H005),H000),H013),H001),H014),H008),((H007,H011),H012),H006),H009));
+tree PAUP_89 = [&U] (H002,((((((H010,(H003,H005),H000),H013),H001),H014),((((H007,H011),H012),H006),H008)),H009));
+End;
diff --git a/trunk/test/paup/unrooted_present/localisation/caco.loc b/trunk/test/paup/unrooted_present/localisation/caco.loc
new file mode 100644
index 0000000000000000000000000000000000000000..0737fef23436ec398cbaea5c97dec59ff54ba303
--- /dev/null
+++ b/trunk/test/paup/unrooted_present/localisation/caco.loc
@@ -0,0 +1,27 @@
+Localisation method using S-character
+
+Results:
+site number 12 sens 1-->2 V_i = 0.288675134594813
+site number 2 sens 1-->2 V_i = 0
+site number 6 sens 1-->2 V_i = 0
+site number 8 sens 1-->2 V_i = 0
+site number 4 sens 2-->1 V_i = 0
+site number 3 sens 2-->1 V_i = 0
+site number 1 sens 1-->2 V_i = 0
+site number 10 sens 1-->2 V_i = 0
+site number 7 sens 1-->2 V_i = 0
+site number 9 sens 1-->2 V_i = 0
+site number 5 sens 2-->1 V_i = 0
+site number 12 sens 2-->1 V_i = 0
+site number 10 sens 2-->1 V_i = -0.5
+site number 11 sens 2-->1 V_i = -0.5
+site number 11 sens 1-->2 V_i = -0.5
+site number 3 sens 1-->2 V_i = -0.5
+site number 4 sens 1-->2 V_i = -0.5
+site number 8 sens 2-->1 V_i = -0.5
+site number 5 sens 1-->2 V_i = -0.5
+site number 9 sens 2-->1 V_i = -0.707106781186547
+site number 6 sens 2-->1 V_i = -0.707106781186547
+site number 1 sens 2-->1 V_i = -0.707106781186547
+site number 7 sens 2-->1 V_i = -0.707106781186547
+site number 2 sens 2-->1 V_i = -0.707106781186547
diff --git a/trunk/test/paup/unrooted_present/localisation/caco.paup b/trunk/test/paup/unrooted_present/localisation/caco.paup
new file mode 100644
index 0000000000000000000000000000000000000000..333a45d010ebe952dd92c2fcbbf281e7c4c6be33
--- /dev/null
+++ b/trunk/test/paup/unrooted_present/localisation/caco.paup
@@ -0,0 +1,35 @@
+#Nexus
+Begin data;
+dimension ntax=14 nchar=12;
+format symbols="0123456789" missing=?;
+matrix
+H002 112221111122
+H010 222212222222
+H007 222221111121
+H008 112221112112
+H014 112221112222
+H013 222221122222
+H001 112222222222
+H003 221122222222
+H005 221222222221
+H012 222221111112
+H009 112221111121
+H006 112221111112
+H011 222221111122
+H000 222222222222
+;
+end;
+begin assumptions;
+end;
+begin paup;
+set nowarnreset autoclose maxtrees = 2000 increase= no [- Auto AutoInc = 100] monitor = no taxlabels = full warnroot=no opt=deltran [- acctran];
+hsearch;
+savetrees from=1 to=1000 file= test.tree root=no format=altnexus;
+cleartrees nowarn=yes;
+gettrees rooted=no file=test.tree;
+log file = test.res.log replace= yes [- no];
+describetrees all /plot=cladogram [- phylogram] brlens=yes apolist=yes;
+log stop;
+end;
+quit;
+[WARNING, this file is designed for bi-allelic data. If it is not the case, you may have to modify this input file, for example by specifying the ordered option in the typeset command in the assumption block]
diff --git a/trunk/test/paup/unrooted_present/localisation/et_caco.paup b/trunk/test/paup/unrooted_present/localisation/et_caco.paup
new file mode 100644
index 0000000000000000000000000000000000000000..20a16b6f4ecab9b1b48e507fb8d1544c43466e45
--- /dev/null
+++ b/trunk/test/paup/unrooted_present/localisation/et_caco.paup
@@ -0,0 +1,37 @@
+#Nexus
+Begin data;
+dimension ntax=14 nchar=13;
+format symbols="0123456789CG" missing=?;
+matrix
+H002 112221111122?
+H010 222212222222?
+H007 2222211111210
+H008 1122211121121
+H014 112221112222?
+H013 222221122222?
+H001 112222222222?
+H003 221122222222?
+H005 221222222221?
+H012 2222211111120
+H009 1122211111211
+H006 1122211111121
+H011 2222211111221
+H000 2222222222220
+;
+end;
+begin assumptions;
+end;
+begin paup;
+exclude 13;
+set nowarnreset autoclose maxtrees = 2000 increase= no [- Auto AutoInc = 100] monitor = no taxlabels = full warnroot=no opt=deltran [- acctran];
+hsearch;
+savetrees from=1 to=1000 file= test.tree root=no format=altnexus;
+cleartrees nowarn=yes;
+gettrees rooted=no file=test.tree;
+log file = test.res.log replace= yes [- no];
+include 13;
+describetrees all /plot=cladogram [- phylogram] brlens=yes apolist=yes;
+log stop;
+end;
+quit;
+[WARNING, this file is designed for bi-allelic data. If it is not the case, you may have to modify this input file, for example by specifying the ordered option in the typeset command in the assumption block]
diff --git a/trunk/test/paup/unrooted_present/localisation/nb_cas_control.txt b/trunk/test/paup/unrooted_present/localisation/nb_cas_control.txt
new file mode 100644
index 0000000000000000000000000000000000000000..40b340628a07d72243de522ba854df3e7a8b6d26
--- /dev/null
+++ b/trunk/test/paup/unrooted_present/localisation/nb_cas_control.txt
@@ -0,0 +1,14 @@
+H002 m008 c006
+H010 m007 c005
+H007 m007 c013
+H008 m009 c002
+H014 m004 c002
+H013 m002 c004
+H001 m011 c009
+H003 m005 c006
+H005 m007 c007
+H012 m001 c004
+H009 m008 c002
+H006 m028 c013
+H011 m005 c001
+H000 m098 c126
diff --git a/trunk/test/paup/unrooted_present/localisation/run-prog b/trunk/test/paup/unrooted_present/localisation/run-prog
new file mode 100755
index 0000000000000000000000000000000000000000..084bf8a2d9257c2307fb191d28eb2c17eda5bd13
--- /dev/null
+++ b/trunk/test/paup/unrooted_present/localisation/run-prog
@@ -0,0 +1,14 @@
+#!/bin/sh -x
+
+#To obtain the paup input file containing the character S
+../../../../altree-add-S -i caco.paup -j \
+nb_cas_control.txt -o et_caco.paup -e 1 -t SNP -p 0.5
+
+# To run paup
+paup et_caco.paup
+
+# To perform the localisation analysis on the 89 equiparsimonious trees
+../../../../altree -i test.res.log \
+-j nb_cas_control.txt -t SNP -p paup --tree-to-analyse 89 \
+--s-site-number 13 --s-site-characters "0->1" \
+--co-evo double -l -o caco.loc
diff --git a/trunk/test/paup/unrooted_present/localisation/test.res.log b/trunk/test/paup/unrooted_present/localisation/test.res.log
new file mode 100644
index 0000000000000000000000000000000000000000..a3aec6e242a6509d257f5f07e4504f62c97b2fbe
--- /dev/null
+++ b/trunk/test/paup/unrooted_present/localisation/test.res.log
@@ -0,0 +1,8629 @@
+
+P A U P *
+Portable version 4.0b10 for Unix
+Tue Jan 10 21:25:45 2006
+
+ -----------------------------NOTICE-----------------------------
+ This is a beta-test version. Please report any crashes,
+ apparent calculation errors, or other anomalous results.
+ There are no restrictions on publication of results obtained
+ with this version, but you should check the WWW site
+ frequently for bug announcements and/or updated versions.
+ See the README file on the distribution media for details.
+ ----------------------------------------------------------------
+
+Character-exclusion status changed:
+ 1 character re-included
+ Total number of characters now excluded = 0
+ Number of included characters = 13
+
+Tree description:
+
+ Unrooted tree(s) rooted using outgroup method
+ Optimality criterion = parsimony
+ Character-status summary:
+ Of 13 total characters:
+ All characters are of type 'unord'
+ All characters have equal weight
+ 2 characters are parsimony-uninformative
+ Number of parsimony-informative characters = 11
+ Character-state optimization: Delayed transformation (DELTRAN)
+
+Tree number 1 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #1 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 20 0 0 0
+ 18 20 3 3 3
+ 17 18 3 3 3
+ 16 17 2 2 2
+H010 (2) 16 1 1 1
+H001 (7) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H013 (6) 17 0 0 0
+H007 (3) 18 1 1 1
+H012 (10) 18 1 1 1
+H011 (13) 18 1 1 1
+ 19 20 1 1 1
+H008 (4) 19 1 1 1
+H014 (5) 19 1 1 1
+H009 (11) 20 1 1 1
+H006 (12) 20 1 1 1
+-------------------------------------------------------------------------
+Sum 22
+
+Tree length = 22
+Consistency index (CI) = 0.5909
+Homoplasy index (HI) = 0.4091
+CI excluding uninformative characters = 0.5500
+HI excluding uninformative characters = 0.4500
+Retention index (RI) = 0.7805
+Rescaled consistency index (RC) = 0.4612
+
+/------------------------------------------------------------------------- H002
+|
+| /----------------------------- H010
+| |
+| +----------------------------- H001
+| |
+| /-------------16 /--------------- H003
+| | +------------15
+| | | \--------------- H005
+| /------------17 |
+| | | \----------------------------- H000
+| | |
+| | \-------------------------------------------- H013
+20 |
++-------------18---------------------------------------------------------- H007
+| |
+| +---------------------------------------------------------- H012
+| |
+| \---------------------------------------------------------- H011
+|
+| /--------------- H008
++--------------------------------------------------------19
+| \--------------- H014
+|
++------------------------------------------------------------------------- H009
+|
+\------------------------------------------------------------------------- H006
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_20 --> node_18 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ 13 1 0.500 1 ==> 0
+ node_18 --> node_17 8 1 1.000 1 ==> 2
+ 9 1 0.500 1 ==> 2
+ 10 1 0.500 1 ==> 2
+ node_17 --> node_16 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_18 --> H007 12 1 0.333 2 ==> 1
+ node_18 --> H012 11 1 0.333 2 ==> 1
+ node_18 --> H011 13 1 0.500 0 ==> 1
+ node_20 --> node_19 9 1 0.500 1 ==> 2
+ node_19 --> H008 11 1 0.333 2 ==> 1
+ node_19 --> H014 10 1 0.500 1 ==> 2
+ node_20 --> H009 12 1 0.333 2 ==> 1
+ node_20 --> H006 11 1 0.333 2 ==> 1
+
+Tree number 2 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #2 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 22 0 0 0
+ 20 22 1 1 1
+ 19 20 1 1 2
+ 18 19 1 1 4
+ 17 18 2 2 3
+ 16 17 2 0 3
+H010 (2) 16 1 1 1
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 1 0 1
+H001 (7) 17 0 0 2
+H013 (6) 18 2 0 2
+H014 (5) 19 0 0 0
+H008 (4) 20 1 1 1
+ 21 22 2 2 3
+H007 (3) 21 2 1 2
+H012 (10) 21 2 1 2
+H011 (13) 21 0 0 1
+H009 (11) 22 1 1 1
+H006 (12) 22 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+/------------------------------------------------------------------------- H002
+|
+| /--------------------- H010
+| |
+| | /---------- H003
+| /--------16---------15
+| | | \---------- H005
+| | |
+| /---------17 \--------------------- H000
+| | |
+| /--------18 \------------------------------- H001
+| | |
+| /---------19 \------------------------------------------ H013
+22 | |
++--------20 \---------------------------------------------------- H014
+| |
+| \--------------------------------------------------------------- H008
+|
+| /---------- H007
+| |
++-------------------------------------------------------------21---------- H012
+| |
+| \---------- H011
+|
++------------------------------------------------------------------------- H009
+|
+\------------------------------------------------------------------------- H006
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_20 9 1 1.000 1 ==> 2
+ node_20 --> node_19 10 1 1.000 1 ==> 2
+ node_19 --> node_18 8 1 1.000 1 ==> 2
+ node_18 --> node_17 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_17 --> node_16 1 1 0.333 1 --> 2
+ 2 1 0.333 1 --> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_16 --> H000 13 1 0.333 1 --> 0
+ node_18 --> H013 1 1 0.333 1 --> 2
+ 2 1 0.333 1 --> 2
+ node_20 --> H008 11 1 0.333 2 ==> 1
+ node_22 --> node_21 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_21 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_21 --> H012 11 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_22 --> H009 12 1 0.333 2 ==> 1
+ node_22 --> H006 11 1 0.333 2 ==> 1
+
+Tree number 3 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #3 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 21 0 0 0
+ 18 21 3 3 3
+ 17 18 3 3 3
+ 16 17 2 2 2
+H010 (2) 16 1 1 1
+H001 (7) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H013 (6) 17 0 0 0
+H007 (3) 18 1 1 1
+H012 (10) 18 1 1 1
+H011 (13) 18 1 1 1
+ 20 21 0 0 1
+ 19 20 1 1 1
+H008 (4) 19 1 0 1
+H014 (5) 19 1 1 2
+H006 (12) 20 1 0 1
+H009 (11) 21 1 1 1
+-------------------------------------------------------------------------
+Sum 22
+
+Tree length = 22
+Consistency index (CI) = 0.5909
+Homoplasy index (HI) = 0.4091
+CI excluding uninformative characters = 0.5500
+HI excluding uninformative characters = 0.4500
+Retention index (RI) = 0.7805
+Rescaled consistency index (RC) = 0.4612
+
+/------------------------------------------------------------------------- H002
+|
+| /----------------------------- H010
+| |
+| +----------------------------- H001
+| |
+| /-------------16 /--------------- H003
+| | +------------15
+| | | \--------------- H005
+| /------------17 |
+| | | \----------------------------- H000
+| | |
+| | \-------------------------------------------- H013
+21 |
++-------------18---------------------------------------------------------- H007
+| |
+| +---------------------------------------------------------- H012
+| |
+| \---------------------------------------------------------- H011
+|
+| /--------------- H008
+| /------------19
+| | \--------------- H014
++------------------------------------------20
+| \----------------------------- H006
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_18 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ 13 1 0.500 1 ==> 0
+ node_18 --> node_17 8 1 1.000 1 ==> 2
+ 9 1 0.500 1 ==> 2
+ 10 1 0.500 1 ==> 2
+ node_17 --> node_16 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_18 --> H007 12 1 0.333 2 ==> 1
+ node_18 --> H012 11 1 0.333 2 ==> 1
+ node_18 --> H011 13 1 0.500 0 ==> 1
+ node_20 --> node_19 9 1 0.500 1 ==> 2
+ node_19 --> H008 11 1 0.333 2 --> 1
+ node_19 --> H014 10 1 0.500 1 ==> 2
+ node_20 --> H006 11 1 0.333 2 --> 1
+ node_21 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 4 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #4 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 22 0 0 0
+ 21 22 0 0 1
+ 19 21 3 3 3
+ 18 19 0 0 1
+ 17 18 3 3 3
+ 16 17 2 2 2
+H010 (2) 16 1 1 1
+H001 (7) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H013 (6) 17 0 0 0
+H007 (3) 18 1 1 1
+H011 (13) 18 1 1 1
+H012 (10) 19 1 0 1
+ 20 21 1 1 1
+H008 (4) 20 1 0 1
+H014 (5) 20 1 1 2
+H006 (12) 21 1 0 1
+H009 (11) 22 1 1 1
+-------------------------------------------------------------------------
+Sum 22
+
+Tree length = 22
+Consistency index (CI) = 0.5909
+Homoplasy index (HI) = 0.4091
+CI excluding uninformative characters = 0.5500
+HI excluding uninformative characters = 0.4500
+Retention index (RI) = 0.7805
+Rescaled consistency index (RC) = 0.4612
+
+/------------------------------------------------------------------------- H002
+|
+| /--------------------- H010
+| |
+| +--------------------- H001
+| |
+| /--------16 /---------- H003
+| | +---------15
+| | | \---------- H005
+| /---------17 |
+| | | \--------------------- H000
+| | |
+| | \------------------------------- H013
+22 /--------18
+| | +------------------------------------------ H007
+| | |
+| /---------19 \------------------------------------------ H011
+| | |
+| | \---------------------------------------------------- H012
+| |
++--------21 /---------- H008
+| +---------------------------------------------------20
+| | \---------- H014
+| |
+| \--------------------------------------------------------------- H006
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_19 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ 13 1 0.500 1 ==> 0
+ node_18 --> node_17 8 1 1.000 1 ==> 2
+ 9 1 0.500 1 ==> 2
+ 10 1 0.500 1 ==> 2
+ node_17 --> node_16 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_18 --> H007 12 1 0.333 2 ==> 1
+ node_18 --> H011 13 1 0.500 0 ==> 1
+ node_19 --> H012 11 1 0.333 2 --> 1
+ node_21 --> node_20 9 1 0.500 1 ==> 2
+ node_20 --> H008 11 1 0.333 2 --> 1
+ node_20 --> H014 10 1 0.500 1 ==> 2
+ node_21 --> H006 11 1 0.333 2 --> 1
+ node_22 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 5 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #5 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 23 0 0 0
+ 22 23 0 0 1
+ 19 22 3 3 3
+ 18 19 0 0 1
+ 17 18 3 3 3
+ 16 17 2 2 2
+H010 (2) 16 1 1 1
+H001 (7) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H013 (6) 17 0 0 0
+H007 (3) 18 1 1 1
+H011 (13) 18 1 1 1
+H012 (10) 19 1 0 1
+ 21 22 0 0 1
+ 20 21 1 1 1
+H008 (4) 20 1 0 1
+H014 (5) 20 1 1 2
+H006 (12) 21 1 0 1
+H009 (11) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 22
+
+Tree length = 22
+Consistency index (CI) = 0.5909
+Homoplasy index (HI) = 0.4091
+CI excluding uninformative characters = 0.5500
+HI excluding uninformative characters = 0.4500
+Retention index (RI) = 0.7805
+Rescaled consistency index (RC) = 0.4612
+
+/------------------------------------------------------------------------- H002
+|
+| /--------------------- H010
+| |
+| +--------------------- H001
+| |
+| /--------16 /---------- H003
+| | +---------15
+| | | \---------- H005
+| /---------17 |
+| | | \--------------------- H000
+| | |
+| | \------------------------------- H013
+23 /--------18
+| | +------------------------------------------ H007
+| | |
+| /---------19 \------------------------------------------ H011
+| | |
+| | \---------------------------------------------------- H012
+| |
++--------22 /---------- H008
+| | /---------20
+| | | \---------- H014
+| \----------------------------------------21
+| \--------------------- H006
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_19 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ 13 1 0.500 1 ==> 0
+ node_18 --> node_17 8 1 1.000 1 ==> 2
+ 9 1 0.500 1 ==> 2
+ 10 1 0.500 1 ==> 2
+ node_17 --> node_16 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_18 --> H007 12 1 0.333 2 ==> 1
+ node_18 --> H011 13 1 0.500 0 ==> 1
+ node_19 --> H012 11 1 0.333 2 --> 1
+ node_21 --> node_20 9 1 0.500 1 ==> 2
+ node_20 --> H008 11 1 0.333 2 --> 1
+ node_20 --> H014 10 1 0.500 1 ==> 2
+ node_21 --> H006 11 1 0.333 2 --> 1
+ node_23 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 6 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #6 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 22 0 0 0
+ 21 22 0 0 1
+ 19 21 3 3 3
+ 17 19 3 2 3
+ 16 17 2 2 2
+H010 (2) 16 1 1 1
+H001 (7) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H013 (6) 17 0 0 0
+ 18 19 0 0 1
+H007 (3) 18 1 1 1
+H012 (10) 18 1 1 1
+H011 (13) 18 1 1 1
+ 20 21 1 0 1
+H008 (4) 20 1 1 1
+H014 (5) 20 1 1 1
+H009 (11) 22 1 1 1
+H006 (12) 22 1 1 1
+-------------------------------------------------------------------------
+Sum 22
+
+Tree length = 22
+Consistency index (CI) = 0.5909
+Homoplasy index (HI) = 0.4091
+CI excluding uninformative characters = 0.5500
+HI excluding uninformative characters = 0.4500
+Retention index (RI) = 0.7805
+Rescaled consistency index (RC) = 0.4612
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------------ H010
+| |
+| +------------------------ H001
+| |
+| /----------16 /------------ H003
+| | +----------15
+| | | \------------ H005
+| /-----------17 |
+| | | \------------------------ H000
+| | |
+| | \------------------------------------ H013
+22 /----------19
+| | | /------------ H007
+| | | |
+| | \-----------------------------------18------------ H012
++----------21 |
+| | \------------ H011
+| |
+| | /------------ H008
+| \-----------------------------------------------20
+| \------------ H014
+|
++------------------------------------------------------------------------- H009
+|
+\------------------------------------------------------------------------- H006
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_19 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ 13 1 0.500 1 ==> 0
+ node_19 --> node_17 8 1 1.000 1 ==> 2
+ 9 1 0.500 1 --> 2
+ 10 1 0.500 1 ==> 2
+ node_17 --> node_16 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_18 --> H007 12 1 0.333 2 ==> 1
+ node_18 --> H012 11 1 0.333 2 ==> 1
+ node_18 --> H011 13 1 0.500 0 ==> 1
+ node_21 --> node_20 9 1 0.500 1 --> 2
+ node_20 --> H008 11 1 0.333 2 ==> 1
+ node_20 --> H014 10 1 0.500 1 ==> 2
+ node_22 --> H009 12 1 0.333 2 ==> 1
+ node_22 --> H006 11 1 0.333 2 ==> 1
+
+Tree number 7 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #7 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 21 0 0 0
+ 20 21 1 1 1
+ 19 20 3 3 3
+ 17 19 2 2 2
+ 16 17 2 2 2
+H010 (2) 16 1 1 1
+H001 (7) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H013 (6) 17 0 0 0
+ 18 19 1 1 1
+H007 (3) 18 1 1 1
+H012 (10) 18 1 1 1
+H011 (13) 18 1 1 1
+H008 (4) 20 1 1 1
+H014 (5) 20 1 1 1
+H009 (11) 21 1 1 1
+H006 (12) 21 1 1 1
+-------------------------------------------------------------------------
+Sum 22
+
+Tree length = 22
+Consistency index (CI) = 0.5909
+Homoplasy index (HI) = 0.4091
+CI excluding uninformative characters = 0.5500
+HI excluding uninformative characters = 0.4500
+Retention index (RI) = 0.7805
+Rescaled consistency index (RC) = 0.4612
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------------ H010
+| |
+| +------------------------ H001
+| |
+| /----------16 /------------ H003
+| | +----------15
+| | | \------------ H005
+| /-----------17 |
+| | | \------------------------ H000
+| | |
+| | \------------------------------------ H013
+21 /----------19
+| | | /------------ H007
+| | | |
+| | \-----------------------------------18------------ H012
+| | |
++----------20 \------------ H011
+| |
+| +------------------------------------------------------------- H008
+| |
+| \------------------------------------------------------------- H014
+|
++------------------------------------------------------------------------- H009
+|
+\------------------------------------------------------------------------- H006
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_20 9 1 0.500 1 ==> 2
+ node_20 --> node_19 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ 13 1 0.500 1 ==> 0
+ node_19 --> node_17 8 1 1.000 1 ==> 2
+ 10 1 0.500 1 ==> 2
+ node_17 --> node_16 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_19 --> node_18 9 1 0.500 2 ==> 1
+ node_18 --> H007 12 1 0.333 2 ==> 1
+ node_18 --> H012 11 1 0.333 2 ==> 1
+ node_18 --> H011 13 1 0.500 0 ==> 1
+ node_20 --> H008 11 1 0.333 2 ==> 1
+ node_20 --> H014 10 1 0.500 1 ==> 2
+ node_21 --> H009 12 1 0.333 2 ==> 1
+ node_21 --> H006 11 1 0.333 2 ==> 1
+
+Tree number 8 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #8 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 23 0 0 0
+ 22 23 0 0 1
+ 21 22 1 1 1
+ 20 21 0 0 3
+ 19 20 3 2 3
+ 17 19 2 1 2
+ 16 17 2 2 2
+H010 (2) 16 1 1 1
+H001 (7) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H013 (6) 17 0 0 0
+ 18 19 1 1 2
+H007 (3) 18 1 1 1
+H012 (10) 18 1 1 1
+H011 (13) 18 1 1 1
+H014 (5) 20 1 0 1
+H008 (4) 21 1 0 1
+H006 (12) 22 1 0 1
+H009 (11) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 22
+
+Tree length = 22
+Consistency index (CI) = 0.5909
+Homoplasy index (HI) = 0.4091
+CI excluding uninformative characters = 0.5500
+HI excluding uninformative characters = 0.4500
+Retention index (RI) = 0.7805
+Rescaled consistency index (RC) = 0.4612
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------ H010
+| |
+| +------------------ H001
+| |
+| /-------16 /--------- H003
+| | +-------15
+| | | \--------- H005
+| /--------17 |
+| | | \------------------ H000
+| | |
+| | \--------------------------- H013
+23 /-------19
+| | | /--------- H007
+| | | |
+| | \--------------------------18--------- H012
+| /-------20 |
+| | | \--------- H011
+| | |
+| /-------21 \---------------------------------------------- H014
+| | |
++-------22 \------------------------------------------------------- H008
+| |
+| \---------------------------------------------------------------- H006
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_21 9 1 0.500 1 ==> 2
+ node_20 --> node_19 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ 13 1 0.500 1 --> 0
+ node_19 --> node_17 8 1 1.000 1 ==> 2
+ 10 1 0.500 1 --> 2
+ node_17 --> node_16 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_19 --> node_18 9 1 0.500 2 ==> 1
+ node_18 --> H007 12 1 0.333 2 ==> 1
+ node_18 --> H012 11 1 0.333 2 ==> 1
+ node_18 --> H011 13 1 0.500 0 ==> 1
+ node_20 --> H014 10 1 0.500 1 --> 2
+ node_21 --> H008 11 1 0.333 2 --> 1
+ node_22 --> H006 11 1 0.333 2 --> 1
+ node_23 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 9 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #9 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 23 0 0 0
+ 20 23 0 0 1
+ 19 20 3 3 3
+ 18 19 0 0 1
+ 17 18 3 3 3
+ 16 17 2 2 2
+H010 (2) 16 1 1 1
+H001 (7) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H013 (6) 17 0 0 0
+H012 (10) 18 1 1 1
+H011 (13) 18 1 1 1
+H007 (3) 19 1 0 1
+H009 (11) 20 1 0 1
+ 22 23 0 0 1
+ 21 22 1 1 1
+H008 (4) 21 1 0 1
+H014 (5) 21 1 1 2
+H006 (12) 22 1 0 1
+-------------------------------------------------------------------------
+Sum 22
+
+Tree length = 22
+Consistency index (CI) = 0.5909
+Homoplasy index (HI) = 0.4091
+CI excluding uninformative characters = 0.5500
+HI excluding uninformative characters = 0.4500
+Retention index (RI) = 0.7805
+Rescaled consistency index (RC) = 0.4612
+
+/------------------------------------------------------------------------- H002
+|
+| /--------------------- H010
+| |
+| +--------------------- H001
+| |
+| /--------16 /---------- H003
+| | +---------15
+| | | \---------- H005
+| /---------17 |
+| | | \--------------------- H000
+| | |
+| | \------------------------------- H013
+23 /--------18
+| | +------------------------------------------ H012
+| | |
+| /---------19 \------------------------------------------ H011
+| | |
++--------20 \---------------------------------------------------- H007
+| |
+| \--------------------------------------------------------------- H009
+|
+| /---------- H008
+| /---------21
+| | \---------- H014
+\--------------------------------------------------22
+ \--------------------- H006
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_20 --> node_19 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ 13 1 0.500 1 ==> 0
+ node_18 --> node_17 8 1 1.000 1 ==> 2
+ 9 1 0.500 1 ==> 2
+ 10 1 0.500 1 ==> 2
+ node_17 --> node_16 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_18 --> H012 11 1 0.333 2 ==> 1
+ node_18 --> H011 13 1 0.500 0 ==> 1
+ node_19 --> H007 12 1 0.333 2 --> 1
+ node_20 --> H009 12 1 0.333 2 --> 1
+ node_22 --> node_21 9 1 0.500 1 ==> 2
+ node_21 --> H008 11 1 0.333 2 --> 1
+ node_21 --> H014 10 1 0.500 1 ==> 2
+ node_22 --> H006 11 1 0.333 2 --> 1
+
+Tree number 10 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #10 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 21 0 0 0
+ 18 21 3 3 3
+ 17 18 3 3 3
+ 16 17 2 2 2
+H010 (2) 16 1 1 1
+H001 (7) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H013 (6) 17 0 0 0
+H007 (3) 18 1 1 1
+H012 (10) 18 1 1 1
+H011 (13) 18 1 1 1
+ 20 21 0 0 1
+ 19 20 1 1 1
+H008 (4) 19 1 0 1
+H006 (12) 19 0 0 1
+H014 (5) 20 2 1 2
+H009 (11) 21 1 1 1
+-------------------------------------------------------------------------
+Sum 22
+
+Tree length = 22
+Consistency index (CI) = 0.5909
+Homoplasy index (HI) = 0.4091
+CI excluding uninformative characters = 0.5500
+HI excluding uninformative characters = 0.4500
+Retention index (RI) = 0.7805
+Rescaled consistency index (RC) = 0.4612
+
+/------------------------------------------------------------------------- H002
+|
+| /----------------------------- H010
+| |
+| +----------------------------- H001
+| |
+| /-------------16 /--------------- H003
+| | +------------15
+| | | \--------------- H005
+| /------------17 |
+| | | \----------------------------- H000
+| | |
+| | \-------------------------------------------- H013
+21 |
++-------------18---------------------------------------------------------- H007
+| |
+| +---------------------------------------------------------- H012
+| |
+| \---------------------------------------------------------- H011
+|
+| /--------------- H008
+| /------------19
+| | \--------------- H006
++------------------------------------------20
+| \----------------------------- H014
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_18 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ 13 1 0.500 1 ==> 0
+ node_18 --> node_17 8 1 1.000 1 ==> 2
+ 9 1 0.333 1 ==> 2
+ 10 1 0.500 1 ==> 2
+ node_17 --> node_16 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_18 --> H007 12 1 0.333 2 ==> 1
+ node_18 --> H012 11 1 0.500 2 ==> 1
+ node_18 --> H011 13 1 0.500 0 ==> 1
+ node_20 --> node_19 11 1 0.500 2 ==> 1
+ node_19 --> H008 9 1 0.333 1 --> 2
+ node_20 --> H014 9 1 0.333 1 --> 2
+ 10 1 0.500 1 ==> 2
+ node_21 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 11 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #11 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 23 0 0 0
+ 22 23 0 0 1
+ 20 22 0 0 1
+ 19 20 3 3 3
+ 18 19 0 0 1
+ 17 18 3 3 3
+ 16 17 2 2 2
+H010 (2) 16 1 1 1
+H001 (7) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H013 (6) 17 0 0 0
+H007 (3) 18 1 1 1
+H011 (13) 18 1 1 1
+H012 (10) 19 1 0 1
+H006 (12) 20 1 0 1
+ 21 22 1 1 1
+H008 (4) 21 1 0 1
+H014 (5) 21 1 1 2
+H009 (11) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 22
+
+Tree length = 22
+Consistency index (CI) = 0.5909
+Homoplasy index (HI) = 0.4091
+CI excluding uninformative characters = 0.5500
+HI excluding uninformative characters = 0.4500
+Retention index (RI) = 0.7805
+Rescaled consistency index (RC) = 0.4612
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------ H010
+| |
+| +------------------ H001
+| |
+| /-------16 /--------- H003
+| | +-------15
+| | | \--------- H005
+| /--------17 |
+| | | \------------------ H000
+| | |
+| | \--------------------------- H013
+23 /-------18
+| | +------------------------------------- H007
+| | |
+| /-------19 \------------------------------------- H011
+| | |
+| /-------20 \---------------------------------------------- H012
+| | |
+| | \------------------------------------------------------- H006
++-------22
+| | /--------- H008
+| \-----------------------------------------------------21
+| \--------- H014
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_20 --> node_19 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ 13 1 0.500 1 ==> 0
+ node_18 --> node_17 8 1 1.000 1 ==> 2
+ 9 1 0.500 1 ==> 2
+ 10 1 0.500 1 ==> 2
+ node_17 --> node_16 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_18 --> H007 12 1 0.333 2 ==> 1
+ node_18 --> H011 13 1 0.500 0 ==> 1
+ node_19 --> H012 11 1 0.333 2 --> 1
+ node_20 --> H006 11 1 0.333 2 --> 1
+ node_22 --> node_21 9 1 0.500 1 ==> 2
+ node_21 --> H008 11 1 0.333 2 --> 1
+ node_21 --> H014 10 1 0.500 1 ==> 2
+ node_23 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 12 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #12 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 20 0 0 0
+ 18 20 3 3 3
+ 17 18 3 3 3
+ 16 17 2 2 2
+H010 (2) 16 1 1 1
+H001 (7) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H013 (6) 17 0 0 0
+H007 (3) 18 1 1 1
+H012 (10) 18 1 1 1
+H011 (13) 18 1 1 1
+ 19 20 1 1 1
+H008 (4) 19 1 1 1
+H006 (12) 19 0 0 0
+H014 (5) 20 2 2 2
+H009 (11) 20 1 1 1
+-------------------------------------------------------------------------
+Sum 22
+
+Tree length = 22
+Consistency index (CI) = 0.5909
+Homoplasy index (HI) = 0.4091
+CI excluding uninformative characters = 0.5500
+HI excluding uninformative characters = 0.4500
+Retention index (RI) = 0.7805
+Rescaled consistency index (RC) = 0.4612
+
+/------------------------------------------------------------------------- H002
+|
+| /----------------------------- H010
+| |
+| +----------------------------- H001
+| |
+| /-------------16 /--------------- H003
+| | +------------15
+| | | \--------------- H005
+| /------------17 |
+| | | \----------------------------- H000
+| | |
+| | \-------------------------------------------- H013
+20 |
++-------------18---------------------------------------------------------- H007
+| |
+| +---------------------------------------------------------- H012
+| |
+| \---------------------------------------------------------- H011
+|
+| /--------------- H008
++--------------------------------------------------------19
+| \--------------- H006
+|
++------------------------------------------------------------------------- H014
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_20 --> node_18 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ 13 1 0.500 1 ==> 0
+ node_18 --> node_17 8 1 1.000 1 ==> 2
+ 9 1 0.333 1 ==> 2
+ 10 1 0.500 1 ==> 2
+ node_17 --> node_16 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_18 --> H007 12 1 0.333 2 ==> 1
+ node_18 --> H012 11 1 0.500 2 ==> 1
+ node_18 --> H011 13 1 0.500 0 ==> 1
+ node_20 --> node_19 11 1 0.500 2 ==> 1
+ node_19 --> H008 9 1 0.333 1 ==> 2
+ node_20 --> H014 9 1 0.333 1 ==> 2
+ 10 1 0.500 1 ==> 2
+ node_20 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 13 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #13 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 22 0 0 0
+ 20 22 1 1 1
+ 19 20 1 1 2
+ 18 19 1 1 4
+ 17 18 2 2 3
+ 16 17 2 0 3
+H010 (2) 16 1 1 1
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 1 0 1
+H013 (6) 17 0 0 2
+H001 (7) 18 2 0 2
+H014 (5) 19 0 0 0
+H008 (4) 20 1 1 1
+ 21 22 2 2 3
+H007 (3) 21 2 1 2
+H012 (10) 21 2 1 2
+H011 (13) 21 0 0 1
+H009 (11) 22 1 1 1
+H006 (12) 22 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+/------------------------------------------------------------------------- H002
+|
+| /--------------------- H010
+| |
+| | /---------- H003
+| /--------16---------15
+| | | \---------- H005
+| | |
+| /---------17 \--------------------- H000
+| | |
+| /--------18 \------------------------------- H013
+| | |
+| /---------19 \------------------------------------------ H001
+22 | |
++--------20 \---------------------------------------------------- H014
+| |
+| \--------------------------------------------------------------- H008
+|
+| /---------- H007
+| |
++-------------------------------------------------------------21---------- H012
+| |
+| \---------- H011
+|
++------------------------------------------------------------------------- H009
+|
+\------------------------------------------------------------------------- H006
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_20 9 1 1.000 1 ==> 2
+ node_20 --> node_19 10 1 1.000 1 ==> 2
+ node_19 --> node_18 8 1 1.000 1 ==> 2
+ node_18 --> node_17 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_17 --> node_16 6 1 0.500 1 --> 2
+ 7 1 0.500 1 --> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_16 --> H000 13 1 0.333 1 --> 0
+ node_18 --> H001 6 1 0.500 1 --> 2
+ 7 1 0.500 1 --> 2
+ node_20 --> H008 11 1 0.333 2 ==> 1
+ node_22 --> node_21 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_21 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_21 --> H012 11 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_22 --> H009 12 1 0.333 2 ==> 1
+ node_22 --> H006 11 1 0.333 2 ==> 1
+
+Tree number 14 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #14 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 21 0 0 0
+ 19 21 1 1 1
+ 18 19 1 1 2
+ 17 18 3 3 4
+ 16 17 2 2 3
+H010 (2) 16 1 1 1
+H013 (6) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 1 0 1
+H001 (7) 17 0 0 0
+H014 (5) 18 0 0 0
+H008 (4) 19 1 1 1
+ 20 21 2 2 3
+H007 (3) 20 2 1 2
+H012 (10) 20 2 1 2
+H011 (13) 20 0 0 1
+H009 (11) 21 1 1 1
+H006 (12) 21 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------------ H010
+| |
+| +------------------------ H013
+| |
+| /----------16 /------------ H003
+| | +----------15
+| | | \------------ H005
+| /-----------17 |
+| | | \------------------------ H000
+| | |
+| /----------18 \------------------------------------ H001
+21 | |
++----------19 \------------------------------------------------- H014
+| |
+| \------------------------------------------------------------- H008
+|
+| /------------ H007
+| |
++-----------------------------------------------------------20------------ H012
+| |
+| \------------ H011
+|
++------------------------------------------------------------------------- H009
+|
+\------------------------------------------------------------------------- H006
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_19 9 1 1.000 1 ==> 2
+ node_19 --> node_18 10 1 1.000 1 ==> 2
+ node_18 --> node_17 6 1 0.500 1 ==> 2
+ 7 1 0.500 1 ==> 2
+ 8 1 1.000 1 ==> 2
+ node_17 --> node_16 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_16 --> H000 13 1 0.333 1 --> 0
+ node_19 --> H008 11 1 0.333 2 ==> 1
+ node_21 --> node_20 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_20 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_20 --> H012 11 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_21 --> H009 12 1 0.333 2 ==> 1
+ node_21 --> H006 11 1 0.333 2 ==> 1
+
+Tree number 15 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #15 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 21 0 0 0
+ 19 21 1 1 1
+ 18 19 1 1 2
+ 17 18 3 3 4
+ 16 17 2 2 3
+H010 (2) 16 1 1 1
+H001 (7) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 1 0 1
+H013 (6) 17 0 0 0
+H014 (5) 18 0 0 0
+H008 (4) 19 1 1 1
+ 20 21 2 2 3
+H007 (3) 20 2 1 2
+H012 (10) 20 2 1 2
+H011 (13) 20 0 0 1
+H009 (11) 21 1 1 1
+H006 (12) 21 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------------ H010
+| |
+| +------------------------ H001
+| |
+| /----------16 /------------ H003
+| | +----------15
+| | | \------------ H005
+| /-----------17 |
+| | | \------------------------ H000
+| | |
+| /----------18 \------------------------------------ H013
+21 | |
++----------19 \------------------------------------------------- H014
+| |
+| \------------------------------------------------------------- H008
+|
+| /------------ H007
+| |
++-----------------------------------------------------------20------------ H012
+| |
+| \------------ H011
+|
++------------------------------------------------------------------------- H009
+|
+\------------------------------------------------------------------------- H006
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_19 9 1 1.000 1 ==> 2
+ node_19 --> node_18 10 1 1.000 1 ==> 2
+ node_18 --> node_17 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ 8 1 1.000 1 ==> 2
+ node_17 --> node_16 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_16 --> H000 13 1 0.333 1 --> 0
+ node_19 --> H008 11 1 0.333 2 ==> 1
+ node_21 --> node_20 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_20 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_20 --> H012 11 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_21 --> H009 12 1 0.333 2 ==> 1
+ node_21 --> H006 11 1 0.333 2 ==> 1
+
+Tree number 16 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #16 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 22 0 0 0
+ 19 22 2 2 3
+ 18 19 1 1 4
+ 17 18 2 2 3
+ 16 17 2 0 3
+H010 (2) 16 1 1 1
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 1
+H001 (7) 17 0 0 2
+H013 (6) 18 2 0 2
+H014 (5) 19 0 0 0
+ 20 22 2 2 3
+H007 (3) 20 1 1 2
+H012 (10) 20 1 1 2
+H011 (13) 20 1 0 1
+ 21 22 2 1 2
+H008 (4) 21 1 1 1
+H006 (12) 21 0 0 0
+H009 (11) 22 2 1 2
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------------ H010
+| |
+| | /------------ H003
+| /----------16----------15
+| | | \------------ H005
+| | |
+| /-----------17 \------------------------ H000
+| | |
+| /----------18 \------------------------------------ H001
+| | |
++----------19 \------------------------------------------------- H013
+22 |
+| \------------------------------------------------------------- H014
+|
+| /------------ H007
+| |
++-----------------------------------------------------------20------------ H012
+| |
+| \------------ H011
+|
+| /------------ H008
++-----------------------------------------------------------21
+| \------------ H006
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_19 9 1 0.500 1 ==> 2
+ 10 1 1.000 1 ==> 2
+ node_19 --> node_18 8 1 1.000 1 ==> 2
+ node_18 --> node_17 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_17 --> node_16 1 1 0.333 1 --> 2
+ 2 1 0.333 1 --> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_18 --> H013 1 1 0.333 1 --> 2
+ 2 1 0.333 1 --> 2
+ node_22 --> node_20 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_20 --> H007 12 1 0.333 2 ==> 1
+ node_20 --> H012 11 1 0.500 2 ==> 1
+ node_20 --> H011 13 1 0.333 0 --> 1
+ node_22 --> node_21 11 1 0.500 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_21 --> H008 9 1 0.500 1 ==> 2
+ node_22 --> H009 12 1 0.333 2 ==> 1
+ 13 1 0.333 0 --> 1
+
+Tree number 17 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #17 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 24 0 0 0
+ 20 24 1 1 1
+ 19 20 1 1 2
+ 18 19 1 1 4
+ 17 18 2 2 3
+ 16 17 2 0 3
+H010 (2) 16 1 1 1
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 1 0 1
+H001 (7) 17 0 0 2
+H013 (6) 18 2 0 2
+H014 (5) 19 0 0 0
+H008 (4) 20 1 1 1
+ 23 24 0 0 1
+ 22 23 2 2 3
+ 21 22 0 0 1
+H007 (3) 21 2 1 2
+H011 (13) 21 0 0 1
+H012 (10) 22 2 0 2
+H006 (12) 23 1 0 1
+H009 (11) 24 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+/------------------------------------------------------------------------- H002
+|
+| /--------------------- H010
+| |
+| | /---------- H003
+| /--------16---------15
+| | | \---------- H005
+| | |
+| /---------17 \--------------------- H000
+| | |
+| /--------18 \------------------------------- H001
+| | |
+| /---------19 \------------------------------------------ H013
+24 | |
++--------20 \---------------------------------------------------- H014
+| |
+| \--------------------------------------------------------------- H008
+|
+| /---------- H007
+| /---------21
+| | \---------- H011
+| /--------22
+| | \--------------------- H012
++----------------------------------------23
+| \------------------------------- H006
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_24 --> node_20 9 1 1.000 1 ==> 2
+ node_20 --> node_19 10 1 1.000 1 ==> 2
+ node_19 --> node_18 8 1 1.000 1 ==> 2
+ node_18 --> node_17 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_17 --> node_16 1 1 0.333 1 --> 2
+ 2 1 0.333 1 --> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_16 --> H000 13 1 0.333 1 --> 0
+ node_18 --> H013 1 1 0.333 1 --> 2
+ 2 1 0.333 1 --> 2
+ node_20 --> H008 11 1 0.333 2 ==> 1
+ node_23 --> node_22 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_21 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_22 --> H012 11 1 0.333 2 --> 1
+ 13 1 0.333 1 --> 0
+ node_23 --> H006 11 1 0.333 2 --> 1
+ node_24 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 18 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #18 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 22 0 0 0
+ 21 22 1 1 1
+ 20 21 0 0 2
+ 19 20 3 2 3
+ 17 19 2 1 2
+ 16 17 2 2 2
+H010 (2) 16 1 1 1
+H001 (7) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H013 (6) 17 0 0 0
+ 18 19 1 1 2
+H007 (3) 18 1 1 1
+H012 (10) 18 1 1 1
+H011 (13) 18 1 1 1
+H014 (5) 20 1 0 1
+H008 (4) 21 1 1 1
+H009 (11) 22 1 1 1
+H006 (12) 22 1 1 1
+-------------------------------------------------------------------------
+Sum 22
+
+Tree length = 22
+Consistency index (CI) = 0.5909
+Homoplasy index (HI) = 0.4091
+CI excluding uninformative characters = 0.5500
+HI excluding uninformative characters = 0.4500
+Retention index (RI) = 0.7805
+Rescaled consistency index (RC) = 0.4612
+
+/------------------------------------------------------------------------- H002
+|
+| /--------------------- H010
+| |
+| +--------------------- H001
+| |
+| /--------16 /---------- H003
+| | +---------15
+| | | \---------- H005
+| /---------17 |
+| | | \--------------------- H000
+| | |
+| | \------------------------------- H013
+22 /--------19
+| | | /---------- H007
+| | | |
+| | \------------------------------18---------- H012
+| /---------20 |
+| | | \---------- H011
+| | |
++--------21 \---------------------------------------------------- H014
+| |
+| \--------------------------------------------------------------- H008
+|
++------------------------------------------------------------------------- H009
+|
+\------------------------------------------------------------------------- H006
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_21 9 1 0.500 1 ==> 2
+ node_20 --> node_19 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ 13 1 0.500 1 --> 0
+ node_19 --> node_17 8 1 1.000 1 ==> 2
+ 10 1 0.500 1 --> 2
+ node_17 --> node_16 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_19 --> node_18 9 1 0.500 2 ==> 1
+ node_18 --> H007 12 1 0.333 2 ==> 1
+ node_18 --> H012 11 1 0.333 2 ==> 1
+ node_18 --> H011 13 1 0.500 0 ==> 1
+ node_20 --> H014 10 1 0.500 1 --> 2
+ node_21 --> H008 11 1 0.333 2 ==> 1
+ node_22 --> H009 12 1 0.333 2 ==> 1
+ node_22 --> H006 11 1 0.333 2 ==> 1
+
+Tree number 19 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #19 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 24 0 0 0
+ 20 24 1 1 1
+ 19 20 1 1 2
+ 18 19 1 1 4
+ 17 18 2 2 3
+ 16 17 2 0 3
+H010 (2) 16 1 1 1
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 1 0 1
+H001 (7) 17 0 0 2
+H013 (6) 18 2 0 2
+H014 (5) 19 0 0 0
+H008 (4) 20 1 1 1
+ 23 24 0 0 1
+ 22 23 2 2 3
+H007 (3) 22 2 0 2
+ 21 22 0 0 1
+H012 (10) 21 2 1 2
+H011 (13) 21 0 0 1
+H009 (11) 23 1 0 1
+H006 (12) 24 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+/------------------------------------------------------------------------- H002
+|
+| /--------------------- H010
+| |
+| | /---------- H003
+| /--------16---------15
+| | | \---------- H005
+| | |
+| /---------17 \--------------------- H000
+| | |
+| /--------18 \------------------------------- H001
+| | |
+| /---------19 \------------------------------------------ H013
+24 | |
++--------20 \---------------------------------------------------- H014
+| |
+| \--------------------------------------------------------------- H008
+|
+| /--------------------- H007
+| |
+| /--------22 /---------- H012
+| | \---------21
++----------------------------------------23 \---------- H011
+| |
+| \------------------------------- H009
+|
+\------------------------------------------------------------------------- H006
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_24 --> node_20 9 1 1.000 1 ==> 2
+ node_20 --> node_19 10 1 1.000 1 ==> 2
+ node_19 --> node_18 8 1 1.000 1 ==> 2
+ node_18 --> node_17 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_17 --> node_16 1 1 0.333 1 --> 2
+ 2 1 0.333 1 --> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_16 --> H000 13 1 0.333 1 --> 0
+ node_18 --> H013 1 1 0.333 1 --> 2
+ 2 1 0.333 1 --> 2
+ node_20 --> H008 11 1 0.333 2 ==> 1
+ node_23 --> node_22 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_22 --> H007 12 1 0.333 2 --> 1
+ 13 1 0.333 1 --> 0
+ node_21 --> H012 11 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_23 --> H009 12 1 0.333 2 --> 1
+ node_24 --> H006 11 1 0.333 2 ==> 1
+
+Tree number 20 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #20 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 24 0 0 0
+ 23 24 0 0 1
+ 20 23 1 1 1
+ 19 20 1 1 3
+ 18 19 1 1 4
+ 17 18 2 2 3
+ 16 17 2 0 3
+H010 (2) 16 1 1 1
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 1 0 1
+H001 (7) 17 0 0 2
+H013 (6) 18 2 0 2
+H014 (5) 19 0 0 0
+H008 (4) 20 1 0 1
+ 22 23 2 2 3
+ 21 22 0 0 1
+H007 (3) 21 2 1 2
+H011 (13) 21 0 0 1
+H012 (10) 22 2 0 2
+H006 (12) 23 1 0 1
+H009 (11) 24 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------ H010
+| |
+| | /--------- H003
+| /-------16-------15
+| | | \--------- H005
+| | |
+| /--------17 \------------------ H000
+| | |
+| /-------18 \--------------------------- H001
+| | |
+| /-------19 \------------------------------------- H013
+24 | |
+| /-------20 \---------------------------------------------- H014
+| | |
+| | \------------------------------------------------------- H008
+| |
+| | /--------- H007
++-------23 /-------21
+| | | \--------- H011
+| +--------------------------------------------22
+| | \------------------ H012
+| |
+| \---------------------------------------------------------------- H006
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_20 9 1 1.000 1 ==> 2
+ node_20 --> node_19 10 1 1.000 1 ==> 2
+ node_19 --> node_18 8 1 1.000 1 ==> 2
+ node_18 --> node_17 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_17 --> node_16 1 1 0.333 1 --> 2
+ 2 1 0.333 1 --> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_16 --> H000 13 1 0.333 1 --> 0
+ node_18 --> H013 1 1 0.333 1 --> 2
+ 2 1 0.333 1 --> 2
+ node_20 --> H008 11 1 0.333 2 --> 1
+ node_23 --> node_22 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_21 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_22 --> H012 11 1 0.333 2 --> 1
+ 13 1 0.333 1 --> 0
+ node_23 --> H006 11 1 0.333 2 --> 1
+ node_24 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 21 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #21 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 23 0 0 0
+ 21 23 0 0 1
+ 20 21 1 1 1
+ 19 20 1 1 3
+ 18 19 1 1 4
+ 17 18 2 2 3
+ 16 17 2 0 3
+H010 (2) 16 1 1 1
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 1 0 1
+H001 (7) 17 0 0 2
+H013 (6) 18 2 0 2
+H014 (5) 19 0 0 0
+H008 (4) 20 1 0 1
+H006 (12) 21 1 0 1
+ 22 23 2 2 3
+H007 (3) 22 2 1 2
+H012 (10) 22 2 1 2
+H011 (13) 22 0 0 1
+H009 (11) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------ H010
+| |
+| | /--------- H003
+| /-------16-------15
+| | | \--------- H005
+| | |
+| /--------17 \------------------ H000
+| | |
+| /-------18 \--------------------------- H001
+| | |
+| /-------19 \------------------------------------- H013
+23 | |
+| /-------20 \---------------------------------------------- H014
+| | |
++-------21 \------------------------------------------------------- H008
+| |
+| \---------------------------------------------------------------- H006
+|
+| /--------- H007
+| |
++--------------------------------------------------------------22--------- H012
+| |
+| \--------- H011
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_20 9 1 1.000 1 ==> 2
+ node_20 --> node_19 10 1 1.000 1 ==> 2
+ node_19 --> node_18 8 1 1.000 1 ==> 2
+ node_18 --> node_17 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_17 --> node_16 1 1 0.333 1 --> 2
+ 2 1 0.333 1 --> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_16 --> H000 13 1 0.333 1 --> 0
+ node_18 --> H013 1 1 0.333 1 --> 2
+ 2 1 0.333 1 --> 2
+ node_20 --> H008 11 1 0.333 2 --> 1
+ node_21 --> H006 11 1 0.333 2 --> 1
+ node_23 --> node_22 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_22 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_22 --> H012 11 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_23 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 22 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #22 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 23 0 0 0
+ 21 23 0 0 1
+ 19 21 2 1 3
+ 18 19 1 1 4
+ 17 18 2 2 3
+ 16 17 2 0 3
+H010 (2) 16 1 1 1
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 1
+H001 (7) 17 0 0 2
+H013 (6) 18 2 0 2
+H014 (5) 19 0 0 0
+ 20 21 2 1 2
+H008 (4) 20 1 0 1
+H006 (12) 20 0 0 1
+ 22 23 2 2 3
+H007 (3) 22 1 1 2
+H012 (10) 22 1 1 2
+H011 (13) 22 1 0 1
+H009 (11) 23 2 1 2
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+/------------------------------------------------------------------------- H002
+|
+| /--------------------- H010
+| |
+| | /---------- H003
+| /--------16---------15
+| | | \---------- H005
+| | |
+| /---------17 \--------------------- H000
+| | |
+| /--------18 \------------------------------- H001
+| | |
+| /---------19 \------------------------------------------ H013
+23 | |
+| | \---------------------------------------------------- H014
++--------21
+| | /---------- H008
+| \---------------------------------------------------20
+| \---------- H006
+|
+| /---------- H007
+| |
++-------------------------------------------------------------22---------- H012
+| |
+| \---------- H011
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_19 9 1 0.500 1 --> 2
+ 10 1 1.000 1 ==> 2
+ node_19 --> node_18 8 1 1.000 1 ==> 2
+ node_18 --> node_17 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_17 --> node_16 1 1 0.333 1 --> 2
+ 2 1 0.333 1 --> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_18 --> H013 1 1 0.333 1 --> 2
+ 2 1 0.333 1 --> 2
+ node_21 --> node_20 11 1 0.500 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_20 --> H008 9 1 0.500 1 --> 2
+ node_23 --> node_22 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_22 --> H007 12 1 0.333 2 ==> 1
+ node_22 --> H012 11 1 0.500 2 ==> 1
+ node_22 --> H011 13 1 0.333 0 --> 1
+ node_23 --> H009 12 1 0.333 2 ==> 1
+ 13 1 0.333 0 --> 1
+
+Tree number 23 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #23 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 25 0 0 0
+ 24 25 0 0 1
+ 21 24 0 0 1
+ 20 21 1 1 1
+ 19 20 1 1 3
+ 18 19 1 1 4
+ 17 18 2 2 3
+ 16 17 2 0 3
+H010 (2) 16 1 1 1
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 1 0 1
+H001 (7) 17 0 0 2
+H013 (6) 18 2 0 2
+H014 (5) 19 0 0 0
+H008 (4) 20 1 0 1
+H006 (12) 21 1 0 1
+ 23 24 2 2 3
+ 22 23 0 0 1
+H007 (3) 22 2 1 2
+H011 (13) 22 0 0 1
+H012 (10) 23 2 0 2
+H009 (11) 25 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+/------------------------------------------------------------------------- H002
+|
+| /---------------- H010
+| |
+| | /-------- H003
+| /------16------15
+| | | \-------- H005
+| | |
+| /------17 \---------------- H000
+| | |
+| /-------18 \------------------------ H001
+| | |
+| /------19 \-------------------------------- H013
+25 | |
+| /------20 \----------------------------------------- H014
+| | |
+| /------21 \------------------------------------------------- H008
+| | |
+| | \--------------------------------------------------------- H006
+| |
++------24 /-------- H007
+| | /------22
+| | | \-------- H011
+| \-----------------------------------------------23
+| \---------------- H012
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_20 9 1 1.000 1 ==> 2
+ node_20 --> node_19 10 1 1.000 1 ==> 2
+ node_19 --> node_18 8 1 1.000 1 ==> 2
+ node_18 --> node_17 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_17 --> node_16 1 1 0.333 1 --> 2
+ 2 1 0.333 1 --> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_16 --> H000 13 1 0.333 1 --> 0
+ node_18 --> H013 1 1 0.333 1 --> 2
+ 2 1 0.333 1 --> 2
+ node_20 --> H008 11 1 0.333 2 --> 1
+ node_21 --> H006 11 1 0.333 2 --> 1
+ node_24 --> node_23 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_22 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_23 --> H012 11 1 0.333 2 --> 1
+ 13 1 0.333 1 --> 0
+ node_25 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 24 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #24 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 22 0 0 0
+ 20 22 0 0 1
+ 19 20 1 1 1
+ 18 19 1 1 3
+ 17 18 3 3 4
+ 16 17 2 2 3
+H010 (2) 16 1 1 1
+H001 (7) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 1 0 1
+H013 (6) 17 0 0 0
+H014 (5) 18 0 0 0
+H008 (4) 19 1 0 1
+H006 (12) 20 1 0 1
+ 21 22 2 2 3
+H007 (3) 21 2 1 2
+H012 (10) 21 2 1 2
+H011 (13) 21 0 0 1
+H009 (11) 22 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+/------------------------------------------------------------------------- H002
+|
+| /--------------------- H010
+| |
+| +--------------------- H001
+| |
+| /--------16 /---------- H003
+| | +---------15
+| | | \---------- H005
+| /---------17 |
+| | | \--------------------- H000
+| | |
+| /--------18 \------------------------------- H013
+22 | |
+| /---------19 \------------------------------------------ H014
+| | |
++--------20 \---------------------------------------------------- H008
+| |
+| \--------------------------------------------------------------- H006
+|
+| /---------- H007
+| |
++-------------------------------------------------------------21---------- H012
+| |
+| \---------- H011
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_20 --> node_19 9 1 1.000 1 ==> 2
+ node_19 --> node_18 10 1 1.000 1 ==> 2
+ node_18 --> node_17 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ 8 1 1.000 1 ==> 2
+ node_17 --> node_16 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_16 --> H000 13 1 0.333 1 --> 0
+ node_19 --> H008 11 1 0.333 2 --> 1
+ node_20 --> H006 11 1 0.333 2 --> 1
+ node_22 --> node_21 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_21 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_21 --> H012 11 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_22 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 25 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #25 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 23 0 0 0
+ 22 23 0 0 1
+ 19 22 3 3 3
+ 17 19 3 2 3
+ 16 17 2 2 2
+H010 (2) 16 1 1 1
+H001 (7) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H013 (6) 17 0 0 0
+ 18 19 0 0 1
+H007 (3) 18 1 1 1
+H012 (10) 18 1 1 1
+H011 (13) 18 1 1 1
+ 21 22 0 0 1
+ 20 21 1 1 1
+H008 (4) 20 1 0 1
+H006 (12) 20 0 0 1
+H014 (5) 21 2 1 2
+H009 (11) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 22
+
+Tree length = 22
+Consistency index (CI) = 0.5909
+Homoplasy index (HI) = 0.4091
+CI excluding uninformative characters = 0.5500
+HI excluding uninformative characters = 0.4500
+Retention index (RI) = 0.7805
+Rescaled consistency index (RC) = 0.4612
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------------ H010
+| |
+| +------------------------ H001
+| |
+| /----------16 /------------ H003
+| | +----------15
+| | | \------------ H005
+| /-----------17 |
+| | | \------------------------ H000
+| | |
+| | \------------------------------------ H013
+23 /----------19
+| | | /------------ H007
+| | | |
+| | \-----------------------------------18------------ H012
+| | |
++----------22 \------------ H011
+| |
+| | /------------ H008
+| | /----------20
+| | | \------------ H006
+| \-----------------------------------21
+| \------------------------ H014
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_19 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ 13 1 0.500 1 ==> 0
+ node_19 --> node_17 8 1 1.000 1 ==> 2
+ 9 1 0.333 1 --> 2
+ 10 1 0.500 1 ==> 2
+ node_17 --> node_16 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_18 --> H007 12 1 0.333 2 ==> 1
+ node_18 --> H012 11 1 0.500 2 ==> 1
+ node_18 --> H011 13 1 0.500 0 ==> 1
+ node_21 --> node_20 11 1 0.500 2 ==> 1
+ node_20 --> H008 9 1 0.333 1 --> 2
+ node_21 --> H014 9 1 0.333 1 --> 2
+ 10 1 0.500 1 ==> 2
+ node_23 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 26 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #26 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 22 0 0 0
+ 20 22 0 0 3
+ 19 20 3 2 3
+ 17 19 3 1 3
+ 16 17 2 2 2
+H010 (2) 16 1 1 1
+H001 (7) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H013 (6) 17 0 0 0
+ 18 19 0 0 2
+H007 (3) 18 1 1 1
+H012 (10) 18 1 1 1
+H011 (13) 18 1 1 1
+H014 (5) 20 2 0 2
+ 21 22 1 1 1
+H008 (4) 21 1 1 1
+H006 (12) 21 0 0 0
+H009 (11) 22 1 1 1
+-------------------------------------------------------------------------
+Sum 22
+
+Tree length = 22
+Consistency index (CI) = 0.5909
+Homoplasy index (HI) = 0.4091
+CI excluding uninformative characters = 0.5500
+HI excluding uninformative characters = 0.4500
+Retention index (RI) = 0.7805
+Rescaled consistency index (RC) = 0.4612
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------------ H010
+| |
+| +------------------------ H001
+| |
+| /----------16 /------------ H003
+| | +----------15
+| | | \------------ H005
+| /-----------17 |
+| | | \------------------------ H000
+| | |
+| | \------------------------------------ H013
+22 /----------19
+| | | /------------ H007
+| | | |
+| | \-----------------------------------18------------ H012
++----------20 |
+| | \------------ H011
+| |
+| \------------------------------------------------------------- H014
+|
+| /------------ H008
++-----------------------------------------------------------21
+| \------------ H006
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_20 --> node_19 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ 13 1 0.500 1 --> 0
+ node_19 --> node_17 8 1 1.000 1 ==> 2
+ 9 1 0.333 1 --> 2
+ 10 1 0.500 1 --> 2
+ node_17 --> node_16 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_18 --> H007 12 1 0.333 2 ==> 1
+ node_18 --> H012 11 1 0.500 2 ==> 1
+ node_18 --> H011 13 1 0.500 0 ==> 1
+ node_20 --> H014 9 1 0.333 1 --> 2
+ 10 1 0.500 1 --> 2
+ node_22 --> node_21 11 1 0.500 2 ==> 1
+ node_21 --> H008 9 1 0.333 1 ==> 2
+ node_22 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 27 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #27 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 22 0 0 0
+ 20 22 1 1 3
+ 18 20 2 2 2
+ 17 18 3 1 3
+ 16 17 2 2 2
+H010 (2) 16 1 1 1
+H001 (7) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H013 (6) 17 0 0 0
+H014 (5) 18 0 0 2
+ 19 20 2 0 2
+H007 (3) 19 1 1 1
+H012 (10) 19 1 1 1
+H011 (13) 19 1 1 1
+ 21 22 1 1 1
+H008 (4) 21 1 1 1
+H006 (12) 21 0 0 0
+H009 (11) 22 1 1 1
+-------------------------------------------------------------------------
+Sum 22
+
+Tree length = 22
+Consistency index (CI) = 0.5909
+Homoplasy index (HI) = 0.4091
+CI excluding uninformative characters = 0.5500
+HI excluding uninformative characters = 0.4500
+Retention index (RI) = 0.7805
+Rescaled consistency index (RC) = 0.4612
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------------ H010
+| |
+| +------------------------ H001
+| |
+| /----------16 /------------ H003
+| | +----------15
+| | | \------------ H005
+| /-----------17 |
+| | | \------------------------ H000
+| | |
+| /----------18 \------------------------------------ H013
+22 | |
+| | \------------------------------------------------- H014
++----------20
+| | /------------ H007
+| | |
+| \-----------------------------------------------19------------ H012
+| |
+| \------------ H011
+|
+| /------------ H008
++-----------------------------------------------------------21
+| \------------ H006
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_20 13 1 0.500 1 ==> 0
+ node_20 --> node_18 9 1 0.500 1 ==> 2
+ 10 1 1.000 1 ==> 2
+ node_18 --> node_17 1 1 0.333 1 --> 2
+ 2 1 0.333 1 --> 2
+ 8 1 1.000 1 ==> 2
+ node_17 --> node_16 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_20 --> node_19 1 1 0.333 1 --> 2
+ 2 1 0.333 1 --> 2
+ node_19 --> H007 12 1 0.333 2 ==> 1
+ node_19 --> H012 11 1 0.500 2 ==> 1
+ node_19 --> H011 13 1 0.500 0 ==> 1
+ node_22 --> node_21 11 1 0.500 2 ==> 1
+ node_21 --> H008 9 1 0.500 1 ==> 2
+ node_22 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 28 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #28 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 22 0 0 0
+ 20 22 0 0 1
+ 19 20 1 1 1
+ 18 19 1 1 3
+ 17 18 3 3 4
+ 16 17 2 2 3
+H010 (2) 16 1 1 1
+H013 (6) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 1 0 1
+H001 (7) 17 0 0 0
+H014 (5) 18 0 0 0
+H008 (4) 19 1 0 1
+H006 (12) 20 1 0 1
+ 21 22 2 2 3
+H007 (3) 21 2 1 2
+H012 (10) 21 2 1 2
+H011 (13) 21 0 0 1
+H009 (11) 22 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+/------------------------------------------------------------------------- H002
+|
+| /--------------------- H010
+| |
+| +--------------------- H013
+| |
+| /--------16 /---------- H003
+| | +---------15
+| | | \---------- H005
+| /---------17 |
+| | | \--------------------- H000
+| | |
+| /--------18 \------------------------------- H001
+22 | |
+| /---------19 \------------------------------------------ H014
+| | |
++--------20 \---------------------------------------------------- H008
+| |
+| \--------------------------------------------------------------- H006
+|
+| /---------- H007
+| |
++-------------------------------------------------------------21---------- H012
+| |
+| \---------- H011
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_20 --> node_19 9 1 1.000 1 ==> 2
+ node_19 --> node_18 10 1 1.000 1 ==> 2
+ node_18 --> node_17 6 1 0.500 1 ==> 2
+ 7 1 0.500 1 ==> 2
+ 8 1 1.000 1 ==> 2
+ node_17 --> node_16 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_16 --> H000 13 1 0.333 1 --> 0
+ node_19 --> H008 11 1 0.333 2 --> 1
+ node_20 --> H006 11 1 0.333 2 --> 1
+ node_22 --> node_21 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_21 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_21 --> H012 11 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_22 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 29 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #29 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 23 0 0 0
+ 22 23 0 0 1
+ 21 22 1 1 1
+ 20 21 0 0 1
+ 19 20 3 3 3
+ 18 19 1 1 1
+ 17 18 3 3 3
+ 16 17 2 2 2
+H010 (2) 16 1 1 1
+H001 (7) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H013 (6) 17 0 0 0
+H007 (3) 18 1 1 1
+H011 (13) 18 1 1 1
+H012 (10) 19 0 0 0
+H006 (12) 20 0 0 0
+H008 (4) 21 1 0 1
+H014 (5) 22 2 1 2
+H009 (11) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 22
+
+Tree length = 22
+Consistency index (CI) = 0.5909
+Homoplasy index (HI) = 0.4091
+CI excluding uninformative characters = 0.5500
+HI excluding uninformative characters = 0.4500
+Retention index (RI) = 0.7805
+Rescaled consistency index (RC) = 0.4612
+
+/------------------------------------------------------------------------- H002
+|
+| /---------------- H010
+| |
+| +---------------- H001
+| |
+| /------16 /-------- H003
+| | +------15
+| | | \-------- H005
+| /------17 |
+| | | \---------------- H000
+| | |
+| | \------------------------ H013
+23 /-------18
+| | +-------------------------------- H007
+| | |
+| /------19 \-------------------------------- H011
+| | |
+| /------20 \----------------------------------------- H012
+| | |
+| /------21 \------------------------------------------------- H006
+| | |
++------22 \--------------------------------------------------------- H008
+| |
+| \----------------------------------------------------------------- H014
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_21 11 1 0.500 2 ==> 1
+ node_20 --> node_19 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ 13 1 0.500 1 ==> 0
+ node_19 --> node_18 11 1 0.500 1 ==> 2
+ node_18 --> node_17 8 1 1.000 1 ==> 2
+ 9 1 0.333 1 ==> 2
+ 10 1 0.500 1 ==> 2
+ node_17 --> node_16 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_18 --> H007 12 1 0.333 2 ==> 1
+ node_18 --> H011 13 1 0.500 0 ==> 1
+ node_21 --> H008 9 1 0.333 1 --> 2
+ node_22 --> H014 9 1 0.333 1 --> 2
+ 10 1 0.500 1 ==> 2
+ node_23 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 30 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #30 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 22 0 0 0
+ 20 22 0 0 1
+ 19 20 3 3 3
+ 18 19 0 0 1
+ 17 18 3 3 3
+ 16 17 2 2 2
+H010 (2) 16 1 1 1
+H001 (7) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H013 (6) 17 0 0 0
+H007 (3) 18 1 1 1
+H011 (13) 18 1 1 1
+H012 (10) 19 1 0 1
+H006 (12) 20 1 0 1
+ 21 22 1 1 1
+H008 (4) 21 1 1 1
+H014 (5) 21 1 1 1
+H009 (11) 22 1 1 1
+-------------------------------------------------------------------------
+Sum 22
+
+Tree length = 22
+Consistency index (CI) = 0.5909
+Homoplasy index (HI) = 0.4091
+CI excluding uninformative characters = 0.5500
+HI excluding uninformative characters = 0.4500
+Retention index (RI) = 0.7805
+Rescaled consistency index (RC) = 0.4612
+
+/------------------------------------------------------------------------- H002
+|
+| /--------------------- H010
+| |
+| +--------------------- H001
+| |
+| /--------16 /---------- H003
+| | +---------15
+| | | \---------- H005
+| /---------17 |
+| | | \--------------------- H000
+| | |
+| | \------------------------------- H013
+22 /--------18
+| | +------------------------------------------ H007
+| | |
+| /---------19 \------------------------------------------ H011
+| | |
++--------20 \---------------------------------------------------- H012
+| |
+| \--------------------------------------------------------------- H006
+|
+| /---------- H008
++-------------------------------------------------------------21
+| \---------- H014
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_20 --> node_19 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ 13 1 0.500 1 ==> 0
+ node_18 --> node_17 8 1 1.000 1 ==> 2
+ 9 1 0.500 1 ==> 2
+ 10 1 0.500 1 ==> 2
+ node_17 --> node_16 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_18 --> H007 12 1 0.333 2 ==> 1
+ node_18 --> H011 13 1 0.500 0 ==> 1
+ node_19 --> H012 11 1 0.333 2 --> 1
+ node_20 --> H006 11 1 0.333 2 --> 1
+ node_22 --> node_21 9 1 0.500 1 ==> 2
+ node_21 --> H008 11 1 0.333 2 ==> 1
+ node_21 --> H014 10 1 0.500 1 ==> 2
+ node_22 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 31 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #31 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 22 0 0 0
+ 21 22 0 0 1
+ 19 21 3 3 3
+ 18 19 0 0 1
+ 17 18 3 3 3
+ 16 17 2 2 2
+H010 (2) 16 1 1 1
+H001 (7) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H013 (6) 17 0 0 0
+H007 (3) 18 1 1 1
+H011 (13) 18 1 1 1
+H012 (10) 19 1 0 1
+ 20 21 1 0 1
+H008 (4) 20 1 1 1
+H006 (12) 20 0 0 0
+H014 (5) 22 2 2 2
+H009 (11) 22 1 1 1
+-------------------------------------------------------------------------
+Sum 22
+
+Tree length = 22
+Consistency index (CI) = 0.5909
+Homoplasy index (HI) = 0.4091
+CI excluding uninformative characters = 0.5500
+HI excluding uninformative characters = 0.4500
+Retention index (RI) = 0.7805
+Rescaled consistency index (RC) = 0.4612
+
+/------------------------------------------------------------------------- H002
+|
+| /--------------------- H010
+| |
+| +--------------------- H001
+| |
+| /--------16 /---------- H003
+| | +---------15
+| | | \---------- H005
+| /---------17 |
+| | | \--------------------- H000
+| | |
+| | \------------------------------- H013
+22 /--------18
+| | +------------------------------------------ H007
+| | |
+| /---------19 \------------------------------------------ H011
+| | |
+| | \---------------------------------------------------- H012
++--------21
+| | /---------- H008
+| \---------------------------------------------------20
+| \---------- H006
+|
++------------------------------------------------------------------------- H014
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_19 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ 13 1 0.500 1 ==> 0
+ node_18 --> node_17 8 1 1.000 1 ==> 2
+ 9 1 0.333 1 ==> 2
+ 10 1 0.500 1 ==> 2
+ node_17 --> node_16 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_18 --> H007 12 1 0.333 2 ==> 1
+ node_18 --> H011 13 1 0.500 0 ==> 1
+ node_19 --> H012 11 1 0.500 2 --> 1
+ node_21 --> node_20 11 1 0.500 2 --> 1
+ node_20 --> H008 9 1 0.333 1 ==> 2
+ node_22 --> H014 9 1 0.333 1 ==> 2
+ 10 1 0.500 1 ==> 2
+ node_22 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 32 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #32 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 23 0 0 0
+ 22 23 0 0 1
+ 20 22 3 3 3
+ 19 20 0 0 1
+ 18 19 2 2 2
+ 17 18 1 1 1
+ 16 17 2 2 2
+H010 (2) 16 1 1 1
+H001 (7) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H013 (6) 17 0 0 0
+H014 (5) 18 2 2 2
+H007 (3) 19 1 1 1
+H011 (13) 19 1 1 1
+H012 (10) 20 1 0 1
+ 21 22 1 0 1
+H008 (4) 21 1 1 1
+H006 (12) 21 0 0 0
+H009 (11) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 22
+
+Tree length = 22
+Consistency index (CI) = 0.5909
+Homoplasy index (HI) = 0.4091
+CI excluding uninformative characters = 0.5500
+HI excluding uninformative characters = 0.4500
+Retention index (RI) = 0.7805
+Rescaled consistency index (RC) = 0.4612
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------ H010
+| |
+| +------------------ H001
+| |
+| /-------16 /--------- H003
+| | +-------15
+| | | \--------- H005
+| /--------17 |
+| | | \------------------ H000
+| | |
+| /-------18 \--------------------------- H013
+23 | |
+| | \------------------------------------- H014
+| /-------19
+| | +---------------------------------------------- H007
+| | |
+| /-------20 \---------------------------------------------- H011
+| | |
+| | \------------------------------------------------------- H012
++-------22
+| | /--------- H008
+| \-----------------------------------------------------21
+| \--------- H006
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_20 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ 13 1 0.500 1 ==> 0
+ node_19 --> node_18 9 1 0.500 1 ==> 2
+ 10 1 1.000 1 ==> 2
+ node_18 --> node_17 8 1 1.000 1 ==> 2
+ node_17 --> node_16 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_18 --> H014 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_19 --> H007 12 1 0.333 2 ==> 1
+ node_19 --> H011 13 1 0.500 0 ==> 1
+ node_20 --> H012 11 1 0.500 2 --> 1
+ node_22 --> node_21 11 1 0.500 2 --> 1
+ node_21 --> H008 9 1 0.500 1 ==> 2
+ node_23 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 33 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #33 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 24 0 0 0
+ 23 24 0 0 1
+ 20 23 0 0 1
+ 19 20 1 1 1
+ 18 19 1 1 3
+ 17 18 3 3 4
+ 16 17 2 2 3
+H010 (2) 16 1 1 1
+H001 (7) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 1 0 1
+H013 (6) 17 0 0 0
+H014 (5) 18 0 0 0
+H008 (4) 19 1 0 1
+H006 (12) 20 1 0 1
+ 22 23 2 2 3
+ 21 22 0 0 1
+H007 (3) 21 2 1 2
+H011 (13) 21 0 0 1
+H012 (10) 22 2 0 2
+H009 (11) 24 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------ H010
+| |
+| +------------------ H001
+| |
+| /-------16 /--------- H003
+| | +-------15
+| | | \--------- H005
+| /--------17 |
+| | | \------------------ H000
+| | |
+| /-------18 \--------------------------- H013
+24 | |
+| /-------19 \------------------------------------- H014
+| | |
+| /-------20 \---------------------------------------------- H008
+| | |
+| | \------------------------------------------------------- H006
+| |
++-------23 /--------- H007
+| | /-------21
+| | | \--------- H011
+| \--------------------------------------------22
+| \------------------ H012
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_20 --> node_19 9 1 1.000 1 ==> 2
+ node_19 --> node_18 10 1 1.000 1 ==> 2
+ node_18 --> node_17 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ 8 1 1.000 1 ==> 2
+ node_17 --> node_16 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_16 --> H000 13 1 0.333 1 --> 0
+ node_19 --> H008 11 1 0.333 2 --> 1
+ node_20 --> H006 11 1 0.333 2 --> 1
+ node_23 --> node_22 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_21 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_22 --> H012 11 1 0.333 2 --> 1
+ 13 1 0.333 1 --> 0
+ node_24 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 34 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #34 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 24 0 0 0
+ 23 24 0 0 1
+ 20 23 0 0 1
+ 19 20 1 1 1
+ 18 19 1 1 3
+ 17 18 3 3 4
+ 16 17 2 2 3
+H010 (2) 16 1 1 1
+H013 (6) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 1 0 1
+H001 (7) 17 0 0 0
+H014 (5) 18 0 0 0
+H008 (4) 19 1 0 1
+H006 (12) 20 1 0 1
+ 22 23 2 2 3
+ 21 22 0 0 1
+H007 (3) 21 2 1 2
+H011 (13) 21 0 0 1
+H012 (10) 22 2 0 2
+H009 (11) 24 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------ H010
+| |
+| +------------------ H013
+| |
+| /-------16 /--------- H003
+| | +-------15
+| | | \--------- H005
+| /--------17 |
+| | | \------------------ H000
+| | |
+| /-------18 \--------------------------- H001
+24 | |
+| /-------19 \------------------------------------- H014
+| | |
+| /-------20 \---------------------------------------------- H008
+| | |
+| | \------------------------------------------------------- H006
+| |
++-------23 /--------- H007
+| | /-------21
+| | | \--------- H011
+| \--------------------------------------------22
+| \------------------ H012
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_20 --> node_19 9 1 1.000 1 ==> 2
+ node_19 --> node_18 10 1 1.000 1 ==> 2
+ node_18 --> node_17 6 1 0.500 1 ==> 2
+ 7 1 0.500 1 ==> 2
+ 8 1 1.000 1 ==> 2
+ node_17 --> node_16 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_16 --> H000 13 1 0.333 1 --> 0
+ node_19 --> H008 11 1 0.333 2 --> 1
+ node_20 --> H006 11 1 0.333 2 --> 1
+ node_23 --> node_22 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_21 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_22 --> H012 11 1 0.333 2 --> 1
+ 13 1 0.333 1 --> 0
+ node_24 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 35 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #35 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 22 0 0 0
+ 20 22 0 0 1
+ 19 20 3 3 3
+ 18 19 0 0 1
+ 17 18 3 3 3
+ 16 17 2 2 2
+H010 (2) 16 1 1 1
+H001 (7) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H013 (6) 17 0 0 0
+H012 (10) 18 1 1 1
+H011 (13) 18 1 1 1
+H007 (3) 19 1 0 1
+H009 (11) 20 1 0 1
+ 21 22 1 1 1
+H008 (4) 21 1 1 1
+H014 (5) 21 1 1 1
+H006 (12) 22 1 1 1
+-------------------------------------------------------------------------
+Sum 22
+
+Tree length = 22
+Consistency index (CI) = 0.5909
+Homoplasy index (HI) = 0.4091
+CI excluding uninformative characters = 0.5500
+HI excluding uninformative characters = 0.4500
+Retention index (RI) = 0.7805
+Rescaled consistency index (RC) = 0.4612
+
+/------------------------------------------------------------------------- H002
+|
+| /--------------------- H010
+| |
+| +--------------------- H001
+| |
+| /--------16 /---------- H003
+| | +---------15
+| | | \---------- H005
+| /---------17 |
+| | | \--------------------- H000
+| | |
+| | \------------------------------- H013
+22 /--------18
+| | +------------------------------------------ H012
+| | |
+| /---------19 \------------------------------------------ H011
+| | |
++--------20 \---------------------------------------------------- H007
+| |
+| \--------------------------------------------------------------- H009
+|
+| /---------- H008
++-------------------------------------------------------------21
+| \---------- H014
+|
+\------------------------------------------------------------------------- H006
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_20 --> node_19 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ 13 1 0.500 1 ==> 0
+ node_18 --> node_17 8 1 1.000 1 ==> 2
+ 9 1 0.500 1 ==> 2
+ 10 1 0.500 1 ==> 2
+ node_17 --> node_16 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_18 --> H012 11 1 0.333 2 ==> 1
+ node_18 --> H011 13 1 0.500 0 ==> 1
+ node_19 --> H007 12 1 0.333 2 --> 1
+ node_20 --> H009 12 1 0.333 2 --> 1
+ node_22 --> node_21 9 1 0.500 1 ==> 2
+ node_21 --> H008 11 1 0.333 2 ==> 1
+ node_21 --> H014 10 1 0.500 1 ==> 2
+ node_22 --> H006 11 1 0.333 2 ==> 1
+
+Tree number 36 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #36 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 22 0 0 0
+ 21 22 0 0 1
+ 19 21 3 3 3
+ 17 19 3 2 3
+ 16 17 2 2 2
+H010 (2) 16 1 1 1
+H001 (7) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H013 (6) 17 0 0 0
+ 18 19 0 0 1
+H007 (3) 18 1 1 1
+H012 (10) 18 1 1 1
+H011 (13) 18 1 1 1
+ 20 21 1 1 1
+H008 (4) 20 1 0 1
+H006 (12) 20 0 0 1
+H014 (5) 21 2 1 2
+H009 (11) 22 1 1 1
+-------------------------------------------------------------------------
+Sum 22
+
+Tree length = 22
+Consistency index (CI) = 0.5909
+Homoplasy index (HI) = 0.4091
+CI excluding uninformative characters = 0.5500
+HI excluding uninformative characters = 0.4500
+Retention index (RI) = 0.7805
+Rescaled consistency index (RC) = 0.4612
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------------ H010
+| |
+| +------------------------ H001
+| |
+| /----------16 /------------ H003
+| | +----------15
+| | | \------------ H005
+| /-----------17 |
+| | | \------------------------ H000
+| | |
+| | \------------------------------------ H013
+22 /----------19
+| | | /------------ H007
+| | | |
+| | \-----------------------------------18------------ H012
+| | |
+| | \------------ H011
++----------21
+| | /------------ H008
+| +-----------------------------------------------20
+| | \------------ H006
+| |
+| \------------------------------------------------------------- H014
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_19 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ 13 1 0.500 1 ==> 0
+ node_19 --> node_17 8 1 1.000 1 ==> 2
+ 9 1 0.333 1 --> 2
+ 10 1 0.500 1 ==> 2
+ node_17 --> node_16 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_18 --> H007 12 1 0.333 2 ==> 1
+ node_18 --> H012 11 1 0.500 2 ==> 1
+ node_18 --> H011 13 1 0.500 0 ==> 1
+ node_21 --> node_20 11 1 0.500 2 ==> 1
+ node_20 --> H008 9 1 0.333 1 --> 2
+ node_21 --> H014 9 1 0.333 1 --> 2
+ 10 1 0.500 1 ==> 2
+ node_22 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 37 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #37 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 21 0 0 0
+ 19 21 3 3 3
+ 18 19 2 2 2
+ 17 18 1 1 1
+ 16 17 2 2 2
+H010 (2) 16 1 1 1
+H001 (7) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H013 (6) 17 0 0 0
+H014 (5) 18 2 2 2
+H007 (3) 19 1 1 1
+H012 (10) 19 1 1 1
+H011 (13) 19 1 1 1
+ 20 21 1 1 1
+H008 (4) 20 1 1 1
+H006 (12) 20 0 0 0
+H009 (11) 21 1 1 1
+-------------------------------------------------------------------------
+Sum 22
+
+Tree length = 22
+Consistency index (CI) = 0.5909
+Homoplasy index (HI) = 0.4091
+CI excluding uninformative characters = 0.5500
+HI excluding uninformative characters = 0.4500
+Retention index (RI) = 0.7805
+Rescaled consistency index (RC) = 0.4612
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------------ H010
+| |
+| +------------------------ H001
+| |
+| /----------16 /------------ H003
+| | +----------15
+| | | \------------ H005
+| /-----------17 |
+| | | \------------------------ H000
+| | |
+| /----------18 \------------------------------------ H013
+21 | |
+| | \------------------------------------------------- H014
+| |
++----------19------------------------------------------------------------- H007
+| |
+| +------------------------------------------------------------- H012
+| |
+| \------------------------------------------------------------- H011
+|
+| /------------ H008
++-----------------------------------------------------------20
+| \------------ H006
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_19 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ 13 1 0.500 1 ==> 0
+ node_19 --> node_18 9 1 0.500 1 ==> 2
+ 10 1 1.000 1 ==> 2
+ node_18 --> node_17 8 1 1.000 1 ==> 2
+ node_17 --> node_16 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_18 --> H014 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_19 --> H007 12 1 0.333 2 ==> 1
+ node_19 --> H012 11 1 0.500 2 ==> 1
+ node_19 --> H011 13 1 0.500 0 ==> 1
+ node_21 --> node_20 11 1 0.500 2 ==> 1
+ node_20 --> H008 9 1 0.500 1 ==> 2
+ node_21 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 38 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #38 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 22 0 0 0
+ 21 22 1 1 1
+ 20 21 3 3 3
+ 19 20 1 1 1
+ 18 19 2 2 2
+ 17 18 1 1 1
+ 16 17 2 2 2
+H010 (2) 16 1 1 1
+H001 (7) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H013 (6) 17 0 0 0
+H014 (5) 18 2 2 2
+H007 (3) 19 1 1 1
+H011 (13) 19 1 1 1
+H012 (10) 20 0 0 0
+H008 (4) 21 1 1 1
+H006 (12) 21 0 0 0
+H009 (11) 22 1 1 1
+-------------------------------------------------------------------------
+Sum 22
+
+Tree length = 22
+Consistency index (CI) = 0.5909
+Homoplasy index (HI) = 0.4091
+CI excluding uninformative characters = 0.5500
+HI excluding uninformative characters = 0.4500
+Retention index (RI) = 0.7805
+Rescaled consistency index (RC) = 0.4612
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------ H010
+| |
+| +------------------ H001
+| |
+| /-------16 /--------- H003
+| | +-------15
+| | | \--------- H005
+| /--------17 |
+| | | \------------------ H000
+| | |
+| /-------18 \--------------------------- H013
+22 | |
+| | \------------------------------------- H014
+| /-------19
+| | +---------------------------------------------- H007
+| | |
+| /-------20 \---------------------------------------------- H011
+| | |
+| | \------------------------------------------------------- H012
++-------21
+| +---------------------------------------------------------------- H008
+| |
+| \---------------------------------------------------------------- H006
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_21 11 1 0.500 2 ==> 1
+ node_21 --> node_20 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ 13 1 0.500 1 ==> 0
+ node_20 --> node_19 11 1 0.500 1 ==> 2
+ node_19 --> node_18 9 1 0.500 1 ==> 2
+ 10 1 1.000 1 ==> 2
+ node_18 --> node_17 8 1 1.000 1 ==> 2
+ node_17 --> node_16 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_18 --> H014 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_19 --> H007 12 1 0.333 2 ==> 1
+ node_19 --> H011 13 1 0.500 0 ==> 1
+ node_21 --> H008 9 1 0.500 1 ==> 2
+ node_22 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 39 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #39 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 23 0 0 0
+ 21 23 0 0 1
+ 20 21 3 3 3
+ 19 20 0 0 1
+ 18 19 2 2 2
+ 17 18 1 1 1
+ 16 17 2 2 2
+H010 (2) 16 1 1 1
+H001 (7) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H013 (6) 17 0 0 0
+H014 (5) 18 2 2 2
+H012 (10) 19 1 1 1
+H011 (13) 19 1 1 1
+H007 (3) 20 1 0 1
+H009 (11) 21 1 0 1
+ 22 23 1 1 1
+H008 (4) 22 1 1 1
+H006 (12) 22 0 0 0
+-------------------------------------------------------------------------
+Sum 22
+
+Tree length = 22
+Consistency index (CI) = 0.5909
+Homoplasy index (HI) = 0.4091
+CI excluding uninformative characters = 0.5500
+HI excluding uninformative characters = 0.4500
+Retention index (RI) = 0.7805
+Rescaled consistency index (RC) = 0.4612
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------ H010
+| |
+| +------------------ H001
+| |
+| /-------16 /--------- H003
+| | +-------15
+| | | \--------- H005
+| /--------17 |
+| | | \------------------ H000
+| | |
+| /-------18 \--------------------------- H013
+23 | |
+| | \------------------------------------- H014
+| /-------19
+| | +---------------------------------------------- H012
+| | |
+| /-------20 \---------------------------------------------- H011
+| | |
++-------21 \------------------------------------------------------- H007
+| |
+| \---------------------------------------------------------------- H009
+|
+| /--------- H008
+\--------------------------------------------------------------22
+ \--------- H006
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_20 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ 13 1 0.500 1 ==> 0
+ node_19 --> node_18 9 1 0.500 1 ==> 2
+ 10 1 1.000 1 ==> 2
+ node_18 --> node_17 8 1 1.000 1 ==> 2
+ node_17 --> node_16 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_18 --> H014 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_19 --> H012 11 1 0.500 2 ==> 1
+ node_19 --> H011 13 1 0.500 0 ==> 1
+ node_20 --> H007 12 1 0.333 2 --> 1
+ node_21 --> H009 12 1 0.333 2 --> 1
+ node_23 --> node_22 11 1 0.500 2 ==> 1
+ node_22 --> H008 9 1 0.500 1 ==> 2
+
+Tree number 40 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #40 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 23 0 0 0
+ 22 23 0 0 1
+ 19 22 1 1 1
+ 18 19 1 1 3
+ 17 18 3 3 4
+ 16 17 2 2 3
+H010 (2) 16 1 1 1
+H001 (7) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 1 0 1
+H013 (6) 17 0 0 0
+H014 (5) 18 0 0 0
+H008 (4) 19 1 0 1
+ 21 22 2 2 3
+ 20 21 0 0 1
+H007 (3) 20 2 1 2
+H011 (13) 20 0 0 1
+H012 (10) 21 2 0 2
+H006 (12) 22 1 0 1
+H009 (11) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+/------------------------------------------------------------------------- H002
+|
+| /--------------------- H010
+| |
+| +--------------------- H001
+| |
+| /--------16 /---------- H003
+| | +---------15
+| | | \---------- H005
+| /---------17 |
+| | | \--------------------- H000
+| | |
+| /--------18 \------------------------------- H013
+23 | |
+| /---------19 \------------------------------------------ H014
+| | |
+| | \---------------------------------------------------- H008
+| |
+| | /---------- H007
++--------22 /---------20
+| | | \---------- H011
+| +----------------------------------------21
+| | \--------------------- H012
+| |
+| \--------------------------------------------------------------- H006
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_19 9 1 1.000 1 ==> 2
+ node_19 --> node_18 10 1 1.000 1 ==> 2
+ node_18 --> node_17 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ 8 1 1.000 1 ==> 2
+ node_17 --> node_16 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_16 --> H000 13 1 0.333 1 --> 0
+ node_19 --> H008 11 1 0.333 2 --> 1
+ node_22 --> node_21 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_20 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_21 --> H012 11 1 0.333 2 --> 1
+ 13 1 0.333 1 --> 0
+ node_22 --> H006 11 1 0.333 2 --> 1
+ node_23 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 41 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #41 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 24 0 0 0
+ 20 24 0 0 1
+ 19 20 1 1 1
+ 18 19 1 1 3
+ 17 18 3 3 4
+ 16 17 2 2 3
+H010 (2) 16 1 1 1
+H001 (7) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 1 0 1
+H013 (6) 17 0 0 0
+H014 (5) 18 0 0 0
+H008 (4) 19 1 0 1
+H006 (12) 20 1 0 1
+ 23 24 0 0 1
+ 22 23 2 2 3
+H007 (3) 22 2 0 2
+ 21 22 0 0 1
+H012 (10) 21 2 1 2
+H011 (13) 21 0 0 1
+H009 (11) 23 1 0 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+/------------------------------------------------------------------------- H002
+|
+| /--------------------- H010
+| |
+| +--------------------- H001
+| |
+| /--------16 /---------- H003
+| | +---------15
+| | | \---------- H005
+| /---------17 |
+| | | \--------------------- H000
+| | |
+24 /--------18 \------------------------------- H013
+| | |
+| /---------19 \------------------------------------------ H014
+| | |
++--------20 \---------------------------------------------------- H008
+| |
+| \--------------------------------------------------------------- H006
+|
+| /--------------------- H007
+| |
+| /--------22 /---------- H012
+| | \---------21
+\----------------------------------------23 \---------- H011
+ |
+ \------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_20 --> node_19 9 1 1.000 1 ==> 2
+ node_19 --> node_18 10 1 1.000 1 ==> 2
+ node_18 --> node_17 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ 8 1 1.000 1 ==> 2
+ node_17 --> node_16 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_16 --> H000 13 1 0.333 1 --> 0
+ node_19 --> H008 11 1 0.333 2 --> 1
+ node_20 --> H006 11 1 0.333 2 --> 1
+ node_23 --> node_22 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_22 --> H007 12 1 0.333 2 --> 1
+ 13 1 0.333 1 --> 0
+ node_21 --> H012 11 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_23 --> H009 12 1 0.333 2 --> 1
+
+Tree number 42 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #42 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 24 0 0 0
+ 23 24 0 0 1
+ 19 23 1 1 1
+ 18 19 1 1 3
+ 17 18 3 3 4
+ 16 17 2 2 3
+H010 (2) 16 1 1 1
+H001 (7) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 1 0 1
+H013 (6) 17 0 0 0
+H014 (5) 18 0 0 0
+H008 (4) 19 1 0 1
+ 22 23 0 0 1
+ 21 22 2 2 3
+ 20 21 0 0 1
+H007 (3) 20 2 1 2
+H011 (13) 20 0 0 1
+H012 (10) 21 2 0 2
+H006 (12) 22 1 0 1
+H009 (11) 24 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+/------------------------------------------------------------------------- H002
+|
+| /--------------------- H010
+| |
+| +--------------------- H001
+| |
+| /--------16 /---------- H003
+| | +---------15
+| | | \---------- H005
+| /---------17 |
+| | | \--------------------- H000
+| | |
+| /--------18 \------------------------------- H013
+24 | |
+| /---------19 \------------------------------------------ H014
+| | |
+| | \---------------------------------------------------- H008
+| |
+| | /---------- H007
++--------23 /---------20
+| | | \---------- H011
+| | /--------21
+| | | \--------------------- H012
+| \------------------------------22
+| \------------------------------- H006
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_19 9 1 1.000 1 ==> 2
+ node_19 --> node_18 10 1 1.000 1 ==> 2
+ node_18 --> node_17 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ 8 1 1.000 1 ==> 2
+ node_17 --> node_16 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_16 --> H000 13 1 0.333 1 --> 0
+ node_19 --> H008 11 1 0.333 2 --> 1
+ node_22 --> node_21 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_20 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_21 --> H012 11 1 0.333 2 --> 1
+ 13 1 0.333 1 --> 0
+ node_22 --> H006 11 1 0.333 2 --> 1
+ node_24 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 43 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #43 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 23 0 0 0
+ 22 23 0 0 1
+ 20 22 0 0 3
+ 19 20 3 2 3
+ 17 19 3 1 3
+ 16 17 2 2 2
+H010 (2) 16 1 1 1
+H001 (7) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H013 (6) 17 0 0 0
+ 18 19 0 0 2
+H007 (3) 18 1 1 1
+H012 (10) 18 1 1 1
+H011 (13) 18 1 1 1
+H014 (5) 20 2 0 2
+ 21 22 1 1 1
+H008 (4) 21 1 0 1
+H006 (12) 21 0 0 1
+H009 (11) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 22
+
+Tree length = 22
+Consistency index (CI) = 0.5909
+Homoplasy index (HI) = 0.4091
+CI excluding uninformative characters = 0.5500
+HI excluding uninformative characters = 0.4500
+Retention index (RI) = 0.7805
+Rescaled consistency index (RC) = 0.4612
+
+/------------------------------------------------------------------------- H002
+|
+| /--------------------- H010
+| |
+| +--------------------- H001
+| |
+| /--------16 /---------- H003
+| | +---------15
+| | | \---------- H005
+| /---------17 |
+| | | \--------------------- H000
+| | |
+| | \------------------------------- H013
+23 /--------19
+| | | /---------- H007
+| | | |
+| | \------------------------------18---------- H012
+| /---------20 |
+| | | \---------- H011
+| | |
++--------22 \---------------------------------------------------- H014
+| |
+| | /---------- H008
+| \---------------------------------------------------21
+| \---------- H006
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_20 --> node_19 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ 13 1 0.500 1 --> 0
+ node_19 --> node_17 8 1 1.000 1 ==> 2
+ 9 1 0.333 1 --> 2
+ 10 1 0.500 1 --> 2
+ node_17 --> node_16 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_18 --> H007 12 1 0.333 2 ==> 1
+ node_18 --> H012 11 1 0.500 2 ==> 1
+ node_18 --> H011 13 1 0.500 0 ==> 1
+ node_20 --> H014 9 1 0.333 1 --> 2
+ 10 1 0.500 1 --> 2
+ node_22 --> node_21 11 1 0.500 2 ==> 1
+ node_21 --> H008 9 1 0.333 1 --> 2
+ node_23 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 44 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #44 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 22 0 0 0
+ 20 22 0 0 1
+ 19 20 3 3 3
+ 18 19 0 0 1
+ 17 18 3 3 3
+ 16 17 2 2 2
+H010 (2) 16 1 1 1
+H001 (7) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H013 (6) 17 0 0 0
+H012 (10) 18 1 1 1
+H011 (13) 18 1 1 1
+H007 (3) 19 1 0 1
+H009 (11) 20 1 0 1
+ 21 22 1 1 1
+H008 (4) 21 1 1 1
+H006 (12) 21 0 0 0
+H014 (5) 22 2 2 2
+-------------------------------------------------------------------------
+Sum 22
+
+Tree length = 22
+Consistency index (CI) = 0.5909
+Homoplasy index (HI) = 0.4091
+CI excluding uninformative characters = 0.5500
+HI excluding uninformative characters = 0.4500
+Retention index (RI) = 0.7805
+Rescaled consistency index (RC) = 0.4612
+
+/------------------------------------------------------------------------- H002
+|
+| /--------------------- H010
+| |
+| +--------------------- H001
+| |
+| /--------16 /---------- H003
+| | +---------15
+| | | \---------- H005
+| /---------17 |
+| | | \--------------------- H000
+| | |
+| | \------------------------------- H013
+22 /--------18
+| | +------------------------------------------ H012
+| | |
+| /---------19 \------------------------------------------ H011
+| | |
++--------20 \---------------------------------------------------- H007
+| |
+| \--------------------------------------------------------------- H009
+|
+| /---------- H008
++-------------------------------------------------------------21
+| \---------- H006
+|
+\------------------------------------------------------------------------- H014
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_20 --> node_19 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ 13 1 0.500 1 ==> 0
+ node_18 --> node_17 8 1 1.000 1 ==> 2
+ 9 1 0.333 1 ==> 2
+ 10 1 0.500 1 ==> 2
+ node_17 --> node_16 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_18 --> H012 11 1 0.500 2 ==> 1
+ node_18 --> H011 13 1 0.500 0 ==> 1
+ node_19 --> H007 12 1 0.333 2 --> 1
+ node_20 --> H009 12 1 0.333 2 --> 1
+ node_22 --> node_21 11 1 0.500 2 ==> 1
+ node_21 --> H008 9 1 0.333 1 ==> 2
+ node_22 --> H014 9 1 0.333 1 ==> 2
+ 10 1 0.500 1 ==> 2
+
+Tree number 45 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #45 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 23 0 0 0
+ 20 23 0 0 1
+ 19 20 3 3 3
+ 18 19 0 0 1
+ 17 18 3 3 3
+ 16 17 2 2 2
+H010 (2) 16 1 1 1
+H001 (7) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H013 (6) 17 0 0 0
+H012 (10) 18 1 1 1
+H011 (13) 18 1 1 1
+H007 (3) 19 1 0 1
+H009 (11) 20 1 0 1
+ 22 23 0 0 1
+ 21 22 1 1 1
+H008 (4) 21 1 0 1
+H006 (12) 21 0 0 1
+H014 (5) 22 2 1 2
+-------------------------------------------------------------------------
+Sum 22
+
+Tree length = 22
+Consistency index (CI) = 0.5909
+Homoplasy index (HI) = 0.4091
+CI excluding uninformative characters = 0.5500
+HI excluding uninformative characters = 0.4500
+Retention index (RI) = 0.7805
+Rescaled consistency index (RC) = 0.4612
+
+/------------------------------------------------------------------------- H002
+|
+| /--------------------- H010
+| |
+| +--------------------- H001
+| |
+| /--------16 /---------- H003
+| | +---------15
+| | | \---------- H005
+| /---------17 |
+| | | \--------------------- H000
+| | |
+| | \------------------------------- H013
+23 /--------18
+| | +------------------------------------------ H012
+| | |
+| /---------19 \------------------------------------------ H011
+| | |
++--------20 \---------------------------------------------------- H007
+| |
+| \--------------------------------------------------------------- H009
+|
+| /---------- H008
+| /---------21
+| | \---------- H006
+\--------------------------------------------------22
+ \--------------------- H014
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_20 --> node_19 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ 13 1 0.500 1 ==> 0
+ node_18 --> node_17 8 1 1.000 1 ==> 2
+ 9 1 0.333 1 ==> 2
+ 10 1 0.500 1 ==> 2
+ node_17 --> node_16 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_18 --> H012 11 1 0.500 2 ==> 1
+ node_18 --> H011 13 1 0.500 0 ==> 1
+ node_19 --> H007 12 1 0.333 2 --> 1
+ node_20 --> H009 12 1 0.333 2 --> 1
+ node_22 --> node_21 11 1 0.500 2 ==> 1
+ node_21 --> H008 9 1 0.333 1 --> 2
+ node_22 --> H014 9 1 0.333 1 --> 2
+ 10 1 0.500 1 ==> 2
+
+Tree number 46 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #46 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 24 0 0 0
+ 20 24 0 0 1
+ 19 20 1 1 1
+ 18 19 1 1 3
+ 17 18 3 3 4
+ 16 17 2 2 3
+H010 (2) 16 1 1 1
+H013 (6) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 1 0 1
+H001 (7) 17 0 0 0
+H014 (5) 18 0 0 0
+H008 (4) 19 1 0 1
+H006 (12) 20 1 0 1
+ 23 24 0 0 1
+ 22 23 2 2 3
+H007 (3) 22 2 0 2
+ 21 22 0 0 1
+H012 (10) 21 2 1 2
+H011 (13) 21 0 0 1
+H009 (11) 23 1 0 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+/------------------------------------------------------------------------- H002
+|
+| /--------------------- H010
+| |
+| +--------------------- H013
+| |
+| /--------16 /---------- H003
+| | +---------15
+| | | \---------- H005
+| /---------17 |
+| | | \--------------------- H000
+| | |
+24 /--------18 \------------------------------- H001
+| | |
+| /---------19 \------------------------------------------ H014
+| | |
++--------20 \---------------------------------------------------- H008
+| |
+| \--------------------------------------------------------------- H006
+|
+| /--------------------- H007
+| |
+| /--------22 /---------- H012
+| | \---------21
+\----------------------------------------23 \---------- H011
+ |
+ \------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_20 --> node_19 9 1 1.000 1 ==> 2
+ node_19 --> node_18 10 1 1.000 1 ==> 2
+ node_18 --> node_17 6 1 0.500 1 ==> 2
+ 7 1 0.500 1 ==> 2
+ 8 1 1.000 1 ==> 2
+ node_17 --> node_16 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_16 --> H000 13 1 0.333 1 --> 0
+ node_19 --> H008 11 1 0.333 2 --> 1
+ node_20 --> H006 11 1 0.333 2 --> 1
+ node_23 --> node_22 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_22 --> H007 12 1 0.333 2 --> 1
+ 13 1 0.333 1 --> 0
+ node_21 --> H012 11 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_23 --> H009 12 1 0.333 2 --> 1
+
+Tree number 47 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #47 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 21 0 0 0
+ 20 21 1 1 1
+ 19 20 3 3 3
+ 18 19 1 1 1
+ 17 18 3 3 3
+ 16 17 2 2 2
+H010 (2) 16 1 1 1
+H001 (7) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H013 (6) 17 0 0 0
+H007 (3) 18 1 1 1
+H011 (13) 18 1 1 1
+H012 (10) 19 0 0 0
+H008 (4) 20 1 1 1
+H006 (12) 20 0 0 0
+H014 (5) 21 2 2 2
+H009 (11) 21 1 1 1
+-------------------------------------------------------------------------
+Sum 22
+
+Tree length = 22
+Consistency index (CI) = 0.5909
+Homoplasy index (HI) = 0.4091
+CI excluding uninformative characters = 0.5500
+HI excluding uninformative characters = 0.4500
+Retention index (RI) = 0.7805
+Rescaled consistency index (RC) = 0.4612
+
+/------------------------------------------------------------------------- H002
+|
+| /--------------------- H010
+| |
+| +--------------------- H001
+| |
+| /--------16 /---------- H003
+| | +---------15
+| | | \---------- H005
+| /---------17 |
+| | | \--------------------- H000
+| | |
+| | \------------------------------- H013
+21 /--------18
+| | +------------------------------------------ H007
+| | |
+| /---------19 \------------------------------------------ H011
+| | |
+| | \---------------------------------------------------- H012
++--------20
+| +--------------------------------------------------------------- H008
+| |
+| \--------------------------------------------------------------- H006
+|
++------------------------------------------------------------------------- H014
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_20 11 1 0.500 2 ==> 1
+ node_20 --> node_19 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ 13 1 0.500 1 ==> 0
+ node_19 --> node_18 11 1 0.500 1 ==> 2
+ node_18 --> node_17 8 1 1.000 1 ==> 2
+ 9 1 0.333 1 ==> 2
+ 10 1 0.500 1 ==> 2
+ node_17 --> node_16 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H001 1 1 0.500 2 ==> 1
+ 2 1 0.500 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_18 --> H007 12 1 0.333 2 ==> 1
+ node_18 --> H011 13 1 0.500 0 ==> 1
+ node_20 --> H008 9 1 0.333 1 ==> 2
+ node_21 --> H014 9 1 0.333 1 ==> 2
+ 10 1 0.500 1 ==> 2
+ node_21 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 48 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #48 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 22 0 0 0
+ 20 22 0 0 1
+ 18 20 2 1 3
+ 17 18 3 3 4
+ 16 17 2 2 3
+H010 (2) 16 1 1 1
+H001 (7) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 1
+H013 (6) 17 0 0 0
+H014 (5) 18 0 0 0
+ 19 20 2 1 2
+H008 (4) 19 1 0 1
+H006 (12) 19 0 0 1
+ 21 22 2 2 3
+H007 (3) 21 1 1 2
+H012 (10) 21 1 1 2
+H011 (13) 21 1 0 1
+H009 (11) 22 2 1 2
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------------ H010
+| |
+| +------------------------ H001
+| |
+| /----------16 /------------ H003
+| | +----------15
+| | | \------------ H005
+| /-----------17 |
+| | | \------------------------ H000
+| | |
+| /----------18 \------------------------------------ H013
+22 | |
+| | \------------------------------------------------- H014
++----------20
+| | /------------ H008
+| \-----------------------------------------------19
+| \------------ H006
+|
+| /------------ H007
+| |
++-----------------------------------------------------------21------------ H012
+| |
+| \------------ H011
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_20 --> node_18 9 1 0.500 1 --> 2
+ 10 1 1.000 1 ==> 2
+ node_18 --> node_17 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ 8 1 1.000 1 ==> 2
+ node_17 --> node_16 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_20 --> node_19 11 1 0.500 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_19 --> H008 9 1 0.500 1 --> 2
+ node_22 --> node_21 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_21 --> H007 12 1 0.333 2 ==> 1
+ node_21 --> H012 11 1 0.500 2 ==> 1
+ node_21 --> H011 13 1 0.333 0 --> 1
+ node_22 --> H009 12 1 0.333 2 ==> 1
+ 13 1 0.333 0 --> 1
+
+Tree number 49 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #49 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 22 0 0 0
+ 20 22 0 0 1
+ 18 20 2 1 3
+ 17 18 3 3 4
+ 16 17 2 2 3
+H010 (2) 16 1 1 1
+H013 (6) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 1
+H001 (7) 17 0 0 0
+H014 (5) 18 0 0 0
+ 19 20 2 1 2
+H008 (4) 19 1 0 1
+H006 (12) 19 0 0 1
+ 21 22 2 2 3
+H007 (3) 21 1 1 2
+H012 (10) 21 1 1 2
+H011 (13) 21 1 0 1
+H009 (11) 22 2 1 2
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------------ H010
+| |
+| +------------------------ H013
+| |
+| /----------16 /------------ H003
+| | +----------15
+| | | \------------ H005
+| /-----------17 |
+| | | \------------------------ H000
+| | |
+| /----------18 \------------------------------------ H001
+22 | |
+| | \------------------------------------------------- H014
++----------20
+| | /------------ H008
+| \-----------------------------------------------19
+| \------------ H006
+|
+| /------------ H007
+| |
++-----------------------------------------------------------21------------ H012
+| |
+| \------------ H011
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_20 --> node_18 9 1 0.500 1 --> 2
+ 10 1 1.000 1 ==> 2
+ node_18 --> node_17 6 1 0.500 1 ==> 2
+ 7 1 0.500 1 ==> 2
+ 8 1 1.000 1 ==> 2
+ node_17 --> node_16 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_20 --> node_19 11 1 0.500 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_19 --> H008 9 1 0.500 1 --> 2
+ node_22 --> node_21 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_21 --> H007 12 1 0.333 2 ==> 1
+ node_21 --> H012 11 1 0.500 2 ==> 1
+ node_21 --> H011 13 1 0.333 0 --> 1
+ node_22 --> H009 12 1 0.333 2 ==> 1
+ 13 1 0.333 0 --> 1
+
+Tree number 50 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #50 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 24 0 0 0
+ 23 24 0 0 1
+ 19 23 1 1 1
+ 18 19 1 1 3
+ 17 18 3 3 4
+ 16 17 2 2 3
+H010 (2) 16 1 1 1
+H013 (6) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 1 0 1
+H001 (7) 17 0 0 0
+H014 (5) 18 0 0 0
+H008 (4) 19 1 0 1
+ 22 23 0 0 1
+ 21 22 2 2 3
+ 20 21 0 0 1
+H007 (3) 20 2 1 2
+H011 (13) 20 0 0 1
+H012 (10) 21 2 0 2
+H006 (12) 22 1 0 1
+H009 (11) 24 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+/------------------------------------------------------------------------- H002
+|
+| /--------------------- H010
+| |
+| +--------------------- H013
+| |
+| /--------16 /---------- H003
+| | +---------15
+| | | \---------- H005
+| /---------17 |
+| | | \--------------------- H000
+| | |
+| /--------18 \------------------------------- H001
+24 | |
+| /---------19 \------------------------------------------ H014
+| | |
+| | \---------------------------------------------------- H008
+| |
+| | /---------- H007
++--------23 /---------20
+| | | \---------- H011
+| | /--------21
+| | | \--------------------- H012
+| \------------------------------22
+| \------------------------------- H006
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_19 9 1 1.000 1 ==> 2
+ node_19 --> node_18 10 1 1.000 1 ==> 2
+ node_18 --> node_17 6 1 0.500 1 ==> 2
+ 7 1 0.500 1 ==> 2
+ 8 1 1.000 1 ==> 2
+ node_17 --> node_16 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_16 --> H000 13 1 0.333 1 --> 0
+ node_19 --> H008 11 1 0.333 2 --> 1
+ node_22 --> node_21 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_20 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_21 --> H012 11 1 0.333 2 --> 1
+ 13 1 0.333 1 --> 0
+ node_22 --> H006 11 1 0.333 2 --> 1
+ node_24 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 51 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #51 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 23 0 0 0
+ 21 23 1 1 3
+ 19 21 2 2 2
+ 18 19 1 1 3
+ 17 18 2 2 2
+ 16 17 2 0 2
+H010 (2) 16 1 1 1
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 0
+H001 (7) 17 0 0 2
+H013 (6) 18 2 0 2
+H014 (5) 19 0 0 2
+ 20 21 2 0 2
+H007 (3) 20 1 1 1
+H012 (10) 20 1 1 1
+H011 (13) 20 1 1 1
+ 22 23 1 1 1
+H008 (4) 22 1 1 1
+H006 (12) 22 0 0 0
+H009 (11) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 22
+
+Tree length = 22
+Consistency index (CI) = 0.5909
+Homoplasy index (HI) = 0.4091
+CI excluding uninformative characters = 0.5500
+HI excluding uninformative characters = 0.4500
+Retention index (RI) = 0.7805
+Rescaled consistency index (RC) = 0.4612
+
+/------------------------------------------------------------------------- H002
+|
+| /--------------------- H010
+| |
+| | /---------- H003
+| /--------16---------15
+| | | \---------- H005
+| | |
+| /---------17 \--------------------- H000
+| | |
+| /--------18 \------------------------------- H001
+| | |
+| /---------19 \------------------------------------------ H013
+23 | |
+| | \---------------------------------------------------- H014
++--------21
+| | /---------- H007
+| | |
+| \---------------------------------------------------20---------- H012
+| |
+| \---------- H011
+|
+| /---------- H008
++-------------------------------------------------------------22
+| \---------- H006
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_21 13 1 0.500 1 ==> 0
+ node_21 --> node_19 9 1 0.500 1 ==> 2
+ 10 1 1.000 1 ==> 2
+ node_19 --> node_18 8 1 1.000 1 ==> 2
+ node_18 --> node_17 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_17 --> node_16 1 1 0.333 1 --> 2
+ 2 1 0.333 1 --> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_18 --> H013 1 1 0.333 1 --> 2
+ 2 1 0.333 1 --> 2
+ node_21 --> node_20 1 1 0.333 1 --> 2
+ 2 1 0.333 1 --> 2
+ node_20 --> H007 12 1 0.333 2 ==> 1
+ node_20 --> H012 11 1 0.500 2 ==> 1
+ node_20 --> H011 13 1 0.500 0 ==> 1
+ node_23 --> node_22 11 1 0.500 2 ==> 1
+ node_22 --> H008 9 1 0.500 1 ==> 2
+ node_23 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 52 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #52 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 22 0 0 0
+ 19 22 2 2 3
+ 18 19 1 1 4
+ 17 18 2 2 3
+ 16 17 2 0 3
+H010 (2) 16 1 1 1
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 1
+H013 (6) 17 0 0 2
+H001 (7) 18 2 0 2
+H014 (5) 19 0 0 0
+ 20 22 2 2 3
+H007 (3) 20 1 1 2
+H012 (10) 20 1 1 2
+H011 (13) 20 1 0 1
+ 21 22 2 1 2
+H008 (4) 21 1 1 1
+H006 (12) 21 0 0 0
+H009 (11) 22 2 1 2
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------------ H010
+| |
+| | /------------ H003
+| /----------16----------15
+| | | \------------ H005
+| | |
+| /-----------17 \------------------------ H000
+| | |
+| /----------18 \------------------------------------ H013
+| | |
++----------19 \------------------------------------------------- H001
+22 |
+| \------------------------------------------------------------- H014
+|
+| /------------ H007
+| |
++-----------------------------------------------------------20------------ H012
+| |
+| \------------ H011
+|
+| /------------ H008
++-----------------------------------------------------------21
+| \------------ H006
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_19 9 1 0.500 1 ==> 2
+ 10 1 1.000 1 ==> 2
+ node_19 --> node_18 8 1 1.000 1 ==> 2
+ node_18 --> node_17 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_17 --> node_16 6 1 0.500 1 --> 2
+ 7 1 0.500 1 --> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_18 --> H001 6 1 0.500 1 --> 2
+ 7 1 0.500 1 --> 2
+ node_22 --> node_20 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_20 --> H007 12 1 0.333 2 ==> 1
+ node_20 --> H012 11 1 0.500 2 ==> 1
+ node_20 --> H011 13 1 0.333 0 --> 1
+ node_22 --> node_21 11 1 0.500 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_21 --> H008 9 1 0.500 1 ==> 2
+ node_22 --> H009 12 1 0.333 2 ==> 1
+ 13 1 0.333 0 --> 1
+
+Tree number 53 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #53 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 23 0 0 0
+ 21 23 0 0 1
+ 20 21 1 1 1
+ 19 20 1 1 3
+ 18 19 1 1 4
+ 17 18 2 2 3
+ 16 17 2 0 3
+H010 (2) 16 1 1 1
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 1 0 1
+H013 (6) 17 0 0 2
+H001 (7) 18 2 0 2
+H014 (5) 19 0 0 0
+H008 (4) 20 1 0 1
+H006 (12) 21 1 0 1
+ 22 23 2 2 3
+H007 (3) 22 2 1 2
+H012 (10) 22 2 1 2
+H011 (13) 22 0 0 1
+H009 (11) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------ H010
+| |
+| | /--------- H003
+| /-------16-------15
+| | | \--------- H005
+| | |
+| /--------17 \------------------ H000
+| | |
+| /-------18 \--------------------------- H013
+| | |
+| /-------19 \------------------------------------- H001
+23 | |
+| /-------20 \---------------------------------------------- H014
+| | |
++-------21 \------------------------------------------------------- H008
+| |
+| \---------------------------------------------------------------- H006
+|
+| /--------- H007
+| |
++--------------------------------------------------------------22--------- H012
+| |
+| \--------- H011
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_20 9 1 1.000 1 ==> 2
+ node_20 --> node_19 10 1 1.000 1 ==> 2
+ node_19 --> node_18 8 1 1.000 1 ==> 2
+ node_18 --> node_17 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_17 --> node_16 6 1 0.500 1 --> 2
+ 7 1 0.500 1 --> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_16 --> H000 13 1 0.333 1 --> 0
+ node_18 --> H001 6 1 0.500 1 --> 2
+ 7 1 0.500 1 --> 2
+ node_20 --> H008 11 1 0.333 2 --> 1
+ node_21 --> H006 11 1 0.333 2 --> 1
+ node_23 --> node_22 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_22 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_22 --> H012 11 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_23 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 54 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #54 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 25 0 0 0
+ 21 25 0 0 1
+ 20 21 1 1 1
+ 19 20 1 1 3
+ 18 19 1 1 4
+ 17 18 2 2 3
+ 16 17 2 0 3
+H010 (2) 16 1 1 1
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 1 0 1
+H013 (6) 17 0 0 2
+H001 (7) 18 2 0 2
+H014 (5) 19 0 0 0
+H008 (4) 20 1 0 1
+H006 (12) 21 1 0 1
+ 24 25 0 0 1
+ 23 24 2 2 3
+H007 (3) 23 2 0 2
+ 22 23 0 0 1
+H012 (10) 22 2 1 2
+H011 (13) 22 0 0 1
+H009 (11) 24 1 0 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------ H010
+| |
+| | /--------- H003
+| /-------16-------15
+| | | \--------- H005
+| | |
+| /--------17 \------------------ H000
+| | |
+| /-------18 \--------------------------- H013
+| | |
+25 /-------19 \------------------------------------- H001
+| | |
+| /-------20 \---------------------------------------------- H014
+| | |
++-------21 \------------------------------------------------------- H008
+| |
+| \---------------------------------------------------------------- H006
+|
+| /------------------ H007
+| |
+| /-------23 /--------- H012
+| | \-------22
+\--------------------------------------------24 \--------- H011
+ |
+ \--------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_20 9 1 1.000 1 ==> 2
+ node_20 --> node_19 10 1 1.000 1 ==> 2
+ node_19 --> node_18 8 1 1.000 1 ==> 2
+ node_18 --> node_17 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_17 --> node_16 6 1 0.500 1 --> 2
+ 7 1 0.500 1 --> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_16 --> H000 13 1 0.333 1 --> 0
+ node_18 --> H001 6 1 0.500 1 --> 2
+ 7 1 0.500 1 --> 2
+ node_20 --> H008 11 1 0.333 2 --> 1
+ node_21 --> H006 11 1 0.333 2 --> 1
+ node_24 --> node_23 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_23 --> H007 12 1 0.333 2 --> 1
+ 13 1 0.333 1 --> 0
+ node_22 --> H012 11 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_24 --> H009 12 1 0.333 2 --> 1
+
+Tree number 55 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #55 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 23 0 0 0
+ 21 23 0 0 1
+ 19 21 2 1 3
+ 18 19 1 1 4
+ 17 18 2 2 3
+ 16 17 2 0 3
+H010 (2) 16 1 1 1
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 1
+H013 (6) 17 0 0 2
+H001 (7) 18 2 0 2
+H014 (5) 19 0 0 0
+ 20 21 2 1 2
+H008 (4) 20 1 0 1
+H006 (12) 20 0 0 1
+ 22 23 2 2 3
+H007 (3) 22 1 1 2
+H012 (10) 22 1 1 2
+H011 (13) 22 1 0 1
+H009 (11) 23 2 1 2
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+/------------------------------------------------------------------------- H002
+|
+| /--------------------- H010
+| |
+| | /---------- H003
+| /--------16---------15
+| | | \---------- H005
+| | |
+| /---------17 \--------------------- H000
+| | |
+| /--------18 \------------------------------- H013
+| | |
+| /---------19 \------------------------------------------ H001
+23 | |
+| | \---------------------------------------------------- H014
++--------21
+| | /---------- H008
+| \---------------------------------------------------20
+| \---------- H006
+|
+| /---------- H007
+| |
++-------------------------------------------------------------22---------- H012
+| |
+| \---------- H011
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_19 9 1 0.500 1 --> 2
+ 10 1 1.000 1 ==> 2
+ node_19 --> node_18 8 1 1.000 1 ==> 2
+ node_18 --> node_17 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_17 --> node_16 6 1 0.500 1 --> 2
+ 7 1 0.500 1 --> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_18 --> H001 6 1 0.500 1 --> 2
+ 7 1 0.500 1 --> 2
+ node_21 --> node_20 11 1 0.500 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_20 --> H008 9 1 0.500 1 --> 2
+ node_23 --> node_22 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_22 --> H007 12 1 0.333 2 ==> 1
+ node_22 --> H012 11 1 0.500 2 ==> 1
+ node_22 --> H011 13 1 0.333 0 --> 1
+ node_23 --> H009 12 1 0.333 2 ==> 1
+ 13 1 0.333 0 --> 1
+
+Tree number 56 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #56 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 24 0 0 0
+ 20 24 1 1 1
+ 19 20 1 1 2
+ 18 19 1 1 4
+ 17 18 2 2 3
+ 16 17 2 0 3
+H010 (2) 16 1 1 1
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 1 0 1
+H013 (6) 17 0 0 2
+H001 (7) 18 2 0 2
+H014 (5) 19 0 0 0
+H008 (4) 20 1 1 1
+ 23 24 0 0 1
+ 22 23 2 2 3
+H007 (3) 22 2 0 2
+ 21 22 0 0 1
+H012 (10) 21 2 1 2
+H011 (13) 21 0 0 1
+H009 (11) 23 1 0 1
+H006 (12) 24 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+/------------------------------------------------------------------------- H002
+|
+| /--------------------- H010
+| |
+| | /---------- H003
+| /--------16---------15
+| | | \---------- H005
+| | |
+| /---------17 \--------------------- H000
+| | |
+| /--------18 \------------------------------- H013
+| | |
+| /---------19 \------------------------------------------ H001
+24 | |
++--------20 \---------------------------------------------------- H014
+| |
+| \--------------------------------------------------------------- H008
+|
+| /--------------------- H007
+| |
+| /--------22 /---------- H012
+| | \---------21
++----------------------------------------23 \---------- H011
+| |
+| \------------------------------- H009
+|
+\------------------------------------------------------------------------- H006
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_24 --> node_20 9 1 1.000 1 ==> 2
+ node_20 --> node_19 10 1 1.000 1 ==> 2
+ node_19 --> node_18 8 1 1.000 1 ==> 2
+ node_18 --> node_17 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_17 --> node_16 6 1 0.500 1 --> 2
+ 7 1 0.500 1 --> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_16 --> H000 13 1 0.333 1 --> 0
+ node_18 --> H001 6 1 0.500 1 --> 2
+ 7 1 0.500 1 --> 2
+ node_20 --> H008 11 1 0.333 2 ==> 1
+ node_23 --> node_22 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_22 --> H007 12 1 0.333 2 --> 1
+ 13 1 0.333 1 --> 0
+ node_21 --> H012 11 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_23 --> H009 12 1 0.333 2 --> 1
+ node_24 --> H006 11 1 0.333 2 ==> 1
+
+Tree number 57 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #57 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 24 0 0 0
+ 20 24 1 1 1
+ 19 20 1 1 2
+ 18 19 1 1 4
+ 17 18 2 2 3
+ 16 17 2 0 3
+H010 (2) 16 1 1 1
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 1 0 1
+H013 (6) 17 0 0 2
+H001 (7) 18 2 0 2
+H014 (5) 19 0 0 0
+H008 (4) 20 1 1 1
+ 23 24 0 0 1
+ 22 23 2 2 3
+ 21 22 0 0 1
+H007 (3) 21 2 1 2
+H011 (13) 21 0 0 1
+H012 (10) 22 2 0 2
+H006 (12) 23 1 0 1
+H009 (11) 24 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+/------------------------------------------------------------------------- H002
+|
+| /--------------------- H010
+| |
+| | /---------- H003
+| /--------16---------15
+| | | \---------- H005
+| | |
+| /---------17 \--------------------- H000
+| | |
+| /--------18 \------------------------------- H013
+| | |
+| /---------19 \------------------------------------------ H001
+24 | |
++--------20 \---------------------------------------------------- H014
+| |
+| \--------------------------------------------------------------- H008
+|
+| /---------- H007
+| /---------21
+| | \---------- H011
+| /--------22
+| | \--------------------- H012
++----------------------------------------23
+| \------------------------------- H006
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_24 --> node_20 9 1 1.000 1 ==> 2
+ node_20 --> node_19 10 1 1.000 1 ==> 2
+ node_19 --> node_18 8 1 1.000 1 ==> 2
+ node_18 --> node_17 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_17 --> node_16 6 1 0.500 1 --> 2
+ 7 1 0.500 1 --> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_16 --> H000 13 1 0.333 1 --> 0
+ node_18 --> H001 6 1 0.500 1 --> 2
+ 7 1 0.500 1 --> 2
+ node_20 --> H008 11 1 0.333 2 ==> 1
+ node_23 --> node_22 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_21 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_22 --> H012 11 1 0.333 2 --> 1
+ 13 1 0.333 1 --> 0
+ node_23 --> H006 11 1 0.333 2 --> 1
+ node_24 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 58 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #58 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 21 0 0 0
+ 18 21 2 2 3
+ 17 18 3 3 4
+ 16 17 2 2 3
+H010 (2) 16 1 1 1
+H013 (6) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 1
+H001 (7) 17 0 0 0
+H014 (5) 18 0 0 0
+ 19 21 2 2 3
+H007 (3) 19 1 1 2
+H012 (10) 19 1 1 2
+H011 (13) 19 1 0 1
+ 20 21 2 1 2
+H008 (4) 20 1 1 1
+H006 (12) 20 0 0 0
+H009 (11) 21 2 1 2
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+/------------------------------------------------------------------------- H002
+|
+| /----------------------------- H010
+| |
+| +----------------------------- H013
+| |
+| /-------------16 /--------------- H003
+| | +------------15
+| | | \--------------- H005
+| /------------17 |
+| | | \----------------------------- H000
+| | |
++-------------18 \-------------------------------------------- H001
+21 |
+| \---------------------------------------------------------- H014
+|
+| /--------------- H007
+| |
++--------------------------------------------------------19--------------- H012
+| |
+| \--------------- H011
+|
+| /--------------- H008
++--------------------------------------------------------20
+| \--------------- H006
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_18 9 1 0.500 1 ==> 2
+ 10 1 1.000 1 ==> 2
+ node_18 --> node_17 6 1 0.500 1 ==> 2
+ 7 1 0.500 1 ==> 2
+ 8 1 1.000 1 ==> 2
+ node_17 --> node_16 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_21 --> node_19 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_19 --> H007 12 1 0.333 2 ==> 1
+ node_19 --> H012 11 1 0.500 2 ==> 1
+ node_19 --> H011 13 1 0.333 0 --> 1
+ node_21 --> node_20 11 1 0.500 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_20 --> H008 9 1 0.500 1 ==> 2
+ node_21 --> H009 12 1 0.333 2 ==> 1
+ 13 1 0.333 0 --> 1
+
+Tree number 59 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #59 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 23 0 0 0
+ 19 23 1 1 1
+ 18 19 1 1 2
+ 17 18 3 3 4
+ 16 17 2 2 3
+H010 (2) 16 1 1 1
+H013 (6) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 1 0 1
+H001 (7) 17 0 0 0
+H014 (5) 18 0 0 0
+H008 (4) 19 1 1 1
+ 22 23 0 0 1
+ 21 22 2 2 3
+H007 (3) 21 2 0 2
+ 20 21 0 0 1
+H012 (10) 20 2 1 2
+H011 (13) 20 0 0 1
+H009 (11) 22 1 0 1
+H006 (12) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------------ H010
+| |
+| +------------------------ H013
+| |
+| /----------16 /------------ H003
+| | +----------15
+| | | \------------ H005
+| /-----------17 |
+| | | \------------------------ H000
+| | |
+| /----------18 \------------------------------------ H001
+23 | |
++----------19 \------------------------------------------------- H014
+| |
+| \------------------------------------------------------------- H008
+|
+| /------------------------ H007
+| |
+| /----------21 /------------ H012
+| | \----------20
++-----------------------------------22 \------------ H011
+| |
+| \------------------------------------ H009
+|
+\------------------------------------------------------------------------- H006
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_19 9 1 1.000 1 ==> 2
+ node_19 --> node_18 10 1 1.000 1 ==> 2
+ node_18 --> node_17 6 1 0.500 1 ==> 2
+ 7 1 0.500 1 ==> 2
+ 8 1 1.000 1 ==> 2
+ node_17 --> node_16 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_16 --> H000 13 1 0.333 1 --> 0
+ node_19 --> H008 11 1 0.333 2 ==> 1
+ node_22 --> node_21 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_21 --> H007 12 1 0.333 2 --> 1
+ 13 1 0.333 1 --> 0
+ node_20 --> H012 11 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_22 --> H009 12 1 0.333 2 --> 1
+ node_23 --> H006 11 1 0.333 2 ==> 1
+
+Tree number 60 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #60 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 23 0 0 0
+ 19 23 1 1 1
+ 18 19 1 1 2
+ 17 18 3 3 4
+ 16 17 2 2 3
+H010 (2) 16 1 1 1
+H013 (6) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 1 0 1
+H001 (7) 17 0 0 0
+H014 (5) 18 0 0 0
+H008 (4) 19 1 1 1
+ 22 23 0 0 1
+ 21 22 2 2 3
+ 20 21 0 0 1
+H007 (3) 20 2 1 2
+H011 (13) 20 0 0 1
+H012 (10) 21 2 0 2
+H006 (12) 22 1 0 1
+H009 (11) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------------ H010
+| |
+| +------------------------ H013
+| |
+| /----------16 /------------ H003
+| | +----------15
+| | | \------------ H005
+| /-----------17 |
+| | | \------------------------ H000
+| | |
+| /----------18 \------------------------------------ H001
+23 | |
++----------19 \------------------------------------------------- H014
+| |
+| \------------------------------------------------------------- H008
+|
+| /------------ H007
+| /----------20
+| | \------------ H011
+| /----------21
+| | \------------------------ H012
++-----------------------------------22
+| \------------------------------------ H006
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_19 9 1 1.000 1 ==> 2
+ node_19 --> node_18 10 1 1.000 1 ==> 2
+ node_18 --> node_17 6 1 0.500 1 ==> 2
+ 7 1 0.500 1 ==> 2
+ 8 1 1.000 1 ==> 2
+ node_17 --> node_16 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_16 --> H000 13 1 0.333 1 --> 0
+ node_19 --> H008 11 1 0.333 2 ==> 1
+ node_22 --> node_21 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_20 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_21 --> H012 11 1 0.333 2 --> 1
+ 13 1 0.333 1 --> 0
+ node_22 --> H006 11 1 0.333 2 --> 1
+ node_23 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 61 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #61 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 21 0 0 0
+ 18 21 2 2 3
+ 17 18 3 3 4
+ 16 17 2 2 3
+H010 (2) 16 1 1 1
+H001 (7) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 1
+H013 (6) 17 0 0 0
+H014 (5) 18 0 0 0
+ 19 21 2 2 3
+H007 (3) 19 1 1 2
+H012 (10) 19 1 1 2
+H011 (13) 19 1 0 1
+ 20 21 2 1 2
+H008 (4) 20 1 1 1
+H006 (12) 20 0 0 0
+H009 (11) 21 2 1 2
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+/------------------------------------------------------------------------- H002
+|
+| /----------------------------- H010
+| |
+| +----------------------------- H001
+| |
+| /-------------16 /--------------- H003
+| | +------------15
+| | | \--------------- H005
+| /------------17 |
+| | | \----------------------------- H000
+| | |
++-------------18 \-------------------------------------------- H013
+21 |
+| \---------------------------------------------------------- H014
+|
+| /--------------- H007
+| |
++--------------------------------------------------------19--------------- H012
+| |
+| \--------------- H011
+|
+| /--------------- H008
++--------------------------------------------------------20
+| \--------------- H006
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_18 9 1 0.500 1 ==> 2
+ 10 1 1.000 1 ==> 2
+ node_18 --> node_17 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ 8 1 1.000 1 ==> 2
+ node_17 --> node_16 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_21 --> node_19 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_19 --> H007 12 1 0.333 2 ==> 1
+ node_19 --> H012 11 1 0.500 2 ==> 1
+ node_19 --> H011 13 1 0.333 0 --> 1
+ node_21 --> node_20 11 1 0.500 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_20 --> H008 9 1 0.500 1 ==> 2
+ node_21 --> H009 12 1 0.333 2 ==> 1
+ 13 1 0.333 0 --> 1
+
+Tree number 62 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #62 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 23 0 0 0
+ 19 23 1 1 1
+ 18 19 1 1 2
+ 17 18 3 3 4
+ 16 17 2 2 3
+H010 (2) 16 1 1 1
+H001 (7) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 1 0 1
+H013 (6) 17 0 0 0
+H014 (5) 18 0 0 0
+H008 (4) 19 1 1 1
+ 22 23 0 0 1
+ 21 22 2 2 3
+H007 (3) 21 2 0 2
+ 20 21 0 0 1
+H012 (10) 20 2 1 2
+H011 (13) 20 0 0 1
+H009 (11) 22 1 0 1
+H006 (12) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------------ H010
+| |
+| +------------------------ H001
+| |
+| /----------16 /------------ H003
+| | +----------15
+| | | \------------ H005
+| /-----------17 |
+| | | \------------------------ H000
+| | |
+| /----------18 \------------------------------------ H013
+23 | |
++----------19 \------------------------------------------------- H014
+| |
+| \------------------------------------------------------------- H008
+|
+| /------------------------ H007
+| |
+| /----------21 /------------ H012
+| | \----------20
++-----------------------------------22 \------------ H011
+| |
+| \------------------------------------ H009
+|
+\------------------------------------------------------------------------- H006
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_19 9 1 1.000 1 ==> 2
+ node_19 --> node_18 10 1 1.000 1 ==> 2
+ node_18 --> node_17 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ 8 1 1.000 1 ==> 2
+ node_17 --> node_16 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_16 --> H000 13 1 0.333 1 --> 0
+ node_19 --> H008 11 1 0.333 2 ==> 1
+ node_22 --> node_21 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_21 --> H007 12 1 0.333 2 --> 1
+ 13 1 0.333 1 --> 0
+ node_20 --> H012 11 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_22 --> H009 12 1 0.333 2 --> 1
+ node_23 --> H006 11 1 0.333 2 ==> 1
+
+Tree number 63 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #63 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 23 0 0 0
+ 19 23 1 1 1
+ 18 19 1 1 2
+ 17 18 3 3 4
+ 16 17 2 2 3
+H010 (2) 16 1 1 1
+H001 (7) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 1 0 1
+H013 (6) 17 0 0 0
+H014 (5) 18 0 0 0
+H008 (4) 19 1 1 1
+ 22 23 0 0 1
+ 21 22 2 2 3
+ 20 21 0 0 1
+H007 (3) 20 2 1 2
+H011 (13) 20 0 0 1
+H012 (10) 21 2 0 2
+H006 (12) 22 1 0 1
+H009 (11) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------------ H010
+| |
+| +------------------------ H001
+| |
+| /----------16 /------------ H003
+| | +----------15
+| | | \------------ H005
+| /-----------17 |
+| | | \------------------------ H000
+| | |
+| /----------18 \------------------------------------ H013
+23 | |
++----------19 \------------------------------------------------- H014
+| |
+| \------------------------------------------------------------- H008
+|
+| /------------ H007
+| /----------20
+| | \------------ H011
+| /----------21
+| | \------------------------ H012
++-----------------------------------22
+| \------------------------------------ H006
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_19 9 1 1.000 1 ==> 2
+ node_19 --> node_18 10 1 1.000 1 ==> 2
+ node_18 --> node_17 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ 8 1 1.000 1 ==> 2
+ node_17 --> node_16 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_16 --> H000 13 1 0.333 1 --> 0
+ node_19 --> H008 11 1 0.333 2 ==> 1
+ node_22 --> node_21 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_20 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_21 --> H012 11 1 0.333 2 --> 1
+ 13 1 0.333 1 --> 0
+ node_22 --> H006 11 1 0.333 2 --> 1
+ node_23 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 64 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #64 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 25 0 0 0
+ 21 25 0 0 1
+ 19 21 2 1 3
+ 18 19 1 1 4
+ 17 18 2 2 3
+ 16 17 2 0 3
+H010 (2) 16 1 1 1
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 1
+H001 (7) 17 0 0 2
+H013 (6) 18 2 0 2
+H014 (5) 19 0 0 0
+ 20 21 2 1 2
+H008 (4) 20 1 0 1
+H006 (12) 20 0 0 1
+ 24 25 0 0 1
+ 23 24 2 2 3
+H007 (3) 23 1 0 2
+ 22 23 0 0 1
+H012 (10) 22 1 1 2
+H011 (13) 22 1 0 1
+H009 (11) 24 2 0 2
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+/------------------------------------------------------------------------- H002
+|
+| /--------------------- H010
+| |
+| | /---------- H003
+| /--------16---------15
+| | | \---------- H005
+| | |
+| /---------17 \--------------------- H000
+| | |
+| /--------18 \------------------------------- H001
+| | |
+25 /---------19 \------------------------------------------ H013
+| | |
+| | \---------------------------------------------------- H014
++--------21
+| | /---------- H008
+| \---------------------------------------------------20
+| \---------- H006
+|
+| /--------------------- H007
+| |
+| /--------23 /---------- H012
+| | \---------22
+\----------------------------------------24 \---------- H011
+ |
+ \------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_19 9 1 0.500 1 --> 2
+ 10 1 1.000 1 ==> 2
+ node_19 --> node_18 8 1 1.000 1 ==> 2
+ node_18 --> node_17 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_17 --> node_16 1 1 0.333 1 --> 2
+ 2 1 0.333 1 --> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_18 --> H013 1 1 0.333 1 --> 2
+ 2 1 0.333 1 --> 2
+ node_21 --> node_20 11 1 0.500 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_20 --> H008 9 1 0.500 1 --> 2
+ node_24 --> node_23 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_23 --> H007 12 1 0.333 2 --> 1
+ node_22 --> H012 11 1 0.500 2 ==> 1
+ node_22 --> H011 13 1 0.333 0 --> 1
+ node_24 --> H009 12 1 0.333 2 --> 1
+ 13 1 0.333 0 --> 1
+
+Tree number 65 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #65 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 24 0 0 0
+ 19 24 2 2 3
+ 18 19 1 1 4
+ 17 18 2 2 3
+ 16 17 2 0 3
+H010 (2) 16 1 1 1
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 1
+H001 (7) 17 0 0 2
+H013 (6) 18 2 0 2
+H014 (5) 19 0 0 0
+ 22 24 0 0 1
+ 21 22 2 2 3
+H007 (3) 21 1 0 2
+ 20 21 0 0 1
+H012 (10) 20 1 1 2
+H011 (13) 20 1 0 1
+H009 (11) 22 2 0 2
+ 23 24 2 1 2
+H008 (4) 23 1 1 1
+H006 (12) 23 0 0 0
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------------ H010
+| |
+| | /------------ H003
+| /----------16----------15
+| | | \------------ H005
+| | |
+| /-----------17 \------------------------ H000
+| | |
+| /----------18 \------------------------------------ H001
+| | |
++----------19 \------------------------------------------------- H013
+24 |
+| \------------------------------------------------------------- H014
+|
+| /------------------------ H007
+| |
+| /----------21 /------------ H012
+| | \----------20
++-----------------------------------22 \------------ H011
+| |
+| \------------------------------------ H009
+|
+| /------------ H008
+\-----------------------------------------------------------23
+ \------------ H006
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_24 --> node_19 9 1 0.500 1 ==> 2
+ 10 1 1.000 1 ==> 2
+ node_19 --> node_18 8 1 1.000 1 ==> 2
+ node_18 --> node_17 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_17 --> node_16 1 1 0.333 1 --> 2
+ 2 1 0.333 1 --> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_18 --> H013 1 1 0.333 1 --> 2
+ 2 1 0.333 1 --> 2
+ node_22 --> node_21 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_21 --> H007 12 1 0.333 2 --> 1
+ node_20 --> H012 11 1 0.500 2 ==> 1
+ node_20 --> H011 13 1 0.333 0 --> 1
+ node_22 --> H009 12 1 0.333 2 --> 1
+ 13 1 0.333 0 --> 1
+ node_24 --> node_23 11 1 0.500 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_23 --> H008 9 1 0.500 1 ==> 2
+
+Tree number 66 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #66 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 23 0 0 0
+ 19 23 2 2 3
+ 18 19 1 1 4
+ 17 18 2 2 3
+ 16 17 2 0 3
+H010 (2) 16 1 1 1
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 1 0 1
+H001 (7) 17 0 0 2
+H013 (6) 18 2 0 2
+H014 (5) 19 0 0 0
+ 22 23 1 1 1
+ 21 22 2 2 3
+ 20 21 1 1 1
+H007 (3) 20 2 1 2
+H011 (13) 20 0 0 1
+H012 (10) 21 1 0 1
+H008 (4) 22 1 1 1
+H006 (12) 22 0 0 0
+H009 (11) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------------ H010
+| |
+| | /------------ H003
+| /----------16----------15
+| | | \------------ H005
+| | |
+| /-----------17 \------------------------ H000
+| | |
+| /----------18 \------------------------------------ H001
+| | |
++----------19 \------------------------------------------------- H013
+23 |
+| \------------------------------------------------------------- H014
+|
+| /------------ H007
+| /----------20
+| | \------------ H011
+| /----------21
+| | \------------------------ H012
+| |
++-----------------------------------22------------------------------------ H008
+| |
+| \------------------------------------ H006
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_19 9 1 0.500 1 ==> 2
+ 10 1 1.000 1 ==> 2
+ node_19 --> node_18 8 1 1.000 1 ==> 2
+ node_18 --> node_17 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_17 --> node_16 1 1 0.333 1 --> 2
+ 2 1 0.333 1 --> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_16 --> H000 13 1 0.333 1 --> 0
+ node_18 --> H013 1 1 0.333 1 --> 2
+ 2 1 0.333 1 --> 2
+ node_23 --> node_22 11 1 0.500 2 ==> 1
+ node_22 --> node_21 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_21 --> node_20 11 1 0.500 1 ==> 2
+ node_20 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_21 --> H012 13 1 0.333 1 --> 0
+ node_22 --> H008 9 1 0.500 1 ==> 2
+ node_23 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 67 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #67 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 24 0 0 0
+ 19 24 2 2 3
+ 18 19 1 1 4
+ 17 18 2 2 3
+ 16 17 2 0 3
+H010 (2) 16 1 1 1
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 1
+H001 (7) 17 0 0 2
+H013 (6) 18 2 0 2
+H014 (5) 19 0 0 0
+ 23 24 0 0 1
+ 21 23 2 2 3
+ 20 21 0 0 1
+H007 (3) 20 1 1 2
+H011 (13) 20 1 0 1
+H012 (10) 21 1 0 2
+ 22 23 2 0 2
+H008 (4) 22 1 1 1
+H006 (12) 22 0 0 0
+H009 (11) 24 2 1 2
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------------ H010
+| |
+| | /------------ H003
+| /----------16----------15
+| | | \------------ H005
+| | |
+| /-----------17 \------------------------ H000
+| | |
+| /----------18 \------------------------------------ H001
+| | |
++----------19 \------------------------------------------------- H013
+24 |
+| \------------------------------------------------------------- H014
+|
+| /------------ H007
+| /----------20
+| | \------------ H011
+| /----------21
+| | \------------------------ H012
++-----------------------------------23
+| | /------------ H008
+| \----------------------22
+| \------------ H006
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_24 --> node_19 9 1 0.500 1 ==> 2
+ 10 1 1.000 1 ==> 2
+ node_19 --> node_18 8 1 1.000 1 ==> 2
+ node_18 --> node_17 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_17 --> node_16 1 1 0.333 1 --> 2
+ 2 1 0.333 1 --> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_18 --> H013 1 1 0.333 1 --> 2
+ 2 1 0.333 1 --> 2
+ node_23 --> node_21 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_20 --> H007 12 1 0.333 2 ==> 1
+ node_20 --> H011 13 1 0.333 0 --> 1
+ node_21 --> H012 11 1 0.500 2 --> 1
+ node_23 --> node_22 11 1 0.500 2 --> 1
+ 13 1 0.333 0 --> 1
+ node_22 --> H008 9 1 0.500 1 ==> 2
+ node_24 --> H009 12 1 0.333 2 ==> 1
+ 13 1 0.333 0 --> 1
+
+Tree number 68 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #68 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 25 0 0 0
+ 24 25 0 0 1
+ 20 24 1 1 1
+ 19 20 1 1 3
+ 18 19 1 1 4
+ 17 18 2 2 3
+ 16 17 2 0 3
+H010 (2) 16 1 1 1
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 1 0 1
+H001 (7) 17 0 0 2
+H013 (6) 18 2 0 2
+H014 (5) 19 0 0 0
+H008 (4) 20 1 0 1
+ 23 24 0 0 1
+ 22 23 2 2 3
+ 21 22 0 0 1
+H007 (3) 21 2 1 2
+H011 (13) 21 0 0 1
+H012 (10) 22 2 0 2
+H006 (12) 23 1 0 1
+H009 (11) 25 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------ H010
+| |
+| | /--------- H003
+| /-------16-------15
+| | | \--------- H005
+| | |
+| /--------17 \------------------ H000
+| | |
+| /-------18 \--------------------------- H001
+| | |
+| /-------19 \------------------------------------- H013
+25 | |
+| /-------20 \---------------------------------------------- H014
+| | |
+| | \------------------------------------------------------- H008
+| |
+| | /--------- H007
++-------24 /-------21
+| | | \--------- H011
+| | /-------22
+| | | \------------------ H012
+| \-----------------------------------23
+| \--------------------------- H006
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_24 --> node_20 9 1 1.000 1 ==> 2
+ node_20 --> node_19 10 1 1.000 1 ==> 2
+ node_19 --> node_18 8 1 1.000 1 ==> 2
+ node_18 --> node_17 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_17 --> node_16 1 1 0.333 1 --> 2
+ 2 1 0.333 1 --> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_16 --> H000 13 1 0.333 1 --> 0
+ node_18 --> H013 1 1 0.333 1 --> 2
+ 2 1 0.333 1 --> 2
+ node_20 --> H008 11 1 0.333 2 --> 1
+ node_23 --> node_22 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_21 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_22 --> H012 11 1 0.333 2 --> 1
+ 13 1 0.333 1 --> 0
+ node_23 --> H006 11 1 0.333 2 --> 1
+ node_25 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 69 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #69 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 25 0 0 0
+ 21 25 0 0 1
+ 20 21 1 1 1
+ 19 20 1 1 3
+ 18 19 1 1 4
+ 17 18 2 2 3
+ 16 17 2 0 3
+H010 (2) 16 1 1 1
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 1 0 1
+H001 (7) 17 0 0 2
+H013 (6) 18 2 0 2
+H014 (5) 19 0 0 0
+H008 (4) 20 1 0 1
+H006 (12) 21 1 0 1
+ 24 25 0 0 1
+ 23 24 2 2 3
+H007 (3) 23 2 0 2
+ 22 23 0 0 1
+H012 (10) 22 2 1 2
+H011 (13) 22 0 0 1
+H009 (11) 24 1 0 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------ H010
+| |
+| | /--------- H003
+| /-------16-------15
+| | | \--------- H005
+| | |
+| /--------17 \------------------ H000
+| | |
+| /-------18 \--------------------------- H001
+| | |
+25 /-------19 \------------------------------------- H013
+| | |
+| /-------20 \---------------------------------------------- H014
+| | |
++-------21 \------------------------------------------------------- H008
+| |
+| \---------------------------------------------------------------- H006
+|
+| /------------------ H007
+| |
+| /-------23 /--------- H012
+| | \-------22
+\--------------------------------------------24 \--------- H011
+ |
+ \--------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_20 9 1 1.000 1 ==> 2
+ node_20 --> node_19 10 1 1.000 1 ==> 2
+ node_19 --> node_18 8 1 1.000 1 ==> 2
+ node_18 --> node_17 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_17 --> node_16 1 1 0.333 1 --> 2
+ 2 1 0.333 1 --> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_16 --> H000 13 1 0.333 1 --> 0
+ node_18 --> H013 1 1 0.333 1 --> 2
+ 2 1 0.333 1 --> 2
+ node_20 --> H008 11 1 0.333 2 --> 1
+ node_21 --> H006 11 1 0.333 2 --> 1
+ node_24 --> node_23 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_23 --> H007 12 1 0.333 2 --> 1
+ 13 1 0.333 1 --> 0
+ node_22 --> H012 11 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_24 --> H009 12 1 0.333 2 --> 1
+
+Tree number 70 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #70 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 25 0 0 0
+ 24 25 0 0 1
+ 19 24 2 1 3
+ 18 19 1 1 4
+ 17 18 2 2 3
+ 16 17 2 0 3
+H010 (2) 16 1 1 1
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 1 0 1
+H001 (7) 17 0 0 2
+H013 (6) 18 2 0 2
+H014 (5) 19 0 0 0
+ 23 24 1 1 1
+ 22 23 0 0 1
+ 21 22 2 2 3
+ 20 21 1 1 1
+H007 (3) 20 2 1 2
+H011 (13) 20 0 0 1
+H012 (10) 21 1 0 1
+H006 (12) 22 0 0 0
+H008 (4) 23 1 0 1
+H009 (11) 25 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+/------------------------------------------------------------------------- H002
+|
+| /--------------------- H010
+| |
+| | /---------- H003
+| /--------16---------15
+| | | \---------- H005
+| | |
+| /---------17 \--------------------- H000
+| | |
+| /--------18 \------------------------------- H001
+| | |
+| /---------19 \------------------------------------------ H013
+25 | |
+| | \---------------------------------------------------- H014
+| |
+| | /---------- H007
+| | /---------20
++--------24 | \---------- H011
+| | /--------21
+| | | \--------------------- H012
+| | /---------22
+| | | \------------------------------- H006
+| \-------------------23
+| \------------------------------------------ H008
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_24 --> node_19 9 1 0.500 1 --> 2
+ 10 1 1.000 1 ==> 2
+ node_19 --> node_18 8 1 1.000 1 ==> 2
+ node_18 --> node_17 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_17 --> node_16 1 1 0.333 1 --> 2
+ 2 1 0.333 1 --> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_16 --> H000 13 1 0.333 1 --> 0
+ node_18 --> H013 1 1 0.333 1 --> 2
+ 2 1 0.333 1 --> 2
+ node_24 --> node_23 11 1 0.500 2 ==> 1
+ node_22 --> node_21 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_21 --> node_20 11 1 0.500 1 ==> 2
+ node_20 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_21 --> H012 13 1 0.333 1 --> 0
+ node_23 --> H008 9 1 0.500 1 --> 2
+ node_25 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 71 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #71 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 25 0 0 0
+ 24 25 0 0 1
+ 20 24 1 1 1
+ 19 20 1 1 3
+ 18 19 1 1 4
+ 17 18 2 2 3
+ 16 17 2 0 3
+H010 (2) 16 1 1 1
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 1 0 1
+H013 (6) 17 0 0 2
+H001 (7) 18 2 0 2
+H014 (5) 19 0 0 0
+H008 (4) 20 1 0 1
+ 23 24 0 0 1
+ 22 23 2 2 3
+ 21 22 0 0 1
+H007 (3) 21 2 1 2
+H011 (13) 21 0 0 1
+H012 (10) 22 2 0 2
+H006 (12) 23 1 0 1
+H009 (11) 25 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------ H010
+| |
+| | /--------- H003
+| /-------16-------15
+| | | \--------- H005
+| | |
+| /--------17 \------------------ H000
+| | |
+| /-------18 \--------------------------- H013
+| | |
+| /-------19 \------------------------------------- H001
+25 | |
+| /-------20 \---------------------------------------------- H014
+| | |
+| | \------------------------------------------------------- H008
+| |
+| | /--------- H007
++-------24 /-------21
+| | | \--------- H011
+| | /-------22
+| | | \------------------ H012
+| \-----------------------------------23
+| \--------------------------- H006
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_24 --> node_20 9 1 1.000 1 ==> 2
+ node_20 --> node_19 10 1 1.000 1 ==> 2
+ node_19 --> node_18 8 1 1.000 1 ==> 2
+ node_18 --> node_17 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_17 --> node_16 6 1 0.500 1 --> 2
+ 7 1 0.500 1 --> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_16 --> H000 13 1 0.333 1 --> 0
+ node_18 --> H001 6 1 0.500 1 --> 2
+ 7 1 0.500 1 --> 2
+ node_20 --> H008 11 1 0.333 2 --> 1
+ node_23 --> node_22 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_21 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_22 --> H012 11 1 0.333 2 --> 1
+ 13 1 0.333 1 --> 0
+ node_23 --> H006 11 1 0.333 2 --> 1
+ node_25 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 72 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #72 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 25 0 0 0
+ 24 25 0 0 1
+ 21 24 0 0 1
+ 20 21 1 1 1
+ 19 20 1 1 3
+ 18 19 1 1 4
+ 17 18 2 2 3
+ 16 17 2 0 3
+H010 (2) 16 1 1 1
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 1 0 1
+H013 (6) 17 0 0 2
+H001 (7) 18 2 0 2
+H014 (5) 19 0 0 0
+H008 (4) 20 1 0 1
+H006 (12) 21 1 0 1
+ 23 24 2 2 3
+ 22 23 0 0 1
+H007 (3) 22 2 1 2
+H011 (13) 22 0 0 1
+H012 (10) 23 2 0 2
+H009 (11) 25 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+/------------------------------------------------------------------------- H002
+|
+| /---------------- H010
+| |
+| | /-------- H003
+| /------16------15
+| | | \-------- H005
+| | |
+| /------17 \---------------- H000
+| | |
+| /-------18 \------------------------ H013
+| | |
+| /------19 \-------------------------------- H001
+25 | |
+| /------20 \----------------------------------------- H014
+| | |
+| /------21 \------------------------------------------------- H008
+| | |
+| | \--------------------------------------------------------- H006
+| |
++------24 /-------- H007
+| | /------22
+| | | \-------- H011
+| \-----------------------------------------------23
+| \---------------- H012
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_20 9 1 1.000 1 ==> 2
+ node_20 --> node_19 10 1 1.000 1 ==> 2
+ node_19 --> node_18 8 1 1.000 1 ==> 2
+ node_18 --> node_17 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_17 --> node_16 6 1 0.500 1 --> 2
+ 7 1 0.500 1 --> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_16 --> H000 13 1 0.333 1 --> 0
+ node_18 --> H001 6 1 0.500 1 --> 2
+ 7 1 0.500 1 --> 2
+ node_20 --> H008 11 1 0.333 2 --> 1
+ node_21 --> H006 11 1 0.333 2 --> 1
+ node_24 --> node_23 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_22 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_23 --> H012 11 1 0.333 2 --> 1
+ 13 1 0.333 1 --> 0
+ node_25 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 73 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #73 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 23 0 0 0
+ 18 23 2 2 3
+ 17 18 3 3 4
+ 16 17 2 2 3
+H010 (2) 16 1 1 1
+H001 (7) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 1
+H013 (6) 17 0 0 0
+H014 (5) 18 0 0 0
+ 21 23 0 0 1
+ 20 21 2 2 3
+H007 (3) 20 1 0 2
+ 19 20 0 0 1
+H012 (10) 19 1 1 2
+H011 (13) 19 1 0 1
+H009 (11) 21 2 0 2
+ 22 23 2 1 2
+H008 (4) 22 1 1 1
+H006 (12) 22 0 0 0
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+/------------------------------------------------------------------------- H002
+|
+| /----------------------------- H010
+| |
+| +----------------------------- H001
+| |
+| /-------------16 /--------------- H003
+| | +------------15
+| | | \--------------- H005
+| /------------17 |
+| | | \----------------------------- H000
+| | |
++-------------18 \-------------------------------------------- H013
+23 |
+| \---------------------------------------------------------- H014
+|
+| /----------------------------- H007
+| |
+| /-------------20 /--------------- H012
+| | \------------19
++---------------------------21 \--------------- H011
+| |
+| \-------------------------------------------- H009
+|
+| /--------------- H008
+\--------------------------------------------------------22
+ \--------------- H006
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_18 9 1 0.500 1 ==> 2
+ 10 1 1.000 1 ==> 2
+ node_18 --> node_17 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ 8 1 1.000 1 ==> 2
+ node_17 --> node_16 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_21 --> node_20 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_20 --> H007 12 1 0.333 2 --> 1
+ node_19 --> H012 11 1 0.500 2 ==> 1
+ node_19 --> H011 13 1 0.333 0 --> 1
+ node_21 --> H009 12 1 0.333 2 --> 1
+ 13 1 0.333 0 --> 1
+ node_23 --> node_22 11 1 0.500 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_22 --> H008 9 1 0.500 1 ==> 2
+
+Tree number 74 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #74 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 23 0 0 0
+ 18 23 2 2 3
+ 17 18 3 3 4
+ 16 17 2 2 3
+H010 (2) 16 1 1 1
+H001 (7) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 1
+H013 (6) 17 0 0 0
+H014 (5) 18 0 0 0
+ 22 23 0 0 1
+ 20 22 2 2 3
+ 19 20 0 0 1
+H007 (3) 19 1 1 2
+H011 (13) 19 1 0 1
+H012 (10) 20 1 0 2
+ 21 22 2 0 2
+H008 (4) 21 1 1 1
+H006 (12) 21 0 0 0
+H009 (11) 23 2 1 2
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+/------------------------------------------------------------------------- H002
+|
+| /----------------------------- H010
+| |
+| +----------------------------- H001
+| |
+| /-------------16 /--------------- H003
+| | +------------15
+| | | \--------------- H005
+| /------------17 |
+| | | \----------------------------- H000
+| | |
++-------------18 \-------------------------------------------- H013
+23 |
+| \---------------------------------------------------------- H014
+|
+| /--------------- H007
+| /------------19
+| | \--------------- H011
+| /-------------20
+| | \----------------------------- H012
++---------------------------22
+| | /--------------- H008
+| \---------------------------21
+| \--------------- H006
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_18 9 1 0.500 1 ==> 2
+ 10 1 1.000 1 ==> 2
+ node_18 --> node_17 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ 8 1 1.000 1 ==> 2
+ node_17 --> node_16 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_22 --> node_20 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_19 --> H007 12 1 0.333 2 ==> 1
+ node_19 --> H011 13 1 0.333 0 --> 1
+ node_20 --> H012 11 1 0.500 2 --> 1
+ node_22 --> node_21 11 1 0.500 2 --> 1
+ 13 1 0.333 0 --> 1
+ node_21 --> H008 9 1 0.500 1 ==> 2
+ node_23 --> H009 12 1 0.333 2 ==> 1
+ 13 1 0.333 0 --> 1
+
+Tree number 75 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #75 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 22 0 0 0
+ 18 22 2 2 3
+ 17 18 3 3 4
+ 16 17 2 2 3
+H010 (2) 16 1 1 1
+H001 (7) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 1 0 1
+H013 (6) 17 0 0 0
+H014 (5) 18 0 0 0
+ 21 22 1 1 1
+ 20 21 2 2 3
+ 19 20 1 1 1
+H007 (3) 19 2 1 2
+H011 (13) 19 0 0 1
+H012 (10) 20 1 0 1
+H008 (4) 21 1 1 1
+H006 (12) 21 0 0 0
+H009 (11) 22 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+/------------------------------------------------------------------------- H002
+|
+| /----------------------------- H010
+| |
+| +----------------------------- H001
+| |
+| /-------------16 /--------------- H003
+| | +------------15
+| | | \--------------- H005
+| /------------17 |
+| | | \----------------------------- H000
+| | |
++-------------18 \-------------------------------------------- H013
+22 |
+| \---------------------------------------------------------- H014
+|
+| /--------------- H007
+| /------------19
+| | \--------------- H011
+| /-------------20
+| | \----------------------------- H012
+| |
++---------------------------21-------------------------------------------- H008
+| |
+| \-------------------------------------------- H006
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_18 9 1 0.500 1 ==> 2
+ 10 1 1.000 1 ==> 2
+ node_18 --> node_17 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ 8 1 1.000 1 ==> 2
+ node_17 --> node_16 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_16 --> H000 13 1 0.333 1 --> 0
+ node_22 --> node_21 11 1 0.500 2 ==> 1
+ node_21 --> node_20 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_20 --> node_19 11 1 0.500 1 ==> 2
+ node_19 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_20 --> H012 13 1 0.333 1 --> 0
+ node_21 --> H008 9 1 0.500 1 ==> 2
+ node_22 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 76 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #76 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 24 0 0 0
+ 23 24 0 0 1
+ 18 23 2 1 3
+ 17 18 3 3 4
+ 16 17 2 2 3
+H010 (2) 16 1 1 1
+H001 (7) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 1 0 1
+H013 (6) 17 0 0 0
+H014 (5) 18 0 0 0
+ 22 23 1 1 1
+ 21 22 0 0 1
+ 20 21 2 2 3
+ 19 20 1 1 1
+H007 (3) 19 2 1 2
+H011 (13) 19 0 0 1
+H012 (10) 20 1 0 1
+H006 (12) 21 0 0 0
+H008 (4) 22 1 0 1
+H009 (11) 24 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------------ H010
+| |
+| +------------------------ H001
+| |
+| /----------16 /------------ H003
+| | +----------15
+| | | \------------ H005
+| /-----------17 |
+| | | \------------------------ H000
+| | |
+| /----------18 \------------------------------------ H013
+24 | |
+| | \------------------------------------------------- H014
+| |
+| | /------------ H007
+| | /----------19
++----------23 | \------------ H011
+| | /----------20
+| | | \------------------------ H012
+| | /-----------21
+| | | \------------------------------------ H006
+| \----------22
+| \------------------------------------------------- H008
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_18 9 1 0.500 1 --> 2
+ 10 1 1.000 1 ==> 2
+ node_18 --> node_17 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ 8 1 1.000 1 ==> 2
+ node_17 --> node_16 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_16 --> H000 13 1 0.333 1 --> 0
+ node_23 --> node_22 11 1 0.500 2 ==> 1
+ node_21 --> node_20 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_20 --> node_19 11 1 0.500 1 ==> 2
+ node_19 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_20 --> H012 13 1 0.333 1 --> 0
+ node_22 --> H008 9 1 0.500 1 --> 2
+ node_24 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 77 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #77 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 24 0 0 0
+ 20 24 0 0 1
+ 18 20 2 1 3
+ 17 18 3 3 4
+ 16 17 2 2 3
+H010 (2) 16 1 1 1
+H001 (7) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 1
+H013 (6) 17 0 0 0
+H014 (5) 18 0 0 0
+ 19 20 2 1 2
+H008 (4) 19 1 0 1
+H006 (12) 19 0 0 1
+ 23 24 0 0 1
+ 22 23 2 2 3
+H007 (3) 22 1 0 2
+ 21 22 0 0 1
+H012 (10) 21 1 1 2
+H011 (13) 21 1 0 1
+H009 (11) 23 2 0 2
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------------ H010
+| |
+| +------------------------ H001
+| |
+| /----------16 /------------ H003
+| | +----------15
+| | | \------------ H005
+| /-----------17 |
+| | | \------------------------ H000
+| | |
+24 /----------18 \------------------------------------ H013
+| | |
+| | \------------------------------------------------- H014
++----------20
+| | /------------ H008
+| \-----------------------------------------------19
+| \------------ H006
+|
+| /------------------------ H007
+| |
+| /----------22 /------------ H012
+| | \----------21
+\-----------------------------------23 \------------ H011
+ |
+ \------------------------------------ H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_20 --> node_18 9 1 0.500 1 --> 2
+ 10 1 1.000 1 ==> 2
+ node_18 --> node_17 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ 8 1 1.000 1 ==> 2
+ node_17 --> node_16 6 1 1.000 1 ==> 2
+ 7 1 1.000 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H001 1 1 0.333 2 ==> 1
+ 2 1 0.333 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_20 --> node_19 11 1 0.500 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_19 --> H008 9 1 0.500 1 --> 2
+ node_23 --> node_22 1 1 0.333 1 ==> 2
+ 2 1 0.333 1 ==> 2
+ node_22 --> H007 12 1 0.333 2 --> 1
+ node_21 --> H012 11 1 0.500 2 ==> 1
+ node_21 --> H011 13 1 0.333 0 --> 1
+ node_23 --> H009 12 1 0.333 2 --> 1
+ 13 1 0.333 0 --> 1
+
+Tree number 78 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #78 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 24 0 0 0
+ 20 24 0 0 1
+ 18 20 2 1 3
+ 17 18 3 3 4
+ 16 17 2 2 3
+H010 (2) 16 1 1 1
+H013 (6) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 1
+H001 (7) 17 0 0 0
+H014 (5) 18 0 0 0
+ 19 20 2 1 2
+H008 (4) 19 1 0 1
+H006 (12) 19 0 0 1
+ 23 24 0 0 1
+ 22 23 2 2 3
+H007 (3) 22 1 0 2
+ 21 22 0 0 1
+H012 (10) 21 1 1 2
+H011 (13) 21 1 0 1
+H009 (11) 23 2 0 2
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------------ H010
+| |
+| +------------------------ H013
+| |
+| /----------16 /------------ H003
+| | +----------15
+| | | \------------ H005
+| /-----------17 |
+| | | \------------------------ H000
+| | |
+24 /----------18 \------------------------------------ H001
+| | |
+| | \------------------------------------------------- H014
++----------20
+| | /------------ H008
+| \-----------------------------------------------19
+| \------------ H006
+|
+| /------------------------ H007
+| |
+| /----------22 /------------ H012
+| | \----------21
+\-----------------------------------23 \------------ H011
+ |
+ \------------------------------------ H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_20 --> node_18 9 1 0.500 1 --> 2
+ 10 1 1.000 1 ==> 2
+ node_18 --> node_17 6 1 0.500 1 ==> 2
+ 7 1 0.500 1 ==> 2
+ 8 1 1.000 1 ==> 2
+ node_17 --> node_16 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_20 --> node_19 11 1 0.500 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_19 --> H008 9 1 0.500 1 --> 2
+ node_23 --> node_22 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_22 --> H007 12 1 0.333 2 --> 1
+ node_21 --> H012 11 1 0.500 2 ==> 1
+ node_21 --> H011 13 1 0.333 0 --> 1
+ node_23 --> H009 12 1 0.333 2 --> 1
+ 13 1 0.333 0 --> 1
+
+Tree number 79 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #79 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 23 0 0 0
+ 22 23 0 0 1
+ 19 22 1 1 1
+ 18 19 1 1 3
+ 17 18 3 3 4
+ 16 17 2 2 3
+H010 (2) 16 1 1 1
+H013 (6) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 1 0 1
+H001 (7) 17 0 0 0
+H014 (5) 18 0 0 0
+H008 (4) 19 1 0 1
+ 21 22 2 2 3
+ 20 21 0 0 1
+H007 (3) 20 2 1 2
+H011 (13) 20 0 0 1
+H012 (10) 21 2 0 2
+H006 (12) 22 1 0 1
+H009 (11) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+/------------------------------------------------------------------------- H002
+|
+| /--------------------- H010
+| |
+| +--------------------- H013
+| |
+| /--------16 /---------- H003
+| | +---------15
+| | | \---------- H005
+| /---------17 |
+| | | \--------------------- H000
+| | |
+| /--------18 \------------------------------- H001
+23 | |
+| /---------19 \------------------------------------------ H014
+| | |
+| | \---------------------------------------------------- H008
+| |
+| | /---------- H007
++--------22 /---------20
+| | | \---------- H011
+| +----------------------------------------21
+| | \--------------------- H012
+| |
+| \--------------------------------------------------------------- H006
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_19 9 1 1.000 1 ==> 2
+ node_19 --> node_18 10 1 1.000 1 ==> 2
+ node_18 --> node_17 6 1 0.500 1 ==> 2
+ 7 1 0.500 1 ==> 2
+ 8 1 1.000 1 ==> 2
+ node_17 --> node_16 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_16 --> H000 13 1 0.333 1 --> 0
+ node_19 --> H008 11 1 0.333 2 --> 1
+ node_22 --> node_21 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_20 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_21 --> H012 11 1 0.333 2 --> 1
+ 13 1 0.333 1 --> 0
+ node_22 --> H006 11 1 0.333 2 --> 1
+ node_23 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 80 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #80 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 24 0 0 0
+ 23 24 0 0 1
+ 18 23 2 1 3
+ 17 18 3 3 4
+ 16 17 2 2 3
+H010 (2) 16 1 1 1
+H013 (6) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 1 0 1
+H001 (7) 17 0 0 0
+H014 (5) 18 0 0 0
+ 22 23 1 1 1
+ 21 22 0 0 1
+ 20 21 2 2 3
+ 19 20 1 1 1
+H007 (3) 19 2 1 2
+H011 (13) 19 0 0 1
+H012 (10) 20 1 0 1
+H006 (12) 21 0 0 0
+H008 (4) 22 1 0 1
+H009 (11) 24 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------------ H010
+| |
+| +------------------------ H013
+| |
+| /----------16 /------------ H003
+| | +----------15
+| | | \------------ H005
+| /-----------17 |
+| | | \------------------------ H000
+| | |
+| /----------18 \------------------------------------ H001
+24 | |
+| | \------------------------------------------------- H014
+| |
+| | /------------ H007
+| | /----------19
++----------23 | \------------ H011
+| | /----------20
+| | | \------------------------ H012
+| | /-----------21
+| | | \------------------------------------ H006
+| \----------22
+| \------------------------------------------------- H008
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_18 9 1 0.500 1 --> 2
+ 10 1 1.000 1 ==> 2
+ node_18 --> node_17 6 1 0.500 1 ==> 2
+ 7 1 0.500 1 ==> 2
+ 8 1 1.000 1 ==> 2
+ node_17 --> node_16 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_16 --> H000 13 1 0.333 1 --> 0
+ node_23 --> node_22 11 1 0.500 2 ==> 1
+ node_21 --> node_20 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_20 --> node_19 11 1 0.500 1 ==> 2
+ node_19 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_20 --> H012 13 1 0.333 1 --> 0
+ node_22 --> H008 9 1 0.500 1 --> 2
+ node_24 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 81 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #81 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 23 0 0 0
+ 18 23 2 2 3
+ 17 18 3 3 4
+ 16 17 2 2 3
+H010 (2) 16 1 1 1
+H013 (6) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 1
+H001 (7) 17 0 0 0
+H014 (5) 18 0 0 0
+ 22 23 0 0 1
+ 20 22 2 2 3
+ 19 20 0 0 1
+H007 (3) 19 1 1 2
+H011 (13) 19 1 0 1
+H012 (10) 20 1 0 2
+ 21 22 2 0 2
+H008 (4) 21 1 1 1
+H006 (12) 21 0 0 0
+H009 (11) 23 2 1 2
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+/------------------------------------------------------------------------- H002
+|
+| /----------------------------- H010
+| |
+| +----------------------------- H013
+| |
+| /-------------16 /--------------- H003
+| | +------------15
+| | | \--------------- H005
+| /------------17 |
+| | | \----------------------------- H000
+| | |
++-------------18 \-------------------------------------------- H001
+23 |
+| \---------------------------------------------------------- H014
+|
+| /--------------- H007
+| /------------19
+| | \--------------- H011
+| /-------------20
+| | \----------------------------- H012
++---------------------------22
+| | /--------------- H008
+| \---------------------------21
+| \--------------- H006
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_18 9 1 0.500 1 ==> 2
+ 10 1 1.000 1 ==> 2
+ node_18 --> node_17 6 1 0.500 1 ==> 2
+ 7 1 0.500 1 ==> 2
+ 8 1 1.000 1 ==> 2
+ node_17 --> node_16 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_22 --> node_20 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_19 --> H007 12 1 0.333 2 ==> 1
+ node_19 --> H011 13 1 0.333 0 --> 1
+ node_20 --> H012 11 1 0.500 2 --> 1
+ node_22 --> node_21 11 1 0.500 2 --> 1
+ 13 1 0.333 0 --> 1
+ node_21 --> H008 9 1 0.500 1 ==> 2
+ node_23 --> H009 12 1 0.333 2 ==> 1
+ 13 1 0.333 0 --> 1
+
+Tree number 82 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #82 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 25 0 0 0
+ 21 25 0 0 1
+ 19 21 2 1 3
+ 18 19 1 1 4
+ 17 18 2 2 3
+ 16 17 2 0 3
+H010 (2) 16 1 1 1
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 1
+H013 (6) 17 0 0 2
+H001 (7) 18 2 0 2
+H014 (5) 19 0 0 0
+ 20 21 2 1 2
+H008 (4) 20 1 0 1
+H006 (12) 20 0 0 1
+ 24 25 0 0 1
+ 23 24 2 2 3
+H007 (3) 23 1 0 2
+ 22 23 0 0 1
+H012 (10) 22 1 1 2
+H011 (13) 22 1 0 1
+H009 (11) 24 2 0 2
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+/------------------------------------------------------------------------- H002
+|
+| /--------------------- H010
+| |
+| | /---------- H003
+| /--------16---------15
+| | | \---------- H005
+| | |
+| /---------17 \--------------------- H000
+| | |
+| /--------18 \------------------------------- H013
+| | |
+25 /---------19 \------------------------------------------ H001
+| | |
+| | \---------------------------------------------------- H014
++--------21
+| | /---------- H008
+| \---------------------------------------------------20
+| \---------- H006
+|
+| /--------------------- H007
+| |
+| /--------23 /---------- H012
+| | \---------22
+\----------------------------------------24 \---------- H011
+ |
+ \------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_21 --> node_19 9 1 0.500 1 --> 2
+ 10 1 1.000 1 ==> 2
+ node_19 --> node_18 8 1 1.000 1 ==> 2
+ node_18 --> node_17 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_17 --> node_16 6 1 0.500 1 --> 2
+ 7 1 0.500 1 --> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_18 --> H001 6 1 0.500 1 --> 2
+ 7 1 0.500 1 --> 2
+ node_21 --> node_20 11 1 0.500 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_20 --> H008 9 1 0.500 1 --> 2
+ node_24 --> node_23 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_23 --> H007 12 1 0.333 2 --> 1
+ node_22 --> H012 11 1 0.500 2 ==> 1
+ node_22 --> H011 13 1 0.333 0 --> 1
+ node_24 --> H009 12 1 0.333 2 --> 1
+ 13 1 0.333 0 --> 1
+
+Tree number 83 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #83 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 23 0 0 0
+ 18 23 2 2 3
+ 17 18 3 3 4
+ 16 17 2 2 3
+H010 (2) 16 1 1 1
+H013 (6) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 1
+H001 (7) 17 0 0 0
+H014 (5) 18 0 0 0
+ 21 23 0 0 1
+ 20 21 2 2 3
+H007 (3) 20 1 0 2
+ 19 20 0 0 1
+H012 (10) 19 1 1 2
+H011 (13) 19 1 0 1
+H009 (11) 21 2 0 2
+ 22 23 2 1 2
+H008 (4) 22 1 1 1
+H006 (12) 22 0 0 0
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+/------------------------------------------------------------------------- H002
+|
+| /----------------------------- H010
+| |
+| +----------------------------- H013
+| |
+| /-------------16 /--------------- H003
+| | +------------15
+| | | \--------------- H005
+| /------------17 |
+| | | \----------------------------- H000
+| | |
++-------------18 \-------------------------------------------- H001
+23 |
+| \---------------------------------------------------------- H014
+|
+| /----------------------------- H007
+| |
+| /-------------20 /--------------- H012
+| | \------------19
++---------------------------21 \--------------- H011
+| |
+| \-------------------------------------------- H009
+|
+| /--------------- H008
+\--------------------------------------------------------22
+ \--------------- H006
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_18 9 1 0.500 1 ==> 2
+ 10 1 1.000 1 ==> 2
+ node_18 --> node_17 6 1 0.500 1 ==> 2
+ 7 1 0.500 1 ==> 2
+ 8 1 1.000 1 ==> 2
+ node_17 --> node_16 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_21 --> node_20 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_20 --> H007 12 1 0.333 2 --> 1
+ node_19 --> H012 11 1 0.500 2 ==> 1
+ node_19 --> H011 13 1 0.333 0 --> 1
+ node_21 --> H009 12 1 0.333 2 --> 1
+ 13 1 0.333 0 --> 1
+ node_23 --> node_22 11 1 0.500 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_22 --> H008 9 1 0.500 1 ==> 2
+
+Tree number 84 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #84 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 23 0 0 0
+ 19 23 2 2 3
+ 18 19 1 1 4
+ 17 18 2 2 3
+ 16 17 2 0 3
+H010 (2) 16 1 1 1
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 1 0 1
+H013 (6) 17 0 0 2
+H001 (7) 18 2 0 2
+H014 (5) 19 0 0 0
+ 22 23 1 1 1
+ 21 22 2 2 3
+ 20 21 1 1 1
+H007 (3) 20 2 1 2
+H011 (13) 20 0 0 1
+H012 (10) 21 1 0 1
+H008 (4) 22 1 1 1
+H006 (12) 22 0 0 0
+H009 (11) 23 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------------ H010
+| |
+| | /------------ H003
+| /----------16----------15
+| | | \------------ H005
+| | |
+| /-----------17 \------------------------ H000
+| | |
+| /----------18 \------------------------------------ H013
+| | |
++----------19 \------------------------------------------------- H001
+23 |
+| \------------------------------------------------------------- H014
+|
+| /------------ H007
+| /----------20
+| | \------------ H011
+| /----------21
+| | \------------------------ H012
+| |
++-----------------------------------22------------------------------------ H008
+| |
+| \------------------------------------ H006
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_19 9 1 0.500 1 ==> 2
+ 10 1 1.000 1 ==> 2
+ node_19 --> node_18 8 1 1.000 1 ==> 2
+ node_18 --> node_17 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_17 --> node_16 6 1 0.500 1 --> 2
+ 7 1 0.500 1 --> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_16 --> H000 13 1 0.333 1 --> 0
+ node_18 --> H001 6 1 0.500 1 --> 2
+ 7 1 0.500 1 --> 2
+ node_23 --> node_22 11 1 0.500 2 ==> 1
+ node_22 --> node_21 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_21 --> node_20 11 1 0.500 1 ==> 2
+ node_20 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_21 --> H012 13 1 0.333 1 --> 0
+ node_22 --> H008 9 1 0.500 1 ==> 2
+ node_23 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 85 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #85 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 22 0 0 0
+ 18 22 2 2 3
+ 17 18 3 3 4
+ 16 17 2 2 3
+H010 (2) 16 1 1 1
+H013 (6) 16 2 2 2
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 1 0 1
+H001 (7) 17 0 0 0
+H014 (5) 18 0 0 0
+ 21 22 1 1 1
+ 20 21 2 2 3
+ 19 20 1 1 1
+H007 (3) 19 2 1 2
+H011 (13) 19 0 0 1
+H012 (10) 20 1 0 1
+H008 (4) 21 1 1 1
+H006 (12) 21 0 0 0
+H009 (11) 22 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+/------------------------------------------------------------------------- H002
+|
+| /----------------------------- H010
+| |
+| +----------------------------- H013
+| |
+| /-------------16 /--------------- H003
+| | +------------15
+| | | \--------------- H005
+| /------------17 |
+| | | \----------------------------- H000
+| | |
++-------------18 \-------------------------------------------- H001
+22 |
+| \---------------------------------------------------------- H014
+|
+| /--------------- H007
+| /------------19
+| | \--------------- H011
+| /-------------20
+| | \----------------------------- H012
+| |
++---------------------------21-------------------------------------------- H008
+| |
+| \-------------------------------------------- H006
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_22 --> node_18 9 1 0.500 1 ==> 2
+ 10 1 1.000 1 ==> 2
+ node_18 --> node_17 6 1 0.500 1 ==> 2
+ 7 1 0.500 1 ==> 2
+ 8 1 1.000 1 ==> 2
+ node_17 --> node_16 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> H013 6 1 0.500 2 ==> 1
+ 7 1 0.500 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_16 --> H000 13 1 0.333 1 --> 0
+ node_22 --> node_21 11 1 0.500 2 ==> 1
+ node_21 --> node_20 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_20 --> node_19 11 1 0.500 1 ==> 2
+ node_19 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_20 --> H012 13 1 0.333 1 --> 0
+ node_21 --> H008 9 1 0.500 1 ==> 2
+ node_22 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 86 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #86 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 24 0 0 0
+ 19 24 2 2 3
+ 18 19 1 1 4
+ 17 18 2 2 3
+ 16 17 2 0 3
+H010 (2) 16 1 1 1
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 1
+H013 (6) 17 0 0 2
+H001 (7) 18 2 0 2
+H014 (5) 19 0 0 0
+ 22 24 0 0 1
+ 21 22 2 2 3
+H007 (3) 21 1 0 2
+ 20 21 0 0 1
+H012 (10) 20 1 1 2
+H011 (13) 20 1 0 1
+H009 (11) 22 2 0 2
+ 23 24 2 1 2
+H008 (4) 23 1 1 1
+H006 (12) 23 0 0 0
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------------ H010
+| |
+| | /------------ H003
+| /----------16----------15
+| | | \------------ H005
+| | |
+| /-----------17 \------------------------ H000
+| | |
+| /----------18 \------------------------------------ H013
+| | |
++----------19 \------------------------------------------------- H001
+24 |
+| \------------------------------------------------------------- H014
+|
+| /------------------------ H007
+| |
+| /----------21 /------------ H012
+| | \----------20
++-----------------------------------22 \------------ H011
+| |
+| \------------------------------------ H009
+|
+| /------------ H008
+\-----------------------------------------------------------23
+ \------------ H006
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_24 --> node_19 9 1 0.500 1 ==> 2
+ 10 1 1.000 1 ==> 2
+ node_19 --> node_18 8 1 1.000 1 ==> 2
+ node_18 --> node_17 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_17 --> node_16 6 1 0.500 1 --> 2
+ 7 1 0.500 1 --> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_18 --> H001 6 1 0.500 1 --> 2
+ 7 1 0.500 1 --> 2
+ node_22 --> node_21 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_21 --> H007 12 1 0.333 2 --> 1
+ node_20 --> H012 11 1 0.500 2 ==> 1
+ node_20 --> H011 13 1 0.333 0 --> 1
+ node_22 --> H009 12 1 0.333 2 --> 1
+ 13 1 0.333 0 --> 1
+ node_24 --> node_23 11 1 0.500 2 ==> 1
+ 13 1 0.333 0 --> 1
+ node_23 --> H008 9 1 0.500 1 ==> 2
+
+Tree number 87 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #87 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 24 0 0 0
+ 19 24 2 2 3
+ 18 19 1 1 4
+ 17 18 2 2 3
+ 16 17 2 0 3
+H010 (2) 16 1 1 1
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 0 0 1
+H013 (6) 17 0 0 2
+H001 (7) 18 2 0 2
+H014 (5) 19 0 0 0
+ 23 24 0 0 1
+ 21 23 2 2 3
+ 20 21 0 0 1
+H007 (3) 20 1 1 2
+H011 (13) 20 1 0 1
+H012 (10) 21 1 0 2
+ 22 23 2 0 2
+H008 (4) 22 1 1 1
+H006 (12) 22 0 0 0
+H009 (11) 24 2 1 2
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------------ H010
+| |
+| | /------------ H003
+| /----------16----------15
+| | | \------------ H005
+| | |
+| /-----------17 \------------------------ H000
+| | |
+| /----------18 \------------------------------------ H013
+| | |
++----------19 \------------------------------------------------- H001
+24 |
+| \------------------------------------------------------------- H014
+|
+| /------------ H007
+| /----------20
+| | \------------ H011
+| /----------21
+| | \------------------------ H012
++-----------------------------------23
+| | /------------ H008
+| \----------------------22
+| \------------ H006
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_24 --> node_19 9 1 0.500 1 ==> 2
+ 10 1 1.000 1 ==> 2
+ node_19 --> node_18 8 1 1.000 1 ==> 2
+ node_18 --> node_17 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_17 --> node_16 6 1 0.500 1 --> 2
+ 7 1 0.500 1 --> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_18 --> H001 6 1 0.500 1 --> 2
+ 7 1 0.500 1 --> 2
+ node_23 --> node_21 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_20 --> H007 12 1 0.333 2 ==> 1
+ node_20 --> H011 13 1 0.333 0 --> 1
+ node_21 --> H012 11 1 0.500 2 --> 1
+ node_23 --> node_22 11 1 0.500 2 --> 1
+ 13 1 0.333 0 --> 1
+ node_22 --> H008 9 1 0.500 1 ==> 2
+ node_24 --> H009 12 1 0.333 2 ==> 1
+ 13 1 0.333 0 --> 1
+
+Tree number 88 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #88 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 24 0 0 0
+ 23 24 0 0 1
+ 20 23 1 1 1
+ 19 20 1 1 3
+ 18 19 1 1 4
+ 17 18 2 2 3
+ 16 17 2 0 3
+H010 (2) 16 1 1 1
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 1 0 1
+H013 (6) 17 0 0 2
+H001 (7) 18 2 0 2
+H014 (5) 19 0 0 0
+H008 (4) 20 1 0 1
+ 22 23 2 2 3
+ 21 22 0 0 1
+H007 (3) 21 2 1 2
+H011 (13) 21 0 0 1
+H012 (10) 22 2 0 2
+H006 (12) 23 1 0 1
+H009 (11) 24 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+/------------------------------------------------------------------------- H002
+|
+| /------------------ H010
+| |
+| | /--------- H003
+| /-------16-------15
+| | | \--------- H005
+| | |
+| /--------17 \------------------ H000
+| | |
+| /-------18 \--------------------------- H013
+| | |
+| /-------19 \------------------------------------- H001
+24 | |
+| /-------20 \---------------------------------------------- H014
+| | |
+| | \------------------------------------------------------- H008
+| |
+| | /--------- H007
++-------23 /-------21
+| | | \--------- H011
+| +--------------------------------------------22
+| | \------------------ H012
+| |
+| \---------------------------------------------------------------- H006
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_23 --> node_20 9 1 1.000 1 ==> 2
+ node_20 --> node_19 10 1 1.000 1 ==> 2
+ node_19 --> node_18 8 1 1.000 1 ==> 2
+ node_18 --> node_17 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_17 --> node_16 6 1 0.500 1 --> 2
+ 7 1 0.500 1 --> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_16 --> H000 13 1 0.333 1 --> 0
+ node_18 --> H001 6 1 0.500 1 --> 2
+ 7 1 0.500 1 --> 2
+ node_20 --> H008 11 1 0.333 2 --> 1
+ node_23 --> node_22 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_21 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_22 --> H012 11 1 0.333 2 --> 1
+ 13 1 0.333 1 --> 0
+ node_23 --> H006 11 1 0.333 2 --> 1
+ node_24 --> H009 12 1 0.333 2 ==> 1
+
+Tree number 89 (rooted using default outgroup)
+
+Branch lengths and linkages for tree #89 (unrooted)
+
+ Assigned Minimum Maximum
+ Connected branch possible possible
+ Node to node length length length
+-------------------------------------------------------------------------
+H002 (1) 25 0 0 0
+ 24 25 0 0 1
+ 19 24 2 1 3
+ 18 19 1 1 4
+ 17 18 2 2 3
+ 16 17 2 0 3
+H010 (2) 16 1 1 1
+ 15 16 1 1 1
+H003 (8) 15 1 1 1
+H005 (9) 15 1 1 1
+H000 (14) 16 1 0 1
+H013 (6) 17 0 0 2
+H001 (7) 18 2 0 2
+H014 (5) 19 0 0 0
+ 23 24 1 1 1
+ 22 23 0 0 1
+ 21 22 2 2 3
+ 20 21 1 1 1
+H007 (3) 20 2 1 2
+H011 (13) 20 0 0 1
+H012 (10) 21 1 0 1
+H006 (12) 22 0 0 0
+H008 (4) 23 1 0 1
+H009 (11) 25 1 1 1
+-------------------------------------------------------------------------
+Sum 23
+
+Tree length = 23
+Consistency index (CI) = 0.5652
+Homoplasy index (HI) = 0.4348
+CI excluding uninformative characters = 0.5238
+HI excluding uninformative characters = 0.4762
+Retention index (RI) = 0.7561
+Rescaled consistency index (RC) = 0.4274
+
+/------------------------------------------------------------------------- H002
+|
+| /--------------------- H010
+| |
+| | /---------- H003
+| /--------16---------15
+| | | \---------- H005
+| | |
+| /---------17 \--------------------- H000
+| | |
+| /--------18 \------------------------------- H013
+| | |
+| /---------19 \------------------------------------------ H001
+25 | |
+| | \---------------------------------------------------- H014
+| |
+| | /---------- H007
+| | /---------20
++--------24 | \---------- H011
+| | /--------21
+| | | \--------------------- H012
+| | /---------22
+| | | \------------------------------- H006
+| \-------------------23
+| \------------------------------------------ H008
+|
+\------------------------------------------------------------------------- H009
+
+Apomorphy lists:
+
+ Branch Character Steps CI Change
+--------------------------------------------------------
+ node_24 --> node_19 9 1 0.500 1 --> 2
+ 10 1 1.000 1 ==> 2
+ node_19 --> node_18 8 1 1.000 1 ==> 2
+ node_18 --> node_17 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_17 --> node_16 6 1 0.500 1 --> 2
+ 7 1 0.500 1 --> 2
+ node_16 --> H010 5 1 1.000 2 ==> 1
+ node_16 --> node_15 3 1 1.000 2 ==> 1
+ node_15 --> H003 4 1 1.000 2 ==> 1
+ node_15 --> H005 12 1 0.333 2 ==> 1
+ node_16 --> H000 13 1 0.333 1 --> 0
+ node_18 --> H001 6 1 0.500 1 --> 2
+ 7 1 0.500 1 --> 2
+ node_24 --> node_23 11 1 0.500 2 ==> 1
+ node_22 --> node_21 1 1 0.500 1 ==> 2
+ 2 1 0.500 1 ==> 2
+ node_21 --> node_20 11 1 0.500 1 ==> 2
+ node_20 --> H007 12 1 0.333 2 ==> 1
+ 13 1 0.333 1 --> 0
+ node_21 --> H012 13 1 0.333 1 --> 0
+ node_23 --> H008 9 1 0.500 1 --> 2
+ node_25 --> H009 12 1 0.333 2 ==> 1
diff --git a/trunk/test/paup/unrooted_present/localisation/test.tree b/trunk/test/paup/unrooted_present/localisation/test.tree
new file mode 100644
index 0000000000000000000000000000000000000000..1fad380102aea1a4291c2cfc3167d809581f8e9b
--- /dev/null
+++ b/trunk/test/paup/unrooted_present/localisation/test.tree
@@ -0,0 +1,121 @@
+#NEXUS
+
+Begin trees; [Treefile saved Tue Jan 10 21:25:45 2006]
+[!
+>Data file = /home/cbardel/recherche/logiciel/altree/test/paup/unrooted_present/localisation/et_caco.paup
+>Heuristic search settings:
+> Optimality criterion = parsimony
+> Character-status summary:
+> 1 character is excluded
+> Of the remaining 12 included characters:
+> All characters are of type 'unord'
+> All characters have equal weight
+> 2 characters are parsimony-uninformative
+> Number of (included) parsimony-informative characters = 10
+> Starting tree(s) obtained via stepwise addition
+> Addition sequence: simple (reference taxon = H002)
+> Number of trees held at each step during stepwise addition = 1
+> Branch-swapping algorithm: tree-bisection-reconnection (TBR)
+> Steepest descent option not in effect
+> 'MaxTrees' setting = 2000 (will not be increased)
+> Branches collapsed (creating polytomies) if maximum branch length is zero
+> 'MulTrees' option in effect
+> Topological constraints not enforced
+> Trees are unrooted
+>
+>Heuristic search completed
+> Total number of rearrangements tried = 90406
+> Score of best tree(s) found = 20
+> Number of trees retained = 89
+> Time used = 1 sec (CPU time = 0.12 sec)
+]
+tree PAUP_1 = [&U] (H002,((((H010,H001,(H003,H005),H000),H013),H007,H012,H011),(H008,H014),H009,H006));
+tree PAUP_2 = [&U] (H002,((((((H010,(H003,H005),H000),H001),H013),H014),H008),(H007,H012,H011),H009,H006));
+tree PAUP_3 = [&U] (H002,((((H010,H001,(H003,H005),H000),H013),H007,H012,H011),((H008,H014),H006),H009));
+tree PAUP_4 = [&U] (H002,((((((H010,H001,(H003,H005),H000),H013),H007,H011),H012),(H008,H014),H006),H009));
+tree PAUP_5 = [&U] (H002,((((((H010,H001,(H003,H005),H000),H013),H007,H011),H012),((H008,H014),H006)),H009));
+tree PAUP_6 = [&U] (H002,(((((H010,H001,(H003,H005),H000),H013),(H007,H012,H011)),(H008,H014)),H009,H006));
+tree PAUP_7 = [&U] (H002,(((((H010,H001,(H003,H005),H000),H013),(H007,H012,H011)),H008,H014),H009,H006));
+tree PAUP_8 = [&U] (H002,(((((((H010,H001,(H003,H005),H000),H013),(H007,H012,H011)),H014),H008),H006),H009));
+tree PAUP_9 = [&U] (H002,((((((H010,H001,(H003,H005),H000),H013),H012,H011),H007),H009),((H008,H014),H006)));
+tree PAUP_10 = [&U] (H002,((((H010,H001,(H003,H005),H000),H013),H007,H012,H011),((H008,H006),H014),H009));
+tree PAUP_11 = [&U] (H002,(((((((H010,H001,(H003,H005),H000),H013),H007,H011),H012),H006),(H008,H014)),H009));
+tree PAUP_12 = [&U] (H002,((((H010,H001,(H003,H005),H000),H013),H007,H012,H011),(H008,H006),H014,H009));
+tree PAUP_13 = [&U] (H002,((((((H010,(H003,H005),H000),H013),H001),H014),H008),(H007,H012,H011),H009,H006));
+tree PAUP_14 = [&U] (H002,(((((H010,H013,(H003,H005),H000),H001),H014),H008),(H007,H012,H011),H009,H006));
+tree PAUP_15 = [&U] (H002,(((((H010,H001,(H003,H005),H000),H013),H014),H008),(H007,H012,H011),H009,H006));
+tree PAUP_16 = [&U] (H002,(((((H010,(H003,H005),H000),H001),H013),H014),(H007,H012,H011),(H008,H006),H009));
+tree PAUP_17 = [&U] (H002,((((((H010,(H003,H005),H000),H001),H013),H014),H008),(((H007,H011),H012),H006),H009));
+tree PAUP_18 = [&U] (H002,((((((H010,H001,(H003,H005),H000),H013),(H007,H012,H011)),H014),H008),H009,H006));
+tree PAUP_19 = [&U] (H002,((((((H010,(H003,H005),H000),H001),H013),H014),H008),((H007,(H012,H011)),H009),H006));
+tree PAUP_20 = [&U] (H002,(((((((H010,(H003,H005),H000),H001),H013),H014),H008),((H007,H011),H012),H006),H009));
+tree PAUP_21 = [&U] (H002,(((((((H010,(H003,H005),H000),H001),H013),H014),H008),H006),(H007,H012,H011),H009));
+tree PAUP_22 = [&U] (H002,((((((H010,(H003,H005),H000),H001),H013),H014),(H008,H006)),(H007,H012,H011),H009));
+tree PAUP_23 = [&U] (H002,((((((((H010,(H003,H005),H000),H001),H013),H014),H008),H006),((H007,H011),H012)),H009));
+tree PAUP_24 = [&U] (H002,((((((H010,H001,(H003,H005),H000),H013),H014),H008),H006),(H007,H012,H011),H009));
+tree PAUP_25 = [&U] (H002,(((((H010,H001,(H003,H005),H000),H013),(H007,H012,H011)),((H008,H006),H014)),H009));
+tree PAUP_26 = [&U] (H002,(((((H010,H001,(H003,H005),H000),H013),(H007,H012,H011)),H014),(H008,H006),H009));
+tree PAUP_27 = [&U] (H002,(((((H010,H001,(H003,H005),H000),H013),H014),(H007,H012,H011)),(H008,H006),H009));
+tree PAUP_28 = [&U] (H002,((((((H010,H013,(H003,H005),H000),H001),H014),H008),H006),(H007,H012,H011),H009));
+tree PAUP_29 = [&U] (H002,((((((((H010,H001,(H003,H005),H000),H013),H007,H011),H012),H006),H008),H014),H009));
+tree PAUP_30 = [&U] (H002,((((((H010,H001,(H003,H005),H000),H013),H007,H011),H012),H006),(H008,H014),H009));
+tree PAUP_31 = [&U] (H002,((((((H010,H001,(H003,H005),H000),H013),H007,H011),H012),(H008,H006)),H014,H009));
+tree PAUP_32 = [&U] (H002,(((((((H010,H001,(H003,H005),H000),H013),H014),H007,H011),H012),(H008,H006)),H009));
+tree PAUP_33 = [&U] (H002,(((((((H010,H001,(H003,H005),H000),H013),H014),H008),H006),((H007,H011),H012)),H009));
+tree PAUP_34 = [&U] (H002,(((((((H010,H013,(H003,H005),H000),H001),H014),H008),H006),((H007,H011),H012)),H009));
+tree PAUP_35 = [&U] (H002,((((((H010,H001,(H003,H005),H000),H013),H012,H011),H007),H009),(H008,H014),H006));
+tree PAUP_36 = [&U] (H002,(((((H010,H001,(H003,H005),H000),H013),(H007,H012,H011)),(H008,H006),H014),H009));
+tree PAUP_37 = [&U] (H002,(((((H010,H001,(H003,H005),H000),H013),H014),H007,H012,H011),(H008,H006),H009));
+tree PAUP_38 = [&U] (H002,(((((((H010,H001,(H003,H005),H000),H013),H014),H007,H011),H012),H008,H006),H009));
+tree PAUP_39 = [&U] (H002,(((((((H010,H001,(H003,H005),H000),H013),H014),H012,H011),H007),H009),(H008,H006)));
+tree PAUP_40 = [&U] (H002,((((((H010,H001,(H003,H005),H000),H013),H014),H008),((H007,H011),H012),H006),H009));
+tree PAUP_41 = [&U] (H002,((((((H010,H001,(H003,H005),H000),H013),H014),H008),H006),((H007,(H012,H011)),H009)));
+tree PAUP_42 = [&U] (H002,((((((H010,H001,(H003,H005),H000),H013),H014),H008),(((H007,H011),H012),H006)),H009));
+tree PAUP_43 = [&U] (H002,((((((H010,H001,(H003,H005),H000),H013),(H007,H012,H011)),H014),(H008,H006)),H009));
+tree PAUP_44 = [&U] (H002,((((((H010,H001,(H003,H005),H000),H013),H012,H011),H007),H009),(H008,H006),H014));
+tree PAUP_45 = [&U] (H002,((((((H010,H001,(H003,H005),H000),H013),H012,H011),H007),H009),((H008,H006),H014)));
+tree PAUP_46 = [&U] (H002,((((((H010,H013,(H003,H005),H000),H001),H014),H008),H006),((H007,(H012,H011)),H009)));
+tree PAUP_47 = [&U] (H002,((((((H010,H001,(H003,H005),H000),H013),H007,H011),H012),H008,H006),H014,H009));
+tree PAUP_48 = [&U] (H002,(((((H010,H001,(H003,H005),H000),H013),H014),(H008,H006)),(H007,H012,H011),H009));
+tree PAUP_49 = [&U] (H002,(((((H010,H013,(H003,H005),H000),H001),H014),(H008,H006)),(H007,H012,H011),H009));
+tree PAUP_50 = [&U] (H002,((((((H010,H013,(H003,H005),H000),H001),H014),H008),(((H007,H011),H012),H006)),H009));
+tree PAUP_51 = [&U] (H002,((((((H010,(H003,H005),H000),H001),H013),H014),(H007,H012,H011)),(H008,H006),H009));
+tree PAUP_52 = [&U] (H002,(((((H010,(H003,H005),H000),H013),H001),H014),(H007,H012,H011),(H008,H006),H009));
+tree PAUP_53 = [&U] (H002,(((((((H010,(H003,H005),H000),H013),H001),H014),H008),H006),(H007,H012,H011),H009));
+tree PAUP_54 = [&U] (H002,(((((((H010,(H003,H005),H000),H013),H001),H014),H008),H006),((H007,(H012,H011)),H009)));
+tree PAUP_55 = [&U] (H002,((((((H010,(H003,H005),H000),H013),H001),H014),(H008,H006)),(H007,H012,H011),H009));
+tree PAUP_56 = [&U] (H002,((((((H010,(H003,H005),H000),H013),H001),H014),H008),((H007,(H012,H011)),H009),H006));
+tree PAUP_57 = [&U] (H002,((((((H010,(H003,H005),H000),H013),H001),H014),H008),(((H007,H011),H012),H006),H009));
+tree PAUP_58 = [&U] (H002,((((H010,H013,(H003,H005),H000),H001),H014),(H007,H012,H011),(H008,H006),H009));
+tree PAUP_59 = [&U] (H002,(((((H010,H013,(H003,H005),H000),H001),H014),H008),((H007,(H012,H011)),H009),H006));
+tree PAUP_60 = [&U] (H002,(((((H010,H013,(H003,H005),H000),H001),H014),H008),(((H007,H011),H012),H006),H009));
+tree PAUP_61 = [&U] (H002,((((H010,H001,(H003,H005),H000),H013),H014),(H007,H012,H011),(H008,H006),H009));
+tree PAUP_62 = [&U] (H002,(((((H010,H001,(H003,H005),H000),H013),H014),H008),((H007,(H012,H011)),H009),H006));
+tree PAUP_63 = [&U] (H002,(((((H010,H001,(H003,H005),H000),H013),H014),H008),(((H007,H011),H012),H006),H009));
+tree PAUP_64 = [&U] (H002,((((((H010,(H003,H005),H000),H001),H013),H014),(H008,H006)),((H007,(H012,H011)),H009)));
+tree PAUP_65 = [&U] (H002,(((((H010,(H003,H005),H000),H001),H013),H014),((H007,(H012,H011)),H009),(H008,H006)));
+tree PAUP_66 = [&U] (H002,(((((H010,(H003,H005),H000),H001),H013),H014),(((H007,H011),H012),H008,H006),H009));
+tree PAUP_67 = [&U] (H002,(((((H010,(H003,H005),H000),H001),H013),H014),(((H007,H011),H012),(H008,H006)),H009));
+tree PAUP_68 = [&U] (H002,(((((((H010,(H003,H005),H000),H001),H013),H014),H008),(((H007,H011),H012),H006)),H009));
+tree PAUP_69 = [&U] (H002,(((((((H010,(H003,H005),H000),H001),H013),H014),H008),H006),((H007,(H012,H011)),H009)));
+tree PAUP_70 = [&U] (H002,((((((H010,(H003,H005),H000),H001),H013),H014),((((H007,H011),H012),H006),H008)),H009));
+tree PAUP_71 = [&U] (H002,(((((((H010,(H003,H005),H000),H013),H001),H014),H008),(((H007,H011),H012),H006)),H009));
+tree PAUP_72 = [&U] (H002,((((((((H010,(H003,H005),H000),H013),H001),H014),H008),H006),((H007,H011),H012)),H009));
+tree PAUP_73 = [&U] (H002,((((H010,H001,(H003,H005),H000),H013),H014),((H007,(H012,H011)),H009),(H008,H006)));
+tree PAUP_74 = [&U] (H002,((((H010,H001,(H003,H005),H000),H013),H014),(((H007,H011),H012),(H008,H006)),H009));
+tree PAUP_75 = [&U] (H002,((((H010,H001,(H003,H005),H000),H013),H014),(((H007,H011),H012),H008,H006),H009));
+tree PAUP_76 = [&U] (H002,(((((H010,H001,(H003,H005),H000),H013),H014),((((H007,H011),H012),H006),H008)),H009));
+tree PAUP_77 = [&U] (H002,(((((H010,H001,(H003,H005),H000),H013),H014),(H008,H006)),((H007,(H012,H011)),H009)));
+tree PAUP_78 = [&U] (H002,(((((H010,H013,(H003,H005),H000),H001),H014),(H008,H006)),((H007,(H012,H011)),H009)));
+tree PAUP_79 = [&U] (H002,((((((H010,H013,(H003,H005),H000),H001),H014),H008),((H007,H011),H012),H006),H009));
+tree PAUP_80 = [&U] (H002,(((((H010,H013,(H003,H005),H000),H001),H014),((((H007,H011),H012),H006),H008)),H009));
+tree PAUP_81 = [&U] (H002,((((H010,H013,(H003,H005),H000),H001),H014),(((H007,H011),H012),(H008,H006)),H009));
+tree PAUP_82 = [&U] (H002,((((((H010,(H003,H005),H000),H013),H001),H014),(H008,H006)),((H007,(H012,H011)),H009)));
+tree PAUP_83 = [&U] (H002,((((H010,H013,(H003,H005),H000),H001),H014),((H007,(H012,H011)),H009),(H008,H006)));
+tree PAUP_84 = [&U] (H002,(((((H010,(H003,H005),H000),H013),H001),H014),(((H007,H011),H012),H008,H006),H009));
+tree PAUP_85 = [&U] (H002,((((H010,H013,(H003,H005),H000),H001),H014),(((H007,H011),H012),H008,H006),H009));
+tree PAUP_86 = [&U] (H002,(((((H010,(H003,H005),H000),H013),H001),H014),((H007,(H012,H011)),H009),(H008,H006)));
+tree PAUP_87 = [&U] (H002,(((((H010,(H003,H005),H000),H013),H001),H014),(((H007,H011),H012),(H008,H006)),H009));
+tree PAUP_88 = [&U] (H002,(((((((H010,(H003,H005),H000),H013),H001),H014),H008),((H007,H011),H012),H006),H009));
+tree PAUP_89 = [&U] (H002,((((((H010,(H003,H005),H000),H013),H001),H014),((((H007,H011),H012),H006),H008)),H009));
+End;
diff --git a/trunk/test/phylip/ancestor_absent/association/1_trio_phy.asso b/trunk/test/phylip/ancestor_absent/association/1_trio_phy.asso
new file mode 100644
index 0000000000000000000000000000000000000000..6879c601c31f9ba9470d4428a7c2873d2e263c9c
--- /dev/null
+++ b/trunk/test/phylip/ancestor_absent/association/1_trio_phy.asso
@@ -0,0 +1,128 @@
+
+ /----* H030 case/control:1/1
+ | Site: 9 Sens: 0-->1
+ |----* H006 case/control:23/19
+ | Site: 2 Sens: 1-->0
+-----* 10+(27)+(1) case/control:200/200
+ |
+ | [0] ddl=3 chi2=0.52 p_value_chi2=0.86
+ | [1] ddl=6 chi2=4.29 p_value_chi2=0.674
+ | [2] ddl=9 chi2=15.63 p_value_chi2=0.041
+ | [3] ddl=15 chi2=22.00 p_value_chi2=0.068
+ | [4] ddl=18 chi2=31.34 p_value_chi2=0.011
+ | [5] ddl=19 chi2=31.42 p_value_chi2=0.02
+ | [6] ddl=20 chi2=39.94 p_value_chi2=0.001
+ | [7] ddl=21 chi2=50.63 p_value_chi2=0
+ | [8] ddl=23 chi2=52.46 p_value_chi2=0
+ | [9] ddl=24 chi2=52.99 p_value_chi2=0
+ | [10] ddl=25 chi2=53.21 p_value_chi2=0.001
+ | [11] ddl=28 chi2=59.22 p_value_chi2=0
+ | [12] ddl=31 chi2=61.68 p_value_chi2=0
+ | [13] ddl=34 chi2=68.34 p_value_chi2=0
+ | /----* H035 case/control:1/0
+ | | Site: 10 Sens: 1-->0
+ | |----* H007 case/control:25/36
+ |----* 17+(22) case/control:54/58
+ | | Site: 4 Sens: 0-->1
+ | | /----* H023 case/control:1/5
+ | | | /----* H021 case/control:11/2
+ | | | | Site: 1 Sens: 1-->0
+ | | | | Site: 5 Sens: 0-->1
+ | | | /----* 26 case/control:16/12
+ | | | | | Site: 8 Sens: 0-->1
+ | | | | \----* H009 case/control:5/10
+ | | | |----* H012 case/control:1/2
+ | | |----* 16+(29) case/control:26/17
+ | | | | Site: 6 Sens: 1-->0
+ | | | \----* H002 case/control:9/3
+ | | | Site: 5 Sens: 0-->1
+ | \----* 6+(8) case/control:28/22
+ | | Site: 3 Sens: 0-->1
+ | \----* H026 case/control:1/0
+ | Site: 1 Sens: 1-->0
+ | /----* H025 case/control:2/3
+ \----* 25 case/control:122/122
+ | Site: 1 Sens: 1-->0
+ | /----* H004 case/control:11/2
+ \----* 2 case/control:120/119
+ | Site: 5 Sens: 0-->1
+ | /----* H005 case/control:2/2
+ | | Site: 10 Sens: 1-->0
+ | |----* H008 case/control:28/19
+ | |----* H031 case/control:1/0
+ | | Site: 8 Sens: 0-->1
+ \----* 19+(30)+(7+(28)) case/control:109/117
+ | Site: 6 Sens: 1-->0
+ | /----* H032 case/control:0/1
+ | | Site: 7 Sens: 0-->1
+ |----* 24 case/control:2/3
+ | | Site: 4 Sens: 0-->1
+ | \----* H016 case/control:2/2
+ | /----* H024 case/control:1/0
+ \----* 14 case/control:76/93
+ | Site: 9 Sens: 0-->1
+ | /----* H013 case/control:15/5
+ | /----* 23 case/control:72/90
+ | | | Site: 10 Sens: 1-->0
+ | | | /----* H022 case/control:9/1
+ | | \----* 32 case/control:57/85
+ | | | Site: 6 Sens: 0-->1
+ | | | /----* H029 case/control:1/3
+ | | | | Site: 10 Sens: 0-->1
+ | | | |----* H034 case/control:1/0
+ | | \----* 4+(20) case/control:48/84
+ | | | Site: 5 Sens: 1-->0
+ | | | /----* H033 case/control:0/1
+ | | \----* 18 case/control:46/81
+ | | | Site: 4 Sens: 0-->1
+ | | | /----* H010 case/control:1/3
+ | | \----* 12 case/control:46/80
+ | | | Site: 1 Sens: 0-->1
+ | | | /----* H011 case/control:3/8
+ | | | |----* H003 case/control:2/0
+ | | | | Site: 5 Sens: 0-->1
+ | | \----* 21+(31)+(5) case/control:45/77
+ | | | Site: 10 Sens: 0-->1
+ | | | /----* H014 case/control:2/3
+ | | | | Site: 1 Sens: 1-->0
+ | | | |----* H017 case/control:0/8
+ | | |----* 33+(15) case/control:3/13
+ | | | | Site: 3 Sens: 0-->1
+ | | | \----* H027 case/control:1/2
+ | | | Site: 6 Sens: 1-->0
+ | | | Site: 10 Sens: 1-->0
+ | | | /----* H018 case/control:2/2
+ | | \----* 34 case/control:37/56
+ | | | Site: 4 Sens: 1-->0
+ | | | /----* H028 case/control:4/0
+ | | | | Site: 8 Sens: 1-->0
+ | | | |----* H001 case/control:24/39
+ | | \----* 11+(13)+(9) case/control:35/54
+ | | | Site: 2 Sens: 1-->0
+ | | |----* H015 case/control:2/6
+ | | | Site: 9 Sens: 1-->0
+ | | \----* H020 case/control:5/9
+ | | Site: 10 Sens: 1-->0
+ \----* 3 case/control:75/93
+ | Site: 8 Sens: 0-->1
+ | Site: 7 Sens: 0-->1
+ \----* H019 case/control:3/3
+
+ Number of permutation: 1
+
+p_val for each level:
+level 1 p-value (non corrected) 0.5
+level 2 p-value (non corrected) 0.5
+level 3 p-value (non corrected) 0
+level 4 p-value (non corrected) 0
+level 5 p-value (non corrected) 0
+level 6 p-value (non corrected) 0
+level 7 p-value (non corrected) 0
+level 8 p-value (non corrected) 0
+level 9 p-value (non corrected) 0
+level 10 p-value (non corrected) 0
+level 11 p-value (non corrected) 0
+level 12 p-value (non corrected) 0
+level 13 p-value (non corrected) 0
+level 14 p-value (non corrected) 0
+corrected minimal p_value in the tree: 0.5
diff --git a/trunk/test/phylip/ancestor_absent/association/ancestors b/trunk/test/phylip/ancestor_absent/association/ancestors
new file mode 100644
index 0000000000000000000000000000000000000000..10a7ef85ccddae707062661934a377ba97061cd5
--- /dev/null
+++ b/trunk/test/phylip/ancestor_absent/association/ancestors
@@ -0,0 +1 @@
+1100010001
diff --git a/trunk/test/phylip/ancestor_absent/association/nb_cas_controls.txt b/trunk/test/phylip/ancestor_absent/association/nb_cas_controls.txt
new file mode 100644
index 0000000000000000000000000000000000000000..0fcc5d715cf67c32674f580140c8b7edb315f08b
--- /dev/null
+++ b/trunk/test/phylip/ancestor_absent/association/nb_cas_controls.txt
@@ -0,0 +1,35 @@
+H019 m003 c003
+H026 m001 c000
+H004 m011 c002
+H020 m005 c009
+H034 m001 c000
+H027 m001 c002
+H023 m001 c005
+H016 m002 c002
+H002 m009 c003
+H015 m002 c006
+H006 m023 c019
+H001 m024 c039
+H010 m001 c003
+H028 m004 c000
+H024 m001 c000
+H017 m000 c008
+H009 m005 c010
+H007 m025 c036
+H033 m000 c001
+H008 m028 c019
+H029 m001 c003
+H003 m002 c000
+H035 m001 c000
+H013 m015 c005
+H032 m000 c001
+H025 m002 c003
+H021 m011 c002
+H030 m001 c001
+H031 m001 c000
+H012 m001 c002
+H005 m002 c002
+H011 m003 c008
+H022 m009 c001
+H014 m002 c003
+H018 m002 c002
diff --git a/trunk/test/phylip/ancestor_absent/association/outfile b/trunk/test/phylip/ancestor_absent/association/outfile
new file mode 100644
index 0000000000000000000000000000000000000000..d1a74c19976a5e233005762d76c61e67cfc97dde
--- /dev/null
+++ b/trunk/test/phylip/ancestor_absent/association/outfile
@@ -0,0 +1,15010 @@
+
+Mixed parsimony algorithm, version 3.63
+
+Wagner parsimony method
+
+
+
+
+ 100 trees in all found
+
+
+
+
+ +--H030
+ +-------------------------------------------------------------------------------------------------27
+ ! +--H006
+ !
+ ! +--H035
+ ! +----------------22
+ ! ! +--H007
+ ! !
+-10 +-------------------------------------------------------------------------17 +--------------H023
+ ! ! ! !
+ ! ! ! ! +--H021
+ ! ! +-----6 +----26
+ ! ! ! ! +--H009
+ ! ! ! +-16
+ ! ! ! ! ! +--H012
+ +-----1 +--8 +----29
+ ! ! +--H002
+ ! !
+ ! +-----------H026
+ !
+ ! +-----------------------------------------------------------------------H025
+ ! !
+ ! ! +--------------------------------------------------------------------H004
+ +----------------------25 !
+ ! ! +--H005
+ ! ! +-------------------------------------------------------------30
+ +--2 ! +--H008
+ ! !
+ ! ! +-----H031
+ ! ! +----------------------------------------------------28
+ +-19 ! ! +--H032
+ ! ! +-24
+ ! ! +--H016
+ ! !
+ ! ! +--------------------------------------------------H024
+ ! ! !
+ +-----7 ! +--------------------------------------------H013
+ ! ! !
+ ! ! +-23 +-----------------------------------------H022
+ ! ! ! ! !
+ ! ! ! +-32 +--H029
+ ! ! ! ! +----------------------------------20
+ ! ! ! ! ! +--H034
+ +-------14 ! +--4
+ ! ! ! +--------------------------------H033
+ ! ! ! !
+ ! ! +----18 +-----------------------------H010
+ ! ! ! !
+ ! ! ! ! +--H011
+ ! ! +-12 +----------------------31
+ ! ! ! ! +--H003
+ ! ! ! !
+ ! ! +-21 +-----H014
+ +--3 ! +-------------33
+ ! ! ! ! +--H017
+ ! ! ! +-15
+ ! +-----5 +--H027
+ ! !
+ ! ! +-----------H018
+ ! ! !
+ ! +-------34 +--H028
+ ! ! +----13
+ ! ! ! +--H001
+ ! +-11
+ ! ! +--H015
+ ! +-----9
+ ! +--H020
+ !
+ +-----------------------------------------------H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 10 no ..... .....
+ 10 27 no ..... .....
+ 27 H030 yes ..... ...1.
+ 27 H006 yes .0... .....
+ 10 1 no ..... .....
+ 1 17 yes ...1. .....
+ 17 22 no ..... .....
+ 22 H035 yes ..... ....0
+ 22 H007 no ..... .....
+ 17 6 yes ..1.. .....
+ 6 H023 no ..... .....
+ 6 8 no ..... .....
+ 8 16 yes ..... 0....
+ 16 26 yes ..... ..1..
+ 26 H021 yes 0...1 .....
+ 26 H009 no ..... .....
+ 16 29 no ..... .....
+ 29 H012 no ..... .....
+ 29 H002 yes ....1 .....
+ 8 H026 yes 0.... .....
+ 1 25 yes 0.... .....
+ 25 H025 no ..... .....
+ 25 2 yes ....1 .....
+ 2 H004 no ..... .....
+ 2 19 yes ..... 0....
+ 19 30 no ..... .....
+ 30 H005 yes ..... ....0
+ 30 H008 no ..... .....
+ 19 7 no ..... .....
+ 7 28 no ..... .....
+ 28 H031 yes ..... ..1..
+ 28 24 yes ...1. .....
+ 24 H032 yes ..... .1...
+ 24 H016 no ..... .....
+ 7 14 yes ..... ...1.
+ 14 H024 no ..... .....
+ 14 3 yes ..... .11..
+ 3 23 yes ..... ....0
+ 23 H013 no ..... .....
+ 23 32 yes ..... 1....
+ 32 H022 no ..... .....
+ 32 4 yes ....0 .....
+ 4 20 no ..... .....
+ 20 H029 yes ..... ....1
+ 20 H034 no ..... .....
+ 4 18 yes ...1. .....
+ 18 H033 no ..... .....
+ 18 12 yes 1.... .....
+ 12 H010 no ..... .....
+ 12 21 yes ..... ....1
+ 21 31 no ..... .....
+ 31 H011 no ..... .....
+ 31 H003 yes ....1 .....
+ 21 5 no ..... .....
+ 5 33 yes ..1.. .....
+ 33 H014 yes 0.... .....
+ 33 15 no ..... .....
+ 15 H017 no ..... .....
+ 15 H027 yes ..... 0...0
+ 5 34 yes ...0. .....
+ 34 H018 no ..... .....
+ 34 11 yes .0... .....
+ 11 13 no ..... .....
+ 13 H028 yes ..... ..0..
+ 13 H001 no ..... .....
+ 11 9 no ..... .....
+ 9 H015 yes ..... ...0.
+ 9 H020 yes ..... ....0
+ 3 H019 no ..... .....
+
+
+
+
+
+ +-----------------------------------------------------------------------------------------------------H030
+ !
+ ! +--------------------------------------------------------------------------------------------------H006
+ ! !
+-27 ! +--H035
+ ! ! +----------------22
+ ! ! ! +--H007
+ ! ! !
+ +-10 +-------------------------------------------------------------------------17 +--------------H023
+ ! ! ! !
+ ! ! ! ! +--------H012
+ ! ! +-----6 !
+ ! ! ! +-29 +--H021
+ ! ! ! ! ! +-26
+ ! ! ! ! +-16 +--H009
+ +--1 +--8 !
+ ! ! +-----H002
+ ! !
+ ! +-----------H026
+ !
+ ! +-----------------------------------------------------------------------H025
+ ! !
+ ! ! +--------------------------------------------------------------------H004
+ +----------------------25 !
+ ! ! +--H005
+ ! ! +-------------------------------------------------------------30
+ +--2 ! +--H008
+ ! !
+ ! ! +-----H024
+ ! ! +----------------------------------------------------14
+ +-19 ! ! +--H032
+ ! ! +-24
+ ! ! +--H016
+ ! !
+ ! ! +--------------------------------------------------H031
+ ! ! !
+ +-----7 ! +--------------------------------------------H013
+ ! ! !
+ ! ! +-23 +-----------------------------------------H022
+ ! ! ! ! !
+ ! ! ! +-32 +--------------------------------------H029
+ ! ! ! ! !
+ ! ! ! +-20 +-----------------------------------H034
+ +-------28 ! ! !
+ ! ! +--4 +--------------------------------H033
+ ! ! ! !
+ ! ! ! ! +-----------------------------H010
+ ! ! +-18 !
+ ! ! ! ! +-----------H011
+ ! ! ! ! +-------------31
+ ! ! +-12 ! ! +--------H003
+ ! ! ! ! +-21
+ ! ! ! ! ! +-----H014
+ +--3 ! ! +-33
+ ! +--5 ! +--H017
+ ! ! +-15
+ ! ! +--H027
+ ! !
+ ! ! +-----------H018
+ ! +-------------34
+ ! ! +--------H028
+ ! +-13
+ ! ! +-----H001
+ ! +-11
+ ! ! +--H015
+ ! +--9
+ ! +--H020
+ !
+ +-----------------------------------------------H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 27 no ..... .....
+ 27 H030 yes ..... ...1.
+ 27 10 no ..... .....
+ 10 H006 yes .0... .....
+ 10 1 no ..... .....
+ 1 17 yes ...1. .....
+ 17 22 no ..... .....
+ 22 H035 yes ..... ....0
+ 22 H007 no ..... .....
+ 17 6 yes ..1.. .....
+ 6 H023 no ..... .....
+ 6 8 no ..... .....
+ 8 29 yes ..... 0....
+ 29 H012 no ..... .....
+ 29 16 maybe ....? .....
+ 16 26 yes ..... ..1..
+ 26 H021 yes 0...1 .....
+ 26 H009 maybe ....0 .....
+ 16 H002 maybe ....1 .....
+ 8 H026 yes 0.... .....
+ 1 25 yes 0.... .....
+ 25 H025 no ..... .....
+ 25 2 yes ....1 .....
+ 2 H004 no ..... .....
+ 2 19 yes ..... 0....
+ 19 30 no ..... .....
+ 30 H005 yes ..... ....0
+ 30 H008 no ..... .....
+ 19 7 no ..... .....
+ 7 14 no ..... .....
+ 14 H024 yes ..... ...1.
+ 14 24 yes ...1. .....
+ 24 H032 yes ..... .1...
+ 24 H016 no ..... .....
+ 7 28 yes ..... ..1..
+ 28 H031 no ..... .....
+ 28 3 yes ..... .1.1.
+ 3 23 yes ..... ....0
+ 23 H013 no ..... .....
+ 23 32 yes ..... 1....
+ 32 H022 no ..... .....
+ 32 20 yes ....0 .....
+ 20 H029 yes ..... ....1
+ 20 4 no ..... .....
+ 4 H034 no ..... .....
+ 4 18 yes ...1. .....
+ 18 H033 no ..... .....
+ 18 12 yes 1.... .....
+ 12 H010 no ..... .....
+ 12 5 yes ..... ....1
+ 5 31 no ..... .....
+ 31 H011 no ..... .....
+ 31 21 no ..... .....
+ 21 H003 yes ....1 .....
+ 21 33 yes ..1.. .....
+ 33 H014 yes 0.... .....
+ 33 15 no ..... .....
+ 15 H017 no ..... .....
+ 15 H027 yes ..... 0...0
+ 5 34 yes ...0. .....
+ 34 H018 no ..... .....
+ 34 13 yes .0... .....
+ 13 H028 yes ..... ..0..
+ 13 11 no ..... .....
+ 11 H001 no ..... .....
+ 11 9 no ..... .....
+ 9 H015 yes ..... ...0.
+ 9 H020 yes ..... ....0
+ 3 H019 no ..... .....
+
+
+
+
+
+ +-----------------------------------------------------------------------------------------------------H030
+ !
+ ! +--------------------------------------------------------------------------------------------------H006
+ ! !
+-27 ! +--H035
+ ! ! +----------------22
+ ! ! ! +--H007
+ ! ! !
+ +-10 +-------------------------------------------------------------------------17 +--------------H023
+ ! ! ! !
+ ! ! ! ! +--------H012
+ ! ! +-----6 !
+ ! ! ! +-29 +--H021
+ ! ! ! ! ! +-26
+ ! ! ! ! +-16 +--H009
+ +--1 +--8 !
+ ! ! +-----H002
+ ! !
+ ! +-----------H026
+ !
+ ! +-----------------------------------------------------------------------H025
+ ! !
+ ! ! +--------------------------------------------------------------------H004
+ +----------------------25 !
+ ! ! +--H005
+ ! ! +----30
+ ! ! ! +--H008
+ +--2 +-------------------------------------------------------19
+ ! ! ! +--H032
+ ! ! +----24
+ ! ! +--H016
+ ! !
+ +--7 +-----------------------------------------------------H024
+ ! !
+ ! ! +--------------------------------------------------H031
+ ! ! !
+ ! ! ! +--------------------------------------------H013
+ +----------14 ! !
+ ! ! +-23 +-----------------------------------------H022
+ ! ! ! ! !
+ ! ! ! +-32 +--------------------------------------H029
+ ! ! ! ! !
+ ! ! ! +-20 +-----------------------------------H034
+ +-28 ! ! !
+ ! ! +--4 +--------------------------------H033
+ ! ! ! !
+ ! ! ! ! +-----------------------------H010
+ ! ! +-18 !
+ ! ! ! ! +-----------H011
+ ! ! ! ! +-------------31
+ ! ! +-12 ! ! +--------H003
+ ! ! ! ! +-21
+ ! ! ! ! ! +-----H014
+ +--3 ! ! +-33
+ ! +--5 ! +--H017
+ ! ! +-15
+ ! ! +--H027
+ ! !
+ ! ! +-----------H018
+ ! +-------------34
+ ! ! +--------H028
+ ! +-13
+ ! ! +-----H001
+ ! +-11
+ ! ! +--H015
+ ! +--9
+ ! +--H020
+ !
+ +-----------------------------------------------H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 27 no ..... .....
+ 27 H030 yes ..... ...1.
+ 27 10 no ..... .....
+ 10 H006 yes .0... .....
+ 10 1 no ..... .....
+ 1 17 yes ...1. .....
+ 17 22 no ..... .....
+ 22 H035 yes ..... ....0
+ 22 H007 no ..... .....
+ 17 6 yes ..1.. .....
+ 6 H023 no ..... .....
+ 6 8 no ..... .....
+ 8 29 yes ..... 0....
+ 29 H012 no ..... .....
+ 29 16 maybe ....? .....
+ 16 26 yes ..... ..1..
+ 26 H021 yes 0...1 .....
+ 26 H009 maybe ....0 .....
+ 16 H002 maybe ....1 .....
+ 8 H026 yes 0.... .....
+ 1 25 yes 0.... .....
+ 25 H025 no ..... .....
+ 25 2 yes ....1 .....
+ 2 H004 no ..... .....
+ 2 7 yes ..... 0....
+ 7 19 no ..... .....
+ 19 30 no ..... .....
+ 30 H005 yes ..... ....0
+ 30 H008 no ..... .....
+ 19 24 yes ...1. .....
+ 24 H032 yes ..... .1...
+ 24 H016 no ..... .....
+ 7 14 maybe ..... ...?.
+ 14 H024 maybe ..... ...1.
+ 14 28 yes ..... ..1..
+ 28 H031 maybe ..... ...0.
+ 28 3 yes ..... .1.1.
+ 3 23 yes ..... ....0
+ 23 H013 no ..... .....
+ 23 32 yes ..... 1....
+ 32 H022 no ..... .....
+ 32 20 yes ....0 .....
+ 20 H029 yes ..... ....1
+ 20 4 no ..... .....
+ 4 H034 no ..... .....
+ 4 18 yes ...1. .....
+ 18 H033 no ..... .....
+ 18 12 yes 1.... .....
+ 12 H010 no ..... .....
+ 12 5 yes ..... ....1
+ 5 31 no ..... .....
+ 31 H011 no ..... .....
+ 31 21 no ..... .....
+ 21 H003 yes ....1 .....
+ 21 33 yes ..1.. .....
+ 33 H014 yes 0.... .....
+ 33 15 no ..... .....
+ 15 H017 no ..... .....
+ 15 H027 yes ..... 0...0
+ 5 34 yes ...0. .....
+ 34 H018 no ..... .....
+ 34 13 yes .0... .....
+ 13 H028 yes ..... ..0..
+ 13 11 no ..... .....
+ 11 H001 no ..... .....
+ 11 9 no ..... .....
+ 9 H015 yes ..... ...0.
+ 9 H020 yes ..... ....0
+ 3 H019 no ..... .....
+
+
+
+
+
+ +-----------------------------------------------------------------------------------------------------H030
+ !
+ ! +--------------------------------------------------------------------------------------------------H006
+ ! !
+-27 ! +--H035
+ ! ! +----------------22
+ ! ! ! +--H007
+ ! ! !
+ +-10 +-------------------------------------------------------------------------17 +--------------H023
+ ! ! ! !
+ ! ! ! ! +--------H012
+ ! ! +-----6 !
+ ! ! ! +-29 +--H021
+ ! ! ! ! ! +-26
+ ! ! ! ! +-16 +--H009
+ +--1 +--8 !
+ ! ! +-----H002
+ ! !
+ ! +-----------H026
+ !
+ ! +-----------------------------------------------------------------------H025
+ ! !
+ ! ! +--------------------------------------------------------------------H004
+ +----------------------25 !
+ ! ! +--------H005
+ ! ! +-------------------------------------------------------30
+ +--2 ! ! +-----H008
+ ! ! +-19
+ ! ! ! +--H032
+ ! ! +-24
+ ! ! +--H016
+ +--7
+ ! +-----------------------------------------------------H024
+ ! !
+ ! ! +--------------------------------------------------H031
+ ! ! !
+ ! ! ! +--------------------------------------------H013
+ +----------14 ! !
+ ! ! +-23 +-----------------------------------------H022
+ ! ! ! ! !
+ ! ! ! +-32 +--------------------------------------H029
+ ! ! ! ! !
+ ! ! ! +-20 +-----------------------------------H034
+ +-28 ! ! !
+ ! ! +--4 +--------------------------------H033
+ ! ! ! !
+ ! ! ! ! +-----------------------------H010
+ ! ! +-18 !
+ ! ! ! ! +-----------H011
+ ! ! ! ! +-------------31
+ ! ! +-12 ! ! +--------H003
+ ! ! ! ! +-21
+ ! ! ! ! ! +-----H014
+ +--3 ! ! +-33
+ ! +--5 ! +--H017
+ ! ! +-15
+ ! ! +--H027
+ ! !
+ ! ! +-----------H018
+ ! +-------------34
+ ! ! +--------H028
+ ! +-13
+ ! ! +-----H001
+ ! +-11
+ ! ! +--H015
+ ! +--9
+ ! +--H020
+ !
+ +-----------------------------------------------H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 27 no ..... .....
+ 27 H030 yes ..... ...1.
+ 27 10 no ..... .....
+ 10 H006 yes .0... .....
+ 10 1 no ..... .....
+ 1 17 yes ...1. .....
+ 17 22 no ..... .....
+ 22 H035 yes ..... ....0
+ 22 H007 no ..... .....
+ 17 6 yes ..1.. .....
+ 6 H023 no ..... .....
+ 6 8 no ..... .....
+ 8 29 yes ..... 0....
+ 29 H012 no ..... .....
+ 29 16 maybe ....? .....
+ 16 26 yes ..... ..1..
+ 26 H021 yes 0...1 .....
+ 26 H009 maybe ....0 .....
+ 16 H002 maybe ....1 .....
+ 8 H026 yes 0.... .....
+ 1 25 yes 0.... .....
+ 25 H025 no ..... .....
+ 25 2 yes ....1 .....
+ 2 H004 no ..... .....
+ 2 7 yes ..... 0....
+ 7 30 no ..... .....
+ 30 H005 yes ..... ....0
+ 30 19 no ..... .....
+ 19 H008 no ..... .....
+ 19 24 yes ...1. .....
+ 24 H032 yes ..... .1...
+ 24 H016 no ..... .....
+ 7 14 maybe ..... ...?.
+ 14 H024 maybe ..... ...1.
+ 14 28 yes ..... ..1..
+ 28 H031 maybe ..... ...0.
+ 28 3 yes ..... .1.1.
+ 3 23 yes ..... ....0
+ 23 H013 no ..... .....
+ 23 32 yes ..... 1....
+ 32 H022 no ..... .....
+ 32 20 yes ....0 .....
+ 20 H029 yes ..... ....1
+ 20 4 no ..... .....
+ 4 H034 no ..... .....
+ 4 18 yes ...1. .....
+ 18 H033 no ..... .....
+ 18 12 yes 1.... .....
+ 12 H010 no ..... .....
+ 12 5 yes ..... ....1
+ 5 31 no ..... .....
+ 31 H011 no ..... .....
+ 31 21 no ..... .....
+ 21 H003 yes ....1 .....
+ 21 33 yes ..1.. .....
+ 33 H014 yes 0.... .....
+ 33 15 no ..... .....
+ 15 H017 no ..... .....
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+ 5 34 yes ...0. .....
+ 34 H018 no ..... .....
+ 34 13 yes .0... .....
+ 13 H028 yes ..... ..0..
+ 13 11 no ..... .....
+ 11 H001 no ..... .....
+ 11 9 no ..... .....
+ 9 H015 yes ..... ...0.
+ 9 H020 yes ..... ....0
+ 3 H019 no ..... .....
+
+
+
+
+
+ +-----------------------------------------------------------------------------------------------------H030
+ !
+ ! +--------------------------------------------------------------------------------------------------H006
+ ! !
+-27 ! +--H035
+ ! ! +----------------22
+ ! ! ! +--H007
+ ! ! !
+ +-10 +-------------------------------------------------------------------------17 +--------------H023
+ ! ! ! !
+ ! ! ! ! +--------H012
+ ! ! +-----6 !
+ ! ! ! +-29 +--H021
+ ! ! ! ! ! +-26
+ ! ! ! ! +-16 +--H009
+ +--1 +--8 !
+ ! ! +-----H002
+ ! !
+ ! +-----------H026
+ !
+ ! +-----------------------------------------------------------------------H025
+ ! !
+ ! ! +--------------------------------------------------------------------H004
+ +----------------------25 !
+ ! ! +--------H008
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+ +--2 ! ! +-----H005
+ ! ! +-30
+ ! ! ! +--H032
+ ! ! +-24
+ ! ! +--H016
+ +--7
+ ! +-----------------------------------------------------H024
+ ! !
+ ! ! +--------------------------------------------------H031
+ ! ! !
+ ! ! ! +--------------------------------------------H013
+ +----------14 ! !
+ ! ! +-23 +-----------------------------------------H022
+ ! ! ! ! !
+ ! ! ! +-32 +--------------------------------------H029
+ ! ! ! ! !
+ ! ! ! +-20 +-----------------------------------H034
+ +-28 ! ! !
+ ! ! +--4 +--------------------------------H033
+ ! ! ! !
+ ! ! ! ! +-----------------------------H010
+ ! ! +-18 !
+ ! ! ! ! +-----------H011
+ ! ! ! ! +-------------31
+ ! ! +-12 ! ! +--------H003
+ ! ! ! ! +-21
+ ! ! ! ! ! +-----H014
+ +--3 ! ! +-33
+ ! +--5 ! +--H017
+ ! ! +-15
+ ! ! +--H027
+ ! !
+ ! ! +-----------H018
+ ! +-------------34
+ ! ! +--------H028
+ ! +-13
+ ! ! +-----H001
+ ! +-11
+ ! ! +--H015
+ ! +--9
+ ! +--H020
+ !
+ +-----------------------------------------------H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 27 no ..... .....
+ 27 H030 yes ..... ...1.
+ 27 10 no ..... .....
+ 10 H006 yes .0... .....
+ 10 1 no ..... .....
+ 1 17 yes ...1. .....
+ 17 22 no ..... .....
+ 22 H035 yes ..... ....0
+ 22 H007 no ..... .....
+ 17 6 yes ..1.. .....
+ 6 H023 no ..... .....
+ 6 8 no ..... .....
+ 8 29 yes ..... 0....
+ 29 H012 no ..... .....
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+ 16 26 yes ..... ..1..
+ 26 H021 yes 0...1 .....
+ 26 H009 maybe ....0 .....
+ 16 H002 maybe ....1 .....
+ 8 H026 yes 0.... .....
+ 1 25 yes 0.... .....
+ 25 H025 no ..... .....
+ 25 2 yes ....1 .....
+ 2 H004 no ..... .....
+ 2 7 yes ..... 0....
+ 7 19 no ..... .....
+ 19 H008 no ..... .....
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+ 30 H005 yes ..... ....0
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+ 24 H016 no ..... .....
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+ 23 H013 no ..... .....
+ 23 32 yes ..... 1....
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+ 13 H028 yes ..... ..0..
+ 13 11 no ..... .....
+ 11 H001 no ..... .....
+ 11 9 no ..... .....
+ 9 H015 yes ..... ...0.
+ 9 H020 yes ..... ....0
+ 3 H019 no ..... .....
+
+
+
+
+
+ +-----------------------------------------------------------------------------------------------------H030
+ !
+ ! +--------------------------------------------------------------------------------------------------H006
+ ! !
+-27 ! +--H035
+ ! ! +----------------22
+ ! ! ! +--H007
+ ! ! !
+ +-10 +-------------------------------------------------------------------------17 +--------------H023
+ ! ! ! !
+ ! ! ! ! +--------H012
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+ ! ! ! +-29 +--H021
+ ! ! ! ! ! +-26
+ ! ! ! ! +-16 +--H009
+ +--1 +--8 !
+ ! ! +-----H002
+ ! !
+ ! +-----------H026
+ !
+ ! +-----------------------------------------------------------------------H025
+ ! !
+ +----------------------25 +--------------------------------------------------------------------H004
+ ! !
+ ! ! +--H005
+ +--2 +-------------------------------------------------------------30
+ ! ! +--H008
+ ! !
+ ! ! +--H032
+ +-19 +-------------------------------------------------------24
+ ! ! +--H016
+ ! !
+ ! ! +-----------------------------------------------------H024
+ +-----7 !
+ ! ! +--------------------------------------------------H031
+ ! ! !
+ ! ! ! +--------------------------------------------H013
+ +----14 ! !
+ ! ! +-23 +-----------------------------------------H022
+ ! ! ! ! !
+ ! ! ! +-32 +--------------------------------------H029
+ ! ! ! ! !
+ ! ! ! +-20 +-----------------------------------H034
+ +-28 ! ! !
+ ! ! +--4 +--------------------------------H033
+ ! ! ! !
+ ! ! ! ! +-----------------------------H010
+ ! ! +-18 !
+ ! ! ! ! +-----------H011
+ ! ! ! ! +-------------31
+ ! ! +-12 ! ! +--------H003
+ ! ! ! ! +-21
+ ! ! ! ! ! +-----H014
+ +--3 ! ! +-33
+ ! +--5 ! +--H017
+ ! ! +-15
+ ! ! +--H027
+ ! !
+ ! ! +-----------H018
+ ! +-------------34
+ ! ! +--------H028
+ ! +-13
+ ! ! +-----H001
+ ! +-11
+ ! ! +--H015
+ ! +--9
+ ! +--H020
+ !
+ +-----------------------------------------------H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 27 no ..... .....
+ 27 H030 yes ..... ...1.
+ 27 10 no ..... .....
+ 10 H006 yes .0... .....
+ 10 1 no ..... .....
+ 1 17 yes ...1. .....
+ 17 22 no ..... .....
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+ 22 H007 no ..... .....
+ 17 6 yes ..1.. .....
+ 6 H023 no ..... .....
+ 6 8 no ..... .....
+ 8 29 yes ..... 0....
+ 29 H012 no ..... .....
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+ 16 26 yes ..... ..1..
+ 26 H021 yes 0...1 .....
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+ 16 H002 maybe ....1 .....
+ 8 H026 yes 0.... .....
+ 1 25 yes 0.... .....
+ 25 H025 no ..... .....
+ 25 2 yes ....1 .....
+ 2 H004 no ..... .....
+ 2 19 yes ..... 0....
+ 19 30 no ..... .....
+ 30 H005 yes ..... ....0
+ 30 H008 no ..... .....
+ 19 7 no ..... .....
+ 7 24 yes ...1. .....
+ 24 H032 yes ..... .1...
+ 24 H016 no ..... .....
+ 7 14 maybe ..... ...?.
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+ 14 28 yes ..... ..1..
+ 28 H031 maybe ..... ...0.
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+ 3 23 yes ..... ....0
+ 23 H013 no ..... .....
+ 23 32 yes ..... 1....
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+ 20 H029 yes ..... ....1
+ 20 4 no ..... .....
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+ 18 12 yes 1.... .....
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+ 12 5 yes ..... ....1
+ 5 31 no ..... .....
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+ 33 H014 yes 0.... .....
+ 33 15 no ..... .....
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+ 34 H018 no ..... .....
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+ 13 H028 yes ..... ..0..
+ 13 11 no ..... .....
+ 11 H001 no ..... .....
+ 11 9 no ..... .....
+ 9 H015 yes ..... ...0.
+ 9 H020 yes ..... ....0
+ 3 H019 no ..... .....
+
+
+
+
+
+ +-----------------------------------------------------------------------------------------------------H030
+ !
+ ! +--------------------------------------------------------------------------------------------------H006
+ ! !
+-27 ! +--H035
+ ! ! +----------------22
+ ! ! ! +--H007
+ ! ! !
+ +-10 +-------------------------------------------------------------------------17 +--------------H023
+ ! ! ! !
+ ! ! ! ! +--------H012
+ ! ! +-----6 !
+ ! ! ! +-29 +--H021
+ ! ! ! ! ! +-26
+ ! ! ! ! +-16 +--H009
+ +--1 +--8 !
+ ! ! +-----H002
+ ! !
+ ! +-----------H026
+ !
+ ! +-----------------------------------------------------------------------H025
+ ! !
+ +----------------------25 +--------------------------------------------------------------------H004
+ ! !
+ ! ! +--H032
+ +--2 +-------------------------------------------------------------24
+ ! ! +--H016
+ ! !
+ ! ! +--H005
+ +--7 +-------------------------------------------------------30
+ ! ! +--H008
+ ! !
+ ! ! +-----------------------------------------------------H024
+ +----19 !
+ ! ! +--------------------------------------------------H031
+ ! ! !
+ ! ! ! +--------------------------------------------H013
+ +----14 ! !
+ ! ! +-23 +-----------------------------------------H022
+ ! ! ! ! !
+ ! ! ! +-32 +--------------------------------------H029
+ ! ! ! ! !
+ ! ! ! +-20 +-----------------------------------H034
+ +-28 ! ! !
+ ! ! +--4 +--------------------------------H033
+ ! ! ! !
+ ! ! ! ! +-----------------------------H010
+ ! ! +-18 !
+ ! ! ! ! +-----------H011
+ ! ! ! ! +-------------31
+ ! ! +-12 ! ! +--------H003
+ ! ! ! ! +-21
+ ! ! ! ! ! +-----H014
+ +--3 ! ! +-33
+ ! +--5 ! +--H017
+ ! ! +-15
+ ! ! +--H027
+ ! !
+ ! ! +-----------H018
+ ! +-------------34
+ ! ! +--------H028
+ ! +-13
+ ! ! +-----H001
+ ! +-11
+ ! ! +--H015
+ ! +--9
+ ! +--H020
+ !
+ +-----------------------------------------------H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 27 no ..... .....
+ 27 H030 yes ..... ...1.
+ 27 10 no ..... .....
+ 10 H006 yes .0... .....
+ 10 1 no ..... .....
+ 1 17 yes ...1. .....
+ 17 22 no ..... .....
+ 22 H035 yes ..... ....0
+ 22 H007 no ..... .....
+ 17 6 yes ..1.. .....
+ 6 H023 no ..... .....
+ 6 8 no ..... .....
+ 8 29 yes ..... 0....
+ 29 H012 no ..... .....
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+ 16 26 yes ..... ..1..
+ 26 H021 yes 0...1 .....
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+ 16 H002 maybe ....1 .....
+ 8 H026 yes 0.... .....
+ 1 25 yes 0.... .....
+ 25 H025 no ..... .....
+ 25 2 yes ....1 .....
+ 2 H004 no ..... .....
+ 2 7 yes ..... 0....
+ 7 24 yes ...1. .....
+ 24 H032 yes ..... .1...
+ 24 H016 no ..... .....
+ 7 19 no ..... .....
+ 19 30 no ..... .....
+ 30 H005 yes ..... ....0
+ 30 H008 no ..... .....
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+ 3 23 yes ..... ....0
+ 23 H013 no ..... .....
+ 23 32 yes ..... 1....
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+ 32 20 yes ....0 .....
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+ 20 4 no ..... .....
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+ 18 12 yes 1.... .....
+ 12 H010 no ..... .....
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+ 5 31 no ..... .....
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+ 31 21 no ..... .....
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+ 21 33 yes ..1.. .....
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+ 33 15 no ..... .....
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+ 5 34 yes ...0. .....
+ 34 H018 no ..... .....
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+ 13 H028 yes ..... ..0..
+ 13 11 no ..... .....
+ 11 H001 no ..... .....
+ 11 9 no ..... .....
+ 9 H015 yes ..... ...0.
+ 9 H020 yes ..... ....0
+ 3 H019 no ..... .....
+
+
+
+
+
+ +-----------------------------------------------------------------------------------------------------H006
+ !
+ ! +--------------------H030
+ ! !
+ ! +----------------------------------------------------------------------------27 +-----------------H007
+ ! ! ! !
+-10 ! +-17 +--------------H035
+ ! ! ! !
+ ! ! +-22 +-----------H023
+ ! ! ! !
+ ! ! +--6 +-----H009
+ ! ! ! +-16
+ +--1 ! ! ! +--H012
+ ! +--8 +-29
+ ! ! +--H002
+ ! !
+ ! +--------H026
+ !
+ ! +--------------------------------------------------------------------------H025
+ ! !
+ +----------------------25 +-----------------------------------------------------------------------H004
+ ! !
+ +--2 +--------------------------------------------------------------------H008
+ ! !
+ +-19 +-----------------------------------------------------------------H024
+ ! !
+ ! ! +--------------------------------------------------------------H005
+ +-14 !
+ ! ! +--H021
+ ! ! +-26
+ ! ! +----------------------------------------------------24 +--H032
+ +-30 ! !
+ ! ! +-----H016
+ ! !
+ ! ! +--------------------------------------------------H031
+ ! ! !
+ +--7 ! +--------------------------------------------H013
+ ! ! !
+ ! ! +-23 +-----------------------------------------H022
+ ! ! ! ! !
+ ! ! ! +-32 +--H029
+ ! ! ! ! +----------------------------------20
+ ! ! ! ! ! +--H034
+ +-------28 ! +--4
+ ! ! ! +--------------------------------H033
+ ! ! ! !
+ ! ! +----18 +-----------------------------H010
+ ! ! ! !
+ ! ! ! ! +-----H017
+ ! ! +-12 +-------------------15
+ ! ! ! ! ! +--H014
+ ! ! ! ! +-33
+ ! ! ! ! +--H027
+ +--3 +--5
+ ! ! +--H011
+ ! ! +-------------31
+ ! ! ! +--H003
+ ! +-------21
+ ! ! +-----------H018
+ ! +----34
+ ! ! +--------H028
+ ! +-13
+ ! ! +-----H001
+ ! +-11
+ ! ! +--H015
+ ! +--9
+ ! +--H020
+ !
+ +-----------------------------------------------H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 10 no ..... .....
+ 10 H006 yes .0... .....
+ 10 1 no ..... .....
+ 1 27 no ..... .....
+ 27 H030 yes ..... ...1.
+ 27 17 yes ...1. .....
+ 17 H007 no ..... .....
+ 17 22 no ..... .....
+ 22 H035 yes ..... ....0
+ 22 6 yes ..1.. .....
+ 6 H023 no ..... .....
+ 6 8 no ..... .....
+ 8 16 yes ..... 0....
+ 16 H009 yes ..... ..1..
+ 16 29 no ..... .....
+ 29 H012 no ..... .....
+ 29 H002 yes ....1 .....
+ 8 H026 yes 0.... .....
+ 1 25 yes 0.... .....
+ 25 H025 no ..... .....
+ 25 2 yes ....1 .....
+ 2 H004 no ..... .....
+ 2 19 yes ..... 0....
+ 19 H008 no ..... .....
+ 19 14 no ..... .....
+ 14 H024 yes ..... ...1.
+ 14 30 no ..... .....
+ 30 H005 yes ..... ....0
+ 30 7 no ..... .....
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+ 24 26 no ..... .....
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+ 26 H032 yes ..... .1...
+ 24 H016 no ..... .....
+ 7 28 yes ..... ..1..
+ 28 H031 no ..... .....
+ 28 3 yes ..... .1.1.
+ 3 23 yes ..... ....0
+ 23 H013 no ..... .....
+ 23 32 yes ..... 1....
+ 32 H022 no ..... .....
+ 32 4 yes ....0 .....
+ 4 20 no ..... .....
+ 20 H029 yes ..... ....1
+ 20 H034 no ..... .....
+ 4 18 yes ...1. .....
+ 18 H033 no ..... .....
+ 18 12 yes 1.... .....
+ 12 H010 no ..... .....
+ 12 5 yes ..... ....1
+ 5 15 yes ..1.. .....
+ 15 H017 no ..... .....
+ 15 33 no ..... .....
+ 33 H014 yes 0.... .....
+ 33 H027 yes ..... 0...0
+ 5 21 no ..... .....
+ 21 31 no ..... .....
+ 31 H011 no ..... .....
+ 31 H003 yes ....1 .....
+ 21 34 yes ...0. .....
+ 34 H018 no ..... .....
+ 34 13 yes .0... .....
+ 13 H028 yes ..... ..0..
+ 13 11 no ..... .....
+ 11 H001 no ..... .....
+ 11 9 no ..... .....
+ 9 H015 yes ..... ...0.
+ 9 H020 yes ..... ....0
+ 3 H019 no ..... .....
+
+
+
+
+
+ +-----------------------------------------------------------------------------------------------------H006
+ !
+ ! +--------------------H030
+ ! !
+ ! +----------------------------------------------------------------------------27 +--H035
+ ! ! ! +-------------22
+-10 ! ! ! +--H007
+ ! ! +-17
+ ! ! ! +-----------H023
+ ! ! ! !
+ ! ! +-----6 +-----H009
+ ! ! ! +-16
+ +--1 ! ! ! +--H012
+ ! +--8 +-29
+ ! ! +--H002
+ ! !
+ ! +--------H026
+ !
+ ! +--------------------------------------------------------------------------H025
+ ! !
+ +----------------------25 +-----------------------------------------------------------------------H004
+ ! !
+ +--2 +--------------------------------------------------------------------H008
+ ! !
+ +-19 +-----------------------------------------------------------------H024
+ ! !
+ ! ! +--------------------------------------------------------------H005
+ +-14 !
+ ! ! +--H021
+ ! ! +-26
+ ! ! +----------------------------------------------------24 +--H032
+ +-30 ! !
+ ! ! +-----H016
+ ! !
+ ! ! +--------------------------------------------------H031
+ ! ! !
+ +--7 ! +--------------------------------------------H013
+ ! ! !
+ ! ! +-23 +-----------------------------------------H022
+ ! ! ! ! !
+ ! ! ! +-32 +--------------------------------------H029
+ ! ! ! ! !
+ ! ! ! +-20 +-----------------------------------H034
+ +-------28 ! ! !
+ ! ! +--4 +--------------------------------H033
+ ! ! ! !
+ ! ! +-18 +-----------------------------H010
+ ! ! ! !
+ ! ! +-12 +--------------------------H003
+ ! ! ! !
+ ! ! ! ! +-----H017
+ ! ! +-21 +----------------15
+ ! ! ! ! ! +--H014
+ +--3 ! ! +-33
+ ! +--5 +--H027
+ ! !
+ ! ! +--------------H011
+ ! +-------31
+ ! ! +-----------H018
+ ! +-34
+ ! ! +--------H028
+ ! +-13
+ ! ! +-----H001
+ ! +-11
+ ! ! +--H015
+ ! +--9
+ ! +--H020
+ !
+ +-----------------------------------------------H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 10 no ..... .....
+ 10 H006 yes .0... .....
+ 10 1 no ..... .....
+ 1 27 no ..... .....
+ 27 H030 yes ..... ...1.
+ 27 17 yes ...1. .....
+ 17 22 no ..... .....
+ 22 H035 yes ..... ....0
+ 22 H007 no ..... .....
+ 17 6 yes ..1.. .....
+ 6 H023 no ..... .....
+ 6 8 no ..... .....
+ 8 16 yes ..... 0....
+ 16 H009 yes ..... ..1..
+ 16 29 no ..... .....
+ 29 H012 no ..... .....
+ 29 H002 yes ....1 .....
+ 8 H026 yes 0.... .....
+ 1 25 yes 0.... .....
+ 25 H025 no ..... .....
+ 25 2 yes ....1 .....
+ 2 H004 no ..... .....
+ 2 19 yes ..... 0....
+ 19 H008 no ..... .....
+ 19 14 no ..... .....
+ 14 H024 yes ..... ...1.
+ 14 30 no ..... .....
+ 30 H005 yes ..... ....0
+ 30 7 no ..... .....
+ 7 24 yes ...1. .....
+ 24 26 no ..... .....
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+ 26 H032 yes ..... .1...
+ 24 H016 no ..... .....
+ 7 28 yes ..... ..1..
+ 28 H031 no ..... .....
+ 28 3 yes ..... .1.1.
+ 3 23 yes ..... ....0
+ 23 H013 no ..... .....
+ 23 32 yes ..... 1....
+ 32 H022 no ..... .....
+ 32 20 yes ....0 .....
+ 20 H029 yes ..... ....1
+ 20 4 no ..... .....
+ 4 H034 no ..... .....
+ 4 18 yes ...1. .....
+ 18 H033 no ..... .....
+ 18 12 yes 1.... .....
+ 12 H010 no ..... .....
+ 12 21 yes ..... ....1
+ 21 H003 yes ....1 .....
+ 21 5 no ..... .....
+ 5 15 yes ..1.. .....
+ 15 H017 no ..... .....
+ 15 33 no ..... .....
+ 33 H014 yes 0.... .....
+ 33 H027 yes ..... 0...0
+ 5 31 no ..... .....
+ 31 H011 no ..... .....
+ 31 34 yes ...0. .....
+ 34 H018 no ..... .....
+ 34 13 yes .0... .....
+ 13 H028 yes ..... ..0..
+ 13 11 no ..... .....
+ 11 H001 no ..... .....
+ 11 9 no ..... .....
+ 9 H015 yes ..... ...0.
+ 9 H020 yes ..... ....0
+ 3 H019 no ..... .....
+
+
+
+
+
+ +-----------------------------------------------------------------------------------------------------H006
+ !
+ ! +--------------------H030
+ ! !
+ ! +----------------------------------------------------------------------------27 +-----------------H007
+ ! ! ! !
+-10 ! +-17 +--------------H035
+ ! ! ! !
+ ! ! +-22 +-----------H023
+ ! ! ! !
+ ! ! +--6 +-----H009
+ ! ! ! +-16
+ +--1 ! ! ! +--H012
+ ! +--8 +-29
+ ! ! +--H002
+ ! !
+ ! +--------H026
+ !
+ ! +--------------------------------------------------------------------------H025
+ ! !
+ +----------------------25 +-----------------------------------------------------------------------H004
+ ! !
+ +--2 +--------------------------------------------------------------------H008
+ ! !
+ +-19 +-----------------------------------------------------------------H024
+ ! !
+ ! ! +--------------------------------------------------------------H005
+ +-14 !
+ ! ! +--H021
+ ! ! +-26
+ ! ! +----------------------------------------------------24 +--H032
+ +-30 ! !
+ ! ! +-----H016
+ ! !
+ ! ! +--------------------------------------------------H031
+ ! ! !
+ +--7 ! +--------------------------------------------H013
+ ! ! !
+ ! ! +-23 +-----------------------------------------H022
+ ! ! ! ! !
+ ! ! ! +-32 +--------------------------------------H029
+ ! ! ! ! !
+ ! ! ! +-20 +-----------------------------------H034
+ +-------28 ! ! !
+ ! ! +--4 +--------------------------------H033
+ ! ! ! !
+ ! ! +-18 +-----------------------------H010
+ ! ! ! !
+ ! ! +-12 +--------------------------H003
+ ! ! ! !
+ ! ! ! ! +-----H017
+ ! ! +-21 +----------------15
+ ! ! ! ! ! +--H014
+ +--3 ! ! +-33
+ ! +--5 +--H027
+ ! !
+ ! ! +--------------H011
+ ! +-------31
+ ! ! +-----------H018
+ ! +-34
+ ! ! +--------H028
+ ! +-13
+ ! ! +-----H001
+ ! +-11
+ ! ! +--H015
+ ! +--9
+ ! +--H020
+ !
+ +-----------------------------------------------H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 10 no ..... .....
+ 10 H006 yes .0... .....
+ 10 1 no ..... .....
+ 1 27 no ..... .....
+ 27 H030 yes ..... ...1.
+ 27 17 yes ...1. .....
+ 17 H007 no ..... .....
+ 17 22 no ..... .....
+ 22 H035 yes ..... ....0
+ 22 6 yes ..1.. .....
+ 6 H023 no ..... .....
+ 6 8 no ..... .....
+ 8 16 yes ..... 0....
+ 16 H009 yes ..... ..1..
+ 16 29 no ..... .....
+ 29 H012 no ..... .....
+ 29 H002 yes ....1 .....
+ 8 H026 yes 0.... .....
+ 1 25 yes 0.... .....
+ 25 H025 no ..... .....
+ 25 2 yes ....1 .....
+ 2 H004 no ..... .....
+ 2 19 yes ..... 0....
+ 19 H008 no ..... .....
+ 19 14 no ..... .....
+ 14 H024 yes ..... ...1.
+ 14 30 no ..... .....
+ 30 H005 yes ..... ....0
+ 30 7 no ..... .....
+ 7 24 yes ...1. .....
+ 24 26 no ..... .....
+ 26 H021 yes ..1.. ..1..
+ 26 H032 yes ..... .1...
+ 24 H016 no ..... .....
+ 7 28 yes ..... ..1..
+ 28 H031 no ..... .....
+ 28 3 yes ..... .1.1.
+ 3 23 yes ..... ....0
+ 23 H013 no ..... .....
+ 23 32 yes ..... 1....
+ 32 H022 no ..... .....
+ 32 20 yes ....0 .....
+ 20 H029 yes ..... ....1
+ 20 4 no ..... .....
+ 4 H034 no ..... .....
+ 4 18 yes ...1. .....
+ 18 H033 no ..... .....
+ 18 12 yes 1.... .....
+ 12 H010 no ..... .....
+ 12 21 yes ..... ....1
+ 21 H003 yes ....1 .....
+ 21 5 no ..... .....
+ 5 15 yes ..1.. .....
+ 15 H017 no ..... .....
+ 15 33 no ..... .....
+ 33 H014 yes 0.... .....
+ 33 H027 yes ..... 0...0
+ 5 31 no ..... .....
+ 31 H011 no ..... .....
+ 31 34 yes ...0. .....
+ 34 H018 no ..... .....
+ 34 13 yes .0... .....
+ 13 H028 yes ..... ..0..
+ 13 11 no ..... .....
+ 11 H001 no ..... .....
+ 11 9 no ..... .....
+ 9 H015 yes ..... ...0.
+ 9 H020 yes ..... ....0
+ 3 H019 no ..... .....
+
+
+
+
+
+ +-----------------------------------------------------------------------------------------------------H006
+ !
+ ! +--------------------H030
+ ! !
+ ! +----------------------------------------------------------------------------27 +-----------------H035
+ ! ! ! !
+-10 ! +-22 +--------------H007
+ ! ! ! !
+ ! ! +-17 +-----------H023
+ ! ! ! !
+ ! ! +--6 +-----H009
+ ! ! ! +-16
+ +--1 ! ! ! +--H012
+ ! +--8 +-29
+ ! ! +--H002
+ ! !
+ ! +--------H026
+ !
+ ! +--------------------------------------------------------------------------H025
+ ! !
+ +----------------------25 +-----------------------------------------------------------------------H004
+ ! !
+ +--2 +--------------------------------------------------------------------H008
+ ! !
+ +-19 +-----------------------------------------------------------------H024
+ ! !
+ ! ! +--------------------------------------------------------------H005
+ +-14 !
+ ! ! +-----H032
+ ! ! +----------------------------------------------------24
+ ! ! ! ! +--H021
+ +-30 ! +-26
+ ! ! +--H016
+ ! !
+ ! ! +--------------------------------------------------H031
+ ! ! !
+ +--7 ! +--------------------------------------------H013
+ ! ! !
+ ! ! +-23 +-----------------------------------------H022
+ ! ! ! ! !
+ ! ! ! +-32 +--------------------------------------H029
+ ! ! ! ! !
+ ! ! ! +-20 +-----------------------------------H034
+ +-------28 ! ! !
+ ! ! +--4 +--------------------------------H033
+ ! ! ! !
+ ! ! +-18 +-----------------------------H010
+ ! ! ! !
+ ! ! +-12 +--------------------------H003
+ ! ! ! !
+ ! ! ! ! +-----H017
+ ! ! +-21 +----------------15
+ ! ! ! ! ! +--H014
+ +--3 ! ! +-33
+ ! +--5 +--H027
+ ! !
+ ! ! +--------------H011
+ ! +-------31
+ ! ! +-----------H018
+ ! +-34
+ ! ! +--------H028
+ ! +-13
+ ! ! +-----H001
+ ! +-11
+ ! ! +--H015
+ ! +--9
+ ! +--H020
+ !
+ +-----------------------------------------------H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 10 no ..... .....
+ 10 H006 yes .0... .....
+ 10 1 no ..... .....
+ 1 27 no ..... .....
+ 27 H030 yes ..... ...1.
+ 27 22 yes ...1. .....
+ 22 H035 yes ..... ....0
+ 22 17 no ..... .....
+ 17 H007 no ..... .....
+ 17 6 yes ..1.. .....
+ 6 H023 no ..... .....
+ 6 8 no ..... .....
+ 8 16 yes ..... 0....
+ 16 H009 yes ..... ..1..
+ 16 29 no ..... .....
+ 29 H012 no ..... .....
+ 29 H002 yes ....1 .....
+ 8 H026 yes 0.... .....
+ 1 25 yes 0.... .....
+ 25 H025 no ..... .....
+ 25 2 yes ....1 .....
+ 2 H004 no ..... .....
+ 2 19 yes ..... 0....
+ 19 H008 no ..... .....
+ 19 14 no ..... .....
+ 14 H024 yes ..... ...1.
+ 14 30 no ..... .....
+ 30 H005 yes ..... ....0
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+ 24 26 no ..... .....
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+ 26 H016 no ..... .....
+ 7 28 yes ..... ..1..
+ 28 H031 no ..... .....
+ 28 3 yes ..... .1.1.
+ 3 23 yes ..... ....0
+ 23 H013 no ..... .....
+ 23 32 yes ..... 1....
+ 32 H022 no ..... .....
+ 32 20 yes ....0 .....
+ 20 H029 yes ..... ....1
+ 20 4 no ..... .....
+ 4 H034 no ..... .....
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+ 18 H033 no ..... .....
+ 18 12 yes 1.... .....
+ 12 H010 no ..... .....
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+ 21 H003 yes ....1 .....
+ 21 5 no ..... .....
+ 5 15 yes ..1.. .....
+ 15 H017 no ..... .....
+ 15 33 no ..... .....
+ 33 H014 yes 0.... .....
+ 33 H027 yes ..... 0...0
+ 5 31 no ..... .....
+ 31 H011 no ..... .....
+ 31 34 yes ...0. .....
+ 34 H018 no ..... .....
+ 34 13 yes .0... .....
+ 13 H028 yes ..... ..0..
+ 13 11 no ..... .....
+ 11 H001 no ..... .....
+ 11 9 no ..... .....
+ 9 H015 yes ..... ...0.
+ 9 H020 yes ..... ....0
+ 3 H019 no ..... .....
+
+
+
+
+
+ +-----------------------------------------------------------------------------------------------------H006
+ !
+ ! +-----------------------H030
+ ! !
+ ! +-------------------------------------------------------------------------27 +--------------------H035
+ ! ! ! !
+-10 ! +-22 +-----------------H007
+ ! ! ! !
+ ! ! +-17 +--------------H023
+ ! ! ! !
+ ! ! ! ! +--------H009
+ ! ! +--6 +-16
+ ! ! ! ! ! +-----H012
+ +--1 ! ! +-29
+ ! +--8 ! +--H021
+ ! ! +-26
+ ! ! +--H002
+ ! !
+ ! +-----------H026
+ !
+ ! +-----------------------------------------------------------------------H025
+ ! !
+ +-------------------------25 +--------------------------------------------------------------------H004
+ ! !
+ +--2 +-----------------------------------------------------------------H008
+ ! !
+ +-19 +--------------------------------------------------------------H024
+ ! !
+ ! ! +-----------------------------------------------------------H005
+ +-14 !
+ ! ! +--H032
+ ! ! +----------------------------------------------------24
+ +-30 ! +--H016
+ ! !
+ ! ! +--------------------------------------------------H031
+ ! ! !
+ ! ! ! +--------------------------------------------H013
+ +--7 ! !
+ ! ! +-23 +-----------------------------------------H022
+ ! ! ! ! !
+ ! ! ! +-32 +--------------------------------------H029
+ ! ! ! ! !
+ ! ! ! +-20 +-----------------------------------H034
+ +----28 ! ! !
+ ! ! +--4 +--------------------------------H033
+ ! ! ! !
+ ! ! +-18 +-----------------------------H010
+ ! ! ! !
+ ! ! +-12 +--------------------------H003
+ ! ! ! !
+ ! ! ! ! +-----H017
+ ! ! +-21 +----------------15
+ ! ! ! ! ! +--H014
+ +--3 ! ! +-33
+ ! +--5 +--H027
+ ! !
+ ! ! +--------------H011
+ ! +-------31
+ ! ! +-----------H018
+ ! +-34
+ ! ! +--------H028
+ ! +-13
+ ! ! +-----H001
+ ! +-11
+ ! ! +--H015
+ ! +--9
+ ! +--H020
+ !
+ +-----------------------------------------------H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 10 no ..... .....
+ 10 H006 yes .0... .....
+ 10 1 no ..... .....
+ 1 27 no ..... .....
+ 27 H030 yes ..... ...1.
+ 27 22 yes ...1. .....
+ 22 H035 yes ..... ....0
+ 22 17 no ..... .....
+ 17 H007 no ..... .....
+ 17 6 yes ..1.. .....
+ 6 H023 no ..... .....
+ 6 8 no ..... .....
+ 8 16 yes ..... 0....
+ 16 H009 yes ..... ..1..
+ 16 29 no ..... .....
+ 29 H012 no ..... .....
+ 29 26 yes ....1 .....
+ 26 H021 yes 0.... ..1..
+ 26 H002 no ..... .....
+ 8 H026 yes 0.... .....
+ 1 25 yes 0.... .....
+ 25 H025 no ..... .....
+ 25 2 yes ....1 .....
+ 2 H004 no ..... .....
+ 2 19 yes ..... 0....
+ 19 H008 no ..... .....
+ 19 14 no ..... .....
+ 14 H024 yes ..... ...1.
+ 14 30 no ..... .....
+ 30 H005 yes ..... ....0
+ 30 7 no ..... .....
+ 7 24 yes ...1. .....
+ 24 H032 yes ..... .1...
+ 24 H016 no ..... .....
+ 7 28 yes ..... ..1..
+ 28 H031 no ..... .....
+ 28 3 yes ..... .1.1.
+ 3 23 yes ..... ....0
+ 23 H013 no ..... .....
+ 23 32 yes ..... 1....
+ 32 H022 no ..... .....
+ 32 20 yes ....0 .....
+ 20 H029 yes ..... ....1
+ 20 4 no ..... .....
+ 4 H034 no ..... .....
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+ 18 H033 no ..... .....
+ 18 12 yes 1.... .....
+ 12 H010 no ..... .....
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+ 15 H017 no ..... .....
+ 15 33 no ..... .....
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+ 33 H027 yes ..... 0...0
+ 5 31 no ..... .....
+ 31 H011 no ..... .....
+ 31 34 yes ...0. .....
+ 34 H018 no ..... .....
+ 34 13 yes .0... .....
+ 13 H028 yes ..... ..0..
+ 13 11 no ..... .....
+ 11 H001 no ..... .....
+ 11 9 no ..... .....
+ 9 H015 yes ..... ...0.
+ 9 H020 yes ..... ....0
+ 3 H019 no ..... .....
+
+
+
+
+
+ +--H030
+ +-------------------------------------------------------------------------------------------------27
+ ! +--H006
+ !
+ ! +--------------------H035
+ ! !
+ ! +-------------------------------------------------------------------------22 +-----------------H007
+-10 ! ! !
+ ! ! +-17 +--------------H023
+ ! ! ! !
+ ! ! ! ! +--H021
+ ! ! +--6 +----26
+ ! ! ! ! +--H009
+ ! ! ! +-16
+ +-----1 ! ! ! +--H012
+ ! +--8 +----29
+ ! ! +--H002
+ ! !
+ ! +-----------H026
+ !
+ ! +-----------------------------------------------------------------------H025
+ ! !
+ +----------------------25 +--------------------------------------------------------------------H004
+ ! !
+ +--2 +-----------------------------------------------------------------H008
+ ! !
+ +-19 +--------------------------------------------------------------H024
+ ! !
+ ! ! +-----------------------------------------------------------H005
+ +-14 !
+ ! ! +--H032
+ ! ! +----------------------------------------------------24
+ +-30 ! +--H016
+ ! !
+ ! ! +--------------------------------------------------H031
+ ! ! !
+ ! ! ! +--------------------------------------------H013
+ +--7 ! !
+ ! ! +-23 +-----------------------------------------H022
+ ! ! ! ! !
+ ! ! ! +-32 +--------------------------------------H029
+ ! ! ! ! !
+ ! ! ! +-20 +-----------------------------------H034
+ +----28 ! ! !
+ ! ! +--4 +--------------------------------H033
+ ! ! ! !
+ ! ! +-18 +-----------------------------H010
+ ! ! ! !
+ ! ! +-12 +--------------------------H003
+ ! ! ! !
+ ! ! ! ! +-----H017
+ ! ! +-21 +----------------15
+ ! ! ! ! ! +--H014
+ +--3 ! ! +-33
+ ! +--5 +--H027
+ ! !
+ ! ! +--------------H011
+ ! +-------31
+ ! ! +-----------H018
+ ! +-34
+ ! ! +--------H028
+ ! +-13
+ ! ! +-----H001
+ ! +-11
+ ! ! +--H015
+ ! +--9
+ ! +--H020
+ !
+ +-----------------------------------------------H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 10 no ..... .....
+ 10 27 no ..... .....
+ 27 H030 yes ..... ...1.
+ 27 H006 yes .0... .....
+ 10 1 no ..... .....
+ 1 22 yes ...1. .....
+ 22 H035 yes ..... ....0
+ 22 17 no ..... .....
+ 17 H007 no ..... .....
+ 17 6 yes ..1.. .....
+ 6 H023 no ..... .....
+ 6 8 no ..... .....
+ 8 16 yes ..... 0....
+ 16 26 yes ..... ..1..
+ 26 H021 yes 0...1 .....
+ 26 H009 no ..... .....
+ 16 29 no ..... .....
+ 29 H012 no ..... .....
+ 29 H002 yes ....1 .....
+ 8 H026 yes 0.... .....
+ 1 25 yes 0.... .....
+ 25 H025 no ..... .....
+ 25 2 yes ....1 .....
+ 2 H004 no ..... .....
+ 2 19 yes ..... 0....
+ 19 H008 no ..... .....
+ 19 14 no ..... .....
+ 14 H024 yes ..... ...1.
+ 14 30 no ..... .....
+ 30 H005 yes ..... ....0
+ 30 7 no ..... .....
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+ 24 H032 yes ..... .1...
+ 24 H016 no ..... .....
+ 7 28 yes ..... ..1..
+ 28 H031 no ..... .....
+ 28 3 yes ..... .1.1.
+ 3 23 yes ..... ....0
+ 23 H013 no ..... .....
+ 23 32 yes ..... 1....
+ 32 H022 no ..... .....
+ 32 20 yes ....0 .....
+ 20 H029 yes ..... ....1
+ 20 4 no ..... .....
+ 4 H034 no ..... .....
+ 4 18 yes ...1. .....
+ 18 H033 no ..... .....
+ 18 12 yes 1.... .....
+ 12 H010 no ..... .....
+ 12 21 yes ..... ....1
+ 21 H003 yes ....1 .....
+ 21 5 no ..... .....
+ 5 15 yes ..1.. .....
+ 15 H017 no ..... .....
+ 15 33 no ..... .....
+ 33 H014 yes 0.... .....
+ 33 H027 yes ..... 0...0
+ 5 31 no ..... .....
+ 31 H011 no ..... .....
+ 31 34 yes ...0. .....
+ 34 H018 no ..... .....
+ 34 13 yes .0... .....
+ 13 H028 yes ..... ..0..
+ 13 11 no ..... .....
+ 11 H001 no ..... .....
+ 11 9 no ..... .....
+ 9 H015 yes ..... ...0.
+ 9 H020 yes ..... ....0
+ 3 H019 no ..... .....
+
+
+
+
+
+ +-----------------------------------------------------------------------------------------------------H006
+ !
+ ! +--------------------------------------------------------------------------------------------------H030
+ ! !
+-10 ! +--------------------H035
+ ! ! !
+ ! ! +-------------------------------------------------------------------------22 +-----------------H007
+ ! ! ! ! !
+ +-27 ! +-17 +--------------H023
+ ! ! ! !
+ ! ! ! ! +--H021
+ ! ! +--6 +----26
+ ! ! ! ! +--H009
+ ! ! ! +-16
+ +--1 ! ! ! +--H012
+ ! +--8 +----29
+ ! ! +--H002
+ ! !
+ ! +-----------H026
+ !
+ ! +-----------------------------------------------------------------------H025
+ ! !
+ +----------------------25 +--------------------------------------------------------------------H004
+ ! !
+ +--2 +-----------------------------------------------------------------H008
+ ! !
+ +-19 +--------------------------------------------------------------H024
+ ! !
+ ! ! +-----------------------------------------------------------H005
+ +-14 !
+ ! ! +--H032
+ ! ! +----------------------------------------------------24
+ +-30 ! +--H016
+ ! !
+ ! ! +--------------------------------------------------H031
+ ! ! !
+ ! ! ! +--------------------------------------------H013
+ +--7 ! !
+ ! ! +-23 +-----------------------------------------H022
+ ! ! ! ! !
+ ! ! ! +-32 +--------------------------------------H029
+ ! ! ! ! !
+ ! ! ! +-20 +-----------------------------------H034
+ +----28 ! ! !
+ ! ! +--4 +--------------------------------H033
+ ! ! ! !
+ ! ! +-18 +-----------------------------H010
+ ! ! ! !
+ ! ! +-12 +--------------------------H003
+ ! ! ! !
+ ! ! ! ! +-----H017
+ ! ! +-21 +----------------15
+ ! ! ! ! ! +--H014
+ +--3 ! ! +-33
+ ! +--5 +--H027
+ ! !
+ ! ! +--------------H011
+ ! +-------31
+ ! ! +-----------H018
+ ! +-34
+ ! ! +--------H028
+ ! +-13
+ ! ! +-----H001
+ ! +-11
+ ! ! +--H015
+ ! +--9
+ ! +--H020
+ !
+ +-----------------------------------------------H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 10 no ..... .....
+ 10 H006 yes .0... .....
+ 10 27 no ..... .....
+ 27 H030 yes ..... ...1.
+ 27 1 no ..... .....
+ 1 22 yes ...1. .....
+ 22 H035 yes ..... ....0
+ 22 17 no ..... .....
+ 17 H007 no ..... .....
+ 17 6 yes ..1.. .....
+ 6 H023 no ..... .....
+ 6 8 no ..... .....
+ 8 16 yes ..... 0....
+ 16 26 yes ..... ..1..
+ 26 H021 yes 0...1 .....
+ 26 H009 no ..... .....
+ 16 29 no ..... .....
+ 29 H012 no ..... .....
+ 29 H002 yes ....1 .....
+ 8 H026 yes 0.... .....
+ 1 25 yes 0.... .....
+ 25 H025 no ..... .....
+ 25 2 yes ....1 .....
+ 2 H004 no ..... .....
+ 2 19 yes ..... 0....
+ 19 H008 no ..... .....
+ 19 14 no ..... .....
+ 14 H024 yes ..... ...1.
+ 14 30 no ..... .....
+ 30 H005 yes ..... ....0
+ 30 7 no ..... .....
+ 7 24 yes ...1. .....
+ 24 H032 yes ..... .1...
+ 24 H016 no ..... .....
+ 7 28 yes ..... ..1..
+ 28 H031 no ..... .....
+ 28 3 yes ..... .1.1.
+ 3 23 yes ..... ....0
+ 23 H013 no ..... .....
+ 23 32 yes ..... 1....
+ 32 H022 no ..... .....
+ 32 20 yes ....0 .....
+ 20 H029 yes ..... ....1
+ 20 4 no ..... .....
+ 4 H034 no ..... .....
+ 4 18 yes ...1. .....
+ 18 H033 no ..... .....
+ 18 12 yes 1.... .....
+ 12 H010 no ..... .....
+ 12 21 yes ..... ....1
+ 21 H003 yes ....1 .....
+ 21 5 no ..... .....
+ 5 15 yes ..1.. .....
+ 15 H017 no ..... .....
+ 15 33 no ..... .....
+ 33 H014 yes 0.... .....
+ 33 H027 yes ..... 0...0
+ 5 31 no ..... .....
+ 31 H011 no ..... .....
+ 31 34 yes ...0. .....
+ 34 H018 no ..... .....
+ 34 13 yes .0... .....
+ 13 H028 yes ..... ..0..
+ 13 11 no ..... .....
+ 11 H001 no ..... .....
+ 11 9 no ..... .....
+ 9 H015 yes ..... ...0.
+ 9 H020 yes ..... ....0
+ 3 H019 no ..... .....
+
+
+
+
+
+ +-----------------------------------------------------------------------------------------------------H030
+ !
+ ! +--------------------------------------------------------------------------------------------------H006
+ ! !
+-27 ! +--------------------H035
+ ! ! !
+ ! ! +-------------------------------------------------------------------------22 +-----------------H007
+ ! ! ! ! !
+ +-10 ! +-17 +--------------H023
+ ! ! ! !
+ ! ! ! ! +--H021
+ ! ! +--6 +----26
+ ! ! ! ! +--H009
+ ! ! ! +-16
+ +--1 ! ! ! +--H012
+ ! +--8 +----29
+ ! ! +--H002
+ ! !
+ ! +-----------H026
+ !
+ ! +-----------------------------------------------------------------------H025
+ ! !
+ +----------------------25 +--------------------------------------------------------------------H004
+ ! !
+ +--2 +-----------------------------------------------------------------H008
+ ! !
+ +-19 +--------------------------------------------------------------H024
+ ! !
+ ! ! +-----------------------------------------------------------H005
+ +-14 !
+ ! ! +--H032
+ ! ! +----------------------------------------------------24
+ +-30 ! +--H016
+ ! !
+ ! ! +--------------------------------------------------H031
+ ! ! !
+ ! ! ! +--------------------------------------------H013
+ +--7 ! !
+ ! ! +-23 +-----------------------------------------H022
+ ! ! ! ! !
+ ! ! ! +-32 +--------------------------------------H029
+ ! ! ! ! !
+ ! ! ! +-20 +-----------------------------------H034
+ +----28 ! ! !
+ ! ! +--4 +--------------------------------H033
+ ! ! ! !
+ ! ! +-18 +-----------------------------H010
+ ! ! ! !
+ ! ! +-12 +--------------------------H003
+ ! ! ! !
+ ! ! ! ! +-----H017
+ ! ! +-21 +----------------15
+ ! ! ! ! ! +--H014
+ +--3 ! ! +-33
+ ! +--5 +--H027
+ ! !
+ ! ! +--------------H011
+ ! +-------31
+ ! ! +-----------H018
+ ! +-34
+ ! ! +--------H028
+ ! +-13
+ ! ! +-----H001
+ ! +-11
+ ! ! +--H015
+ ! +--9
+ ! +--H020
+ !
+ +-----------------------------------------------H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 27 no ..... .....
+ 27 H030 yes ..... ...1.
+ 27 10 no ..... .....
+ 10 H006 yes .0... .....
+ 10 1 no ..... .....
+ 1 22 yes ...1. .....
+ 22 H035 yes ..... ....0
+ 22 17 no ..... .....
+ 17 H007 no ..... .....
+ 17 6 yes ..1.. .....
+ 6 H023 no ..... .....
+ 6 8 no ..... .....
+ 8 16 yes ..... 0....
+ 16 26 yes ..... ..1..
+ 26 H021 yes 0...1 .....
+ 26 H009 no ..... .....
+ 16 29 no ..... .....
+ 29 H012 no ..... .....
+ 29 H002 yes ....1 .....
+ 8 H026 yes 0.... .....
+ 1 25 yes 0.... .....
+ 25 H025 no ..... .....
+ 25 2 yes ....1 .....
+ 2 H004 no ..... .....
+ 2 19 yes ..... 0....
+ 19 H008 no ..... .....
+ 19 14 no ..... .....
+ 14 H024 yes ..... ...1.
+ 14 30 no ..... .....
+ 30 H005 yes ..... ....0
+ 30 7 no ..... .....
+ 7 24 yes ...1. .....
+ 24 H032 yes ..... .1...
+ 24 H016 no ..... .....
+ 7 28 yes ..... ..1..
+ 28 H031 no ..... .....
+ 28 3 yes ..... .1.1.
+ 3 23 yes ..... ....0
+ 23 H013 no ..... .....
+ 23 32 yes ..... 1....
+ 32 H022 no ..... .....
+ 32 20 yes ....0 .....
+ 20 H029 yes ..... ....1
+ 20 4 no ..... .....
+ 4 H034 no ..... .....
+ 4 18 yes ...1. .....
+ 18 H033 no ..... .....
+ 18 12 yes 1.... .....
+ 12 H010 no ..... .....
+ 12 21 yes ..... ....1
+ 21 H003 yes ....1 .....
+ 21 5 no ..... .....
+ 5 15 yes ..1.. .....
+ 15 H017 no ..... .....
+ 15 33 no ..... .....
+ 33 H014 yes 0.... .....
+ 33 H027 yes ..... 0...0
+ 5 31 no ..... .....
+ 31 H011 no ..... .....
+ 31 34 yes ...0. .....
+ 34 H018 no ..... .....
+ 34 13 yes .0... .....
+ 13 H028 yes ..... ..0..
+ 13 11 no ..... .....
+ 11 H001 no ..... .....
+ 11 9 no ..... .....
+ 9 H015 yes ..... ...0.
+ 9 H020 yes ..... ....0
+ 3 H019 no ..... .....
+
+
+
+
+
+ +-----------------------------------------------------------------------------------------------------H030
+ !
+ ! +--------------------------------------------------------------------------------------------------H006
+ ! !
+-27 ! +--------------------H035
+ ! ! !
+ ! ! +-------------------------------------------------------------------------22 +-----------------H007
+ ! ! ! ! !
+ +-10 ! +-17 +--------------H023
+ ! ! ! !
+ ! ! ! ! +--------H012
+ ! ! +--6 !
+ ! ! ! +-29 +--H021
+ ! ! ! ! ! +-26
+ +--1 ! ! +-16 +--H009
+ ! +--8 !
+ ! ! +-----H002
+ ! !
+ ! +-----------H026
+ !
+ ! +-----------------------------------------------------------------------H025
+ ! !
+ +----------------------25 +--------------------------------------------------------------------H004
+ ! !
+ ! ! +-----------------------------------------------------------------H008
+ +--2 !
+ ! ! +--H005
+ ! ! +----------------------------------------------------------30
+ +-19 ! +--H024
+ ! !
+ ! ! +--H032
+ ! ! +----------------------------------------------------24
+ +-14 ! +--H016
+ ! !
+ ! ! +--------------------------------------------------H031
+ ! ! !
+ ! ! ! +--------------------------------------------H013
+ +-----7 ! !
+ ! ! +-23 +-----------------------------------------H022
+ ! ! ! ! !
+ ! ! ! +-32 +--------------------------------------H029
+ ! ! ! ! !
+ ! ! ! +-20 +-----------------------------------H034
+ +----28 ! ! !
+ ! ! +--4 +--------------------------------H033
+ ! ! ! !
+ ! ! +-18 +-----------------------------H010
+ ! ! ! !
+ ! ! +-12 +--------------------------H003
+ ! ! ! !
+ ! ! ! ! +-----H017
+ ! ! +-21 +----------------15
+ ! ! ! ! ! +--H014
+ +--3 ! ! +-33
+ ! +--5 +--H027
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+ ! ! +--------------H011
+ ! +-------31
+ ! ! +-----------H018
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+ ! ! +--------H028
+ ! +-13
+ ! ! +-----H001
+ ! +-11
+ ! ! +--H015
+ ! +--9
+ ! +--H020
+ !
+ +-----------------------------------------------H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 27 no ..... .....
+ 27 H030 yes ..... ...1.
+ 27 10 no ..... .....
+ 10 H006 yes .0... .....
+ 10 1 no ..... .....
+ 1 22 yes ...1. .....
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+ 6 H023 no ..... .....
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+
+
+
+
+
+ +-----------------------------------------------------------------------------------------------------H030
+ !
+ ! +--------------------------------------------------------------------------------------------------H006
+ ! !
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+ ! ! !
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+ ! !
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+ !
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+ ! ! +-12 +--------------------------H003
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+ ! +--5 +--H027
+ ! !
+ ! ! +--------------H011
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+ ! ! +-----------H018
+ ! +-34
+ ! ! +--------H028
+ ! +-13
+ ! ! +-----H001
+ ! +-11
+ ! ! +--H015
+ ! +--9
+ ! +--H020
+ !
+ +-----------------------------------------------H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 27 no ..... .....
+ 27 H030 yes ..... ...1.
+ 27 10 no ..... .....
+ 10 H006 yes .0... .....
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+ 25 H025 no ..... .....
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+ 2 19 yes ..... 0....
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+
+
+
+
+
+ +-----------------------------------------------------------------------------------------------------H030
+ !
+ ! +--------------------------------------------------------------------------------------------------H006
+ ! !
+-27 ! +--------------------H035
+ ! ! !
+ ! ! +-------------------------------------------------------------------------22 +-----------------H007
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+ ! ! ! +-29 +--H021
+ ! ! ! ! ! +-26
+ +--1 ! ! +-16 +--H009
+ ! +--8 !
+ ! ! +-----H002
+ ! !
+ ! +-----------H026
+ !
+ ! +-----------------------------------------------------------------------H025
+ ! !
+ +----------------------25 +--------------------------------------------------------------------H004
+ ! !
+ ! ! +--H005
+ +--2 +-------------------------------------------------------------30
+ ! ! +--H008
+ ! !
+ +-19 +-----------------------------------------------------------H024
+ ! !
+ ! ! +--H032
+ ! ! +----------------------------------------------------24
+ +----14 ! +--H016
+ ! !
+ ! ! +--------------------------------------------------H031
+ ! ! !
+ ! ! ! +--------------------------------------------H013
+ +--7 ! !
+ ! ! +-23 +-----------------------------------------H022
+ ! ! ! ! !
+ ! ! ! +-32 +--------------------------------------H029
+ ! ! ! ! !
+ ! ! ! +-20 +-----------------------------------H034
+ +----28 ! ! !
+ ! ! +--4 +--------------------------------H033
+ ! ! ! !
+ ! ! +-18 +-----------------------------H010
+ ! ! ! !
+ ! ! +-12 +--------------------------H011
+ ! ! ! !
+ ! ! +-31 +-----------------------H003
+ ! ! ! !
+ ! ! ! ! +-----H014
+ +--3 +-21 +-------------33
+ ! ! ! ! +--H017
+ ! ! ! +-15
+ ! +--5 +--H027
+ ! !
+ ! ! +-----------H018
+ ! +-------34
+ ! ! +--------H028
+ ! +-13
+ ! ! +-----H001
+ ! +-11
+ ! ! +--H015
+ ! +--9
+ ! +--H020
+ !
+ +-----------------------------------------------H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 27 no ..... .....
+ 27 H030 yes ..... ...1.
+ 27 10 no ..... .....
+ 10 H006 yes .0... .....
+ 10 1 no ..... .....
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+ 6 H023 no ..... .....
+ 6 8 no ..... .....
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+ 29 H012 no ..... .....
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+ 1 25 yes 0.... .....
+ 25 H025 no ..... .....
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+ 2 19 yes ..... 0....
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+ 13 11 no ..... .....
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+ 9 H020 yes ..... ....0
+ 3 H019 no ..... .....
+
+
+
+
+
+ +-----------------------------------------------------------------------------------------------------H030
+ !
+ ! +--------------------------------------------------------------------------------------------------H006
+ ! !
+-27 ! +--------------------H035
+ ! ! !
+ ! ! +-------------------------------------------------------------------------22 +-----------------H007
+ ! ! ! ! !
+ +-10 ! +-17 +--------------H023
+ ! ! ! !
+ ! ! ! ! +--------H012
+ ! ! +--6 !
+ ! ! ! +-29 +--H021
+ ! ! ! ! ! +-26
+ +--1 ! ! +-16 +--H009
+ ! +--8 !
+ ! ! +-----H002
+ ! !
+ ! +-----------H026
+ !
+ ! +-----------------------------------------------------------------------H025
+ ! !
+ +----------------------25 +--------------------------------------------------------------------H004
+ ! !
+ +--2 +-----------------------------------------------------------------H008
+ ! !
+ +-19 +--------------------------------------------------------------H024
+ ! !
+ ! ! +-----------------------------------------------------------H005
+ +-14 !
+ ! ! +--H032
+ ! ! +----------------------------------------------------24
+ +-30 ! +--H016
+ ! !
+ ! ! +--------------------------------------------------H031
+ ! ! !
+ ! ! ! +--------------------------------------------H013
+ +--7 ! !
+ ! ! +-23 +-----------------------------------------H022
+ ! ! ! ! !
+ ! ! ! +-32 +--------------------------------------H029
+ ! ! ! ! !
+ ! ! ! +-20 +-----------------------------------H034
+ +----28 ! ! !
+ ! ! +--4 +--------------------------------H033
+ ! ! ! !
+ ! ! +-18 +-----------------------------H010
+ ! ! ! !
+ ! ! +-12 +--------------------------H003
+ ! ! ! !
+ ! ! ! ! +-----H017
+ ! ! +-21 +----------------15
+ ! ! ! ! ! +--H014
+ +--3 ! ! +-33
+ ! +--5 +--H027
+ ! !
+ ! ! +--------------H011
+ ! +-------31
+ ! ! +-----------H018
+ ! +-34
+ ! ! +--------H028
+ ! +-13
+ ! ! +-----H001
+ ! +-11
+ ! ! +--H015
+ ! +--9
+ ! +--H020
+ !
+ +-----------------------------------------------H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 27 no ..... .....
+ 27 H030 yes ..... ...1.
+ 27 10 no ..... .....
+ 10 H006 yes .0... .....
+ 10 1 no ..... .....
+ 1 22 yes ...1. .....
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+ 17 6 yes ..1.. .....
+ 6 H023 no ..... .....
+ 6 8 no ..... .....
+ 8 29 yes ..... 0....
+ 29 H012 no ..... .....
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+ 1 25 yes 0.... .....
+ 25 H025 no ..... .....
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+ 13 11 no ..... .....
+ 11 H001 no ..... .....
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+ 9 H020 yes ..... ....0
+ 3 H019 no ..... .....
+
+
+
+
+
+ +-----------------------------------------------------------------------------------------------------H030
+ !
+ ! +--------------------------------------------------------------------------------------------------H006
+ ! !
+-27 ! +--------------------H035
+ ! ! !
+ ! ! +-------------------------------------------------------------------------22 +-----------------H007
+ ! ! ! ! !
+ +-10 ! +-17 +--------------H023
+ ! ! ! !
+ ! ! ! ! +--------H012
+ ! ! +--6 !
+ ! ! ! +-29 +--H021
+ ! ! ! ! ! +-26
+ +--1 ! ! +-16 +--H009
+ ! +--8 !
+ ! ! +-----H002
+ ! !
+ ! +-----------H026
+ !
+ ! +-----------------------------------------------------------------------H025
+ ! !
+ +----------------------25 +--------------------------------------------------------------------H004
+ ! !
+ +--2 +-----------------------------------------------------------------H008
+ ! !
+ +-19 +--------------------------------------------------------------H005
+ ! !
+ ! ! +-----------------------------------------------------------H024
+ +-30 !
+ ! ! +--H032
+ ! ! +----------------------------------------------------24
+ +-14 ! +--H016
+ ! !
+ ! ! +--------------------------------------------------H031
+ ! ! !
+ ! ! ! +--------------------------------------------H013
+ +--7 ! !
+ ! ! +-23 +-----------------------------------------H022
+ ! ! ! ! !
+ ! ! ! +-32 +--------------------------------------H029
+ ! ! ! ! !
+ ! ! ! +-20 +-----------------------------------H034
+ +----28 ! ! !
+ ! ! +--4 +--------------------------------H033
+ ! ! ! !
+ ! ! +-18 +-----------------------------H010
+ ! ! ! !
+ ! ! +-12 +--------------------------H003
+ ! ! ! !
+ ! ! ! ! +-----H017
+ ! ! +-21 +----------------15
+ ! ! ! ! ! +--H014
+ +--3 ! ! +-33
+ ! +--5 +--H027
+ ! !
+ ! ! +--------------H011
+ ! +-------31
+ ! ! +-----------H018
+ ! +-34
+ ! ! +--------H028
+ ! +-13
+ ! ! +-----H001
+ ! +-11
+ ! ! +--H015
+ ! +--9
+ ! +--H020
+ !
+ +-----------------------------------------------H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 27 no ..... .....
+ 27 H030 yes ..... ...1.
+ 27 10 no ..... .....
+ 10 H006 yes .0... .....
+ 10 1 no ..... .....
+ 1 22 yes ...1. .....
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+ 6 8 no ..... .....
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+ 1 25 yes 0.... .....
+ 25 H025 no ..... .....
+ 25 2 yes ....1 .....
+ 2 H004 no ..... .....
+ 2 19 yes ..... 0....
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+ 19 30 no ..... .....
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+ 3 23 yes ..... ....0
+ 23 H013 no ..... .....
+ 23 32 yes ..... 1....
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+ 31 H011 no ..... .....
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+ 34 13 yes .0... .....
+ 13 H028 yes ..... ..0..
+ 13 11 no ..... .....
+ 11 H001 no ..... .....
+ 11 9 no ..... .....
+ 9 H015 yes ..... ...0.
+ 9 H020 yes ..... ....0
+ 3 H019 no ..... .....
+
+
+
+
+
+ +-----------------------------------------------------------------------------------------------------H030
+ !
+ ! +--------------------------------------------------------------------------------------------------H006
+ ! !
+-27 ! +--------------------H035
+ ! ! !
+ ! ! +-------------------------------------------------------------------------22 +-----------------H007
+ ! ! ! ! !
+ +-10 ! +-17 +--------------H023
+ ! ! ! !
+ ! ! ! ! +--------H012
+ ! ! +--6 !
+ ! ! ! +-29 +--H021
+ ! ! ! ! ! +-26
+ +--1 ! ! +-16 +--H009
+ ! +--8 !
+ ! ! +-----H002
+ ! !
+ ! +-----------H026
+ !
+ ! +-----------------------------------------------------------------------H025
+ ! !
+ +----------------------25 +--------------------------------------------------------------------H004
+ ! !
+ +--2 +-----------------------------------------------------------------H008
+ ! !
+ +-19 +--------------------------------------------------------------H005
+ ! !
+ ! ! +-----------------------------------------------------------H024
+ +-30 !
+ ! ! +--H032
+ ! ! +----------------------------------------------------24
+ +-14 ! +--H016
+ ! !
+ ! ! +--------------------------------------------------H031
+ ! ! !
+ ! ! ! +--------------------------------------------H013
+ +--7 ! !
+ ! ! +-23 +-----------------------------------------H022
+ ! ! ! ! !
+ ! ! ! +-32 +--------------------------------------H029
+ ! ! ! ! !
+ ! ! ! +-20 +-----------------------------------H034
+ +----28 ! ! !
+ ! ! +--4 +--------------------------------H033
+ ! ! ! !
+ ! ! +-18 +-----------------------------H010
+ ! ! ! !
+ ! ! +-12 +--------------------------H011
+ ! ! ! !
+ ! ! +-31 +-----------------------H003
+ ! ! ! !
+ ! ! ! ! +-----H014
+ +--3 +-21 +-------------33
+ ! ! ! ! +--H017
+ ! ! ! +-15
+ ! +--5 +--H027
+ ! !
+ ! ! +-----------H018
+ ! +-------34
+ ! ! +--------H028
+ ! +-13
+ ! ! +-----H001
+ ! +-11
+ ! ! +--H015
+ ! +--9
+ ! +--H020
+ !
+ +-----------------------------------------------H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 27 no ..... .....
+ 27 H030 yes ..... ...1.
+ 27 10 no ..... .....
+ 10 H006 yes .0... .....
+ 10 1 no ..... .....
+ 1 22 yes ...1. .....
+ 22 H035 yes ..... ....0
+ 22 17 no ..... .....
+ 17 H007 no ..... .....
+ 17 6 yes ..1.. .....
+ 6 H023 no ..... .....
+ 6 8 no ..... .....
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+ 29 H012 no ..... .....
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+ 1 25 yes 0.... .....
+ 25 H025 no ..... .....
+ 25 2 yes ....1 .....
+ 2 H004 no ..... .....
+ 2 19 yes ..... 0....
+ 19 H008 no ..... .....
+ 19 30 no ..... .....
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+ 7 28 yes ..... ..1..
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+ 3 23 yes ..... ....0
+ 23 H013 no ..... .....
+ 23 32 yes ..... 1....
+ 32 H022 no ..... .....
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+ 18 12 yes 1.... .....
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+ 33 H014 yes 0.... .....
+ 33 15 no ..... .....
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+ 5 34 yes ...0. .....
+ 34 H018 no ..... .....
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+ 13 11 no ..... .....
+ 11 H001 no ..... .....
+ 11 9 no ..... .....
+ 9 H015 yes ..... ...0.
+ 9 H020 yes ..... ....0
+ 3 H019 no ..... .....
+
+
+
+
+
+ +-----------------------------------------------------------------------------------------------------H030
+ !
+ ! +--------------------------------------------------------------------------------------------------H006
+ ! !
+-27 ! +--------------------H035
+ ! ! !
+ ! ! +-------------------------------------------------------------------------22 +-----------------H007
+ ! ! ! ! !
+ +-10 ! +-17 +--------------H023
+ ! ! ! !
+ ! ! ! ! +--------H012
+ ! ! +--6 !
+ ! ! ! +-29 +--H021
+ ! ! ! ! ! +-26
+ +--1 ! ! +-16 +--H009
+ ! +--8 !
+ ! ! +-----H002
+ ! !
+ ! +-----------H026
+ !
+ ! +-----------------------------------------------------------------------H025
+ ! !
+ +----------------------25 +--------------------------------------------------------------------H004
+ ! !
+ +--2 +-----------------------------------------------------------------H005
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+ ! ! +--H032
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+ +-14 ! +--H016
+ ! !
+ ! ! +--------------------------------------------------H031
+ ! ! !
+ ! ! ! +--------------------------------------------H013
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+ ! ! +-23 +-----------------------------------------H022
+ ! ! ! ! !
+ ! ! ! +-32 +--------------------------------------H029
+ ! ! ! ! !
+ ! ! ! +-20 +-----------------------------------H034
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+ ! ! +--4 +--------------------------------H033
+ ! ! ! !
+ ! ! +-18 +-----------------------------H010
+ ! ! ! !
+ ! ! ! ! +--H011
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+ ! ! ! ! +--H003
+ ! ! ! !
+ ! ! +-21 +-----H017
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+ ! ! ! ! +--H014
+ ! ! ! +-33
+ ! +-----5 +--H027
+ ! !
+ ! ! +-----------H018
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+ ! ! +--------H028
+ ! +-13
+ ! ! +-----H001
+ ! +-11
+ ! ! +--H015
+ ! +--9
+ ! +--H020
+ !
+ +-----------------------------------------------H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 27 no ..... .....
+ 27 H030 yes ..... ...1.
+ 27 10 no ..... .....
+ 10 H006 yes .0... .....
+ 10 1 no ..... .....
+ 1 22 yes ...1. .....
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+ 6 H023 no ..... .....
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+ 29 H012 no ..... .....
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+ 25 H025 no ..... .....
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+ 3 H019 no ..... .....
+
+
+
+
+
+ +-----------------------------------------------------------------------------------------------------H030
+ !
+ ! +--------------------------------------------------------------------------------------------------H006
+ ! !
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+ ! ! !
+ ! ! +-------------------------------------------------------------------------22 +-----------------H007
+ ! ! ! ! !
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+ ! +--8 !
+ ! ! +-----H002
+ ! !
+ ! +-----------H026
+ !
+ ! +-----------------------------------------------------------------------H025
+ ! !
+ +----------------------25 +--------------------------------------------------------------------H004
+ ! !
+ +--2 +-----------------------------------------------------------------H005
+ ! !
+ +-30 +--------------------------------------------------------------H008
+ ! !
+ ! ! +-----------------------------------------------------------H024
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+ ! ! +--H032
+ ! ! +----------------------------------------------------24
+ +-14 ! +--H016
+ ! !
+ ! ! +--------------------------------------------------H031
+ ! ! !
+ ! ! ! +--------------------------------------------H013
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+ ! ! +-23 +-----------------------------------------H022
+ ! ! ! ! !
+ ! ! ! +-32 +--------------------------------------H029
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+ ! ! ! +-20 +-----------------------------------H034
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+ ! ! +--4 +--------------------------------H033
+ ! ! ! !
+ ! ! +-18 +-----------------------------H010
+ ! ! ! !
+ ! ! +-12 +--------------------------H003
+ ! ! ! !
+ ! ! +-21 +-----------------------H011
+ ! ! ! !
+ ! ! ! ! +-----H017
+ +--3 +-31 +-------------15
+ ! ! ! ! +--H014
+ ! ! ! +-33
+ ! +--5 +--H027
+ ! !
+ ! ! +-----------H018
+ ! +-------34
+ ! ! +--------H028
+ ! +-13
+ ! ! +-----H001
+ ! +-11
+ ! ! +--H015
+ ! +--9
+ ! +--H020
+ !
+ +-----------------------------------------------H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 27 no ..... .....
+ 27 H030 yes ..... ...1.
+ 27 10 no ..... .....
+ 10 H006 yes .0... .....
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+ 6 H023 no ..... .....
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+ 29 H012 no ..... .....
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+ 1 25 yes 0.... .....
+ 25 H025 no ..... .....
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+ 2 30 yes ..... 0....
+ 30 H005 yes ..... ....0
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+
+
+
+
+
+ +-----------------------------------------------------------------------------------------------------H030
+ !
+ ! +--------------------------------------------------------------------------------------------------H006
+ ! !
+-27 ! +--------------------H035
+ ! ! !
+ ! ! +-------------------------------------------------------------------------22 +-----------------H007
+ ! ! ! ! !
+ +-10 ! +-17 +--------------H023
+ ! ! ! !
+ ! ! ! ! +--------H012
+ ! ! +--6 !
+ ! ! ! +-29 +--H021
+ ! ! ! ! ! +-26
+ +--1 ! ! +-16 +--H009
+ ! +--8 !
+ ! ! +-----H002
+ ! !
+ ! +-----------H026
+ !
+ ! +-----------------------------------------------------------------------H025
+ ! !
+ +----------------------25 +--------------------------------------------------------------------H004
+ ! !
+ +--2 +-----------------------------------------------------------------H005
+ ! !
+ +-30 +--------------------------------------------------------------H008
+ ! !
+ ! ! +-----------------------------------------------------------H024
+ +-19 !
+ ! ! +--H032
+ ! ! +----------------------------------------------------24
+ +-14 ! +--H016
+ ! !
+ ! ! +--------------------------------------------------H031
+ ! ! !
+ ! ! ! +--------------------------------------------H013
+ +--7 ! !
+ ! ! +-23 +-----------------------------------------H022
+ ! ! ! ! !
+ ! ! ! +-32 +--------------------------------------H029
+ ! ! ! ! !
+ ! ! ! +-20 +-----------------------------------H034
+ +----28 ! ! !
+ ! ! +--4 +--------------------------------H033
+ ! ! ! !
+ ! ! +-18 +-----------------------------H010
+ ! ! ! !
+ ! ! +-12 +--------------------------H003
+ ! ! ! !
+ ! ! ! ! +-----H017
+ ! ! +-21 +----------------15
+ ! ! ! ! ! +--H014
+ +--3 ! ! +-33
+ ! +--5 +--H027
+ ! !
+ ! ! +--------------H011
+ ! +-------31
+ ! ! +-----------H018
+ ! +-34
+ ! ! +--------H028
+ ! +-13
+ ! ! +-----H001
+ ! +-11
+ ! ! +--H015
+ ! +--9
+ ! +--H020
+ !
+ +-----------------------------------------------H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 27 no ..... .....
+ 27 H030 yes ..... ...1.
+ 27 10 no ..... .....
+ 10 H006 yes .0... .....
+ 10 1 no ..... .....
+ 1 22 yes ...1. .....
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+ 6 H023 no ..... .....
+ 6 8 no ..... .....
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+ 1 25 yes 0.... .....
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+ 2 30 yes ..... 0....
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+ 30 19 no ..... .....
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+ 13 11 no ..... .....
+ 11 H001 no ..... .....
+ 11 9 no ..... .....
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+ 9 H020 yes ..... ....0
+ 3 H019 no ..... .....
+
+
+
+
+
+ +-----------------------------------------------------------------------------------------------------H030
+ !
+ ! +--------------------------------------------------------------------------------------------------H006
+ ! !
+-27 ! +--------------------H035
+ ! ! !
+ ! ! +-------------------------------------------------------------------------22 +-----------------H007
+ ! ! ! ! !
+ +-10 ! +-17 +--------------H023
+ ! ! ! !
+ ! ! ! ! +--------H012
+ ! ! +--6 !
+ ! ! ! +-29 +--H021
+ ! ! ! ! ! +-26
+ +--1 ! ! +-16 +--H009
+ ! +--8 !
+ ! ! +-----H002
+ ! !
+ ! +-----------H026
+ !
+ ! +-----------------------------------------------------------------------H025
+ ! !
+ +----------------------25 +--------------------------------------------------------------------H004
+ ! !
+ +--2 +-----------------------------------------------------------------H005
+ ! !
+ +-30 +--------------------------------------------------------------H008
+ ! !
+ ! ! +-----------------------------------------------------------H024
+ +-19 !
+ ! ! +--H032
+ ! ! +----------------------------------------------------24
+ +-14 ! +--H016
+ ! !
+ ! ! +--------------------------------------------------H031
+ ! ! !
+ ! ! ! +--------------------------------------------H013
+ +--7 ! !
+ ! ! +-23 +-----------------------------------------H022
+ ! ! ! ! !
+ ! ! ! +-32 +--------------------------------------H029
+ ! ! ! ! !
+ ! ! ! +-20 +-----------------------------------H034
+ +----28 ! ! !
+ ! ! +--4 +--------------------------------H033
+ ! ! ! !
+ ! ! +-18 +-----------------------------H010
+ ! ! ! !
+ ! ! +-12 +--------------------------H003
+ ! ! ! !
+ ! ! ! ! +--------H011
+ ! ! +-21 +-------------31
+ ! ! ! ! ! +-----H017
+ +--3 ! ! +-15
+ ! ! ! ! +--H014
+ ! +--5 +-33
+ ! ! +--H027
+ ! !
+ ! ! +-----------H018
+ ! +----------34
+ ! ! +--------H028
+ ! +-13
+ ! ! +-----H001
+ ! +-11
+ ! ! +--H015
+ ! +--9
+ ! +--H020
+ !
+ +-----------------------------------------------H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 27 no ..... .....
+ 27 H030 yes ..... ...1.
+ 27 10 no ..... .....
+ 10 H006 yes .0... .....
+ 10 1 no ..... .....
+ 1 22 yes ...1. .....
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+ 17 6 yes ..1.. .....
+ 6 H023 no ..... .....
+ 6 8 no ..... .....
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+ 29 H012 no ..... .....
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+ 8 H026 yes 0.... .....
+ 1 25 yes 0.... .....
+ 25 H025 no ..... .....
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+ 2 30 yes ..... 0....
+ 30 H005 yes ..... ....0
+ 30 19 no ..... .....
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+ 3 23 yes ..... ....0
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+ 13 11 no ..... .....
+ 11 H001 no ..... .....
+ 11 9 no ..... .....
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+ 9 H020 yes ..... ....0
+ 3 H019 no ..... .....
+
+
+
+
+
+ +-----------------------------------------------------------------------------------------------------H030
+ !
+ ! +--------------------------------------------------------------------------------------------------H006
+ ! !
+-27 ! +--------------------H035
+ ! ! !
+ ! ! +-------------------------------------------------------------------------22 +-----------------H007
+ ! ! ! ! !
+ +-10 ! +-17 +--------------H023
+ ! ! ! !
+ ! ! ! ! +--------H012
+ ! ! +--6 !
+ ! ! ! +-29 +--H021
+ ! ! ! ! ! +-26
+ +--1 ! ! +-16 +--H009
+ ! +--8 !
+ ! ! +-----H002
+ ! !
+ ! +-----------H026
+ !
+ ! +-----------------------------------------------------------------------H025
+ ! !
+ +----------------------25 +--------------------------------------------------------------------H004
+ ! !
+ +--2 +-----------------------------------------------------------------H005
+ ! !
+ +-30 +--------------------------------------------------------------H008
+ ! !
+ ! ! +-----------------------------------------------------------H024
+ +-19 !
+ ! ! +--H032
+ ! ! +----------------------------------------------------24
+ +-14 ! +--H016
+ ! !
+ ! ! +--------------------------------------------------H031
+ ! ! !
+ ! ! ! +--------------------------------------------H013
+ +--7 ! !
+ ! ! +-23 +-----------------------------------------H022
+ ! ! ! ! !
+ ! ! ! +-32 +--------------------------------------H029
+ ! ! ! ! !
+ ! ! ! +-20 +-----------------------------------H034
+ +----28 ! ! !
+ ! ! +--4 +--------------------------------H033
+ ! ! ! !
+ ! ! +-18 +-----------------------------H010
+ ! ! ! !
+ ! ! +-12 +--------------------------H011
+ ! ! ! !
+ ! ! +-31 +-----------------------H003
+ ! ! ! !
+ ! ! ! ! +-----H017
+ +--3 +-21 +-------------15
+ ! ! ! ! +--H014
+ ! ! ! +-33
+ ! +--5 +--H027
+ ! !
+ ! ! +-----------H018
+ ! +-------34
+ ! ! +--------H028
+ ! +-13
+ ! ! +-----H001
+ ! +-11
+ ! ! +--H015
+ ! +--9
+ ! +--H020
+ !
+ +-----------------------------------------------H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 27 no ..... .....
+ 27 H030 yes ..... ...1.
+ 27 10 no ..... .....
+ 10 H006 yes .0... .....
+ 10 1 no ..... .....
+ 1 22 yes ...1. .....
+ 22 H035 yes ..... ....0
+ 22 17 no ..... .....
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+ 6 H023 no ..... .....
+ 6 8 no ..... .....
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+ 29 H012 no ..... .....
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+ 26 H021 yes 0...1 .....
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+ 1 25 yes 0.... .....
+ 25 H025 no ..... .....
+ 25 2 yes ....1 .....
+ 2 H004 no ..... .....
+ 2 30 yes ..... 0....
+ 30 H005 yes ..... ....0
+ 30 19 no ..... .....
+ 19 H008 no ..... .....
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+ 14 7 no ..... .....
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+ 3 23 yes ..... ....0
+ 23 H013 no ..... .....
+ 23 32 yes ..... 1....
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+ 15 33 no ..... .....
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+ 5 34 yes ...0. .....
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+ 13 H028 yes ..... ..0..
+ 13 11 no ..... .....
+ 11 H001 no ..... .....
+ 11 9 no ..... .....
+ 9 H015 yes ..... ...0.
+ 9 H020 yes ..... ....0
+ 3 H019 no ..... .....
+
+
+
+
+
+ +-----------------------------------------------------------------------------------------------------H030
+ !
+ ! +--------------------------------------------------------------------------------------------------H006
+ ! !
+-27 ! +--------------------H035
+ ! ! !
+ ! ! +-------------------------------------------------------------------------22 +-----------------H007
+ ! ! ! ! !
+ +-10 ! +-17 +--------------H023
+ ! ! ! !
+ ! ! ! ! +--------H012
+ ! ! +--6 !
+ ! ! ! +-29 +--H021
+ ! ! ! ! ! +-26
+ +--1 ! ! +-16 +--H009
+ ! +--8 !
+ ! ! +-----H002
+ ! !
+ ! +-----------H026
+ !
+ ! +-----------------------------------------------------------------------H025
+ ! !
+ +----------------------25 +--------------------------------------------------------------------H004
+ ! !
+ +--2 +-----------------------------------------------------------------H005
+ ! !
+ +-30 +--------------------------------------------------------------H008
+ ! !
+ ! ! +-----------------------------------------------------------H024
+ +-19 !
+ ! ! +--H032
+ ! ! +----------------------------------------------------24
+ +-14 ! +--H016
+ ! !
+ ! ! +--------------------------------------------------H031
+ ! ! !
+ ! ! ! +--------------------------------------------H013
+ +--7 ! !
+ ! ! +-23 +-----------------------------------------H022
+ ! ! ! ! !
+ ! ! ! +-32 +--------------------------------------H029
+ ! ! ! ! !
+ ! ! ! +-20 +-----------------------------------H034
+ +----28 ! ! !
+ ! ! +--4 +--------------------------------H033
+ ! ! ! !
+ ! ! +-18 +-----------------------------H010
+ ! ! ! !
+ ! ! +-12 +--------------------------H011
+ ! ! ! !
+ ! ! +-31 +-----------------------H003
+ ! ! ! !
+ ! ! ! ! +--H014
+ +--3 +-21 +-33
+ ! ! +-------------15 +--H017
+ ! ! ! !
+ ! +--5 +-----H027
+ ! !
+ ! ! +-----------H018
+ ! +-------34
+ ! ! +--------H028
+ ! +-13
+ ! ! +-----H001
+ ! +-11
+ ! ! +--H015
+ ! +--9
+ ! +--H020
+ !
+ +-----------------------------------------------H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 27 no ..... .....
+ 27 H030 yes ..... ...1.
+ 27 10 no ..... .....
+ 10 H006 yes .0... .....
+ 10 1 no ..... .....
+ 1 22 yes ...1. .....
+ 22 H035 yes ..... ....0
+ 22 17 no ..... .....
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+ 17 6 yes ..1.. .....
+ 6 H023 no ..... .....
+ 6 8 no ..... .....
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+ 29 H012 no ..... .....
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+ 1 25 yes 0.... .....
+ 25 H025 no ..... .....
+ 25 2 yes ....1 .....
+ 2 H004 no ..... .....
+ 2 30 yes ..... 0....
+ 30 H005 yes ..... ....0
+ 30 19 no ..... .....
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+ 14 7 no ..... .....
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+ 24 H032 yes ..... .1...
+ 24 H016 no ..... .....
+ 7 28 yes ..... ..1..
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+ 3 23 yes ..... ....0
+ 23 H013 no ..... .....
+ 23 32 yes ..... 1....
+ 32 H022 no ..... .....
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+ 15 33 no ..... .....
+ 33 H014 yes 0.... .....
+ 33 H017 no ..... .....
+ 15 H027 yes ..... 0...0
+ 5 34 yes ...0. .....
+ 34 H018 no ..... .....
+ 34 13 yes .0... .....
+ 13 H028 yes ..... ..0..
+ 13 11 no ..... .....
+ 11 H001 no ..... .....
+ 11 9 no ..... .....
+ 9 H015 yes ..... ...0.
+ 9 H020 yes ..... ....0
+ 3 H019 no ..... .....
+
+
+
+
+
+ +-----------------------------------------------------------------------------------------------------H030
+ !
+ ! +--------------------------------------------------------------------------------------------------H006
+ ! !
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+ ! ! !
+ ! ! +-------------------------------------------------------------------------22 +-----------------H007
+ ! ! ! ! !
+ +-10 ! +-17 +--------------H023
+ ! ! ! !
+ ! ! ! ! +--------H012
+ ! ! +--6 !
+ ! ! ! +-29 +--H021
+ ! ! ! ! ! +-26
+ +--1 ! ! +-16 +--H009
+ ! +--8 !
+ ! ! +-----H002
+ ! !
+ ! +-----------H026
+ !
+ ! +-----------------------------------------------------------------------H025
+ ! !
+ +----------------------25 +--------------------------------------------------------------------H004
+ ! !
+ +--2 +-----------------------------------------------------------------H005
+ ! !
+ +-30 +--------------------------------------------------------------H008
+ ! !
+ ! ! +-----------------------------------------------------------H024
+ +-19 !
+ ! ! +--H032
+ ! ! +----------------------------------------------------24
+ +-14 ! +--H016
+ ! !
+ ! ! +--------------------------------------------------H031
+ ! ! !
+ ! ! ! +--------------------------------------------H013
+ +--7 ! !
+ ! ! +-23 +-----------------------------------------H022
+ ! ! ! ! !
+ ! ! ! +-32 +--------------------------------------H029
+ ! ! ! ! !
+ ! ! ! +-20 +-----------------------------------H034
+ +----28 ! ! !
+ ! ! +--4 +--------------------------------H033
+ ! ! ! !
+ ! ! +-18 +-----------------------------H010
+ ! ! ! !
+ ! ! +-12 +--------------------------H011
+ ! ! ! !
+ ! ! +-31 +-----------------------H003
+ ! ! ! !
+ ! ! ! ! +-----H014
+ +--3 +-21 +-------------33
+ ! ! ! ! +--H017
+ ! ! ! +-15
+ ! +--5 +--H027
+ ! !
+ ! ! +-----------H018
+ ! +-------34
+ ! ! +--------H028
+ ! +-13
+ ! ! +-----H001
+ ! +-11
+ ! ! +--H015
+ ! +--9
+ ! +--H020
+ !
+ +-----------------------------------------------H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 27 no ..... .....
+ 27 H030 yes ..... ...1.
+ 27 10 no ..... .....
+ 10 H006 yes .0... .....
+ 10 1 no ..... .....
+ 1 22 yes ...1. .....
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+ 22 17 no ..... .....
+ 17 H007 no ..... .....
+ 17 6 yes ..1.. .....
+ 6 H023 no ..... .....
+ 6 8 no ..... .....
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+ 29 H012 no ..... .....
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+ 16 26 yes ..... ..1..
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+ 16 H002 maybe ....1 .....
+ 8 H026 yes 0.... .....
+ 1 25 yes 0.... .....
+ 25 H025 no ..... .....
+ 25 2 yes ....1 .....
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+ 30 H005 yes ..... ....0
+ 30 19 no ..... .....
+ 19 H008 no ..... .....
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+ 14 H024 yes ..... ...1.
+ 14 7 no ..... .....
+ 7 24 yes ...1. .....
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+ 28 H031 no ..... .....
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+ 3 23 yes ..... ....0
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+ 13 11 no ..... .....
+ 11 H001 no ..... .....
+ 11 9 no ..... .....
+ 9 H015 yes ..... ...0.
+ 9 H020 yes ..... ....0
+ 3 H019 no ..... .....
+
+
+
+
+
+ +-----------------------------------------------------------------------------------------------------H030
+ !
+ ! +--------------------------------------------------------------------------------------------------H006
+ ! !
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+ ! ! !
+ ! ! +-------------------------------------------------------------------------22 +-----------------H007
+ ! ! ! ! !
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+ ! ! ! ! ! +-26
+ +--1 ! ! +-16 +--H009
+ ! +--8 !
+ ! ! +-----H002
+ ! !
+ ! +-----------H026
+ !
+ ! +-----------------------------------------------------------------------H025
+ ! !
+ +----------------------25 +--------------------------------------------------------------------H004
+ ! !
+ +--2 +-----------------------------------------------------------------H008
+ ! !
+ ! ! +--------------------------------------------------------------H024
+ +-19 !
+ ! ! +-----H005
+ ! ! +----------------------------------------------------30
+ ! ! ! ! +--H032
+ +-14 ! +-24
+ ! ! +--H016
+ ! !
+ ! ! +--------------------------------------------------H031
+ ! ! !
+ +--7 ! +--------------------------------------------H013
+ ! ! !
+ ! ! +-23 +-----------------------------------------H022
+ ! ! ! ! !
+ ! ! ! +-32 +--------------------------------------H029
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+ ! ! ! +-20 +-----------------------------------H034
+ +-------28 ! ! !
+ ! ! +--4 +--------------------------------H033
+ ! ! ! !
+ ! ! +-18 +-----------------------------H010
+ ! ! ! !
+ ! ! +-12 +--------------------------H003
+ ! ! ! !
+ ! ! ! ! +-----H017
+ ! ! +-21 +----------------15
+ ! ! ! ! ! +--H014
+ +--3 ! ! +-33
+ ! +--5 +--H027
+ ! !
+ ! ! +--------------H011
+ ! +-------31
+ ! ! +-----------H018
+ ! +-34
+ ! ! +--------H028
+ ! +-13
+ ! ! +-----H001
+ ! +-11
+ ! ! +--H015
+ ! +--9
+ ! +--H020
+ !
+ +-----------------------------------------------H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 27 no ..... .....
+ 27 H030 yes ..... ...1.
+ 27 10 no ..... .....
+ 10 H006 yes .0... .....
+ 10 1 no ..... .....
+ 1 22 yes ...1. .....
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+ 6 H023 no ..... .....
+ 6 8 no ..... .....
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+ 29 H012 no ..... .....
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+ 16 H002 maybe ....1 .....
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+ 1 25 yes 0.... .....
+ 25 H025 no ..... .....
+ 25 2 yes ....1 .....
+ 2 H004 no ..... .....
+ 2 19 yes ..... 0....
+ 19 H008 no ..... .....
+ 19 14 no ..... .....
+ 14 H024 yes ..... ...1.
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+ 30 H005 yes ..... ....0
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+ 7 28 yes ..... ..1..
+ 28 H031 no ..... .....
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+ 3 23 yes ..... ....0
+ 23 H013 no ..... .....
+ 23 32 yes ..... 1....
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+ 13 H028 yes ..... ..0..
+ 13 11 no ..... .....
+ 11 H001 no ..... .....
+ 11 9 no ..... .....
+ 9 H015 yes ..... ...0.
+ 9 H020 yes ..... ....0
+ 3 H019 no ..... .....
+
+
+
+
+
+ +-----------------------------------------------------------------------------------------------------H030
+ !
+ ! +--------------------------------------------------------------------------------------------------H006
+ ! !
+-27 ! +--------------------H035
+ ! ! !
+ ! ! +-------------------------------------------------------------------------22 +-----------------H007
+ ! ! ! ! !
+ +-10 ! +-17 +--------------H023
+ ! ! ! !
+ ! ! ! ! +--------H012
+ ! ! +--6 !
+ ! ! ! +-29 +--H021
+ ! ! ! ! ! +-26
+ +--1 ! ! +-16 +--H009
+ ! +--8 !
+ ! ! +-----H002
+ ! !
+ ! +-----------H026
+ !
+ ! +-----------------------------------------------------------------------H025
+ ! !
+ +----------------------25 +--------------------------------------------------------------------H004
+ ! !
+ +--2 +-----------------------------------------------------------------H008
+ ! !
+ +-19 +--------------------------------------------------------------H024
+ ! !
+ ! ! +--H032
+ +-14 +-------------------------------------------------------24
+ ! ! +--H016
+ ! !
+ ! ! +-----------------------------------------------------H005
+ +--7 !
+ ! ! +--------------------------------------------------H031
+ ! ! !
+ ! ! ! +--------------------------------------------H013
+ +----30 ! !
+ ! ! +-23 +-----------------------------------------H022
+ ! ! ! ! !
+ ! ! ! +-32 +--------------------------------------H029
+ ! ! ! ! !
+ ! ! ! +-20 +-----------------------------------H034
+ +-28 ! ! !
+ ! ! +--4 +--------------------------------H033
+ ! ! ! !
+ ! ! +-18 +-----------------------------H010
+ ! ! ! !
+ ! ! +-12 +--------------------------H003
+ ! ! ! !
+ ! ! ! ! +-----H017
+ ! ! +-21 +----------------15
+ ! ! ! ! ! +--H014
+ +--3 ! ! +-33
+ ! +--5 +--H027
+ ! !
+ ! ! +--------------H011
+ ! +-------31
+ ! ! +-----------H018
+ ! +-34
+ ! ! +--------H028
+ ! +-13
+ ! ! +-----H001
+ ! +-11
+ ! ! +--H015
+ ! +--9
+ ! +--H020
+ !
+ +-----------------------------------------------H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 27 no ..... .....
+ 27 H030 yes ..... ...1.
+ 27 10 no ..... .....
+ 10 H006 yes .0... .....
+ 10 1 no ..... .....
+ 1 22 yes ...1. .....
+ 22 H035 yes ..... ....0
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+ 17 H007 no ..... .....
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+ 6 H023 no ..... .....
+ 6 8 no ..... .....
+ 8 29 yes ..... 0....
+ 29 H012 no ..... .....
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+ 1 25 yes 0.... .....
+ 25 H025 no ..... .....
+ 25 2 yes ....1 .....
+ 2 H004 no ..... .....
+ 2 19 yes ..... 0....
+ 19 H008 no ..... .....
+ 19 14 no ..... .....
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+ 24 H016 no ..... .....
+ 7 30 no ..... .....
+ 30 H005 yes ..... ....0
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+ 3 23 yes ..... ....0
+ 23 H013 no ..... .....
+ 23 32 yes ..... 1....
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+ 20 4 no ..... .....
+ 4 H034 no ..... .....
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+ 15 33 no ..... .....
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+ 5 31 no ..... .....
+ 31 H011 no ..... .....
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+ 34 H018 no ..... .....
+ 34 13 yes .0... .....
+ 13 H028 yes ..... ..0..
+ 13 11 no ..... .....
+ 11 H001 no ..... .....
+ 11 9 no ..... .....
+ 9 H015 yes ..... ...0.
+ 9 H020 yes ..... ....0
+ 3 H019 no ..... .....
+
+
+
+
+
+ +-----------------------------------------------------------------------------------------------------H030
+ !
+ ! +--------------------------------------------------------------------------------------------------H006
+ ! !
+-27 ! +--------------------H035
+ ! ! !
+ ! ! +-------------------------------------------------------------------------22 +-----------------H007
+ ! ! ! ! !
+ +-10 ! +-17 +--------------H023
+ ! ! ! !
+ ! ! ! ! +-----H012
+ ! ! +--6 +-29
+ ! ! ! ! ! +--H021
+ ! ! ! +-16 +-26
+ +--1 ! ! ! +--H009
+ ! +--8 !
+ ! ! +--------H002
+ ! !
+ ! +-----------H026
+ !
+ ! +-----------------------------------------------------------------------H025
+ ! !
+ +----------------------25 +--------------------------------------------------------------------H004
+ ! !
+ +--2 +-----------------------------------------------------------------H008
+ ! !
+ +-19 +--------------------------------------------------------------H024
+ ! !
+ ! ! +-----------------------------------------------------------H005
+ +-14 !
+ ! ! +--H032
+ ! ! +----------------------------------------------------24
+ +-30 ! +--H016
+ ! !
+ ! ! +--------------------------------------------------H031
+ ! ! !
+ ! ! ! +--------------------------------------------H013
+ +--7 ! !
+ ! ! +-23 +-----------------------------------------H022
+ ! ! ! ! !
+ ! ! ! +-32 +--------------------------------------H029
+ ! ! ! ! !
+ ! ! ! +-20 +-----------------------------------H034
+ +----28 ! ! !
+ ! ! +--4 +--------------------------------H033
+ ! ! ! !
+ ! ! +-18 +-----------------------------H010
+ ! ! ! !
+ ! ! +-12 +--------------------------H003
+ ! ! ! !
+ ! ! ! ! +-----H017
+ ! ! +-21 +----------------15
+ ! ! ! ! ! +--H014
+ +--3 ! ! +-33
+ ! +--5 +--H027
+ ! !
+ ! ! +--------------H011
+ ! +-------31
+ ! ! +-----------H018
+ ! +-34
+ ! ! +--------H028
+ ! +-13
+ ! ! +-----H001
+ ! +-11
+ ! ! +--H015
+ ! +--9
+ ! +--H020
+ !
+ +-----------------------------------------------H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 27 no ..... .....
+ 27 H030 yes ..... ...1.
+ 27 10 no ..... .....
+ 10 H006 yes .0... .....
+ 10 1 no ..... .....
+ 1 22 yes ...1. .....
+ 22 H035 yes ..... ....0
+ 22 17 no ..... .....
+ 17 H007 no ..... .....
+ 17 6 yes ..1.. .....
+ 6 H023 no ..... .....
+ 6 8 no ..... .....
+ 8 16 yes ..... 0....
+ 16 29 no ..... .....
+ 29 H012 no ..... .....
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+ 26 H021 yes 0...1 .....
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+ 16 H002 yes ....1 .....
+ 8 H026 yes 0.... .....
+ 1 25 yes 0.... .....
+ 25 H025 no ..... .....
+ 25 2 yes ....1 .....
+ 2 H004 no ..... .....
+ 2 19 yes ..... 0....
+ 19 H008 no ..... .....
+ 19 14 no ..... .....
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+ 30 H005 yes ..... ....0
+ 30 7 no ..... .....
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+ 7 28 yes ..... ..1..
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+ 3 23 yes ..... ....0
+ 23 H013 no ..... .....
+ 23 32 yes ..... 1....
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+ 32 20 yes ....0 .....
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+ 20 4 no ..... .....
+ 4 H034 no ..... .....
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+ 18 12 yes 1.... .....
+ 12 H010 no ..... .....
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+ 5 15 yes ..1.. .....
+ 15 H017 no ..... .....
+ 15 33 no ..... .....
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+ 5 31 no ..... .....
+ 31 H011 no ..... .....
+ 31 34 yes ...0. .....
+ 34 H018 no ..... .....
+ 34 13 yes .0... .....
+ 13 H028 yes ..... ..0..
+ 13 11 no ..... .....
+ 11 H001 no ..... .....
+ 11 9 no ..... .....
+ 9 H015 yes ..... ...0.
+ 9 H020 yes ..... ....0
+ 3 H019 no ..... .....
+
+
+
+
+
+ +-----------------------------------------------------------------------------------------------------H006
+ !
+ ! +-----------------------H030
+ ! !
+ ! +-------------------------------------------------------------------------27 +--------------------H035
+ ! ! ! !
+-10 ! +-22 +-----------------H007
+ ! ! ! !
+ ! ! +-17 +--------------H023
+ ! ! ! !
+ ! ! ! ! +--H021
+ ! ! +--6 +----26
+ ! ! ! ! +--H009
+ +--1 ! +-16
+ ! ! ! ! +--H012
+ ! +--8 +----29
+ ! ! +--H002
+ ! !
+ ! +-----------H026
+ !
+ ! +-----------------------------------------------------------------------H025
+ ! !
+ +-------------------------25 +--------------------------------------------------------------------H004
+ ! !
+ +--2 +-----------------------------------------------------------------H008
+ ! !
+ +-19 +--------------------------------------------------------------H024
+ ! !
+ ! ! +-----------------------------------------------------------H005
+ +-14 !
+ ! ! +--H032
+ ! ! +----------------------------------------------------24
+ +-30 ! +--H016
+ ! !
+ ! ! +--------------------------------------------------H031
+ ! ! !
+ ! ! ! +--------------------------------------------H013
+ +--7 ! !
+ ! ! +-23 +-----------------------------------------H022
+ ! ! ! ! !
+ ! ! ! +-32 +--------------------------------------H029
+ ! ! ! ! !
+ ! ! ! +-20 +-----------------------------------H034
+ +----28 ! ! !
+ ! ! +--4 +--------------------------------H033
+ ! ! ! !
+ ! ! +-18 +-----------------------------H010
+ ! ! ! !
+ ! ! +-12 +--------------------------H003
+ ! ! ! !
+ ! ! ! ! +-----H017
+ ! ! +-21 +----------------15
+ ! ! ! ! ! +--H014
+ +--3 ! ! +-33
+ ! +--5 +--H027
+ ! !
+ ! ! +--------------H011
+ ! +-------31
+ ! ! +-----------H018
+ ! +-34
+ ! ! +--------H028
+ ! +-13
+ ! ! +-----H001
+ ! +-11
+ ! ! +--H015
+ ! +--9
+ ! +--H020
+ !
+ +-----------------------------------------------H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 10 no ..... .....
+ 10 H006 yes .0... .....
+ 10 1 no ..... .....
+ 1 27 no ..... .....
+ 27 H030 yes ..... ...1.
+ 27 22 yes ...1. .....
+ 22 H035 yes ..... ....0
+ 22 17 no ..... .....
+ 17 H007 no ..... .....
+ 17 6 yes ..1.. .....
+ 6 H023 no ..... .....
+ 6 8 no ..... .....
+ 8 16 yes ..... 0....
+ 16 26 yes ..... ..1..
+ 26 H021 yes 0...1 .....
+ 26 H009 no ..... .....
+ 16 29 no ..... .....
+ 29 H012 no ..... .....
+ 29 H002 yes ....1 .....
+ 8 H026 yes 0.... .....
+ 1 25 yes 0.... .....
+ 25 H025 no ..... .....
+ 25 2 yes ....1 .....
+ 2 H004 no ..... .....
+ 2 19 yes ..... 0....
+ 19 H008 no ..... .....
+ 19 14 no ..... .....
+ 14 H024 yes ..... ...1.
+ 14 30 no ..... .....
+ 30 H005 yes ..... ....0
+ 30 7 no ..... .....
+ 7 24 yes ...1. .....
+ 24 H032 yes ..... .1...
+ 24 H016 no ..... .....
+ 7 28 yes ..... ..1..
+ 28 H031 no ..... .....
+ 28 3 yes ..... .1.1.
+ 3 23 yes ..... ....0
+ 23 H013 no ..... .....
+ 23 32 yes ..... 1....
+ 32 H022 no ..... .....
+ 32 20 yes ....0 .....
+ 20 H029 yes ..... ....1
+ 20 4 no ..... .....
+ 4 H034 no ..... .....
+ 4 18 yes ...1. .....
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+ 18 12 yes 1.... .....
+ 12 H010 no ..... .....
+ 12 21 yes ..... ....1
+ 21 H003 yes ....1 .....
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+ 5 15 yes ..1.. .....
+ 15 H017 no ..... .....
+ 15 33 no ..... .....
+ 33 H014 yes 0.... .....
+ 33 H027 yes ..... 0...0
+ 5 31 no ..... .....
+ 31 H011 no ..... .....
+ 31 34 yes ...0. .....
+ 34 H018 no ..... .....
+ 34 13 yes .0... .....
+ 13 H028 yes ..... ..0..
+ 13 11 no ..... .....
+ 11 H001 no ..... .....
+ 11 9 no ..... .....
+ 9 H015 yes ..... ...0.
+ 9 H020 yes ..... ....0
+ 3 H019 no ..... .....
+
+
+
+
+
+ +-----------------------------------------------------------------------------------------------------H006
+ !
+ ! +--------------------H035
+ ! !
+ ! +----------------------------------------------------------------------------22 +-----------------H007
+ ! ! ! !
+-10 ! +-17 +--------------H023
+ ! ! ! !
+ ! ! ! ! +--H021
+ ! ! +--6 +----26
+ ! ! ! ! +--H009
+ ! ! ! +-16
+ +--1 ! ! ! +--H012
+ ! +--8 +----29
+ ! ! +--H002
+ ! !
+ ! +-----------H026
+ !
+ ! +--------------------------------------------------------------------------H030
+ ! !
+ +----------------------27 +-----------------------------------------------------------------------H025
+ ! !
+ +-25 +--------------------------------------------------------------------H004
+ ! !
+ +--2 +-----------------------------------------------------------------H008
+ ! !
+ +-19 +--------------------------------------------------------------H024
+ ! !
+ ! ! +-----------------------------------------------------------H005
+ +-14 !
+ ! ! +--H032
+ ! ! +----------------------------------------------------24
+ +-30 ! +--H016
+ ! !
+ ! ! +--------------------------------------------------H031
+ ! ! !
+ ! ! ! +--------------------------------------------H013
+ +--7 ! !
+ ! ! +-23 +-----------------------------------------H022
+ ! ! ! ! !
+ ! ! ! +-32 +--------------------------------------H029
+ ! ! ! ! !
+ ! ! ! +-20 +-----------------------------------H034
+ +----28 ! ! !
+ ! ! +--4 +--------------------------------H033
+ ! ! ! !
+ ! ! +-18 +-----------------------------H010
+ ! ! ! !
+ ! ! +-12 +--------------------------H003
+ ! ! ! !
+ ! ! ! ! +-----H017
+ ! ! +-21 +----------------15
+ ! ! ! ! ! +--H014
+ +--3 ! ! +-33
+ ! +--5 +--H027
+ ! !
+ ! ! +--------------H011
+ ! +-------31
+ ! ! +-----------H018
+ ! +-34
+ ! ! +--------H028
+ ! +-13
+ ! ! +-----H001
+ ! +-11
+ ! ! +--H015
+ ! +--9
+ ! +--H020
+ !
+ +-----------------------------------------------H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 10 no ..... .....
+ 10 H006 yes .0... .....
+ 10 1 no ..... .....
+ 1 22 yes ...1. .....
+ 22 H035 yes ..... ....0
+ 22 17 no ..... .....
+ 17 H007 no ..... .....
+ 17 6 yes ..1.. .....
+ 6 H023 no ..... .....
+ 6 8 no ..... .....
+ 8 16 yes ..... 0....
+ 16 26 yes ..... ..1..
+ 26 H021 yes 0...1 .....
+ 26 H009 no ..... .....
+ 16 29 no ..... .....
+ 29 H012 no ..... .....
+ 29 H002 yes ....1 .....
+ 8 H026 yes 0.... .....
+ 1 27 no ..... .....
+ 27 H030 yes ..... ...1.
+ 27 25 yes 0.... .....
+ 25 H025 no ..... .....
+ 25 2 yes ....1 .....
+ 2 H004 no ..... .....
+ 2 19 yes ..... 0....
+ 19 H008 no ..... .....
+ 19 14 no ..... .....
+ 14 H024 yes ..... ...1.
+ 14 30 no ..... .....
+ 30 H005 yes ..... ....0
+ 30 7 no ..... .....
+ 7 24 yes ...1. .....
+ 24 H032 yes ..... .1...
+ 24 H016 no ..... .....
+ 7 28 yes ..... ..1..
+ 28 H031 no ..... .....
+ 28 3 yes ..... .1.1.
+ 3 23 yes ..... ....0
+ 23 H013 no ..... .....
+ 23 32 yes ..... 1....
+ 32 H022 no ..... .....
+ 32 20 yes ....0 .....
+ 20 H029 yes ..... ....1
+ 20 4 no ..... .....
+ 4 H034 no ..... .....
+ 4 18 yes ...1. .....
+ 18 H033 no ..... .....
+ 18 12 yes 1.... .....
+ 12 H010 no ..... .....
+ 12 21 yes ..... ....1
+ 21 H003 yes ....1 .....
+ 21 5 no ..... .....
+ 5 15 yes ..1.. .....
+ 15 H017 no ..... .....
+ 15 33 no ..... .....
+ 33 H014 yes 0.... .....
+ 33 H027 yes ..... 0...0
+ 5 31 no ..... .....
+ 31 H011 no ..... .....
+ 31 34 yes ...0. .....
+ 34 H018 no ..... .....
+ 34 13 yes .0... .....
+ 13 H028 yes ..... ..0..
+ 13 11 no ..... .....
+ 11 H001 no ..... .....
+ 11 9 no ..... .....
+ 9 H015 yes ..... ...0.
+ 9 H020 yes ..... ....0
+ 3 H019 no ..... .....
+
+
+
+
+
+ +-----------------------------------------------------------------------------------------------------H006
+ !
+ ! +--------------------H030
+ ! !
+ ! +----------------------------------------------------------------------------27 +-----------------H035
+ ! ! ! !
+-10 ! +-22 +--------------H007
+ ! ! ! !
+ ! ! +-17 +-----------H023
+ ! ! ! !
+ ! ! +--6 +-----H009
+ ! ! ! +-16
+ +--1 ! ! ! +--H012
+ ! +--8 +-29
+ ! ! +--H002
+ ! !
+ ! +--------H026
+ !
+ ! +--------------------------------------------------------------------------H025
+ ! !
+ +----------------------25 +-----------------------------------------------------------------------H004
+ ! !
+ +--2 +--------------------------------------------------------------------H008
+ ! !
+ +-19 +-----------------------------------------------------------------H024
+ ! !
+ ! ! +--------------------------------------------------------------H005
+ +-14 !
+ ! ! +--H021
+ ! ! +-26
+ ! ! +----------------------------------------------------24 +--H032
+ +-30 ! !
+ ! ! +-----H016
+ ! !
+ ! ! +--------------------------------------------------H031
+ ! ! !
+ +--7 ! +--------------------------------------------H013
+ ! ! !
+ ! ! +-23 +-----------------------------------------H022
+ ! ! ! ! !
+ ! ! ! +-32 +--------------------------------------H029
+ ! ! ! ! !
+ ! ! ! +-20 +-----------------------------------H034
+ +-------28 ! ! !
+ ! ! +--4 +--------------------------------H033
+ ! ! ! !
+ ! ! +-18 +-----------------------------H010
+ ! ! ! !
+ ! ! +-12 +--------------------------H003
+ ! ! ! !
+ ! ! ! ! +-----H017
+ ! ! +-21 +----------------15
+ ! ! ! ! ! +--H014
+ +--3 ! ! +-33
+ ! +--5 +--H027
+ ! !
+ ! ! +--------------H011
+ ! +-------31
+ ! ! +-----------H018
+ ! +-34
+ ! ! +--------H028
+ ! +-13
+ ! ! +-----H001
+ ! +-11
+ ! ! +--H015
+ ! +--9
+ ! +--H020
+ !
+ +-----------------------------------------------H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 10 no ..... .....
+ 10 H006 yes .0... .....
+ 10 1 no ..... .....
+ 1 27 no ..... .....
+ 27 H030 yes ..... ...1.
+ 27 22 yes ...1. .....
+ 22 H035 yes ..... ....0
+ 22 17 no ..... .....
+ 17 H007 no ..... .....
+ 17 6 yes ..1.. .....
+ 6 H023 no ..... .....
+ 6 8 no ..... .....
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+ 16 H009 yes ..... ..1..
+ 16 29 no ..... .....
+ 29 H012 no ..... .....
+ 29 H002 yes ....1 .....
+ 8 H026 yes 0.... .....
+ 1 25 yes 0.... .....
+ 25 H025 no ..... .....
+ 25 2 yes ....1 .....
+ 2 H004 no ..... .....
+ 2 19 yes ..... 0....
+ 19 H008 no ..... .....
+ 19 14 no ..... .....
+ 14 H024 yes ..... ...1.
+ 14 30 no ..... .....
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+ 7 28 yes ..... ..1..
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+ 3 23 yes ..... ....0
+ 23 H013 no ..... .....
+ 23 32 yes ..... 1....
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+ 20 4 no ..... .....
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+ 12 H010 no ..... .....
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+ 15 H017 no ..... .....
+ 15 33 no ..... .....
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+ 5 31 no ..... .....
+ 31 H011 no ..... .....
+ 31 34 yes ...0. .....
+ 34 H018 no ..... .....
+ 34 13 yes .0... .....
+ 13 H028 yes ..... ..0..
+ 13 11 no ..... .....
+ 11 H001 no ..... .....
+ 11 9 no ..... .....
+ 9 H015 yes ..... ...0.
+ 9 H020 yes ..... ....0
+ 3 H019 no ..... .....
+
+
+
+
+
+ +-----------------------------------------------------------------------------------------------------H006
+ !
+ ! +--------------------H030
+ ! !
+ ! +----------------------------------------------------------------------------27 +-----------------H035
+ ! ! ! !
+-10 ! +-22 +--------------H007
+ ! ! ! !
+ ! ! +-17 +-----------H023
+ ! ! ! !
+ ! ! +--6 +-----H009
+ ! ! ! +-16
+ +--1 ! ! ! +--H012
+ ! +--8 +-29
+ ! ! +--H002
+ ! !
+ ! +--------H026
+ !
+ ! +--------------------------------------------------------------------------H025
+ ! !
+ +----------------------25 +-----------------------------------------------------------------------H004
+ ! !
+ +--2 +--------------------------------------------------------------------H008
+ ! !
+ +-19 +-----------------------------------------------------------------H024
+ ! !
+ ! ! +--------------------------------------------------------------H005
+ +-14 !
+ ! ! +--H032
+ ! ! +-------------------------------------------------------24
+ ! ! ! +--H016
+ +-30 !
+ ! ! +--H031
+ ! ! +-------------------------------------------------28
+ ! ! ! +--H021
+ ! ! !
+ +--7 ! +--------------------------------------------H013
+ ! ! !
+ ! ! +-23 +-----------------------------------------H022
+ ! ! ! ! !
+ ! ! ! +-32 +--------------------------------------H029
+ ! ! ! ! !
+ ! ! ! +-20 +-----------------------------------H034
+ +----26 ! ! !
+ ! ! +--4 +--------------------------------H033
+ ! ! ! !
+ ! ! +-18 +-----------------------------H010
+ ! ! ! !
+ ! ! +-12 +--------------------------H003
+ ! ! ! !
+ ! ! ! ! +-----H017
+ ! ! +-21 +----------------15
+ ! ! ! ! ! +--H014
+ +-----3 ! ! +-33
+ ! +--5 +--H027
+ ! !
+ ! ! +--------------H011
+ ! +-------31
+ ! ! +-----------H018
+ ! +-34
+ ! ! +--------H028
+ ! +-13
+ ! ! +-----H001
+ ! +-11
+ ! ! +--H015
+ ! +--9
+ ! +--H020
+ !
+ +-----------------------------------------------H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 10 no ..... .....
+ 10 H006 yes .0... .....
+ 10 1 no ..... .....
+ 1 27 no ..... .....
+ 27 H030 yes ..... ...1.
+ 27 22 yes ...1. .....
+ 22 H035 yes ..... ....0
+ 22 17 no ..... .....
+ 17 H007 no ..... .....
+ 17 6 yes ..1.. .....
+ 6 H023 no ..... .....
+ 6 8 no ..... .....
+ 8 16 yes ..... 0....
+ 16 H009 yes ..... ..1..
+ 16 29 no ..... .....
+ 29 H012 no ..... .....
+ 29 H002 yes ....1 .....
+ 8 H026 yes 0.... .....
+ 1 25 yes 0.... .....
+ 25 H025 no ..... .....
+ 25 2 yes ....1 .....
+ 2 H004 no ..... .....
+ 2 19 yes ..... 0....
+ 19 H008 no ..... .....
+ 19 14 no ..... .....
+ 14 H024 yes ..... ...1.
+ 14 30 no ..... .....
+ 30 H005 yes ..... ....0
+ 30 7 no ..... .....
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+ 24 H016 no ..... .....
+ 7 26 yes ..... ..1..
+ 26 28 no ..... .....
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+ 28 H021 yes ..11. .....
+ 26 3 yes ..... .1.1.
+ 3 23 yes ..... ....0
+ 23 H013 no ..... .....
+ 23 32 yes ..... 1....
+ 32 H022 no ..... .....
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+ 20 4 no ..... .....
+ 4 H034 no ..... .....
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+ 5 31 no ..... .....
+ 31 H011 no ..... .....
+ 31 34 yes ...0. .....
+ 34 H018 no ..... .....
+ 34 13 yes .0... .....
+ 13 H028 yes ..... ..0..
+ 13 11 no ..... .....
+ 11 H001 no ..... .....
+ 11 9 no ..... .....
+ 9 H015 yes ..... ...0.
+ 9 H020 yes ..... ....0
+ 3 H019 no ..... .....
+
+
+
+
+
+ +-----------------------------------------------------------------------------------------------------H006
+ !
+ ! +--------------------H030
+ ! !
+ ! +----------------------------------------------------------------------------27 +-----------------H035
+ ! ! ! !
+-10 ! +-22 +--------------H007
+ ! ! ! !
+ ! ! +-17 +-----------H023
+ ! ! ! !
+ ! ! +--6 +-----H009
+ ! ! ! +-16
+ +--1 ! ! ! +--H012
+ ! +--8 +-29
+ ! ! +--H002
+ ! !
+ ! +--------H026
+ !
+ ! +--------------------------------------------------------------------------H025
+ ! !
+ +----------------------25 +-----------------------------------------------------------------------H004
+ ! !
+ +--2 +--------------------------------------------------------------------H008
+ ! !
+ +-19 +-----------------------------------------------------------------H024
+ ! !
+ +-14 +--------------------------------------------------------------H005
+ ! !
+ ! ! +--H032
+ +-30 +-------------------------------------------------------24
+ ! ! +--H016
+ ! !
+ ! ! +-----------------------------------------------------H021
+ +--7 !
+ ! ! +--------------------------------------------------H031
+ ! ! !
+ ! ! ! +--------------------------------------------H013
+ +----26 ! !
+ ! ! +-23 +-----------------------------------------H022
+ ! ! ! ! !
+ ! ! ! +-32 +--------------------------------------H029
+ ! ! ! ! !
+ ! ! ! +-20 +-----------------------------------H034
+ +-28 ! ! !
+ ! ! +--4 +--------------------------------H033
+ ! ! ! !
+ ! ! +-18 +-----------------------------H010
+ ! ! ! !
+ ! ! +-12 +--------------------------H003
+ ! ! ! !
+ ! ! ! ! +-----H017
+ ! ! +-21 +----------------15
+ ! ! ! ! ! +--H014
+ +--3 ! ! +-33
+ ! +--5 +--H027
+ ! !
+ ! ! +--------------H011
+ ! +-------31
+ ! ! +-----------H018
+ ! +-34
+ ! ! +--------H028
+ ! +-13
+ ! ! +-----H001
+ ! +-11
+ ! ! +--H015
+ ! +--9
+ ! +--H020
+ !
+ +-----------------------------------------------H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 10 no ..... .....
+ 10 H006 yes .0... .....
+ 10 1 no ..... .....
+ 1 27 no ..... .....
+ 27 H030 yes ..... ...1.
+ 27 22 yes ...1. .....
+ 22 H035 yes ..... ....0
+ 22 17 no ..... .....
+ 17 H007 no ..... .....
+ 17 6 yes ..1.. .....
+ 6 H023 no ..... .....
+ 6 8 no ..... .....
+ 8 16 yes ..... 0....
+ 16 H009 yes ..... ..1..
+ 16 29 no ..... .....
+ 29 H012 no ..... .....
+ 29 H002 yes ....1 .....
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+ 2 H004 no ..... .....
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+ 19 H008 no ..... .....
+ 19 14 no ..... .....
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+ 14 30 no ..... .....
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+ 7 26 yes ..... ..1..
+ 26 H021 yes ..11. .....
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+ 3 23 yes ..... ....0
+ 23 H013 no ..... .....
+ 23 32 yes ..... 1....
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+ 20 4 no ..... .....
+ 4 H034 no ..... .....
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+ 15 H017 no ..... .....
+ 15 33 no ..... .....
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+ 5 31 no ..... .....
+ 31 H011 no ..... .....
+ 31 34 yes ...0. .....
+ 34 H018 no ..... .....
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+ 13 H028 yes ..... ..0..
+ 13 11 no ..... .....
+ 11 H001 no ..... .....
+ 11 9 no ..... .....
+ 9 H015 yes ..... ...0.
+ 9 H020 yes ..... ....0
+ 3 H019 no ..... .....
+
+
+
+
+
+ +-----------------------------------------------------------------------------------------------------H006
+ !
+ ! +--------------------H030
+ ! !
+ ! +----------------------------------------------------------------------------27 +-----------------H035
+ ! ! ! !
+-10 ! +-22 +--------------H007
+ ! ! ! !
+ ! ! +-17 +-----------H023
+ ! ! ! !
+ ! ! +--6 +-----H009
+ ! ! ! +-16
+ +--1 ! ! ! +--H012
+ ! +--8 +-29
+ ! ! +--H002
+ ! !
+ ! +--------H026
+ !
+ ! +--------------------------------------------------------------------------H025
+ ! !
+ +----------------------25 +-----------------------------------------------------------------------H004
+ ! !
+ +--2 +--------------------------------------------------------------------H008
+ ! !
+ +-19 +-----------------------------------------------------------------H024
+ ! !
+ +-14 +--------------------------------------------------------------H005
+ ! !
+ ! ! +--H032
+ +-30 +-------------------------------------------------------24
+ ! ! +--H016
+ ! !
+ ! ! +-----------------------------------------------------H031
+ +--7 !
+ ! ! +--------------------------------------------------H021
+ ! ! !
+ ! ! ! +--------------------------------------------H013
+ +----28 ! !
+ ! ! +-23 +-----------------------------------------H022
+ ! ! ! ! !
+ ! ! ! +-32 +--------------------------------------H029
+ ! ! ! ! !
+ ! ! ! +-20 +-----------------------------------H034
+ +-26 ! ! !
+ ! ! +--4 +--------------------------------H033
+ ! ! ! !
+ ! ! +-18 +-----------------------------H010
+ ! ! ! !
+ ! ! +-12 +--------------------------H003
+ ! ! ! !
+ ! ! ! ! +-----H017
+ ! ! +-21 +----------------15
+ ! ! ! ! ! +--H014
+ +--3 ! ! +-33
+ ! +--5 +--H027
+ ! !
+ ! ! +--------------H011
+ ! +-------31
+ ! ! +-----------H018
+ ! +-34
+ ! ! +--------H028
+ ! +-13
+ ! ! +-----H001
+ ! +-11
+ ! ! +--H015
+ ! +--9
+ ! +--H020
+ !
+ +-----------------------------------------------H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 10 no ..... .....
+ 10 H006 yes .0... .....
+ 10 1 no ..... .....
+ 1 27 no ..... .....
+ 27 H030 yes ..... ...1.
+ 27 22 yes ...1. .....
+ 22 H035 yes ..... ....0
+ 22 17 no ..... .....
+ 17 H007 no ..... .....
+ 17 6 yes ..1.. .....
+ 6 H023 no ..... .....
+ 6 8 no ..... .....
+ 8 16 yes ..... 0....
+ 16 H009 yes ..... ..1..
+ 16 29 no ..... .....
+ 29 H012 no ..... .....
+ 29 H002 yes ....1 .....
+ 8 H026 yes 0.... .....
+ 1 25 yes 0.... .....
+ 25 H025 no ..... .....
+ 25 2 yes ....1 .....
+ 2 H004 no ..... .....
+ 2 19 yes ..... 0....
+ 19 H008 no ..... .....
+ 19 14 no ..... .....
+ 14 H024 yes ..... ...1.
+ 14 30 no ..... .....
+ 30 H005 yes ..... ....0
+ 30 7 no ..... .....
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+ 24 H016 no ..... .....
+ 7 28 yes ..... ..1..
+ 28 H031 no ..... .....
+ 28 26 no ..... .....
+ 26 H021 yes ..11. .....
+ 26 3 yes ..... .1.1.
+ 3 23 yes ..... ....0
+ 23 H013 no ..... .....
+ 23 32 yes ..... 1....
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+ 20 4 no ..... .....
+ 4 H034 no ..... .....
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+ 18 H033 no ..... .....
+ 18 12 yes 1.... .....
+ 12 H010 no ..... .....
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+ 21 H003 yes ....1 .....
+ 21 5 no ..... .....
+ 5 15 yes ..1.. .....
+ 15 H017 no ..... .....
+ 15 33 no ..... .....
+ 33 H014 yes 0.... .....
+ 33 H027 yes ..... 0...0
+ 5 31 no ..... .....
+ 31 H011 no ..... .....
+ 31 34 yes ...0. .....
+ 34 H018 no ..... .....
+ 34 13 yes .0... .....
+ 13 H028 yes ..... ..0..
+ 13 11 no ..... .....
+ 11 H001 no ..... .....
+ 11 9 no ..... .....
+ 9 H015 yes ..... ...0.
+ 9 H020 yes ..... ....0
+ 3 H019 no ..... .....
+
+
+
+
+
+ +-----------------------------------------------------------------------------------------------------H006
+ !
+ ! +--------------------H030
+ ! !
+ ! +----------------------------------------------------------------------------27 +-----------------H035
+ ! ! ! !
+-10 ! +-22 +--------------H007
+ ! ! ! !
+ ! ! +-17 +-----------H023
+ ! ! ! !
+ ! ! +--6 +-----H009
+ ! ! ! +-16
+ +--1 ! ! ! +--H012
+ ! +--8 +-29
+ ! ! +--H002
+ ! !
+ ! +--------H026
+ !
+ ! +--------------------------------------------------------------------------H025
+ ! !
+ +----------------------25 +-----------------------------------------------------------------------H004
+ ! !
+ +--2 +--------------------------------------------------------------------H008
+ ! !
+ +-19 +-----------------------------------------------------------------H024
+ ! !
+ ! ! +--------------------------------------------------------------H005
+ +-14 !
+ ! ! +-----H021
+ ! ! +----------------------------------------------------26
+ ! ! ! ! +--H032
+ +-30 ! +-24
+ ! ! +--H016
+ ! !
+ ! ! +--------------------------------------------------H031
+ ! ! !
+ +--7 ! +--------------------------------------------H013
+ ! ! !
+ ! ! +-23 +-----------------------------------------H022
+ ! ! ! ! !
+ ! ! ! +-32 +--------------------------------------H029
+ ! ! ! ! !
+ ! ! ! +-20 +-----------------------------------H034
+ +-------28 ! ! !
+ ! ! +--4 +--------------------------------H033
+ ! ! ! !
+ ! ! +-18 +-----------------------------H010
+ ! ! ! !
+ ! ! +-12 +--------------------------H003
+ ! ! ! !
+ ! ! ! ! +-----H017
+ ! ! +-21 +----------------15
+ ! ! ! ! ! +--H014
+ +--3 ! ! +-33
+ ! +--5 +--H027
+ ! !
+ ! ! +--------------H011
+ ! +-------31
+ ! ! +-----------H018
+ ! +-34
+ ! ! +--------H028
+ ! +-13
+ ! ! +-----H001
+ ! +-11
+ ! ! +--H015
+ ! +--9
+ ! +--H020
+ !
+ +-----------------------------------------------H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 10 no ..... .....
+ 10 H006 yes .0... .....
+ 10 1 no ..... .....
+ 1 27 no ..... .....
+ 27 H030 yes ..... ...1.
+ 27 22 yes ...1. .....
+ 22 H035 yes ..... ....0
+ 22 17 no ..... .....
+ 17 H007 no ..... .....
+ 17 6 yes ..1.. .....
+ 6 H023 no ..... .....
+ 6 8 no ..... .....
+ 8 16 yes ..... 0....
+ 16 H009 yes ..... ..1..
+ 16 29 no ..... .....
+ 29 H012 no ..... .....
+ 29 H002 yes ....1 .....
+ 8 H026 yes 0.... .....
+ 1 25 yes 0.... .....
+ 25 H025 no ..... .....
+ 25 2 yes ....1 .....
+ 2 H004 no ..... .....
+ 2 19 yes ..... 0....
+ 19 H008 no ..... .....
+ 19 14 no ..... .....
+ 14 H024 yes ..... ...1.
+ 14 30 no ..... .....
+ 30 H005 yes ..... ....0
+ 30 7 maybe ..... ..?..
+ 7 26 yes ...1. .....
+ 26 H021 yes ..1.. ..1..
+ 26 24 maybe ..... ..0..
+ 24 H032 yes ..... .1...
+ 24 H016 no ..... .....
+ 7 28 maybe ..... ..1..
+ 28 H031 no ..... .....
+ 28 3 yes ..... .1.1.
+ 3 23 yes ..... ....0
+ 23 H013 no ..... .....
+ 23 32 yes ..... 1....
+ 32 H022 no ..... .....
+ 32 20 yes ....0 .....
+ 20 H029 yes ..... ....1
+ 20 4 no ..... .....
+ 4 H034 no ..... .....
+ 4 18 yes ...1. .....
+ 18 H033 no ..... .....
+ 18 12 yes 1.... .....
+ 12 H010 no ..... .....
+ 12 21 yes ..... ....1
+ 21 H003 yes ....1 .....
+ 21 5 no ..... .....
+ 5 15 yes ..1.. .....
+ 15 H017 no ..... .....
+ 15 33 no ..... .....
+ 33 H014 yes 0.... .....
+ 33 H027 yes ..... 0...0
+ 5 31 no ..... .....
+ 31 H011 no ..... .....
+ 31 34 yes ...0. .....
+ 34 H018 no ..... .....
+ 34 13 yes .0... .....
+ 13 H028 yes ..... ..0..
+ 13 11 no ..... .....
+ 11 H001 no ..... .....
+ 11 9 no ..... .....
+ 9 H015 yes ..... ...0.
+ 9 H020 yes ..... ....0
+ 3 H019 no ..... .....
+
+
+
+
+
+ +-----------------------------------------------------------------------------------------------------H006
+ !
+ ! +--------------------H030
+ ! !
+ ! +----------------------------------------------------------------------------27 +-----------------H007
+ ! ! ! !
+-10 ! +-17 +--------------H035
+ ! ! ! !
+ ! ! +-22 +-----------H023
+ ! ! ! !
+ ! ! +--6 +-----H009
+ ! ! ! +-16
+ +--1 ! ! ! +--H012
+ ! +--8 +-29
+ ! ! +--H002
+ ! !
+ ! +--------H026
+ !
+ ! +--------------------------------------------------------------------------H025
+ ! !
+ +----------------------25 +-----------------------------------------------------------------------H004
+ ! !
+ +--2 +--------------------------------------------------------------------H008
+ ! !
+ +-19 +-----------------------------------------------------------------H024
+ ! !
+ ! ! +--------------------------------------------------------------H005
+ +-14 !
+ ! ! +--H021
+ ! ! +-26
+ ! ! +----------------------------------------------------24 +--H032
+ +-30 ! !
+ ! ! +-----H016
+ ! !
+ ! ! +--------------------------------------------------H031
+ ! ! !
+ +--7 ! +--------------------------------------------H013
+ ! ! !
+ ! ! +-23 +-----------------------------------------H022
+ ! ! ! ! !
+ ! ! ! +-32 +--------------------------------------H029
+ ! ! ! ! !
+ ! ! ! +-20 +-----------------------------------H034
+ +-------28 ! ! !
+ ! ! +--4 +--------------------------------H033
+ ! ! ! !
+ ! ! +-18 +-----------------------------H010
+ ! ! ! !
+ ! ! ! ! +-----H017
+ ! ! +-12 +-------------------15
+ ! ! ! ! ! +--H014
+ ! ! ! ! +-33
+ ! ! ! ! +--H027
+ +--3 +--5
+ ! ! +--H011
+ ! ! +-------------31
+ ! ! ! +--H003
+ ! +-------21
+ ! ! +-----------H018
+ ! +----34
+ ! ! +--------H028
+ ! +-13
+ ! ! +-----H001
+ ! +-11
+ ! ! +--H015
+ ! +--9
+ ! +--H020
+ !
+ +-----------------------------------------------H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 10 no ..... .....
+ 10 H006 yes .0... .....
+ 10 1 no ..... .....
+ 1 27 no ..... .....
+ 27 H030 yes ..... ...1.
+ 27 17 yes ...1. .....
+ 17 H007 no ..... .....
+ 17 22 no ..... .....
+ 22 H035 yes ..... ....0
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+ 6 H023 no ..... .....
+ 6 8 no ..... .....
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+ 16 H009 yes ..... ..1..
+ 16 29 no ..... .....
+ 29 H012 no ..... .....
+ 29 H002 yes ....1 .....
+ 8 H026 yes 0.... .....
+ 1 25 yes 0.... .....
+ 25 H025 no ..... .....
+ 25 2 yes ....1 .....
+ 2 H004 no ..... .....
+ 2 19 yes ..... 0....
+ 19 H008 no ..... .....
+ 19 14 no ..... .....
+ 14 H024 yes ..... ...1.
+ 14 30 no ..... .....
+ 30 H005 yes ..... ....0
+ 30 7 no ..... .....
+ 7 24 yes ...1. .....
+ 24 26 no ..... .....
+ 26 H021 yes ..1.. ..1..
+ 26 H032 yes ..... .1...
+ 24 H016 no ..... .....
+ 7 28 yes ..... ..1..
+ 28 H031 no ..... .....
+ 28 3 yes ..... .1.1.
+ 3 23 yes ..... ....0
+ 23 H013 no ..... .....
+ 23 32 yes ..... 1....
+ 32 H022 no ..... .....
+ 32 20 yes ....0 .....
+ 20 H029 yes ..... ....1
+ 20 4 no ..... .....
+ 4 H034 no ..... .....
+ 4 18 yes ...1. .....
+ 18 H033 no ..... .....
+ 18 12 yes 1.... .....
+ 12 H010 no ..... .....
+ 12 5 yes ..... ....1
+ 5 15 yes ..1.. .....
+ 15 H017 no ..... .....
+ 15 33 no ..... .....
+ 33 H014 yes 0.... .....
+ 33 H027 yes ..... 0...0
+ 5 21 no ..... .....
+ 21 31 no ..... .....
+ 31 H011 no ..... .....
+ 31 H003 yes ....1 .....
+ 21 34 yes ...0. .....
+ 34 H018 no ..... .....
+ 34 13 yes .0... .....
+ 13 H028 yes ..... ..0..
+ 13 11 no ..... .....
+ 11 H001 no ..... .....
+ 11 9 no ..... .....
+ 9 H015 yes ..... ...0.
+ 9 H020 yes ..... ....0
+ 3 H019 no ..... .....
+
+
+
+
+
+ +-----------------------------------------------------------------------------------------------------H006
+ !
+ ! +--------------------H030
+ ! !
+ ! +----------------------------------------------------------------------------27 +-----------------H007
+ ! ! ! !
+-10 ! +-17 +--------------H035
+ ! ! ! !
+ ! ! +-22 +-----------H023
+ ! ! ! !
+ ! ! +--6 +-----H009
+ ! ! ! +-16
+ +--1 ! ! ! +--H012
+ ! +--8 +-29
+ ! ! +--H002
+ ! !
+ ! +--------H026
+ !
+ ! +--------------------------------------------------------------------------H025
+ ! !
+ +----------------------25 +-----------------------------------------------------------------------H004
+ ! !
+ +--2 +--------------------------------------------------------------------H008
+ ! !
+ +-19 +-----------------------------------------------------------------H024
+ ! !
+ ! ! +--------------------------------------------------------------H005
+ +-14 !
+ ! ! +--H021
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+ ! ! +----------------------------------------------------24 +--H032
+ +-30 ! !
+ ! ! +-----H016
+ ! !
+ ! ! +--------------------------------------------------H031
+ ! ! !
+ +--7 ! +--------------------------------------------H013
+ ! ! !
+ ! ! +-23 +-----------------------------------------H022
+ ! ! ! ! !
+ ! ! ! +-32 +--------------------------------------H029
+ ! ! ! ! !
+ ! ! ! +-20 +-----------------------------------H034
+ +-------28 ! ! !
+ ! ! +--4 +--------------------------------H033
+ ! ! ! !
+ ! ! +-18 +-----------------------------H010
+ ! ! ! !
+ ! ! ! ! +-----H017
+ ! ! +-12 +-------------------15
+ ! ! ! ! ! +--H014
+ ! ! ! ! +-33
+ ! ! +--5 +--H027
+ +--3 !
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+ ! +-31
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+ ! +-34
+ ! ! +--------H028
+ ! +-13
+ ! ! +-----H001
+ ! +-11
+ ! ! +--H015
+ ! +--9
+ ! +--H020
+ !
+ +-----------------------------------------------H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 10 no ..... .....
+ 10 H006 yes .0... .....
+ 10 1 no ..... .....
+ 1 27 no ..... .....
+ 27 H030 yes ..... ...1.
+ 27 17 yes ...1. .....
+ 17 H007 no ..... .....
+ 17 22 no ..... .....
+ 22 H035 yes ..... ....0
+ 22 6 yes ..1.. .....
+ 6 H023 no ..... .....
+ 6 8 no ..... .....
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+ 16 H009 yes ..... ..1..
+ 16 29 no ..... .....
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+ 29 H002 yes ....1 .....
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+ 1 25 yes 0.... .....
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+ 2 H004 no ..... .....
+ 2 19 yes ..... 0....
+ 19 H008 no ..... .....
+ 19 14 no ..... .....
+ 14 H024 yes ..... ...1.
+ 14 30 no ..... .....
+ 30 H005 yes ..... ....0
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+ 3 23 yes ..... ....0
+ 23 H013 no ..... .....
+ 23 32 yes ..... 1....
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+ 20 4 no ..... .....
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+ 15 H017 no ..... .....
+ 15 33 no ..... .....
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+ 5 21 no ..... .....
+ 21 H003 yes ....1 .....
+ 21 31 no ..... .....
+ 31 H011 no ..... .....
+ 31 34 yes ...0. .....
+ 34 H018 no ..... .....
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+ 13 H028 yes ..... ..0..
+ 13 11 no ..... .....
+ 11 H001 no ..... .....
+ 11 9 no ..... .....
+ 9 H015 yes ..... ...0.
+ 9 H020 yes ..... ....0
+ 3 H019 no ..... .....
+
+
+
+
+
+ +-----------------------------------------------------------------------------------------------------H006
+ !
+ ! +--------------------H030
+ ! !
+ ! +----------------------------------------------------------------------------27 +-----------------H007
+ ! ! ! !
+-10 ! +-17 +--------------H035
+ ! ! ! !
+ ! ! +-22 +-----------H023
+ ! ! ! !
+ ! ! +--6 +-----H009
+ ! ! ! +-16
+ +--1 ! ! ! +--H012
+ ! +--8 +-29
+ ! ! +--H002
+ ! !
+ ! +--------H026
+ !
+ ! +--------------------------------------------------------------------------H025
+ ! !
+ +----------------------25 +-----------------------------------------------------------------------H004
+ ! !
+ +--2 +--------------------------------------------------------------------H008
+ ! !
+ +-19 +-----------------------------------------------------------------H024
+ ! !
+ ! ! +--------------------------------------------------------------H005
+ +-14 !
+ ! ! +--H021
+ ! ! +-26
+ ! ! +----------------------------------------------------24 +--H032
+ +-30 ! !
+ ! ! +-----H016
+ ! !
+ ! ! +--------------------------------------------------H031
+ ! ! !
+ +--7 ! +--------------------------------------------H013
+ ! ! !
+ ! ! +-23 +-----------------------------------------H022
+ ! ! ! ! !
+ ! ! ! +-32 +--------------------------------------H029
+ ! ! ! ! !
+ ! ! ! +-20 +-----------------------------------H034
+ +-------28 ! ! !
+ ! ! +--4 +--------------------------------H033
+ ! ! ! !
+ ! ! +-18 +-----------------------------H010
+ ! ! ! !
+ ! ! ! ! +-----H017
+ ! ! +-12 +-------------------15
+ ! ! ! ! ! +--H014
+ ! ! ! ! +-33
+ ! ! +--5 +--H027
+ +--3 !
+ ! ! +-----------------H011
+ ! +-------31
+ ! ! +--------------H003
+ ! +-21
+ ! ! +-----------H018
+ ! +-34
+ ! ! +--------H028
+ ! +-13
+ ! ! +-----H001
+ ! +-11
+ ! ! +--H015
+ ! +--9
+ ! +--H020
+ !
+ +-----------------------------------------------H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 10 no ..... .....
+ 10 H006 yes .0... .....
+ 10 1 no ..... .....
+ 1 27 no ..... .....
+ 27 H030 yes ..... ...1.
+ 27 17 yes ...1. .....
+ 17 H007 no ..... .....
+ 17 22 no ..... .....
+ 22 H035 yes ..... ....0
+ 22 6 yes ..1.. .....
+ 6 H023 no ..... .....
+ 6 8 no ..... .....
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+ 16 H009 yes ..... ..1..
+ 16 29 no ..... .....
+ 29 H012 no ..... .....
+ 29 H002 yes ....1 .....
+ 8 H026 yes 0.... .....
+ 1 25 yes 0.... .....
+ 25 H025 no ..... .....
+ 25 2 yes ....1 .....
+ 2 H004 no ..... .....
+ 2 19 yes ..... 0....
+ 19 H008 no ..... .....
+ 19 14 no ..... .....
+ 14 H024 yes ..... ...1.
+ 14 30 no ..... .....
+ 30 H005 yes ..... ....0
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+ 24 26 no ..... .....
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+ 7 28 yes ..... ..1..
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+ 3 23 yes ..... ....0
+ 23 H013 no ..... .....
+ 23 32 yes ..... 1....
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+ 32 20 yes ....0 .....
+ 20 H029 yes ..... ....1
+ 20 4 no ..... .....
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+ 4 18 yes ...1. .....
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+ 12 H010 no ..... .....
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+ 5 15 yes ..1.. .....
+ 15 H017 no ..... .....
+ 15 33 no ..... .....
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+ 5 31 no ..... .....
+ 31 H011 no ..... .....
+ 31 21 no ..... .....
+ 21 H003 yes ....1 .....
+ 21 34 yes ...0. .....
+ 34 H018 no ..... .....
+ 34 13 yes .0... .....
+ 13 H028 yes ..... ..0..
+ 13 11 no ..... .....
+ 11 H001 no ..... .....
+ 11 9 no ..... .....
+ 9 H015 yes ..... ...0.
+ 9 H020 yes ..... ....0
+ 3 H019 no ..... .....
+
+
+
+
+
+ +-----------------------------------------------------------------------------------------------------H030
+ !
+ ! +--------------------------------------------------------------------------------------------------H006
+ ! !
+-27 ! +--------------------H035
+ ! ! !
+ ! ! +-------------------------------------------------------------------------22 +-----------------H007
+ ! ! ! ! !
+ +-10 ! +-17 +--------------H023
+ ! ! ! !
+ ! ! ! ! +--------H012
+ ! ! +--6 !
+ ! ! ! +-29 +--H021
+ ! ! ! ! ! +-26
+ +--1 ! ! +-16 +--H009
+ ! +--8 !
+ ! ! +-----H002
+ ! !
+ ! +-----------H026
+ !
+ ! +-----------------------------------------------------------------------H025
+ ! !
+ +----------------------25 +--------------------------------------------------------------------H004
+ ! !
+ ! ! +--H005
+ +--2 +-------------------------------------------------------------30
+ ! ! +--H008
+ ! !
+ +-19 +-----------------------------------------------------------H024
+ ! !
+ ! ! +--H032
+ ! ! +----------------------------------------------------24
+ +----14 ! +--H016
+ ! !
+ ! ! +--------------------------------------------------H031
+ ! ! !
+ ! ! ! +--------------------------------------------H013
+ +--7 ! !
+ ! ! +-23 +-----------------------------------------H022
+ ! ! ! ! !
+ ! ! ! +-32 +--------------------------------------H029
+ ! ! ! ! !
+ ! ! ! +-20 +-----------------------------------H034
+ +----28 ! ! !
+ ! ! +--4 +--------------------------------H033
+ ! ! ! !
+ ! ! +-18 +-----------------------------H010
+ ! ! ! !
+ ! ! +-12 +--------------------------H011
+ ! ! ! !
+ ! ! ! ! +-----H014
+ ! ! +-31 +----------------33
+ ! ! ! ! ! +--H017
+ +--3 ! ! +-15
+ ! +--5 +--H027
+ ! !
+ ! ! +--------------H003
+ ! +-------21
+ ! ! +-----------H018
+ ! +-34
+ ! ! +--------H028
+ ! +-13
+ ! ! +-----H001
+ ! +-11
+ ! ! +--H015
+ ! +--9
+ ! +--H020
+ !
+ +-----------------------------------------------H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 27 no ..... .....
+ 27 H030 yes ..... ...1.
+ 27 10 no ..... .....
+ 10 H006 yes .0... .....
+ 10 1 no ..... .....
+ 1 22 yes ...1. .....
+ 22 H035 yes ..... ....0
+ 22 17 no ..... .....
+ 17 H007 no ..... .....
+ 17 6 yes ..1.. .....
+ 6 H023 no ..... .....
+ 6 8 no ..... .....
+ 8 29 yes ..... 0....
+ 29 H012 no ..... .....
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+ 16 26 yes ..... ..1..
+ 26 H021 yes 0...1 .....
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+ 1 25 yes 0.... .....
+ 25 H025 no ..... .....
+ 25 2 yes ....1 .....
+ 2 H004 no ..... .....
+ 2 19 yes ..... 0....
+ 19 30 no ..... .....
+ 30 H005 yes ..... ....0
+ 30 H008 no ..... .....
+ 19 14 no ..... .....
+ 14 H024 yes ..... ...1.
+ 14 7 no ..... .....
+ 7 24 yes ...1. .....
+ 24 H032 yes ..... .1...
+ 24 H016 no ..... .....
+ 7 28 yes ..... ..1..
+ 28 H031 no ..... .....
+ 28 3 yes ..... .1.1.
+ 3 23 yes ..... ....0
+ 23 H013 no ..... .....
+ 23 32 yes ..... 1....
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+ 32 20 yes ....0 .....
+ 20 H029 yes ..... ....1
+ 20 4 no ..... .....
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+ 4 18 yes ...1. .....
+ 18 H033 no ..... .....
+ 18 12 yes 1.... .....
+ 12 H010 no ..... .....
+ 12 31 yes ..... ....1
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+ 31 5 no ..... .....
+ 5 33 yes ..1.. .....
+ 33 H014 yes 0.... .....
+ 33 15 no ..... .....
+ 15 H017 no ..... .....
+ 15 H027 yes ..... 0...0
+ 5 21 no ..... .....
+ 21 H003 yes ....1 .....
+ 21 34 yes ...0. .....
+ 34 H018 no ..... .....
+ 34 13 yes .0... .....
+ 13 H028 yes ..... ..0..
+ 13 11 no ..... .....
+ 11 H001 no ..... .....
+ 11 9 no ..... .....
+ 9 H015 yes ..... ...0.
+ 9 H020 yes ..... ....0
+ 3 H019 no ..... .....
+
+
+
+
+
+ +-----------------------------------------------------------------------------------------------------H030
+ !
+ ! +--------------------------------------------------------------------------------------------------H006
+ ! !
+-27 ! +--H035
+ ! ! +----------------22
+ ! ! ! +--H007
+ ! ! !
+ +-10 +-------------------------------------------------------------------------17 +--------------H023
+ ! ! ! !
+ ! ! ! ! +--------H012
+ ! ! +-----6 !
+ ! ! ! +-29 +--H021
+ ! ! ! ! ! +-26
+ ! ! ! ! +-16 +--H009
+ +--1 +--8 !
+ ! ! +-----H002
+ ! !
+ ! +-----------H026
+ !
+ ! +-----------------------------------------------------------------------H025
+ ! !
+ +----------------------25 +--------------------------------------------------------------------H004
+ ! !
+ ! ! +--H005
+ +--2 +-------------------------------------------------------------30
+ ! ! +--H008
+ ! !
+ +-19 +-----------------------------------------------------------H024
+ ! !
+ ! ! +--H032
+ ! ! +----------------------------------------------------24
+ +----14 ! +--H016
+ ! !
+ ! ! +--------------------------------------------------H031
+ ! ! !
+ ! ! ! +--------------------------------------------H013
+ +--7 ! !
+ ! ! +-23 +-----------------------------------------H022
+ ! ! ! ! !
+ ! ! ! +-32 +--------------------------------------H029
+ ! ! ! ! !
+ ! ! ! +-20 +-----------------------------------H034
+ +----28 ! ! !
+ ! ! +--4 +--------------------------------H033
+ ! ! ! !
+ ! ! ! ! +-----------------------------H010
+ ! ! +-18 !
+ ! ! ! ! +-----------H011
+ ! ! ! ! +-------------31
+ ! ! +-12 ! ! +--------H003
+ ! ! ! ! +-21
+ ! ! ! ! ! +-----H014
+ +--3 ! ! +-33
+ ! +--5 ! +--H017
+ ! ! +-15
+ ! ! +--H027
+ ! !
+ ! ! +-----------H018
+ ! +-------------34
+ ! ! +--------H028
+ ! +-13
+ ! ! +-----H001
+ ! +-11
+ ! ! +--H015
+ ! +--9
+ ! +--H020
+ !
+ +-----------------------------------------------H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 27 no ..... .....
+ 27 H030 yes ..... ...1.
+ 27 10 no ..... .....
+ 10 H006 yes .0... .....
+ 10 1 no ..... .....
+ 1 17 yes ...1. .....
+ 17 22 no ..... .....
+ 22 H035 yes ..... ....0
+ 22 H007 no ..... .....
+ 17 6 yes ..1.. .....
+ 6 H023 no ..... .....
+ 6 8 no ..... .....
+ 8 29 yes ..... 0....
+ 29 H012 no ..... .....
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+ 16 26 yes ..... ..1..
+ 26 H021 yes 0...1 .....
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+ 16 H002 maybe ....1 .....
+ 8 H026 yes 0.... .....
+ 1 25 yes 0.... .....
+ 25 H025 no ..... .....
+ 25 2 yes ....1 .....
+ 2 H004 no ..... .....
+ 2 19 yes ..... 0....
+ 19 30 no ..... .....
+ 30 H005 yes ..... ....0
+ 30 H008 no ..... .....
+ 19 14 no ..... .....
+ 14 H024 yes ..... ...1.
+ 14 7 no ..... .....
+ 7 24 yes ...1. .....
+ 24 H032 yes ..... .1...
+ 24 H016 no ..... .....
+ 7 28 yes ..... ..1..
+ 28 H031 no ..... .....
+ 28 3 yes ..... .1.1.
+ 3 23 yes ..... ....0
+ 23 H013 no ..... .....
+ 23 32 yes ..... 1....
+ 32 H022 no ..... .....
+ 32 20 yes ....0 .....
+ 20 H029 yes ..... ....1
+ 20 4 no ..... .....
+ 4 H034 no ..... .....
+ 4 18 yes ...1. .....
+ 18 H033 no ..... .....
+ 18 12 yes 1.... .....
+ 12 H010 no ..... .....
+ 12 5 yes ..... ....1
+ 5 31 no ..... .....
+ 31 H011 no ..... .....
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+ 21 H003 yes ....1 .....
+ 21 33 yes ..1.. .....
+ 33 H014 yes 0.... .....
+ 33 15 no ..... .....
+ 15 H017 no ..... .....
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+ 5 34 yes ...0. .....
+ 34 H018 no ..... .....
+ 34 13 yes .0... .....
+ 13 H028 yes ..... ..0..
+ 13 11 no ..... .....
+ 11 H001 no ..... .....
+ 11 9 no ..... .....
+ 9 H015 yes ..... ...0.
+ 9 H020 yes ..... ....0
+ 3 H019 no ..... .....
+
+
+
+
+
+ +-----------------------------------------------------------------------------------------------------H030
+ !
+ ! +--------------------------------------------------------------------------------------------------H006
+ ! !
+-27 ! +--------------------H007
+ ! ! !
+ ! ! +-------------------------------------------------------------------------17 +-----------------H035
+ ! ! ! ! !
+ +-10 ! +-22 +--------------H023
+ ! ! ! !
+ ! ! ! ! +--------H012
+ ! ! +--6 !
+ ! ! ! +-29 +--H021
+ ! ! ! ! ! +-26
+ +--1 ! ! +-16 +--H009
+ ! +--8 !
+ ! ! +-----H002
+ ! !
+ ! +-----------H026
+ !
+ ! +-----------------------------------------------------------------------H025
+ ! !
+ +----------------------25 +--------------------------------------------------------------------H004
+ ! !
+ ! ! +--H005
+ +--2 +-------------------------------------------------------------30
+ ! ! +--H008
+ ! !
+ +-19 +-----------------------------------------------------------H024
+ ! !
+ ! ! +--H032
+ ! ! +----------------------------------------------------24
+ +----14 ! +--H016
+ ! !
+ ! ! +--------------------------------------------------H031
+ ! ! !
+ ! ! ! +--------------------------------------------H013
+ +--7 ! !
+ ! ! +-23 +-----------------------------------------H022
+ ! ! ! ! !
+ ! ! ! +-32 +--------------------------------------H029
+ ! ! ! ! !
+ ! ! ! +-20 +-----------------------------------H034
+ +----28 ! ! !
+ ! ! +--4 +--------------------------------H033
+ ! ! ! !
+ ! ! ! ! +-----------------------------H010
+ ! ! +-18 !
+ ! ! ! ! +-----------H011
+ ! ! ! ! +-------------31
+ ! ! +-12 ! ! +--------H003
+ ! ! ! ! +-21
+ ! ! ! ! ! +-----H014
+ +--3 ! ! +-33
+ ! +--5 ! +--H017
+ ! ! +-15
+ ! ! +--H027
+ ! !
+ ! ! +-----------H018
+ ! +-------------34
+ ! ! +--------H028
+ ! +-13
+ ! ! +-----H001
+ ! +-11
+ ! ! +--H015
+ ! +--9
+ ! +--H020
+ !
+ +-----------------------------------------------H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 27 no ..... .....
+ 27 H030 yes ..... ...1.
+ 27 10 no ..... .....
+ 10 H006 yes .0... .....
+ 10 1 no ..... .....
+ 1 17 yes ...1. .....
+ 17 H007 no ..... .....
+ 17 22 no ..... .....
+ 22 H035 yes ..... ....0
+ 22 6 yes ..1.. .....
+ 6 H023 no ..... .....
+ 6 8 no ..... .....
+ 8 29 yes ..... 0....
+ 29 H012 no ..... .....
+ 29 16 maybe ....? .....
+ 16 26 yes ..... ..1..
+ 26 H021 yes 0...1 .....
+ 26 H009 maybe ....0 .....
+ 16 H002 maybe ....1 .....
+ 8 H026 yes 0.... .....
+ 1 25 yes 0.... .....
+ 25 H025 no ..... .....
+ 25 2 yes ....1 .....
+ 2 H004 no ..... .....
+ 2 19 yes ..... 0....
+ 19 30 no ..... .....
+ 30 H005 yes ..... ....0
+ 30 H008 no ..... .....
+ 19 14 no ..... .....
+ 14 H024 yes ..... ...1.
+ 14 7 no ..... .....
+ 7 24 yes ...1. .....
+ 24 H032 yes ..... .1...
+ 24 H016 no ..... .....
+ 7 28 yes ..... ..1..
+ 28 H031 no ..... .....
+ 28 3 yes ..... .1.1.
+ 3 23 yes ..... ....0
+ 23 H013 no ..... .....
+ 23 32 yes ..... 1....
+ 32 H022 no ..... .....
+ 32 20 yes ....0 .....
+ 20 H029 yes ..... ....1
+ 20 4 no ..... .....
+ 4 H034 no ..... .....
+ 4 18 yes ...1. .....
+ 18 H033 no ..... .....
+ 18 12 yes 1.... .....
+ 12 H010 no ..... .....
+ 12 5 yes ..... ....1
+ 5 31 no ..... .....
+ 31 H011 no ..... .....
+ 31 21 no ..... .....
+ 21 H003 yes ....1 .....
+ 21 33 yes ..1.. .....
+ 33 H014 yes 0.... .....
+ 33 15 no ..... .....
+ 15 H017 no ..... .....
+ 15 H027 yes ..... 0...0
+ 5 34 yes ...0. .....
+ 34 H018 no ..... .....
+ 34 13 yes .0... .....
+ 13 H028 yes ..... ..0..
+ 13 11 no ..... .....
+ 11 H001 no ..... .....
+ 11 9 no ..... .....
+ 9 H015 yes ..... ...0.
+ 9 H020 yes ..... ....0
+ 3 H019 no ..... .....
+
+
+
+
+
+ +-----------------------------------------------------------------------------------------------------H006
+ !
+ ! +--------------------H030
+ ! !
+ ! +----------------------------------------------------------------------------27 +-----------------H007
+ ! ! ! !
+-10 ! +-17 +--------------H035
+ ! ! ! !
+ ! ! +-22 +-----------H023
+ ! ! ! !
+ ! ! +--6 +-----H009
+ ! ! ! +-16
+ +--1 ! ! ! +--H012
+ ! +--8 +-29
+ ! ! +--H002
+ ! !
+ ! +--------H026
+ !
+ ! +--------------------------------------------------------------------------H025
+ ! !
+ +----------------------25 +-----------------------------------------------------------------------H004
+ ! !
+ +--2 +--------------------------------------------------------------------H008
+ ! !
+ +-19 +-----------------------------------------------------------------H024
+ ! !
+ ! ! +--------------------------------------------------------------H005
+ +-14 !
+ ! ! +--H021
+ ! ! +-26
+ ! ! +----------------------------------------------------24 +--H032
+ +-30 ! !
+ ! ! +-----H016
+ ! !
+ ! ! +--------------------------------------------------H031
+ ! ! !
+ +--7 ! +--------------------------------------------H013
+ ! ! !
+ ! ! +-23 +-----------------------------------------H022
+ ! ! ! ! !
+ ! ! ! +-32 +--------------------------------------H029
+ ! ! ! ! !
+ ! ! ! +-20 +-----------------------------------H034
+ +-------28 ! ! !
+ ! ! +--4 +--------------------------------H033
+ ! ! ! !
+ ! ! +-18 +-----------------------------H010
+ ! ! ! !
+ ! ! ! ! +--------H003
+ ! ! +-12 +----------------21
+ ! ! ! ! ! +-----H017
+ ! ! ! ! +-15
+ ! ! ! ! ! +--H014
+ +--3 +--5 +-33
+ ! ! +--H027
+ ! !
+ ! ! +--------------H011
+ ! +----------31
+ ! ! +-----------H018
+ ! +-34
+ ! ! +--------H028
+ ! +-13
+ ! ! +-----H001
+ ! +-11
+ ! ! +--H015
+ ! +--9
+ ! +--H020
+ !
+ +-----------------------------------------------H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 10 no ..... .....
+ 10 H006 yes .0... .....
+ 10 1 no ..... .....
+ 1 27 no ..... .....
+ 27 H030 yes ..... ...1.
+ 27 17 yes ...1. .....
+ 17 H007 no ..... .....
+ 17 22 no ..... .....
+ 22 H035 yes ..... ....0
+ 22 6 yes ..1.. .....
+ 6 H023 no ..... .....
+ 6 8 no ..... .....
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+ 16 H009 yes ..... ..1..
+ 16 29 no ..... .....
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+ 29 H002 yes ....1 .....
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+ 3 23 yes ..... ....0
+ 23 H013 no ..... .....
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+ 20 4 no ..... .....
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+ 13 H028 yes ..... ..0..
+ 13 11 no ..... .....
+ 11 H001 no ..... .....
+ 11 9 no ..... .....
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+ 9 H020 yes ..... ....0
+ 3 H019 no ..... .....
+
+
+
+
+
+ +-----------------------------------------------------------------------------------------------------H030
+ !
+ ! +--------------------------------------------------------------------------------------------------H006
+ ! !
+-27 ! +--------------------H035
+ ! ! !
+ ! ! +-------------------------------------------------------------------------22 +-----------------H007
+ ! ! ! ! !
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+ ! ! ! +-29 +--H021
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+ +--1 ! ! +-16 +--H009
+ ! +--8 !
+ ! ! +-----H002
+ ! !
+ ! +-----------H026
+ !
+ ! +-----------------------------------------------------------------------H025
+ ! !
+ +----------------------25 +--------------------------------------------------------------------H004
+ ! !
+ ! ! +--H005
+ +--2 +-------------------------------------------------------------30
+ ! ! +--H008
+ ! !
+ +-19 +-----------------------------------------------------------H024
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+ ! ! +--H032
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+ +----14 ! +--H016
+ ! !
+ ! ! +--------------------------------------------------H031
+ ! ! !
+ ! ! ! +--------------------------------------------H013
+ +--7 ! !
+ ! ! +-23 +-----------------------------------------H022
+ ! ! ! ! !
+ ! ! ! +-32 +--------------------------------------H029
+ ! ! ! ! !
+ ! ! ! +-20 +-----------------------------------H034
+ +----28 ! ! !
+ ! ! +--4 +--------------------------------H033
+ ! ! ! !
+ ! ! +-18 +-----------------------------H010
+ ! ! ! !
+ ! ! +-12 +--------------------------H011
+ ! ! ! !
+ ! ! ! ! +--------H003
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+ ! ! ! ! ! +-----H014
+ +--3 ! ! +-33
+ ! ! ! ! +--H017
+ ! +--5 +-15
+ ! ! +--H027
+ ! !
+ ! ! +-----------H018
+ ! +----------34
+ ! ! +--------H028
+ ! +-13
+ ! ! +-----H001
+ ! +-11
+ ! ! +--H015
+ ! +--9
+ ! +--H020
+ !
+ +-----------------------------------------------H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 27 no ..... .....
+ 27 H030 yes ..... ...1.
+ 27 10 no ..... .....
+ 10 H006 yes .0... .....
+ 10 1 no ..... .....
+ 1 22 yes ...1. .....
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+ 6 H023 no ..... .....
+ 6 8 no ..... .....
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+ 29 H012 no ..... .....
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+ 1 25 yes 0.... .....
+ 25 H025 no ..... .....
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+ 2 19 yes ..... 0....
+ 19 30 no ..... .....
+ 30 H005 yes ..... ....0
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+ 23 H013 no ..... .....
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+ 13 H028 yes ..... ..0..
+ 13 11 no ..... .....
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+ 9 H020 yes ..... ....0
+ 3 H019 no ..... .....
+
+
+
+
+
+ +-----------------------------------------------------------------------------------------------------H030
+ !
+ ! +--------------------------------------------------------------------------------------------------H006
+ ! !
+-27 ! +--------------------H035
+ ! ! !
+ ! ! +-------------------------------------------------------------------------22 +-----------------H007
+ ! ! ! ! !
+ +-10 ! +-17 +--------------H023
+ ! ! ! !
+ ! ! ! ! +--------H012
+ ! ! +--6 !
+ ! ! ! +-29 +--H021
+ ! ! ! ! ! +-26
+ +--1 ! ! +-16 +--H009
+ ! +--8 !
+ ! ! +-----H002
+ ! !
+ ! +-----------H026
+ !
+ ! +-----------------------------------------------------------------------H025
+ ! !
+ +----------------------25 +--------------------------------------------------------------------H004
+ ! !
+ ! ! +--H005
+ +--2 +-------------------------------------------------------------30
+ ! ! +--H008
+ ! !
+ +-19 +-----------------------------------------------------------H024
+ ! !
+ ! ! +--H032
+ ! ! +----------------------------------------------------24
+ +----14 ! +--H016
+ ! !
+ ! ! +--------------------------------------------------H031
+ ! ! !
+ ! ! ! +--------------------------------------------H013
+ +--7 ! !
+ ! ! +-23 +-----------------------------------------H022
+ ! ! ! ! !
+ ! ! ! +-32 +--------------------------------------H029
+ ! ! ! ! !
+ ! ! ! +-20 +-----------------------------------H034
+ +----28 ! ! !
+ ! ! +--4 +--------------------------------H033
+ ! ! ! !
+ ! ! +-18 +-----------------------------H010
+ ! ! ! !
+ ! ! ! ! +--------H003
+ ! ! +-12 +----------------21
+ ! ! ! ! ! +-----H014
+ ! ! ! ! +-33
+ ! ! ! ! ! +--H017
+ +--3 +--5 +-15
+ ! ! +--H027
+ ! !
+ ! ! +--------------H011
+ ! +----------31
+ ! ! +-----------H018
+ ! +-34
+ ! ! +--------H028
+ ! +-13
+ ! ! +-----H001
+ ! +-11
+ ! ! +--H015
+ ! +--9
+ ! +--H020
+ !
+ +-----------------------------------------------H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 27 no ..... .....
+ 27 H030 yes ..... ...1.
+ 27 10 no ..... .....
+ 10 H006 yes .0... .....
+ 10 1 no ..... .....
+ 1 22 yes ...1. .....
+ 22 H035 yes ..... ....0
+ 22 17 no ..... .....
+ 17 H007 no ..... .....
+ 17 6 yes ..1.. .....
+ 6 H023 no ..... .....
+ 6 8 no ..... .....
+ 8 29 yes ..... 0....
+ 29 H012 no ..... .....
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+ 1 25 yes 0.... .....
+ 25 H025 no ..... .....
+ 25 2 yes ....1 .....
+ 2 H004 no ..... .....
+ 2 19 yes ..... 0....
+ 19 30 no ..... .....
+ 30 H005 yes ..... ....0
+ 30 H008 no ..... .....
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+ 14 7 no ..... .....
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+ 3 23 yes ..... ....0
+ 23 H013 no ..... .....
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+ 5 31 no ..... .....
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+ 13 H028 yes ..... ..0..
+ 13 11 no ..... .....
+ 11 H001 no ..... .....
+ 11 9 no ..... .....
+ 9 H015 yes ..... ...0.
+ 9 H020 yes ..... ....0
+ 3 H019 no ..... .....
+
+
+
+
+
+ +-----------------------------------------------------------------------------------------------------H030
+ !
+ ! +--------------------------------------------------------------------------------------------------H006
+ ! !
+-27 ! +--------------------H035
+ ! ! !
+ ! ! +-------------------------------------------------------------------------22 +-----------------H007
+ ! ! ! ! !
+ +-10 ! +-17 +--------------H023
+ ! ! ! !
+ ! ! ! ! +--------H012
+ ! ! +--6 !
+ ! ! ! +-29 +--H021
+ ! ! ! ! ! +-26
+ +--1 ! ! +-16 +--H009
+ ! +--8 !
+ ! ! +-----H002
+ ! !
+ ! +-----------H026
+ !
+ ! +-----------------------------------------------------------------------H025
+ ! !
+ +----------------------25 +--------------------------------------------------------------------H004
+ ! !
+ ! ! +--H005
+ +--2 +-------------------------------------------------------------30
+ ! ! +--H008
+ ! !
+ +-19 +-----------------------------------------------------------H024
+ ! !
+ ! ! +--H032
+ ! ! +----------------------------------------------------24
+ +----14 ! +--H016
+ ! !
+ ! ! +--------------------------------------------------H031
+ ! ! !
+ ! ! ! +--------------------------------------------H013
+ +--7 ! !
+ ! ! +-23 +-----------------------------------------H022
+ ! ! ! ! !
+ ! ! ! +-32 +--------------------------------------H029
+ ! ! ! ! !
+ ! ! ! +-20 +-----------------------------------H034
+ +----28 ! ! !
+ ! ! +--4 +--------------------------------H033
+ ! ! ! !
+ ! ! ! ! +-----------------------------H010
+ ! ! +-18 !
+ ! ! ! ! +-----------H011
+ ! ! ! ! +-------------31
+ ! ! +-12 ! ! +--------H003
+ ! ! ! ! +-21
+ ! ! ! ! ! +-----H014
+ +--3 ! ! +-33
+ ! +--5 ! +--H017
+ ! ! +-15
+ ! ! +--H027
+ ! !
+ ! ! +-----------H018
+ ! +-------------34
+ ! ! +--------H028
+ ! +-13
+ ! ! +-----H001
+ ! +-11
+ ! ! +--H015
+ ! +--9
+ ! +--H020
+ !
+ +-----------------------------------------------H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 27 no ..... .....
+ 27 H030 yes ..... ...1.
+ 27 10 no ..... .....
+ 10 H006 yes .0... .....
+ 10 1 no ..... .....
+ 1 22 yes ...1. .....
+ 22 H035 yes ..... ....0
+ 22 17 no ..... .....
+ 17 H007 no ..... .....
+ 17 6 yes ..1.. .....
+ 6 H023 no ..... .....
+ 6 8 no ..... .....
+ 8 29 yes ..... 0....
+ 29 H012 no ..... .....
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+ 16 26 yes ..... ..1..
+ 26 H021 yes 0...1 .....
+ 26 H009 maybe ....0 .....
+ 16 H002 maybe ....1 .....
+ 8 H026 yes 0.... .....
+ 1 25 yes 0.... .....
+ 25 H025 no ..... .....
+ 25 2 yes ....1 .....
+ 2 H004 no ..... .....
+ 2 19 yes ..... 0....
+ 19 30 no ..... .....
+ 30 H005 yes ..... ....0
+ 30 H008 no ..... .....
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+ 14 H024 yes ..... ...1.
+ 14 7 no ..... .....
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+ 7 28 yes ..... ..1..
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+ 3 23 yes ..... ....0
+ 23 H013 no ..... .....
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+ 13 11 no ..... .....
+ 11 H001 no ..... .....
+ 11 9 no ..... .....
+ 9 H015 yes ..... ...0.
+ 9 H020 yes ..... ....0
+ 3 H019 no ..... .....
+
+
+
+
+
+ +-----------------------------------------------------------------------------------------------------H006
+ !
+ ! +--------------------H030
+ ! !
+ ! +----------------------------------------------------------------------------27 +-----------------H007
+ ! ! ! !
+-10 ! +-17 +--------------H035
+ ! ! ! !
+ ! ! +-22 +-----------H023
+ ! ! ! !
+ ! ! +--6 +-----H009
+ ! ! ! +-16
+ +--1 ! ! ! +--H012
+ ! +--8 +-29
+ ! ! +--H002
+ ! !
+ ! +--------H026
+ !
+ ! +--------------------------------------------------------------------------H025
+ ! !
+ +----------------------25 +-----------------------------------------------------------------------H004
+ ! !
+ +--2 +--------------------------------------------------------------------H008
+ ! !
+ +-19 +-----------------------------------------------------------------H024
+ ! !
+ ! ! +--------------------------------------------------------------H005
+ +-14 !
+ ! ! +--H021
+ ! ! +-26
+ ! ! +----------------------------------------------------24 +--H032
+ +-30 ! !
+ ! ! +-----H016
+ ! !
+ ! ! +--------------------------------------------------H031
+ ! ! !
+ +--7 ! +--------------------------------------------H013
+ ! ! !
+ ! ! +-23 +-----------------------------------------H022
+ ! ! ! ! !
+ ! ! ! +-32 +--------------------------------------H034
+ ! ! ! ! !
+ ! ! ! +--4 +-----------------------------------H033
+ +-------28 ! ! !
+ ! ! +-18 +--------------------------------H010
+ ! ! ! !
+ ! ! ! ! +-----H017
+ ! ! +-12 +----------------------15
+ ! ! ! ! ! +--H014
+ ! ! ! ! +-33
+ ! ! ! ! +--H027
+ ! ! +--5
+ ! ! ! +--H011
+ +--3 ! +----------------31
+ ! ! ! +--H003
+ ! ! !
+ ! +-------21 +--H018
+ ! ! +----------34
+ ! ! ! +--H029
+ ! +----20
+ ! ! +--------H028
+ ! +----13
+ ! ! +-----H001
+ ! +-11
+ ! ! +--H015
+ ! +--9
+ ! +--H020
+ !
+ +-----------------------------------------------H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 10 no ..... .....
+ 10 H006 yes .0... .....
+ 10 1 no ..... .....
+ 1 27 no ..... .....
+ 27 H030 yes ..... ...1.
+ 27 17 yes ...1. .....
+ 17 H007 no ..... .....
+ 17 22 no ..... .....
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+ 6 H023 no ..... .....
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+ 16 29 no ..... .....
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+ 14 30 no ..... .....
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+ 3 23 yes ..... ....0
+ 23 H013 no ..... .....
+ 23 32 yes ..... 1....
+ 32 H022 no ..... .....
+ 32 4 yes ....0 .....
+ 4 H034 no ..... .....
+ 4 18 yes ...1. .....
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+ 12 H010 no ..... .....
+ 12 5 yes ..... ....1
+ 5 15 yes ..1.. .....
+ 15 H017 no ..... .....
+ 15 33 no ..... .....
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+ 5 21 no ..... .....
+ 21 31 no ..... .....
+ 31 H011 no ..... .....
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+ 20 34 no ..... .....
+ 34 H018 no ..... .....
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+ 20 13 yes .0... .....
+ 13 H028 yes ..... ..0..
+ 13 11 no ..... .....
+ 11 H001 no ..... .....
+ 11 9 no ..... .....
+ 9 H015 yes ..... ...0.
+ 9 H020 yes ..... ....0
+ 3 H019 no ..... .....
+
+
+
+
+
+ +-----------------------------------------------------------------------------------------------------H006
+ !
+ ! +--------------------H030
+ ! !
+ ! +----------------------------------------------------------------------------27 +-----------------H007
+ ! ! ! !
+-10 ! +-17 +--------------H035
+ ! ! ! !
+ ! ! +-22 +-----------H023
+ ! ! ! !
+ ! ! +--6 +-----H009
+ ! ! ! +-16
+ +--1 ! ! ! +--H012
+ ! +--8 +-29
+ ! ! +--H002
+ ! !
+ ! +--------H026
+ !
+ ! +--------------------------------------------------------------------------H025
+ ! !
+ +----------------------25 +-----------------------------------------------------------------------H004
+ ! !
+ +--2 +--------------------------------------------------------------------H008
+ ! !
+ +-19 +-----------------------------------------------------------------H024
+ ! !
+ ! ! +--------------------------------------------------------------H005
+ +-14 !
+ ! ! +--H021
+ ! ! +-26
+ ! ! +----------------------------------------------------24 +--H032
+ +-30 ! !
+ ! ! +-----H016
+ ! !
+ ! ! +--------------------------------------------------H031
+ ! ! !
+ +--7 ! +--------------------------------------------H013
+ ! ! !
+ ! ! +-23 +-----------------------------------------H022
+ ! ! ! ! !
+ ! ! ! +-32 +--------------------------------------H034
+ ! ! ! ! !
+ ! ! ! +--4 +-----------------------------------H033
+ +-------28 ! ! !
+ ! ! +-18 +--------------------------------H010
+ ! ! ! !
+ ! ! ! ! +-----H017
+ ! ! +-12 +----------------------15
+ ! ! ! ! ! +--H014
+ ! ! ! ! +-33
+ ! ! ! ! +--H027
+ ! ! +--5
+ ! ! ! +--H011
+ +--3 ! +----------------31
+ ! ! ! +--H003
+ ! +-------21
+ ! ! +--------------H029
+ ! +----20
+ ! ! +-----------H018
+ ! +-34
+ ! ! +--------H028
+ ! +-13
+ ! ! +-----H001
+ ! +-11
+ ! ! +--H015
+ ! +--9
+ ! +--H020
+ !
+ +-----------------------------------------------H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 10 no ..... .....
+ 10 H006 yes .0... .....
+ 10 1 no ..... .....
+ 1 27 no ..... .....
+ 27 H030 yes ..... ...1.
+ 27 17 yes ...1. .....
+ 17 H007 no ..... .....
+ 17 22 no ..... .....
+ 22 H035 yes ..... ....0
+ 22 6 yes ..1.. .....
+ 6 H023 no ..... .....
+ 6 8 no ..... .....
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+ 16 H009 yes ..... ..1..
+ 16 29 no ..... .....
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+ 29 H002 yes ....1 .....
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+ 1 25 yes 0.... .....
+ 25 H025 no ..... .....
+ 25 2 yes ....1 .....
+ 2 H004 no ..... .....
+ 2 19 yes ..... 0....
+ 19 H008 no ..... .....
+ 19 14 no ..... .....
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+ 14 30 no ..... .....
+ 30 H005 yes ..... ....0
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+ 26 H032 yes ..... .1...
+ 24 H016 no ..... .....
+ 7 28 yes ..... ..1..
+ 28 H031 no ..... .....
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+ 3 23 yes ..... ....0
+ 23 H013 no ..... .....
+ 23 32 yes ..... 1....
+ 32 H022 no ..... .....
+ 32 4 yes ....0 .....
+ 4 H034 no ..... .....
+ 4 18 yes ...1. .....
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+ 18 12 yes 1.... .....
+ 12 H010 no ..... .....
+ 12 5 yes ..... ....1
+ 5 15 yes ..1.. .....
+ 15 H017 no ..... .....
+ 15 33 no ..... .....
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+ 33 H027 yes ..... 0...0
+ 5 21 no ..... .....
+ 21 31 no ..... .....
+ 31 H011 no ..... .....
+ 31 H003 yes ....1 .....
+ 21 20 yes ...0. .....
+ 20 H029 yes 0.... .....
+ 20 34 no ..... .....
+ 34 H018 no ..... .....
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+ 13 H028 yes ..... ..0..
+ 13 11 no ..... .....
+ 11 H001 no ..... .....
+ 11 9 no ..... .....
+ 9 H015 yes ..... ...0.
+ 9 H020 yes ..... ....0
+ 3 H019 no ..... .....
+
+
+
+
+
+ +-----------------------------------------------------------------------------------------------------H006
+ !
+ ! +--------------------H030
+ ! !
+ ! +----------------------------------------------------------------------------27 +-----------------H007
+ ! ! ! !
+-10 ! +-17 +--------------H035
+ ! ! ! !
+ ! ! +-22 +-----------H023
+ ! ! ! !
+ ! ! +--6 +-----H009
+ ! ! ! +-16
+ +--1 ! ! ! +--H012
+ ! +--8 +-29
+ ! ! +--H002
+ ! !
+ ! +--------H026
+ !
+ ! +--------------------------------------------------------------------------H025
+ ! !
+ +----------------------25 +-----------------------------------------------------------------------H004
+ ! !
+ +--2 +--------------------------------------------------------------------H008
+ ! !
+ +-19 +-----------------------------------------------------------------H024
+ ! !
+ ! ! +--------------------------------------------------------------H005
+ +-14 !
+ ! ! +--H021
+ ! ! +-26
+ ! ! +----------------------------------------------------24 +--H032
+ +-30 ! !
+ ! ! +-----H016
+ ! !
+ ! ! +--------------------------------------------------H031
+ ! ! !
+ +--7 ! +--------------------------------------------H013
+ ! ! !
+ ! ! +-23 +-----------------------------------------H022
+ ! ! ! ! !
+ ! ! ! +-32 +--------------------------------------H034
+ ! ! ! ! !
+ ! ! ! +--4 +-----------------------------------H033
+ +-------28 ! ! !
+ ! ! +-18 +--------------------------------H010
+ ! ! ! !
+ ! ! ! ! +-----H017
+ ! ! +-12 +----------------------15
+ ! ! ! ! ! +--H014
+ ! ! ! ! +-33
+ ! ! ! ! +--H027
+ ! ! +--5
+ ! ! ! +--H011
+ +--3 ! +----------------31
+ ! ! ! +--H003
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+ ! ! +--------------H018
+ ! +----34
+ ! ! +-----------H029
+ ! +-20
+ ! ! +--------H028
+ ! +-13
+ ! ! +-----H001
+ ! +-11
+ ! ! +--H015
+ ! +--9
+ ! +--H020
+ !
+ +-----------------------------------------------H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 10 no ..... .....
+ 10 H006 yes .0... .....
+ 10 1 no ..... .....
+ 1 27 no ..... .....
+ 27 H030 yes ..... ...1.
+ 27 17 yes ...1. .....
+ 17 H007 no ..... .....
+ 17 22 no ..... .....
+ 22 H035 yes ..... ....0
+ 22 6 yes ..1.. .....
+ 6 H023 no ..... .....
+ 6 8 no ..... .....
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+ 16 H009 yes ..... ..1..
+ 16 29 no ..... .....
+ 29 H012 no ..... .....
+ 29 H002 yes ....1 .....
+ 8 H026 yes 0.... .....
+ 1 25 yes 0.... .....
+ 25 H025 no ..... .....
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+ 2 H004 no ..... .....
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+ 19 H008 no ..... .....
+ 19 14 no ..... .....
+ 14 H024 yes ..... ...1.
+ 14 30 no ..... .....
+ 30 H005 yes ..... ....0
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+ 24 26 no ..... .....
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+ 7 28 yes ..... ..1..
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+ 3 23 yes ..... ....0
+ 23 H013 no ..... .....
+ 23 32 yes ..... 1....
+ 32 H022 no ..... .....
+ 32 4 yes ....0 .....
+ 4 H034 no ..... .....
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+ 5 15 yes ..1.. .....
+ 15 H017 no ..... .....
+ 15 33 no ..... .....
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+ 33 H027 yes ..... 0...0
+ 5 21 no ..... .....
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+ 34 H018 no ..... .....
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+ 13 H028 yes ..... ..0..
+ 13 11 no ..... .....
+ 11 H001 no ..... .....
+ 11 9 no ..... .....
+ 9 H015 yes ..... ...0.
+ 9 H020 yes ..... ....0
+ 3 H019 no ..... .....
+
+
+
+
+
+ +-----------------------------------------------------------------------------------------------------H006
+ !
+ ! +--------------------H030
+ ! !
+ ! +----------------------------------------------------------------------------27 +-----------------H007
+ ! ! ! !
+-10 ! +-17 +--------------H035
+ ! ! ! !
+ ! ! +-22 +-----------H023
+ ! ! ! !
+ ! ! +--6 +-----H009
+ ! ! ! +-16
+ +--1 ! ! ! +--H012
+ ! +--8 +-29
+ ! ! +--H002
+ ! !
+ ! +--------H026
+ !
+ ! +--------------------------------------------------------------------------H025
+ ! !
+ +----------------------25 +-----------------------------------------------------------------------H004
+ ! !
+ +--2 +--------------------------------------------------------------------H008
+ ! !
+ +-19 +-----------------------------------------------------------------H024
+ ! !
+ ! ! +--------------------------------------------------------------H005
+ +-14 !
+ ! ! +--H021
+ ! ! +-26
+ ! ! +----------------------------------------------------24 +--H032
+ +-30 ! !
+ ! ! +-----H016
+ ! !
+ ! ! +--------------------------------------------------H031
+ ! ! !
+ +--7 ! +--------------------------------------------H013
+ ! ! !
+ ! ! +-23 +-----------------------------------------H022
+ ! ! ! ! !
+ ! ! ! +-32 +--------------------------------------H034
+ ! ! ! ! !
+ ! ! ! +--4 +-----------------------------------H029
+ +-------28 ! ! !
+ ! ! +-20 +--------------------------------H033
+ ! ! ! !
+ ! ! +-18 +-----------------------------H010
+ ! ! ! !
+ ! ! ! ! +-----H017
+ ! ! +-12 +-------------------15
+ ! ! ! ! ! +--H014
+ ! ! ! ! +-33
+ ! ! ! ! +--H027
+ +--3 +--5
+ ! ! +--H011
+ ! ! +-------------31
+ ! ! ! +--H003
+ ! +-------21
+ ! ! +-----------H018
+ ! +----34
+ ! ! +--------H028
+ ! +-13
+ ! ! +-----H001
+ ! +-11
+ ! ! +--H015
+ ! +--9
+ ! +--H020
+ !
+ +-----------------------------------------------H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 10 no ..... .....
+ 10 H006 yes .0... .....
+ 10 1 no ..... .....
+ 1 27 no ..... .....
+ 27 H030 yes ..... ...1.
+ 27 17 yes ...1. .....
+ 17 H007 no ..... .....
+ 17 22 no ..... .....
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+ 22 6 yes ..1.. .....
+ 6 H023 no ..... .....
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+ 16 H009 yes ..... ..1..
+ 16 29 no ..... .....
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+ 2 H004 no ..... .....
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+ 19 H008 no ..... .....
+ 19 14 no ..... .....
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+ 14 30 no ..... .....
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+ 3 23 yes ..... ....0
+ 23 H013 no ..... .....
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+ 34 H018 no ..... .....
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+ 13 H028 yes ..... ..0..
+ 13 11 no ..... .....
+ 11 H001 no ..... .....
+ 11 9 no ..... .....
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+ 9 H020 yes ..... ....0
+ 3 H019 no ..... .....
+
+
+
+
+
+ +--H030
+ +-------------------------------------------------------------------------------------------------27
+ ! +--H006
+ !
+ ! +--H035
+ ! +----------------22
+ ! ! +--H007
+ ! !
+-10 ! +--H021
+ ! ! +----26
+ ! +-------------------------------------------------------------------------17 ! +--H009
+ ! ! ! +-16
+ ! ! ! ! ! +--H012
+ ! ! ! +--8 +----29
+ ! ! ! ! ! +--H002
+ ! ! +-----6 !
+ +-----1 ! +-----------H023
+ ! !
+ ! +--------------H026
+ !
+ ! +-----------------------------------------------------------------------H025
+ ! !
+ ! ! +--------------------------------------------------------------------H004
+ +----------------------25 !
+ ! ! +--H005
+ ! ! +-------------------------------------------------------------30
+ +--2 ! +--H008
+ ! !
+ ! ! +-----H031
+ ! ! +----------------------------------------------------28
+ +-19 ! ! +--H032
+ ! ! +-24
+ ! ! +--H016
+ ! !
+ ! ! +--------------------------------------------------H024
+ ! ! !
+ +-----7 ! +--------------------------------------------H013
+ ! ! !
+ ! ! +-23 +-----------------------------------------H022
+ ! ! ! ! !
+ ! ! ! +-32 +--H029
+ ! ! ! ! +----------------------------------20
+ ! ! ! ! ! +--H034
+ +-------14 ! +--4
+ ! ! ! +--------------------------------H033
+ ! ! ! !
+ ! ! +----18 +-----------------------------H010
+ ! ! ! !
+ ! ! ! ! +--H011
+ ! ! +-12 +----------------------31
+ ! ! ! ! +--H003
+ ! ! ! !
+ ! ! ! ! +-----H014
+ +--3 +-21 +-------------33
+ ! ! ! ! +--H017
+ ! ! ! +-15
+ ! ! ! +--H027
+ ! +-----5
+ ! ! +-----------H018
+ ! ! !
+ ! ! ! +--H028
+ ! +-------34 +-13
+ ! ! +-11 +--H001
+ ! ! ! !
+ ! +--9 +-----H015
+ ! !
+ ! +--------H020
+ !
+ +-----------------------------------------------H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 10 no ..... .....
+ 10 27 no ..... .....
+ 27 H030 yes ..... ...1.
+ 27 H006 yes .0... .....
+ 10 1 no ..... .....
+ 1 17 yes ...1. .....
+ 17 22 no ..... .....
+ 22 H035 yes ..... ....0
+ 22 H007 no ..... .....
+ 17 6 yes ..1.. .....
+ 6 8 no ..... .....
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+ 16 29 no ..... .....
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+ 8 H023 no ..... .....
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+ 1 25 yes 0.... .....
+ 25 H025 no ..... .....
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+ 2 19 yes ..... 0....
+ 19 30 no ..... .....
+ 30 H005 yes ..... ....0
+ 30 H008 no ..... .....
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+ 24 H032 yes ..... .1...
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+ 7 14 yes ..... ...1.
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+ 14 3 yes ..... .11..
+ 3 23 yes ..... ....0
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+ 4 20 no ..... .....
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+ 18 12 yes 1.... .....
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+ 34 9 yes .0... .....
+ 9 11 no ..... .....
+ 11 13 no ..... .....
+ 13 H028 yes ..... ..0..
+ 13 H001 no ..... .....
+ 11 H015 yes ..... ...0.
+ 9 H020 yes ..... ....0
+ 3 H019 no ..... .....
+
+
+
+
+
+ +--H030
+ +-------------------------------------------------------------------------------------------------27
+ ! +--H006
+ !
+ ! +--H035
+ ! +----------------22
+ ! ! +--H007
+ ! !
+-10 ! +--H021
+ ! ! +----26
+ ! +-------------------------------------------------------------------------17 ! +--H009
+ ! ! ! +-16
+ ! ! ! ! ! +--H012
+ ! ! ! +--8 +----29
+ ! ! ! ! ! +--H002
+ ! ! +-----6 !
+ +-----1 ! +-----------H023
+ ! !
+ ! +--------------H026
+ !
+ ! +-----------------------------------------------------------------------H025
+ ! !
+ ! ! +--------------------------------------------------------------------H004
+ +----------------------25 !
+ ! ! +--H005
+ ! ! +-------------------------------------------------------------30
+ +--2 ! +--H008
+ ! !
+ ! ! +-----H031
+ ! ! +----------------------------------------------------28
+ +-19 ! ! +--H032
+ ! ! +-24
+ ! ! +--H016
+ ! !
+ ! ! +--------------------------------------------------H024
+ ! ! !
+ +-----7 ! +--------------------------------------------H013
+ ! ! !
+ ! ! +-23 +-----------------------------------------H022
+ ! ! ! ! !
+ ! ! ! +-32 +--H029
+ ! ! ! ! +----------------------------------20
+ ! ! ! ! ! +--H034
+ +-------14 ! +--4
+ ! ! ! +--------------------------------H033
+ ! ! ! !
+ ! ! +----18 +-----------------------------H010
+ ! ! ! !
+ ! ! ! ! +--H011
+ ! ! +-12 +----------------------31
+ ! ! ! ! +--H003
+ ! ! ! !
+ ! ! +-21 +-----H014
+ +--3 ! +-------------33
+ ! ! ! ! +--H017
+ ! ! ! +-15
+ ! +-----5 +--H027
+ ! !
+ ! ! +-----------H018
+ ! ! !
+ ! +-------34 +--H028
+ ! ! +----13
+ ! ! ! +--H001
+ ! +-11
+ ! ! +--H015
+ ! +-----9
+ ! +--H020
+ !
+ +-----------------------------------------------H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 10 no ..... .....
+ 10 27 no ..... .....
+ 27 H030 yes ..... ...1.
+ 27 H006 yes .0... .....
+ 10 1 no ..... .....
+ 1 17 yes ...1. .....
+ 17 22 no ..... .....
+ 22 H035 yes ..... ....0
+ 22 H007 no ..... .....
+ 17 6 yes ..1.. .....
+ 6 8 no ..... .....
+ 8 16 yes ..... 0....
+ 16 26 yes ..... ..1..
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+ 26 H009 no ..... .....
+ 16 29 no ..... .....
+ 29 H012 no ..... .....
+ 29 H002 yes ....1 .....
+ 8 H023 no ..... .....
+ 6 H026 yes 0.... .....
+ 1 25 yes 0.... .....
+ 25 H025 no ..... .....
+ 25 2 yes ....1 .....
+ 2 H004 no ..... .....
+ 2 19 yes ..... 0....
+ 19 30 no ..... .....
+ 30 H005 yes ..... ....0
+ 30 H008 no ..... .....
+ 19 7 no ..... .....
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+ 28 24 yes ...1. .....
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+ 14 3 yes ..... .11..
+ 3 23 yes ..... ....0
+ 23 H013 no ..... .....
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+ 4 20 no ..... .....
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+ 4 18 yes ...1. .....
+ 18 H033 no ..... .....
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+ 12 H010 no ..... .....
+ 12 21 yes ..... ....1
+ 21 31 no ..... .....
+ 31 H011 no ..... .....
+ 31 H003 yes ....1 .....
+ 21 5 no ..... .....
+ 5 33 yes ..1.. .....
+ 33 H014 yes 0.... .....
+ 33 15 no ..... .....
+ 15 H017 no ..... .....
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+ 5 34 yes ...0. .....
+ 34 H018 no ..... .....
+ 34 11 yes .0... .....
+ 11 13 no ..... .....
+ 13 H028 yes ..... ..0..
+ 13 H001 no ..... .....
+ 11 9 no ..... .....
+ 9 H015 yes ..... ...0.
+ 9 H020 yes ..... ....0
+ 3 H019 no ..... .....
+
+
+
+
+
+ +-----------------------------------------------------------------------------------------------------H030
+ !
+ ! +--------------------------------------------------------------------------------------------------H006
+ ! !
+-27 ! +--H035
+ ! ! +----------------22
+ ! ! ! +--H007
+ ! ! !
+ ! ! ! +--------H012
+ +-10 ! !
+ ! +-------------------------------------------------------------------------17 +-29 +--H021
+ ! ! ! ! ! +-26
+ ! ! ! ! +-16 +--H009
+ ! ! ! +--8 !
+ ! ! ! ! ! +-----H002
+ ! ! +-----6 !
+ +--1 ! +-----------H023
+ ! !
+ ! +--------------H026
+ !
+ ! +-----------------------------------------------------------------------H025
+ ! !
+ +----------------------25 +--------------------------------------------------------------------H004
+ ! !
+ ! ! +--H032
+ +--2 +-------------------------------------------------------------24
+ ! ! +--H016
+ ! !
+ ! ! +--H005
+ +--7 +-------------------------------------------------------30
+ ! ! +--H008
+ ! !
+ ! ! +-----------------------------------------------------H024
+ +----19 !
+ ! ! +--------------------------------------------------H031
+ ! ! !
+ ! ! ! +--------------------------------------------H013
+ +----14 ! !
+ ! ! +-23 +-----------------------------------------H022
+ ! ! ! ! !
+ ! ! ! +-32 +--------------------------------------H029
+ ! ! ! ! !
+ ! ! ! +-20 +-----------------------------------H034
+ +-28 ! ! !
+ ! ! +--4 +--------------------------------H033
+ ! ! ! !
+ ! ! ! ! +-----------------------------H010
+ ! ! +-18 !
+ ! ! ! ! +-----------H011
+ ! ! ! ! +-------------31
+ ! ! +-12 ! ! +--------H003
+ ! ! ! ! +-21
+ ! ! ! ! ! +-----H014
+ +--3 ! ! +-33
+ ! +--5 ! +--H017
+ ! ! +-15
+ ! ! +--H027
+ ! !
+ ! ! +-----------H018
+ ! +-------------34
+ ! ! +--------H028
+ ! +-13
+ ! ! +-----H001
+ ! +-11
+ ! ! +--H015
+ ! +--9
+ ! +--H020
+ !
+ +-----------------------------------------------H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 27 no ..... .....
+ 27 H030 yes ..... ...1.
+ 27 10 no ..... .....
+ 10 H006 yes .0... .....
+ 10 1 no ..... .....
+ 1 17 yes ...1. .....
+ 17 22 no ..... .....
+ 22 H035 yes ..... ....0
+ 22 H007 no ..... .....
+ 17 6 yes ..1.. .....
+ 6 8 no ..... .....
+ 8 29 yes ..... 0....
+ 29 H012 no ..... .....
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+ 26 H021 yes 0...1 .....
+ 26 H009 maybe ....0 .....
+ 16 H002 maybe ....1 .....
+ 8 H023 no ..... .....
+ 6 H026 yes 0.... .....
+ 1 25 yes 0.... .....
+ 25 H025 no ..... .....
+ 25 2 yes ....1 .....
+ 2 H004 no ..... .....
+ 2 7 yes ..... 0....
+ 7 24 yes ...1. .....
+ 24 H032 yes ..... .1...
+ 24 H016 no ..... .....
+ 7 19 no ..... .....
+ 19 30 no ..... .....
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+ 3 23 yes ..... ....0
+ 23 H013 no ..... .....
+ 23 32 yes ..... 1....
+ 32 H022 no ..... .....
+ 32 20 yes ....0 .....
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+ 20 4 no ..... .....
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+ 4 18 yes ...1. .....
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+ 12 H010 no ..... .....
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+ 5 31 no ..... .....
+ 31 H011 no ..... .....
+ 31 21 no ..... .....
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+ 21 33 yes ..1.. .....
+ 33 H014 yes 0.... .....
+ 33 15 no ..... .....
+ 15 H017 no ..... .....
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+ 5 34 yes ...0. .....
+ 34 H018 no ..... .....
+ 34 13 yes .0... .....
+ 13 H028 yes ..... ..0..
+ 13 11 no ..... .....
+ 11 H001 no ..... .....
+ 11 9 no ..... .....
+ 9 H015 yes ..... ...0.
+ 9 H020 yes ..... ....0
+ 3 H019 no ..... .....
+
+
+
+
+
+ +--H030
+ +-------------------------------------------------------------------------------------------------27
+ ! +--H006
+ !
+ ! +--H035
+ ! +----------------22
+ ! ! +--H007
+ ! !
+-10 ! +--------H012
+ ! +-------------------------------------------------------------------------17 !
+ ! ! ! +----29 +--H021
+ ! ! ! ! ! +-26
+ ! ! ! ! +-16 +--H009
+ ! ! +-----8 !
+ ! ! ! +-----H002
+ +-----1 !
+ ! ! +--H023
+ ! +-----------6
+ ! +--H026
+ !
+ ! +-----------------------------------------------------------------------H025
+ ! !
+ +----------------------25 +--------------------------------------------------------------------H004
+ ! !
+ ! ! +--H032
+ +--2 +-------------------------------------------------------------24
+ ! ! +--H016
+ ! !
+ ! ! +--H005
+ +--7 +-------------------------------------------------------30
+ ! ! +--H008
+ ! !
+ ! ! +-----------------------------------------------------H024
+ +----19 !
+ ! ! +--------------------------------------------------H031
+ ! ! !
+ ! ! ! +--------------------------------------------H013
+ +----14 ! !
+ ! ! +-23 +-----------------------------------------H022
+ ! ! ! ! !
+ ! ! ! +-32 +--------------------------------------H029
+ ! ! ! ! !
+ ! ! ! +-20 +-----------------------------------H034
+ +-28 ! ! !
+ ! ! +--4 +--------------------------------H033
+ ! ! ! !
+ ! ! +-18 +-----------------------------H010
+ ! ! ! !
+ ! ! ! ! +-----H014
+ ! ! +-12 +-------------------33
+ ! ! ! ! ! +--H017
+ ! ! ! ! +-15
+ ! ! ! ! +--H027
+ +--3 +--5
+ ! ! +--H011
+ ! ! +-------------31
+ ! ! ! +--H003
+ ! +-------21
+ ! ! +-----------H018
+ ! ! !
+ ! +----34 +--------H015
+ ! ! !
+ ! +--9 +--H028
+ ! ! +-13
+ ! +-11 +--H001
+ ! !
+ ! +-----H020
+ !
+ +-----------------------------------------------H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 10 no ..... .....
+ 10 27 no ..... .....
+ 27 H030 yes ..... ...1.
+ 27 H006 yes .0... .....
+ 10 1 no ..... .....
+ 1 17 yes ...1. .....
+ 17 22 no ..... .....
+ 22 H035 yes ..... ....0
+ 22 H007 no ..... .....
+ 17 8 yes ..1.. .....
+ 8 29 yes ..... 0....
+ 29 H012 no ..... .....
+ 29 16 maybe ....? .....
+ 16 26 yes ..... ..1..
+ 26 H021 yes 0...1 .....
+ 26 H009 maybe ....0 .....
+ 16 H002 maybe ....1 .....
+ 8 6 no ..... .....
+ 6 H023 no ..... .....
+ 6 H026 yes 0.... .....
+ 1 25 yes 0.... .....
+ 25 H025 no ..... .....
+ 25 2 yes ....1 .....
+ 2 H004 no ..... .....
+ 2 7 yes ..... 0....
+ 7 24 yes ...1. .....
+ 24 H032 yes ..... .1...
+ 24 H016 no ..... .....
+ 7 19 no ..... .....
+ 19 30 no ..... .....
+ 30 H005 yes ..... ....0
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+ 19 14 maybe ..... ...?.
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+ 14 28 yes ..... ..1..
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+ 28 3 yes ..... .1.1.
+ 3 23 yes ..... ....0
+ 23 H013 no ..... .....
+ 23 32 yes ..... 1....
+ 32 H022 no ..... .....
+ 32 20 yes ....0 .....
+ 20 H029 yes ..... ....1
+ 20 4 no ..... .....
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+ 4 18 yes ...1. .....
+ 18 H033 no ..... .....
+ 18 12 yes 1.... .....
+ 12 H010 no ..... .....
+ 12 5 yes ..... ....1
+ 5 33 yes ..1.. .....
+ 33 H014 yes 0.... .....
+ 33 15 no ..... .....
+ 15 H017 no ..... .....
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+ 5 21 no ..... .....
+ 21 31 no ..... .....
+ 31 H011 no ..... .....
+ 31 H003 yes ....1 .....
+ 21 34 yes ...0. .....
+ 34 H018 no ..... .....
+ 34 9 yes .0... .....
+ 9 H015 yes ..... ...0.
+ 9 11 no ..... .....
+ 11 13 no ..... .....
+ 13 H028 yes ..... ..0..
+ 13 H001 no ..... .....
+ 11 H020 yes ..... ....0
+ 3 H019 no ..... .....
+
+
+
+
+
+ +--H030
+ +-------------------------------------------------------------------------------------------------27
+ ! +--H006
+ !
+ ! +--H035
+ ! +----------------22
+ ! ! +--H007
+ ! !
+-10 ! +--------H012
+ ! +-------------------------------------------------------------------------17 !
+ ! ! ! +----29 +--H021
+ ! ! ! ! ! +-26
+ ! ! ! ! +-16 +--H009
+ ! ! +-----8 !
+ ! ! ! +-----H002
+ +-----1 !
+ ! ! +--H023
+ ! +-----------6
+ ! +--H026
+ !
+ ! +-----------------------------------------------------------------------H025
+ ! !
+ +----------------------25 +--------------------------------------------------------------------H004
+ ! !
+ ! ! +--H032
+ +--2 +-------------------------------------------------------------24
+ ! ! +--H016
+ ! !
+ ! ! +--H005
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+ ! ! +--H008
+ ! !
+ ! ! +-----------------------------------------------------H024
+ +----19 !
+ ! ! +--------------------------------------------------H031
+ ! ! !
+ ! ! ! +--------------------------------------------H013
+ +----14 ! !
+ ! ! +-23 +-----------------------------------------H022
+ ! ! ! ! !
+ ! ! ! +-32 +--------------------------------------H029
+ ! ! ! ! !
+ ! ! ! +-20 +-----------------------------------H034
+ +-28 ! ! !
+ ! ! +--4 +--------------------------------H033
+ ! ! ! !
+ ! ! +-18 +-----------------------------H010
+ ! ! ! !
+ ! ! ! ! +-----H014
+ ! ! +-12 +-------------------33
+ ! ! ! ! ! +--H017
+ ! ! ! ! +-15
+ ! ! ! ! +--H027
+ +--3 +--5
+ ! ! +--H011
+ ! ! +-------------31
+ ! ! ! +--H003
+ ! ! !
+ ! +-------21 +-----------H018
+ ! ! !
+ ! ! ! +--H028
+ ! +----34 +-13
+ ! ! +-11 +--H001
+ ! ! ! !
+ ! +--9 +-----H015
+ ! !
+ ! +--------H020
+ !
+ +-----------------------------------------------H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 10 no ..... .....
+ 10 27 no ..... .....
+ 27 H030 yes ..... ...1.
+ 27 H006 yes .0... .....
+ 10 1 no ..... .....
+ 1 17 yes ...1. .....
+ 17 22 no ..... .....
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+ 9 11 no ..... .....
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+ 9 H020 yes ..... ....0
+ 3 H019 no ..... .....
+
+
+
+
+
+ +--H030
+ +-------------------------------------------------------------------------------------------------27
+ ! +--H006
+ !
+ ! +--H035
+ ! +----------------22
+ ! ! +--H007
+ ! !
+-10 ! +--------H012
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+ ! ! ! +----29 +--H021
+ ! ! ! ! ! +-26
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+ ! ! !
+ +-----1 ! +--H023
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+ ! +--H026
+ !
+ ! +-----------------------------------------------------------------------H025
+ ! !
+ ! ! +--------------------------------------------------------------------H004
+ ! ! !
+ +----------------------25 ! +--H005
+ ! ! +-30
+ ! ! +----19 +--H008
+ ! ! ! !
+ +--2 +----------------------------------------------------14 +-----H024
+ ! ! !
+ ! ! ! +--H032
+ ! ! +-------24
+ ! ! +--H016
+ ! !
+ ! ! +--------------------------------------------------H031
+ +--7 !
+ ! ! +--------------------------------------------H013
+ ! ! !
+ ! ! +-23 +-----------------------------------------H022
+ ! ! ! ! !
+ ! ! ! +-32 +--------------------------------------H029
+ ! ! ! ! !
+ ! ! ! +-20 +-----------------------------------H034
+ +-------------28 ! ! !
+ ! ! +--4 +--------------------------------H033
+ ! ! ! !
+ ! ! +-18 +-----------------------------H010
+ ! ! ! !
+ ! ! ! ! +-----H014
+ ! ! +-12 +-------------------33
+ ! ! ! ! ! +--H017
+ ! ! ! ! +-15
+ ! ! ! ! +--H027
+ +--3 +--5
+ ! ! +--H011
+ ! ! +-------------31
+ ! ! ! +--H003
+ ! +-------21
+ ! ! +-----------H018
+ ! ! !
+ ! +----34 +--H028
+ ! ! +----13
+ ! ! ! +--H001
+ ! +-11
+ ! ! +--H015
+ ! +-----9
+ ! +--H020
+ !
+ +-----------------------------------------------H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 10 no ..... .....
+ 10 27 no ..... .....
+ 27 H030 yes ..... ...1.
+ 27 H006 yes .0... .....
+ 10 1 no ..... .....
+ 1 17 yes ...1. .....
+ 17 22 no ..... .....
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+ 8 29 yes ..... 0....
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+ 25 H025 no ..... .....
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+ 2 7 yes ..... 0....
+ 7 14 no ..... .....
+ 14 19 no ..... .....
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+ 3 23 yes ..... ....0
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+ 21 31 no ..... .....
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+ 13 H001 no ..... .....
+ 11 9 no ..... .....
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+ 9 H020 yes ..... ....0
+ 3 H019 no ..... .....
+
+
+
+
+
+ +--H030
+ +-------------------------------------------------------------------------------------------------27
+ ! +--H006
+ !
+ ! +--H035
+ ! +----------------22
+ ! ! +--H007
+ ! !
+-10 ! +--H021
+ ! +-------------------------------------------------------------------------17 +----26
+ ! ! ! ! +--H009
+ ! ! ! +----16
+ ! ! ! ! ! +--H012
+ ! ! ! ! +----29
+ ! ! +-----8 +--H002
+ ! ! !
+ +-----1 ! +--H023
+ ! +-----------6
+ ! +--H026
+ !
+ ! +-----------------------------------------------------------------------H025
+ ! !
+ ! ! +--------------------------------------------------------------------H004
+ ! ! !
+ +----------------------25 ! +-----H031
+ ! ! +----28
+ ! ! ! ! +--H005
+ ! ! ! +-30
+ +--2 +----------------------------------------------------19 +--H008
+ ! ! !
+ ! ! ! +--H032
+ ! ! +-------24
+ ! ! +--H016
+ ! !
+ ! ! +--------------------------------------------------H024
+ +--7 !
+ ! ! +--------------------------------------------H013
+ ! ! !
+ ! ! +-23 +-----------------------------------------H022
+ ! ! ! ! !
+ ! ! ! +-32 +--H029
+ ! ! ! ! +----------------------------------20
+ ! ! ! ! ! +--H034
+ +-------------14 ! +--4
+ ! ! ! +--------------------------------H033
+ ! ! ! !
+ ! ! +----18 +-----------------------------H010
+ ! ! ! !
+ ! ! ! ! +--H011
+ ! ! +-12 +----------------------31
+ ! ! ! ! +--H003
+ ! ! ! !
+ ! ! +-21 +-----H014
+ +--3 ! +-------------33
+ ! ! ! ! +--H017
+ ! ! ! +-15
+ ! +-----5 +--H027
+ ! !
+ ! ! +-----------H018
+ ! ! !
+ ! +-------34 +--H028
+ ! ! +----13
+ ! ! ! +--H001
+ ! +-11
+ ! ! +--H015
+ ! +-----9
+ ! +--H020
+ !
+ +-----------------------------------------------H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 10 no ..... .....
+ 10 27 no ..... .....
+ 27 H030 yes ..... ...1.
+ 27 H006 yes .0... .....
+ 10 1 no ..... .....
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+ 8 16 yes ..... 0....
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+ 11 9 no ..... .....
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+ 9 H020 yes ..... ....0
+ 3 H019 no ..... .....
+
+
+
+
+
+ +--H030
+ +-------------------------------------------------------------------------------------------------27
+ ! +--H006
+ !
+ ! +--H035
+ ! +----------------22
+ ! ! +--H007
+ ! !
+-10 ! +--H021
+ ! +-------------------------------------------------------------------------17 +----26
+ ! ! ! ! +--H009
+ ! ! ! +----16
+ ! ! ! ! ! +--H012
+ ! ! ! ! +----29
+ ! ! +-----8 +--H002
+ ! ! !
+ +-----1 ! +--H023
+ ! +-----------6
+ ! +--H026
+ !
+ ! +-----------------------------------------------------------------------H025
+ ! !
+ ! ! +--------------------------------------------------------------------H004
+ ! ! !
+ +----------------------25 ! +-----------H031
+ ! ! !
+ ! ! +----------------------------------------------------28 +--H005
+ ! ! ! ! +----30
+ +--2 ! ! ! +--H008
+ ! ! +-19
+ ! ! ! +--H032
+ ! ! +----24
+ ! ! +--H016
+ ! !
+ +--7 +--------------------------------------------------H024
+ ! !
+ ! ! +--------------------------------------------H013
+ ! ! !
+ ! ! +-23 +-----------------------------------------H022
+ ! ! ! ! !
+ ! ! ! +-32 +--H029
+ ! ! ! ! +----------------------------------20
+ ! ! ! ! ! +--H034
+ +-------------14 ! +--4
+ ! ! ! +--------------------------------H033
+ ! ! ! !
+ ! ! +----18 +-----------------------------H010
+ ! ! ! !
+ ! ! ! ! +--H011
+ ! ! +-12 +----------------------31
+ ! ! ! ! +--H003
+ ! ! ! !
+ ! ! +-21 +-----H014
+ +--3 ! +-------------33
+ ! ! ! ! +--H017
+ ! ! ! +-15
+ ! +-----5 +--H027
+ ! !
+ ! ! +-----------H018
+ ! ! !
+ ! +-------34 +--H028
+ ! ! +----13
+ ! ! ! +--H001
+ ! +-11
+ ! ! +--H015
+ ! +-----9
+ ! +--H020
+ !
+ +-----------------------------------------------H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 10 no ..... .....
+ 10 27 no ..... .....
+ 27 H030 yes ..... ...1.
+ 27 H006 yes .0... .....
+ 10 1 no ..... .....
+ 1 17 yes ...1. .....
+ 17 22 no ..... .....
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+ 8 16 yes ..... 0....
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+ 16 29 no ..... .....
+ 29 H012 no ..... .....
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+ 8 6 no ..... .....
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+ 1 25 yes 0.... .....
+ 25 H025 no ..... .....
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+ 7 28 no ..... .....
+ 28 H031 yes ..... ..1..
+ 28 19 no ..... .....
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+ 14 3 yes ..... .11..
+ 3 23 yes ..... ....0
+ 23 H013 no ..... .....
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+ 4 20 no ..... .....
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+ 21 31 no ..... .....
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+ 33 15 no ..... .....
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+ 5 34 yes ...0. .....
+ 34 H018 no ..... .....
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+ 11 13 no ..... .....
+ 13 H028 yes ..... ..0..
+ 13 H001 no ..... .....
+ 11 9 no ..... .....
+ 9 H015 yes ..... ...0.
+ 9 H020 yes ..... ....0
+ 3 H019 no ..... .....
+
+
+
+
+
+ +--H030
+ +-------------------------------------------------------------------------------------------------27
+ ! +--H006
+ !
+ ! +--H035
+ ! +----------------22
+ ! ! +--H007
+ ! !
+-10 ! +--H021
+ ! +-------------------------------------------------------------------------17 +----26
+ ! ! ! ! +--H009
+ ! ! ! +----16
+ ! ! ! ! ! +--H012
+ ! ! ! ! +----29
+ ! ! +-----8 +--H002
+ ! ! !
+ +-----1 ! +--H023
+ ! +-----------6
+ ! +--H026
+ !
+ ! +-----------------------------------------------------------------------H025
+ ! !
+ ! ! +--------------------------------------------------------------------H004
+ ! ! !
+ +----------------------25 ! +--H005
+ ! ! +-------30
+ ! ! ! +--H008
+ ! ! +----------------------------------------------------19
+ +--2 ! ! +-----H031
+ ! ! +----28
+ ! ! ! +--H032
+ ! ! +-24
+ ! ! +--H016
+ ! !
+ ! ! +--------------------------------------------------H024
+ +--7 !
+ ! ! +--------------------------------------------H013
+ ! ! !
+ ! ! +-23 +-----------------------------------------H022
+ ! ! ! ! !
+ ! ! ! +-32 +--H029
+ ! ! ! ! +----------------------------------20
+ ! ! ! ! ! +--H034
+ +-------------14 ! +--4
+ ! ! ! +--------------------------------H033
+ ! ! ! !
+ ! ! +----18 +-----------------------------H010
+ ! ! ! !
+ ! ! ! ! +--H011
+ ! ! +-12 +----------------------31
+ ! ! ! ! +--H003
+ ! ! ! !
+ ! ! +-21 +-----H014
+ +--3 ! +-------------33
+ ! ! ! ! +--H017
+ ! ! ! +-15
+ ! +-----5 +--H027
+ ! !
+ ! ! +-----------H018
+ ! ! !
+ ! +-------34 +--H028
+ ! ! +----13
+ ! ! ! +--H001
+ ! +-11
+ ! ! +--H015
+ ! +-----9
+ ! +--H020
+ !
+ +-----------------------------------------------H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 10 no ..... .....
+ 10 27 no ..... .....
+ 27 H030 yes ..... ...1.
+ 27 H006 yes .0... .....
+ 10 1 no ..... .....
+ 1 17 yes ...1. .....
+ 17 22 no ..... .....
+ 22 H035 yes ..... ....0
+ 22 H007 no ..... .....
+ 17 8 yes ..1.. .....
+ 8 16 yes ..... 0....
+ 16 26 yes ..... ..1..
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+ 26 H009 no ..... .....
+ 16 29 no ..... .....
+ 29 H012 no ..... .....
+ 29 H002 yes ....1 .....
+ 8 6 no ..... .....
+ 6 H023 no ..... .....
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+ 1 25 yes 0.... .....
+ 25 H025 no ..... .....
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+ 2 7 yes ..... 0....
+ 7 19 no ..... .....
+ 19 30 no ..... .....
+ 30 H005 yes ..... ....0
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+ 24 H032 yes ..... .1...
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+ 7 14 yes ..... ...1.
+ 14 H024 no ..... .....
+ 14 3 yes ..... .11..
+ 3 23 yes ..... ....0
+ 23 H013 no ..... .....
+ 23 32 yes ..... 1....
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+ 4 20 no ..... .....
+ 20 H029 yes ..... ....1
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+ 4 18 yes ...1. .....
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+ 21 31 no ..... .....
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+ 31 H003 yes ....1 .....
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+ 33 H014 yes 0.... .....
+ 33 15 no ..... .....
+ 15 H017 no ..... .....
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+ 5 34 yes ...0. .....
+ 34 H018 no ..... .....
+ 34 11 yes .0... .....
+ 11 13 no ..... .....
+ 13 H028 yes ..... ..0..
+ 13 H001 no ..... .....
+ 11 9 no ..... .....
+ 9 H015 yes ..... ...0.
+ 9 H020 yes ..... ....0
+ 3 H019 no ..... .....
+
+
+
+
+
+ +--H030
+ +-------------------------------------------------------------------------------------------------27
+ ! +--H006
+ !
+ ! +--H035
+ ! +----------------22
+ ! ! +--H007
+ ! !
+-10 ! +--------H012
+ ! +-------------------------------------------------------------------------17 !
+ ! ! ! +----29 +--H021
+ ! ! ! ! ! +-26
+ ! ! ! ! +-16 +--H009
+ ! ! +-----8 !
+ ! ! ! +-----H002
+ ! ! !
+ +-----1 ! +--H023
+ ! +-----------6
+ ! +--H026
+ !
+ ! +-----------------------------------------------------------------------H025
+ ! !
+ ! ! +--------------------------------------------------------------------H004
+ +----------------------25 !
+ ! ! +--H032
+ ! ! +-------------------------------------------------------------24
+ +--2 ! +--H016
+ ! !
+ ! ! +--H005
+ ! ! +-30
+ +--7 +----------------------------------------------------19 +--H008
+ ! ! !
+ ! ! +-----H024
+ ! !
+ ! ! +--------------------------------------------------H031
+ ! ! !
+ +----14 ! +--------------------------------------------H013
+ ! ! !
+ ! ! +-23 +-----------------------------------------H022
+ ! ! ! ! !
+ ! ! ! +-32 +--------------------------------------H029
+ ! ! ! ! !
+ ! ! ! +-20 +-----------------------------------H034
+ +-------28 ! ! !
+ ! ! +--4 +--------------------------------H033
+ ! ! ! !
+ ! ! +-18 +-----------------------------H010
+ ! ! ! !
+ ! ! ! ! +-----H014
+ ! ! +-12 +-------------------33
+ ! ! ! ! ! +--H017
+ ! ! ! ! +-15
+ ! ! ! ! +--H027
+ +--3 +--5
+ ! ! +--H011
+ ! ! +-------------31
+ ! ! ! +--H003
+ ! +-------21
+ ! ! +-----------H018
+ ! ! !
+ ! +----34 +--H028
+ ! ! +----13
+ ! ! ! +--H001
+ ! +-11
+ ! ! +--H015
+ ! +-----9
+ ! +--H020
+ !
+ +-----------------------------------------------H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 10 no ..... .....
+ 10 27 no ..... .....
+ 27 H030 yes ..... ...1.
+ 27 H006 yes .0... .....
+ 10 1 no ..... .....
+ 1 17 yes ...1. .....
+ 17 22 no ..... .....
+ 22 H035 yes ..... ....0
+ 22 H007 no ..... .....
+ 17 8 yes ..1.. .....
+ 8 29 yes ..... 0....
+ 29 H012 no ..... .....
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+ 16 26 yes ..... ..1..
+ 26 H021 yes 0...1 .....
+ 26 H009 maybe ....0 .....
+ 16 H002 maybe ....1 .....
+ 8 6 no ..... .....
+ 6 H023 no ..... .....
+ 6 H026 yes 0.... .....
+ 1 25 yes 0.... .....
+ 25 H025 no ..... .....
+ 25 2 yes ....1 .....
+ 2 H004 no ..... .....
+ 2 7 yes ..... 0....
+ 7 24 yes ...1. .....
+ 24 H032 yes ..... .1...
+ 24 H016 no ..... .....
+ 7 14 no ..... .....
+ 14 19 no ..... .....
+ 19 30 no ..... .....
+ 30 H005 yes ..... ....0
+ 30 H008 no ..... .....
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+ 14 28 yes ..... ..1..
+ 28 H031 no ..... .....
+ 28 3 yes ..... .1.1.
+ 3 23 yes ..... ....0
+ 23 H013 no ..... .....
+ 23 32 yes ..... 1....
+ 32 H022 no ..... .....
+ 32 20 yes ....0 .....
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+ 20 4 no ..... .....
+ 4 H034 no ..... .....
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+ 18 H033 no ..... .....
+ 18 12 yes 1.... .....
+ 12 H010 no ..... .....
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+ 5 33 yes ..1.. .....
+ 33 H014 yes 0.... .....
+ 33 15 no ..... .....
+ 15 H017 no ..... .....
+ 15 H027 yes ..... 0...0
+ 5 21 no ..... .....
+ 21 31 no ..... .....
+ 31 H011 no ..... .....
+ 31 H003 yes ....1 .....
+ 21 34 yes ...0. .....
+ 34 H018 no ..... .....
+ 34 11 yes .0... .....
+ 11 13 no ..... .....
+ 13 H028 yes ..... ..0..
+ 13 H001 no ..... .....
+ 11 9 no ..... .....
+ 9 H015 yes ..... ...0.
+ 9 H020 yes ..... ....0
+ 3 H019 no ..... .....
+
+
+
+
+
+ +--H030
+ +-------------------------------------------------------------------------------------------------27
+ ! +--H006
+ !
+ ! +--H035
+ ! +----------------22
+ ! ! +--H007
+ ! !
+-10 ! +--------H012
+ ! +-------------------------------------------------------------------------17 !
+ ! ! ! +----29 +--H021
+ ! ! ! ! ! +-26
+ ! ! ! ! +-16 +--H009
+ ! ! +-----8 !
+ ! ! ! +-----H002
+ +-----1 !
+ ! ! +--H023
+ ! +-----------6
+ ! +--H026
+ !
+ ! +-----------------------------------------------------------------------H025
+ ! !
+ +----------------------25 +--------------------------------------------------------------------H004
+ ! !
+ ! ! +--H032
+ +--2 +-------------------------------------------------------------24
+ ! ! +--H016
+ ! !
+ +--7 +-----------------------------------------------------------H024
+ ! !
+ ! ! +--H005
+ ! ! +----------------------------------------------------30
+ +----14 ! +--H008
+ ! !
+ ! ! +--------------------------------------------------H031
+ ! ! !
+ ! ! ! +--------------------------------------------H013
+ +-19 ! !
+ ! ! +-23 +-----------------------------------------H022
+ ! ! ! ! !
+ ! ! ! +-32 +--------------------------------------H029
+ ! ! ! ! !
+ ! ! ! +-20 +-----------------------------------H034
+ +----28 ! ! !
+ ! ! +--4 +--------------------------------H033
+ ! ! ! !
+ ! ! +-18 +-----------------------------H010
+ ! ! ! !
+ ! ! ! ! +-----H014
+ ! ! +-12 +-------------------33
+ ! ! ! ! ! +--H017
+ ! ! ! ! +-15
+ ! ! ! ! +--H027
+ +--3 +--5
+ ! ! +--H011
+ ! ! +-------------31
+ ! ! ! +--H003
+ ! +-------21
+ ! ! +-----------H018
+ ! ! !
+ ! +----34 +--H028
+ ! ! +----13
+ ! ! ! +--H001
+ ! +-11
+ ! ! +--H015
+ ! +-----9
+ ! +--H020
+ !
+ +-----------------------------------------------H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 10 no ..... .....
+ 10 27 no ..... .....
+ 27 H030 yes ..... ...1.
+ 27 H006 yes .0... .....
+ 10 1 no ..... .....
+ 1 17 yes ...1. .....
+ 17 22 no ..... .....
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+ 3 23 yes ..... ....0
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+ 11 13 no ..... .....
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+ 13 H001 no ..... .....
+ 11 9 no ..... .....
+ 9 H015 yes ..... ...0.
+ 9 H020 yes ..... ....0
+ 3 H019 no ..... .....
+
+
+
+
+
+ +--H030
+ +-------------------------------------------------------------------------------------------------27
+ ! +--H006
+ !
+ ! +--H035
+ ! +----------------22
+ ! ! +--H007
+ ! !
+-10 ! +--------H012
+ ! +-------------------------------------------------------------------------17 !
+ ! ! ! +----29 +--H021
+ ! ! ! ! ! +-26
+ ! ! ! ! +-16 +--H009
+ ! ! +-----8 !
+ ! ! ! +-----H002
+ +-----1 !
+ ! ! +--H023
+ ! +-----------6
+ ! +--H026
+ !
+ ! +-----------------------------------------------------------------------H025
+ ! !
+ +----------------------25 +--------------------------------------------------------------------H004
+ ! !
+ +--2 +--H032
+ ! +-------------------------------------------------------------24
+ ! ! +--H016
+ +--7
+ ! +-----------------------------------------------------------H024
+ ! !
+ +----14 +--------------------------------------------------------H005
+ ! !
+ ! ! +-----------------------------------------------------H008
+ +-30 !
+ ! ! +--------------------------------------------------H031
+ ! ! !
+ ! ! ! +--------------------------------------------H013
+ +-19 ! !
+ ! ! +-23 +-----------------------------------------H022
+ ! ! ! ! !
+ ! ! ! +-32 +--------------------------------------H029
+ ! ! ! ! !
+ ! ! ! +-20 +-----------------------------------H034
+ +-28 ! ! !
+ ! ! +--4 +--------------------------------H033
+ ! ! ! !
+ ! ! +-18 +-----------------------------H010
+ ! ! ! !
+ ! ! ! ! +-----H014
+ ! ! +-12 +-------------------33
+ ! ! ! ! ! +--H017
+ ! ! ! ! +-15
+ ! ! ! ! +--H027
+ +--3 +--5
+ ! ! +--H011
+ ! ! +-------------31
+ ! ! ! +--H003
+ ! +-------21
+ ! ! +-----------H018
+ ! ! !
+ ! +----34 +--H028
+ ! ! +----13
+ ! ! ! +--H001
+ ! +-11
+ ! ! +--H015
+ ! +-----9
+ ! +--H020
+ !
+ +-----------------------------------------------H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 10 no ..... .....
+ 10 27 no ..... .....
+ 27 H030 yes ..... ...1.
+ 27 H006 yes .0... .....
+ 10 1 no ..... .....
+ 1 17 yes ...1. .....
+ 17 22 no ..... .....
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+ 8 29 yes ..... 0....
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+ 24 H016 no ..... .....
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+ 30 19 no ..... .....
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+ 3 23 yes ..... ....0
+ 23 H013 no ..... .....
+ 23 32 yes ..... 1....
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+ 20 4 no ..... .....
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+ 21 34 yes ...0. .....
+ 34 H018 no ..... .....
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+ 11 13 no ..... .....
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+ 13 H001 no ..... .....
+ 11 9 no ..... .....
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+ 9 H020 yes ..... ....0
+ 3 H019 no ..... .....
+
+
+
+
+
+ +--H030
+ +-------------------------------------------------------------------------------------------------27
+ ! +--H006
+ !
+ ! +--H035
+ ! +----------------22
+ ! ! +--H007
+ ! !
+-10 ! +--------H012
+ ! +-------------------------------------------------------------------------17 !
+ ! ! ! +----29 +--H021
+ ! ! ! ! ! +-26
+ ! ! ! ! +-16 +--H009
+ ! ! +-----8 !
+ ! ! ! +-----H002
+ +-----1 !
+ ! ! +--H023
+ ! +-----------6
+ ! +--H026
+ !
+ ! +-----------------------------------------------------------------------H025
+ ! !
+ +----------------------25 +--------------------------------------------------------------------H004
+ ! !
+ +--2 +--H032
+ ! +-------------------------------------------------------------24
+ ! ! +--H016
+ +--7
+ ! +-----------------------------------------------------------H024
+ ! !
+ +----14 +--------------------------------------------------------H008
+ ! !
+ ! ! +-----------------------------------------------------H005
+ +-19 !
+ ! ! +--------------------------------------------------H031
+ ! ! !
+ ! ! ! +--------------------------------------------H013
+ +-30 ! !
+ ! ! +-23 +-----------------------------------------H022
+ ! ! ! ! !
+ ! ! ! +-32 +--------------------------------------H029
+ ! ! ! ! !
+ ! ! ! +-20 +-----------------------------------H034
+ +-28 ! ! !
+ ! ! +--4 +--------------------------------H033
+ ! ! ! !
+ ! ! +-18 +-----------------------------H010
+ ! ! ! !
+ ! ! ! ! +-----H014
+ ! ! +-12 +-------------------33
+ ! ! ! ! ! +--H017
+ ! ! ! ! +-15
+ ! ! ! ! +--H027
+ +--3 +--5
+ ! ! +--H011
+ ! ! +-------------31
+ ! ! ! +--H003
+ ! +-------21
+ ! ! +-----------H018
+ ! ! !
+ ! +----34 +--H028
+ ! ! +----13
+ ! ! ! +--H001
+ ! +-11
+ ! ! +--H015
+ ! +-----9
+ ! +--H020
+ !
+ +-----------------------------------------------H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 10 no ..... .....
+ 10 27 no ..... .....
+ 27 H030 yes ..... ...1.
+ 27 H006 yes .0... .....
+ 10 1 no ..... .....
+ 1 17 yes ...1. .....
+ 17 22 no ..... .....
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+ 8 29 yes ..... 0....
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+ 8 6 no ..... .....
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+ 5 21 no ..... .....
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+ 13 H001 no ..... .....
+ 11 9 no ..... .....
+ 9 H015 yes ..... ...0.
+ 9 H020 yes ..... ....0
+ 3 H019 no ..... .....
+
+
+
+
+
+ +--H030
+ +-------------------------------------------------------------------------------------------------27
+ ! +--H006
+ !
+ ! +--H035
+ ! +----------------22
+ ! ! +--H007
+ ! !
+-10 ! +--H021
+ ! +-------------------------------------------------------------------------17 +----26
+ ! ! ! ! +--H009
+ ! ! ! +----16
+ ! ! ! ! ! +--H012
+ ! ! ! ! +----29
+ ! ! +-----8 +--H002
+ ! ! !
+ +-----1 ! +--H023
+ ! +-----------6
+ ! +--H026
+ !
+ ! +-----------------------------------------------------------------------H025
+ ! !
+ ! ! +--------------------------------------------------------------------H004
+ +----------------------25 !
+ ! ! +--H005
+ ! ! +-------------------------------------------------------------30
+ +--2 ! +--H008
+ ! !
+ ! ! +-----H031
+ ! ! +----------------------------------------------------28
+ +-19 ! ! +--H032
+ ! ! +-24
+ ! ! +--H016
+ ! !
+ ! ! +--------------------------------------------------H024
+ ! ! !
+ +-----7 ! +--------------------------------------------H013
+ ! ! !
+ ! ! +-23 +-----------------------------------------H022
+ ! ! ! ! !
+ ! ! ! +-32 +--H029
+ ! ! ! ! +----------------------------------20
+ ! ! ! ! ! +--H034
+ +-------14 ! +--4
+ ! ! ! +--------------------------------H033
+ ! ! ! !
+ ! ! +----18 +-----------------------------H010
+ ! ! ! !
+ ! ! ! ! +--H011
+ ! ! +-12 +----------------------31
+ ! ! ! ! +--H003
+ ! ! ! !
+ ! ! +-21 +-----H014
+ +--3 ! +-------------33
+ ! ! ! ! +--H017
+ ! ! ! +-15
+ ! +-----5 +--H027
+ ! !
+ ! ! +-----------H018
+ ! ! !
+ ! +-------34 +--H028
+ ! ! +----13
+ ! ! ! +--H001
+ ! +-11
+ ! ! +--H015
+ ! +-----9
+ ! +--H020
+ !
+ +-----------------------------------------------H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 10 no ..... .....
+ 10 27 no ..... .....
+ 27 H030 yes ..... ...1.
+ 27 H006 yes .0... .....
+ 10 1 no ..... .....
+ 1 17 yes ...1. .....
+ 17 22 no ..... .....
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+ 8 16 yes ..... 0....
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+ 26 H009 no ..... .....
+ 16 29 no ..... .....
+ 29 H012 no ..... .....
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+ 8 6 no ..... .....
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+ 1 25 yes 0.... .....
+ 25 H025 no ..... .....
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+ 2 19 yes ..... 0....
+ 19 30 no ..... .....
+ 30 H005 yes ..... ....0
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+ 7 14 yes ..... ...1.
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+ 3 23 yes ..... ....0
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+ 18 H033 no ..... .....
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+ 21 31 no ..... .....
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+ 33 15 no ..... .....
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+ 5 34 yes ...0. .....
+ 34 H018 no ..... .....
+ 34 11 yes .0... .....
+ 11 13 no ..... .....
+ 13 H028 yes ..... ..0..
+ 13 H001 no ..... .....
+ 11 9 no ..... .....
+ 9 H015 yes ..... ...0.
+ 9 H020 yes ..... ....0
+ 3 H019 no ..... .....
+
+
+
+
+
+ +--H030
+ +-------------------------------------------------------------------------------------------------27
+ ! +--H006
+ !
+ ! +--H035
+ ! +----------------22
+ ! ! +--H007
+ ! !
+-10 ! +--H021
+ ! +-------------------------------------------------------------------------17 +----26
+ ! ! ! ! +--H009
+ ! ! ! +----16
+ ! ! ! ! ! +--H012
+ ! ! ! ! +----29
+ ! ! +-----8 +--H002
+ ! ! !
+ +-----1 ! +--H023
+ ! +-----------6
+ ! +--H026
+ !
+ ! +-----------------------------------------------------------------------H025
+ ! !
+ ! ! +--------------------------------------------------------------------H004
+ +----------------------25 !
+ ! ! +--H005
+ ! ! +-------------------------------------------------------------30
+ +--2 ! +--H008
+ ! !
+ ! ! +-----H031
+ ! ! +----------------------------------------------------28
+ +-19 ! ! +--H032
+ ! ! +-24
+ ! ! +--H016
+ ! !
+ ! ! +--------------------------------------------------H024
+ ! ! !
+ +-----7 ! +--------------------------------------------H013
+ ! ! !
+ ! ! +-23 +-----------------------------------------H022
+ ! ! ! ! !
+ ! ! ! +-32 +--H029
+ ! ! ! ! +----------------------------------20
+ ! ! ! ! ! +--H034
+ +-------14 ! +--4
+ ! ! ! +--------------------------------H033
+ ! ! ! !
+ ! ! +----18 +-----------------------------H010
+ ! ! ! !
+ ! ! +-12 +--------------------------H003
+ ! ! ! !
+ ! ! +-21 +-----------------------H011
+ ! ! ! !
+ ! ! ! ! +-----H014
+ +--3 +-31 +-------------33
+ ! ! ! ! +--H017
+ ! ! ! +-15
+ ! +--5 +--H027
+ ! !
+ ! ! +-----------H018
+ ! ! !
+ ! +-------34 +--H028
+ ! ! +----13
+ ! ! ! +--H001
+ ! +-11
+ ! ! +--H015
+ ! +-----9
+ ! +--H020
+ !
+ +-----------------------------------------------H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 10 no ..... .....
+ 10 27 no ..... .....
+ 27 H030 yes ..... ...1.
+ 27 H006 yes .0... .....
+ 10 1 no ..... .....
+ 1 17 yes ...1. .....
+ 17 22 no ..... .....
+ 22 H035 yes ..... ....0
+ 22 H007 no ..... .....
+ 17 8 yes ..1.. .....
+ 8 16 yes ..... 0....
+ 16 26 yes ..... ..1..
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+ 26 H009 no ..... .....
+ 16 29 no ..... .....
+ 29 H012 no ..... .....
+ 29 H002 yes ....1 .....
+ 8 6 no ..... .....
+ 6 H023 no ..... .....
+ 6 H026 yes 0.... .....
+ 1 25 yes 0.... .....
+ 25 H025 no ..... .....
+ 25 2 yes ....1 .....
+ 2 H004 no ..... .....
+ 2 19 yes ..... 0....
+ 19 30 no ..... .....
+ 30 H005 yes ..... ....0
+ 30 H008 no ..... .....
+ 19 7 no ..... .....
+ 7 28 no ..... .....
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+ 28 24 yes ...1. .....
+ 24 H032 yes ..... .1...
+ 24 H016 no ..... .....
+ 7 14 yes ..... ...1.
+ 14 H024 no ..... .....
+ 14 3 yes ..... .11..
+ 3 23 yes ..... ....0
+ 23 H013 no ..... .....
+ 23 32 yes ..... 1....
+ 32 H022 no ..... .....
+ 32 4 yes ....0 .....
+ 4 20 no ..... .....
+ 20 H029 yes ..... ....1
+ 20 H034 no ..... .....
+ 4 18 yes ...1. .....
+ 18 H033 no ..... .....
+ 18 12 yes 1.... .....
+ 12 H010 no ..... .....
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+ 21 H003 yes ....1 .....
+ 21 31 no ..... .....
+ 31 H011 no ..... .....
+ 31 5 no ..... .....
+ 5 33 yes ..1.. .....
+ 33 H014 yes 0.... .....
+ 33 15 no ..... .....
+ 15 H017 no ..... .....
+ 15 H027 yes ..... 0...0
+ 5 34 yes ...0. .....
+ 34 H018 no ..... .....
+ 34 11 yes .0... .....
+ 11 13 no ..... .....
+ 13 H028 yes ..... ..0..
+ 13 H001 no ..... .....
+ 11 9 no ..... .....
+ 9 H015 yes ..... ...0.
+ 9 H020 yes ..... ....0
+ 3 H019 no ..... .....
+
+
+
+
+
+ +--H030
+ +-------------------------------------------------------------------------------------------------27
+ ! +--H006
+ !
+ ! +--H035
+ ! +----------------22
+ ! ! +--H007
+ ! !
+-10 ! +--H021
+ ! +-------------------------------------------------------------------------17 +----26
+ ! ! ! ! +--H009
+ ! ! ! +----16
+ ! ! ! ! ! +--H012
+ ! ! ! ! +----29
+ ! ! +-----8 +--H002
+ ! ! !
+ +-----1 ! +--H023
+ ! +-----------6
+ ! +--H026
+ !
+ ! +-----------------------------------------------------------------------H025
+ ! !
+ ! ! +--------------------------------------------------------------------H004
+ +----------------------25 !
+ ! ! +--H005
+ ! ! +-------------------------------------------------------------30
+ +--2 ! +--H008
+ ! !
+ ! ! +-----H031
+ ! ! +----------------------------------------------------28
+ +-19 ! ! +--H032
+ ! ! +-24
+ ! ! +--H016
+ ! !
+ ! ! +--------------------------------------------------H024
+ ! ! !
+ +-----7 ! +--------------------------------------------H013
+ ! ! !
+ ! ! +-23 +-----------------------------------------H022
+ ! ! ! ! !
+ ! ! ! +-32 +--H029
+ ! ! ! ! +----------------------------------20
+ ! ! ! ! ! +--H034
+ +-------14 ! +--4
+ ! ! ! +--------------------------------H033
+ ! ! ! !
+ ! ! +----18 +-----------------------------H010
+ ! ! ! !
+ ! ! +-12 +--------------------------H011
+ ! ! ! !
+ ! ! +-31 +-----------------------H003
+ ! ! ! !
+ ! ! ! ! +-----H014
+ +--3 +-21 +-------------33
+ ! ! ! ! +--H017
+ ! ! ! +-15
+ ! +--5 +--H027
+ ! !
+ ! ! +-----------H018
+ ! ! !
+ ! +-------34 +--H028
+ ! ! +----13
+ ! ! ! +--H001
+ ! +-11
+ ! ! +--H015
+ ! +-----9
+ ! +--H020
+ !
+ +-----------------------------------------------H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 10 no ..... .....
+ 10 27 no ..... .....
+ 27 H030 yes ..... ...1.
+ 27 H006 yes .0... .....
+ 10 1 no ..... .....
+ 1 17 yes ...1. .....
+ 17 22 no ..... .....
+ 22 H035 yes ..... ....0
+ 22 H007 no ..... .....
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+ 8 16 yes ..... 0....
+ 16 26 yes ..... ..1..
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+ 26 H009 no ..... .....
+ 16 29 no ..... .....
+ 29 H012 no ..... .....
+ 29 H002 yes ....1 .....
+ 8 6 no ..... .....
+ 6 H023 no ..... .....
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+ 1 25 yes 0.... .....
+ 25 H025 no ..... .....
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+ 2 19 yes ..... 0....
+ 19 30 no ..... .....
+ 30 H005 yes ..... ....0
+ 30 H008 no ..... .....
+ 19 7 no ..... .....
+ 7 28 no ..... .....
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+ 28 24 yes ...1. .....
+ 24 H032 yes ..... .1...
+ 24 H016 no ..... .....
+ 7 14 yes ..... ...1.
+ 14 H024 no ..... .....
+ 14 3 yes ..... .11..
+ 3 23 yes ..... ....0
+ 23 H013 no ..... .....
+ 23 32 yes ..... 1....
+ 32 H022 no ..... .....
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+ 4 20 no ..... .....
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+ 18 H033 no ..... .....
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+ 12 H010 no ..... .....
+ 12 31 yes ..... ....1
+ 31 H011 no ..... .....
+ 31 21 no ..... .....
+ 21 H003 yes ....1 .....
+ 21 5 no ..... .....
+ 5 33 yes ..1.. .....
+ 33 H014 yes 0.... .....
+ 33 15 no ..... .....
+ 15 H017 no ..... .....
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+ 5 34 yes ...0. .....
+ 34 H018 no ..... .....
+ 34 11 yes .0... .....
+ 11 13 no ..... .....
+ 13 H028 yes ..... ..0..
+ 13 H001 no ..... .....
+ 11 9 no ..... .....
+ 9 H015 yes ..... ...0.
+ 9 H020 yes ..... ....0
+ 3 H019 no ..... .....
+
+
+
+
+
+ +--H030
+ +-------------------------------------------------------------------------------------------------27
+ ! +--H006
+ !
+ ! +--H035
+ ! +----------------22
+ ! ! +--H007
+ ! !
+-10 ! +--H021
+ ! +-------------------------------------------------------------------------17 +----26
+ ! ! ! ! +--H009
+ ! ! ! +----16
+ ! ! ! ! ! +--H012
+ ! ! ! ! +----29
+ ! ! +-----8 +--H002
+ +-----1 !
+ ! ! +--H023
+ ! +-----------6
+ ! +--H026
+ !
+ ! +-----------------------------------------------------------------------H025
+ ! !
+ +----------------------25 +--------------------------------------------------------------------H004
+ ! !
+ +--2 +-----------------------------------------------------------------H008
+ ! !
+ ! ! +--------------------------------------------------------------H005
+ +-19 !
+ ! ! +-----H031
+ ! ! +----------------------------------------------------28
+ ! ! ! ! +--H032
+ +-30 ! +-24
+ ! ! +--H016
+ ! !
+ ! ! +--------------------------------------------------H024
+ ! ! !
+ +--7 ! +--------------------------------------------H013
+ ! ! !
+ ! ! +-23 +-----------------------------------------H022
+ ! ! ! ! !
+ ! ! ! +-32 +--H029
+ ! ! ! ! +----------------------------------20
+ ! ! ! ! ! +--H034
+ +-------14 ! +--4
+ ! ! ! +--------------------------------H033
+ ! ! ! !
+ ! ! +----18 +-----------------------------H010
+ ! ! ! !
+ ! ! ! ! +--H011
+ ! ! +-12 +----------------------31
+ ! ! ! ! +--H003
+ ! ! ! !
+ ! ! +-21 +-----H014
+ +--3 ! +-------------33
+ ! ! ! ! +--H017
+ ! ! ! +-15
+ ! +-----5 +--H027
+ ! !
+ ! ! +-----------H018
+ ! ! !
+ ! +-------34 +--H028
+ ! ! +----13
+ ! ! ! +--H001
+ ! +-11
+ ! ! +--H015
+ ! +-----9
+ ! +--H020
+ !
+ +-----------------------------------------------H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 10 no ..... .....
+ 10 27 no ..... .....
+ 27 H030 yes ..... ...1.
+ 27 H006 yes .0... .....
+ 10 1 no ..... .....
+ 1 17 yes ...1. .....
+ 17 22 no ..... .....
+ 22 H035 yes ..... ....0
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+ 8 16 yes ..... 0....
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+ 26 H009 no ..... .....
+ 16 29 no ..... .....
+ 29 H012 no ..... .....
+ 29 H002 yes ....1 .....
+ 8 6 no ..... .....
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+ 25 H025 no ..... .....
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+ 2 19 yes ..... 0....
+ 19 H008 no ..... .....
+ 19 30 no ..... .....
+ 30 H005 yes ..... ....0
+ 30 7 no ..... .....
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+ 7 14 yes ..... ...1.
+ 14 H024 no ..... .....
+ 14 3 yes ..... .11..
+ 3 23 yes ..... ....0
+ 23 H013 no ..... .....
+ 23 32 yes ..... 1....
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+ 4 20 no ..... .....
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+ 21 31 no ..... .....
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+ 5 34 yes ...0. .....
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+ 34 11 yes .0... .....
+ 11 13 no ..... .....
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+ 13 H001 no ..... .....
+ 11 9 no ..... .....
+ 9 H015 yes ..... ...0.
+ 9 H020 yes ..... ....0
+ 3 H019 no ..... .....
+
+
+
+
+
+ +--H030
+ +-------------------------------------------------------------------------------------------------27
+ ! +--H006
+ !
+ ! +--H035
+ ! +----------------22
+ ! ! +--H007
+ ! !
+-10 ! +--H021
+ ! +-------------------------------------------------------------------------17 +----26
+ ! ! ! ! +--H009
+ ! ! ! +----16
+ ! ! ! ! ! +--H012
+ ! ! ! ! +----29
+ ! ! +-----8 +--H002
+ +-----1 !
+ ! ! +--H023
+ ! +-----------6
+ ! +--H026
+ !
+ ! +-----------------------------------------------------------------------H025
+ ! !
+ +----------------------25 +--------------------------------------------------------------------H004
+ ! !
+ +--2 +-----------------------------------------------------------------H005
+ ! !
+ ! ! +--------------------------------------------------------------H008
+ +-30 !
+ ! ! +-----H031
+ ! ! +----------------------------------------------------28
+ ! ! ! ! +--H032
+ +-19 ! +-24
+ ! ! +--H016
+ ! !
+ ! ! +--------------------------------------------------H024
+ ! ! !
+ +--7 ! +--------------------------------------------H013
+ ! ! !
+ ! ! +-23 +-----------------------------------------H022
+ ! ! ! ! !
+ ! ! ! +-32 +--H029
+ ! ! ! ! +----------------------------------20
+ ! ! ! ! ! +--H034
+ +-------14 ! +--4
+ ! ! ! +--------------------------------H033
+ ! ! ! !
+ ! ! +----18 +-----------------------------H010
+ ! ! ! !
+ ! ! ! ! +--H011
+ ! ! +-12 +----------------------31
+ ! ! ! ! +--H003
+ ! ! ! !
+ ! ! +-21 +-----H014
+ +--3 ! +-------------33
+ ! ! ! ! +--H017
+ ! ! ! +-15
+ ! +-----5 +--H027
+ ! !
+ ! ! +-----------H018
+ ! ! !
+ ! +-------34 +--H028
+ ! ! +----13
+ ! ! ! +--H001
+ ! +-11
+ ! ! +--H015
+ ! +-----9
+ ! +--H020
+ !
+ +-----------------------------------------------H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 10 no ..... .....
+ 10 27 no ..... .....
+ 27 H030 yes ..... ...1.
+ 27 H006 yes .0... .....
+ 10 1 no ..... .....
+ 1 17 yes ...1. .....
+ 17 22 no ..... .....
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+ 22 H007 no ..... .....
+ 17 8 yes ..1.. .....
+ 8 16 yes ..... 0....
+ 16 26 yes ..... ..1..
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+ 26 H009 no ..... .....
+ 16 29 no ..... .....
+ 29 H012 no ..... .....
+ 29 H002 yes ....1 .....
+ 8 6 no ..... .....
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+ 1 25 yes 0.... .....
+ 25 H025 no ..... .....
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+ 30 H005 yes ..... ....0
+ 30 19 no ..... .....
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+ 24 H016 no ..... .....
+ 7 14 yes ..... ...1.
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+ 14 3 yes ..... .11..
+ 3 23 yes ..... ....0
+ 23 H013 no ..... .....
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+ 4 20 no ..... .....
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+ 5 34 yes ...0. .....
+ 34 H018 no ..... .....
+ 34 11 yes .0... .....
+ 11 13 no ..... .....
+ 13 H028 yes ..... ..0..
+ 13 H001 no ..... .....
+ 11 9 no ..... .....
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+ 9 H020 yes ..... ....0
+ 3 H019 no ..... .....
+
+
+
+
+
+ +--H030
+ +-------------------------------------------------------------------------------------------------27
+ ! +--H006
+ !
+ ! +--H035
+ ! +----------------22
+ ! ! +--H007
+ ! !
+-10 ! +--H021
+ ! +-------------------------------------------------------------------------17 +----26
+ ! ! ! ! +--H009
+ ! ! ! +----16
+ ! ! ! ! ! +--H012
+ ! ! ! ! +----29
+ ! ! +-----8 +--H002
+ ! ! !
+ +-----1 ! +--H023
+ ! +-----------6
+ ! +--H026
+ !
+ ! +-----------------------------------------------------------------------H025
+ ! !
+ ! ! +--------------------------------------------------------------------H004
+ +----------------------25 !
+ ! ! +-----H031
+ ! ! +----------------------------------------------------------28
+ +--2 ! ! +--H032
+ ! ! +-24
+ ! ! +--H016
+ ! !
+ ! ! +--H005
+ +--7 +----------------------------------------------------30
+ ! ! +--H008
+ ! !
+ ! ! +--------------------------------------------------H024
+ ! ! !
+ ! ! ! +--------------------------------------------H013
+ +-------19 ! !
+ ! ! +-23 +-----------------------------------------H022
+ ! ! ! ! !
+ ! ! ! +-32 +--H029
+ ! ! ! ! +----------------------------------20
+ ! ! ! ! ! +--H034
+ +----14 ! +--4
+ ! ! ! +--------------------------------H033
+ ! ! ! !
+ ! ! +----18 +-----------------------------H010
+ ! ! ! !
+ ! ! ! ! +--H011
+ ! ! +-12 +----------------------31
+ ! ! ! ! +--H003
+ ! ! ! !
+ ! ! +-21 +-----H014
+ +--3 ! +-------------33
+ ! ! ! ! +--H017
+ ! ! ! +-15
+ ! +-----5 +--H027
+ ! !
+ ! ! +-----------H018
+ ! ! !
+ ! +-------34 +--H028
+ ! ! +----13
+ ! ! ! +--H001
+ ! +-11
+ ! ! +--H015
+ ! +-----9
+ ! +--H020
+ !
+ +-----------------------------------------------H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 10 no ..... .....
+ 10 27 no ..... .....
+ 27 H030 yes ..... ...1.
+ 27 H006 yes .0... .....
+ 10 1 no ..... .....
+ 1 17 yes ...1. .....
+ 17 22 no ..... .....
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+ 8 16 yes ..... 0....
+ 16 26 yes ..... ..1..
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+ 26 H009 no ..... .....
+ 16 29 no ..... .....
+ 29 H012 no ..... .....
+ 29 H002 yes ....1 .....
+ 8 6 no ..... .....
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+ 25 H025 no ..... .....
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+ 7 28 no ..... .....
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+ 3 23 yes ..... ....0
+ 23 H013 no ..... .....
+ 23 32 yes ..... 1....
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+ 21 31 no ..... .....
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+ 15 H017 no ..... .....
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+ 5 34 yes ...0. .....
+ 34 H018 no ..... .....
+ 34 11 yes .0... .....
+ 11 13 no ..... .....
+ 13 H028 yes ..... ..0..
+ 13 H001 no ..... .....
+ 11 9 no ..... .....
+ 9 H015 yes ..... ...0.
+ 9 H020 yes ..... ....0
+ 3 H019 no ..... .....
+
+
+
+
+
+ +--H030
+ +-------------------------------------------------------------------------------------------------27
+ ! +--H006
+ !
+ ! +--H035
+ ! +----------------22
+ ! ! +--H007
+ ! !
+-10 ! +--------H012
+ ! +-------------------------------------------------------------------------17 !
+ ! ! ! +----29 +--H021
+ ! ! ! ! ! +-26
+ ! ! ! ! +-16 +--H009
+ ! ! +-----8 !
+ ! ! ! +-----H002
+ +-----1 !
+ ! ! +--H023
+ ! +-----------6
+ ! +--H026
+ !
+ ! +-----------------------------------------------------------------------H025
+ ! !
+ +----------------------25 +--------------------------------------------------------------------H004
+ ! !
+ ! ! +--H032
+ +--2 +-------------------------------------------------------------24
+ ! ! +--H016
+ ! !
+ ! ! +--H005
+ +--7 +-------------------------------------------------------30
+ ! ! +--H008
+ ! !
+ ! ! +-----------------------------------------------------H024
+ +----19 !
+ ! ! +--------------------------------------------------H031
+ ! ! !
+ ! ! ! +--------------------------------------------H013
+ +----14 ! !
+ ! ! +-23 +-----------------------------------------H022
+ ! ! ! ! !
+ ! ! ! +-32 +--------------------------------------H029
+ ! ! ! ! !
+ ! ! ! +-20 +-----------------------------------H034
+ +-28 ! ! !
+ ! ! +--4 +--------------------------------H033
+ ! ! ! !
+ ! ! +-18 +-----------------------------H010
+ ! ! ! !
+ ! ! ! ! +--H011
+ ! ! +-12 +----------------------31
+ ! ! ! ! +--H003
+ ! ! ! !
+ ! ! +-21 +-----H014
+ +--3 ! +-------------33
+ ! ! ! ! +--H017
+ ! ! ! +-15
+ ! +-----5 +--H027
+ ! !
+ ! ! +-----------H018
+ ! ! !
+ ! +-------34 +--H028
+ ! ! +----13
+ ! ! ! +--H001
+ ! +-11
+ ! ! +--H015
+ ! +-----9
+ ! +--H020
+ !
+ +-----------------------------------------------H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 10 no ..... .....
+ 10 27 no ..... .....
+ 27 H030 yes ..... ...1.
+ 27 H006 yes .0... .....
+ 10 1 no ..... .....
+ 1 17 yes ...1. .....
+ 17 22 no ..... .....
+ 22 H035 yes ..... ....0
+ 22 H007 no ..... .....
+ 17 8 yes ..1.. .....
+ 8 29 yes ..... 0....
+ 29 H012 no ..... .....
+ 29 16 maybe ....? .....
+ 16 26 yes ..... ..1..
+ 26 H021 yes 0...1 .....
+ 26 H009 maybe ....0 .....
+ 16 H002 maybe ....1 .....
+ 8 6 no ..... .....
+ 6 H023 no ..... .....
+ 6 H026 yes 0.... .....
+ 1 25 yes 0.... .....
+ 25 H025 no ..... .....
+ 25 2 yes ....1 .....
+ 2 H004 no ..... .....
+ 2 7 yes ..... 0....
+ 7 24 yes ...1. .....
+ 24 H032 yes ..... .1...
+ 24 H016 no ..... .....
+ 7 19 no ..... .....
+ 19 30 no ..... .....
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+ 3 23 yes ..... ....0
+ 23 H013 no ..... .....
+ 23 32 yes ..... 1....
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+ 32 20 yes ....0 .....
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+ 20 4 no ..... .....
+ 4 H034 no ..... .....
+ 4 18 yes ...1. .....
+ 18 H033 no ..... .....
+ 18 12 yes 1.... .....
+ 12 H010 no ..... .....
+ 12 21 yes ..... ....1
+ 21 31 no ..... .....
+ 31 H011 no ..... .....
+ 31 H003 yes ....1 .....
+ 21 5 no ..... .....
+ 5 33 yes ..1.. .....
+ 33 H014 yes 0.... .....
+ 33 15 no ..... .....
+ 15 H017 no ..... .....
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+ 5 34 yes ...0. .....
+ 34 H018 no ..... .....
+ 34 11 yes .0... .....
+ 11 13 no ..... .....
+ 13 H028 yes ..... ..0..
+ 13 H001 no ..... .....
+ 11 9 no ..... .....
+ 9 H015 yes ..... ...0.
+ 9 H020 yes ..... ....0
+ 3 H019 no ..... .....
+
+
+
+
+
+ +--H030
+ +-------------------------------------------------------------------------------------------------27
+ ! +--H006
+ !
+ ! +--H035
+ ! +----------------22
+ ! ! +--H007
+ ! !
+-10 ! +--------H012
+ ! +-------------------------------------------------------------------------17 !
+ ! ! ! +----29 +--H021
+ ! ! ! ! ! +-26
+ ! ! ! ! +-16 +--H009
+ ! ! +-----8 !
+ ! ! ! +-----H002
+ +-----1 !
+ ! ! +--H023
+ ! +-----------6
+ ! +--H026
+ !
+ ! +-----------------------------------------------------------------------H025
+ ! !
+ +----------------------25 +--------------------------------------------------------------------H004
+ ! !
+ ! ! +--H032
+ +--2 +-------------------------------------------------------------24
+ ! ! +--H016
+ ! !
+ ! ! +--H005
+ +--7 +-------------------------------------------------------30
+ ! ! +--H008
+ ! !
+ ! ! +-----------------------------------------------------H024
+ +----19 !
+ ! ! +--------------------------------------------------H031
+ ! ! !
+ ! ! ! +--------------------------------------------H013
+ +----14 ! !
+ ! ! +-23 +-----------------------------------------H022
+ ! ! ! ! !
+ ! ! ! +-32 +--------------------------------------H029
+ ! ! ! ! !
+ ! ! ! +-20 +-----------------------------------H034
+ +-28 ! ! !
+ ! ! +--4 +--------------------------------H033
+ ! ! ! !
+ ! ! +-18 +-----------------------------H010
+ ! ! ! !
+ ! ! ! ! +-----H014
+ ! ! +-12 +-------------------33
+ ! ! ! ! ! +--H017
+ ! ! ! ! +-15
+ ! ! ! ! +--H027
+ +--3 +--5
+ ! ! +--H011
+ ! ! +-------------31
+ ! ! ! +--H003
+ ! +-------21
+ ! ! +-----------H018
+ ! ! !
+ ! +----34 +--H028
+ ! ! +----13
+ ! ! ! +--H001
+ ! +-11
+ ! ! +--H015
+ ! +-----9
+ ! +--H020
+ !
+ +-----------------------------------------------H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 10 no ..... .....
+ 10 27 no ..... .....
+ 27 H030 yes ..... ...1.
+ 27 H006 yes .0... .....
+ 10 1 no ..... .....
+ 1 17 yes ...1. .....
+ 17 22 no ..... .....
+ 22 H035 yes ..... ....0
+ 22 H007 no ..... .....
+ 17 8 yes ..1.. .....
+ 8 29 yes ..... 0....
+ 29 H012 no ..... .....
+ 29 16 maybe ....? .....
+ 16 26 yes ..... ..1..
+ 26 H021 yes 0...1 .....
+ 26 H009 maybe ....0 .....
+ 16 H002 maybe ....1 .....
+ 8 6 no ..... .....
+ 6 H023 no ..... .....
+ 6 H026 yes 0.... .....
+ 1 25 yes 0.... .....
+ 25 H025 no ..... .....
+ 25 2 yes ....1 .....
+ 2 H004 no ..... .....
+ 2 7 yes ..... 0....
+ 7 24 yes ...1. .....
+ 24 H032 yes ..... .1...
+ 24 H016 no ..... .....
+ 7 19 no ..... .....
+ 19 30 no ..... .....
+ 30 H005 yes ..... ....0
+ 30 H008 no ..... .....
+ 19 14 maybe ..... ...?.
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+ 14 28 yes ..... ..1..
+ 28 H031 maybe ..... ...0.
+ 28 3 yes ..... .1.1.
+ 3 23 yes ..... ....0
+ 23 H013 no ..... .....
+ 23 32 yes ..... 1....
+ 32 H022 no ..... .....
+ 32 20 yes ....0 .....
+ 20 H029 yes ..... ....1
+ 20 4 no ..... .....
+ 4 H034 no ..... .....
+ 4 18 yes ...1. .....
+ 18 H033 no ..... .....
+ 18 12 yes 1.... .....
+ 12 H010 no ..... .....
+ 12 5 yes ..... ....1
+ 5 33 yes ..1.. .....
+ 33 H014 yes 0.... .....
+ 33 15 no ..... .....
+ 15 H017 no ..... .....
+ 15 H027 yes ..... 0...0
+ 5 21 no ..... .....
+ 21 31 no ..... .....
+ 31 H011 no ..... .....
+ 31 H003 yes ....1 .....
+ 21 34 yes ...0. .....
+ 34 H018 no ..... .....
+ 34 11 yes .0... .....
+ 11 13 no ..... .....
+ 13 H028 yes ..... ..0..
+ 13 H001 no ..... .....
+ 11 9 no ..... .....
+ 9 H015 yes ..... ...0.
+ 9 H020 yes ..... ....0
+ 3 H019 no ..... .....
+
+
+
+
+
+ +--H030
+ +-------------------------------------------------------------------------------------------------27
+ ! +--H006
+ !
+ ! +--H035
+ ! +----------------22
+ ! ! +--H007
+ ! !
+-10 ! +--------H012
+ ! +-------------------------------------------------------------------------17 !
+ ! ! ! +----29 +--H021
+ ! ! ! ! ! +-26
+ ! ! ! ! +-16 +--H009
+ ! ! +-----8 !
+ ! ! ! +-----H002
+ +-----1 !
+ ! ! +--H023
+ ! +-----------6
+ ! +--H026
+ !
+ ! +-----------------------------------------------------------------------H025
+ ! !
+ +----------------------25 +--------------------------------------------------------------------H004
+ ! !
+ ! ! +--H032
+ +--2 +-------------------------------------------------------------24
+ ! ! +--H016
+ ! !
+ ! ! +--H005
+ +--7 +-------------------------------------------------------30
+ ! ! +--H008
+ ! !
+ ! ! +-----------------------------------------------------H024
+ +----19 !
+ ! ! +--------------------------------------------------H031
+ ! ! !
+ ! ! ! +--------------------------------------------H013
+ +----14 ! !
+ ! ! +-23 +-----------------------------------------H022
+ ! ! ! ! !
+ ! ! ! +-32 +--------------------------------------H029
+ ! ! ! ! !
+ ! ! ! +-20 +-----------------------------------H034
+ +-28 ! ! !
+ ! ! +--4 +--------------------------------H033
+ ! ! ! !
+ ! ! ! ! +-----------------------------H010
+ ! ! +-18 !
+ ! ! ! ! +--H011
+ ! ! ! ! +-------31
+ ! ! +-12 ! +--H003
+ ! ! ! +-------------21
+ ! ! ! ! ! +-----H014
+ +--3 ! ! +----33
+ ! ! ! ! +--H017
+ ! +--5 +-15
+ ! ! +--H027
+ ! !
+ ! ! +-----------H018
+ ! ! !
+ ! +-------------34 +--H028
+ ! ! +----13
+ ! ! ! +--H001
+ ! +-11
+ ! ! +--H015
+ ! +-----9
+ ! +--H020
+ !
+ +-----------------------------------------------H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 10 no ..... .....
+ 10 27 no ..... .....
+ 27 H030 yes ..... ...1.
+ 27 H006 yes .0... .....
+ 10 1 no ..... .....
+ 1 17 yes ...1. .....
+ 17 22 no ..... .....
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+ 22 H007 no ..... .....
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+ 16 H002 maybe ....1 .....
+ 8 6 no ..... .....
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+ 3 23 yes ..... ....0
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+ 9 H020 yes ..... ....0
+ 3 H019 no ..... .....
+
+
+
+
+
+ +--H030
+ +-------------------------------------------------------------------------------------------------27
+ ! +--H006
+ !
+ ! +--H035
+ ! +----------------22
+ ! ! +--H007
+ ! !
+-10 ! +--------H012
+ ! +-------------------------------------------------------------------------17 !
+ ! ! ! +----29 +--H021
+ ! ! ! ! ! +-26
+ ! ! ! ! +-16 +--H009
+ ! ! +-----8 !
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+ +-----1 !
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+ ! +-----------6
+ ! +--H026
+ !
+ ! +-----------------------------------------------------------------------H025
+ ! !
+ +----------------------25 +--------------------------------------------------------------------H004
+ ! !
+ ! ! +--H032
+ +--2 +-------------------------------------------------------------24
+ ! ! +--H016
+ ! !
+ ! ! +--H005
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+ ! ! +-----------------------------------------------------H024
+ +----19 !
+ ! ! +--------------------------------------------------H031
+ ! ! !
+ ! ! ! +--------------------------------------------H013
+ +----14 ! !
+ ! ! +-23 +-----------------------------------------H022
+ ! ! ! ! !
+ ! ! ! +-32 +--------------------------------------H029
+ ! ! ! ! !
+ ! ! ! +-20 +-----------------------------------H034
+ +-28 ! ! !
+ ! ! +--4 +--------------------------------H033
+ ! ! ! !
+ ! ! ! ! +-----------------------------H010
+ ! ! +-18 !
+ ! ! ! ! +-----------H003
+ ! ! ! ! +-------------21
+ ! ! +-12 ! ! +--------H011
+ ! ! ! ! +-31
+ ! ! ! ! ! +-----H014
+ +--3 ! ! +-33
+ ! +--5 ! +--H017
+ ! ! +-15
+ ! ! +--H027
+ ! !
+ ! ! +-----------H018
+ ! ! !
+ ! +-------------34 +--H028
+ ! ! +----13
+ ! ! ! +--H001
+ ! +-11
+ ! ! +--H015
+ ! +-----9
+ ! +--H020
+ !
+ +-----------------------------------------------H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 10 no ..... .....
+ 10 27 no ..... .....
+ 27 H030 yes ..... ...1.
+ 27 H006 yes .0... .....
+ 10 1 no ..... .....
+ 1 17 yes ...1. .....
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+ 8 29 yes ..... 0....
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+ 8 6 no ..... .....
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+ 9 H020 yes ..... ....0
+ 3 H019 no ..... .....
+
+
+
+
+
+ +--H030
+ +-------------------------------------------------------------------------------------------------27
+ ! +--H006
+ !
+ ! +--H035
+ ! +----------------22
+ ! ! +--H007
+ ! !
+-10 ! +--------H012
+ ! +-------------------------------------------------------------------------17 !
+ ! ! ! +----29 +--H021
+ ! ! ! ! ! +-26
+ ! ! ! ! +-16 +--H009
+ ! ! +-----8 !
+ ! ! ! +-----H002
+ +-----1 !
+ ! ! +--H023
+ ! +-----------6
+ ! +--H026
+ !
+ ! +-----------------------------------------------------------------------H025
+ ! !
+ +----------------------25 +--------------------------------------------------------------------H004
+ ! !
+ ! ! +--H032
+ +--2 +-------------------------------------------------------------24
+ ! ! +--H016
+ ! !
+ ! ! +--H005
+ +--7 +-------------------------------------------------------30
+ ! ! +--H008
+ ! !
+ ! ! +-----------------------------------------------------H024
+ +----19 !
+ ! ! +--------------------------------------------------H031
+ ! ! !
+ ! ! ! +--------------------------------------------H013
+ +----14 ! !
+ ! ! +-23 +-----------------------------------------H022
+ ! ! ! ! !
+ ! ! ! +-32 +--------------------------------------H029
+ ! ! ! ! !
+ ! ! ! +-20 +-----------------------------------H034
+ +-28 ! ! !
+ ! ! +--4 +--------------------------------H033
+ ! ! ! !
+ ! ! ! ! +-----------------------------H010
+ ! ! +-18 !
+ ! ! ! ! +-----------H011
+ ! ! ! ! +-------------31
+ ! ! +-12 ! ! +--------H003
+ ! ! ! ! +-21
+ ! ! ! ! ! +-----H014
+ +--3 ! ! +-33
+ ! +--5 ! +--H017
+ ! ! +-15
+ ! ! +--H027
+ ! !
+ ! ! +-----------H018
+ ! ! !
+ ! +-------------34 +--H028
+ ! ! +----13
+ ! ! ! +--H001
+ ! +-11
+ ! ! +--H015
+ ! +-----9
+ ! +--H020
+ !
+ +-----------------------------------------------H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 10 no ..... .....
+ 10 27 no ..... .....
+ 27 H030 yes ..... ...1.
+ 27 H006 yes .0... .....
+ 10 1 no ..... .....
+ 1 17 yes ...1. .....
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+ 8 29 yes ..... 0....
+ 29 H012 no ..... .....
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+ 13 H001 no ..... .....
+ 11 9 no ..... .....
+ 9 H015 yes ..... ...0.
+ 9 H020 yes ..... ....0
+ 3 H019 no ..... .....
+
+
+
+
+
+ +--H030
+ +-------------------------------------------------------------------------------------------------27
+ ! +--H006
+ !
+ ! +--H035
+ ! +----------------22
+ ! ! +--H007
+ ! !
+-10 ! +--------H012
+ ! +-------------------------------------------------------------------------17 !
+ ! ! ! +----29 +--H021
+ ! ! ! ! ! +-26
+ ! ! ! ! +-16 +--H009
+ ! ! +-----8 !
+ ! ! ! +-----H002
+ ! ! !
+ +-----1 ! +--H023
+ ! +-----------6
+ ! +--H026
+ !
+ ! +-----------------------------------------------------------------------H025
+ ! !
+ ! ! +--------------------------------------------------------------------H004
+ +----------------------25 !
+ ! ! +--H005
+ ! ! +-30
+ +--2 +----------------------------------------------------------19 +--H008
+ ! ! !
+ ! ! +-----H024
+ ! !
+ ! ! +--H032
+ +-14 +----------------------------------------------------24
+ ! ! +--H016
+ ! !
+ ! ! +--------------------------------------------------H031
+ ! ! !
+ ! ! ! +--------------------------------------------H013
+ +--------7 ! !
+ ! ! +-23 +-----------------------------------------H022
+ ! ! ! ! !
+ ! ! ! +-32 +--------------------------------------H029
+ ! ! ! ! !
+ ! ! ! +-20 +-----------------------------------H034
+ +----28 ! ! !
+ ! ! +--4 +--------------------------------H033
+ ! ! ! !
+ ! ! +-18 +-----------------------------H010
+ ! ! ! !
+ ! ! ! ! +-----H014
+ ! ! +-12 +-------------------33
+ ! ! ! ! ! +--H017
+ ! ! ! ! +-15
+ ! ! ! ! +--H027
+ +--3 +--5
+ ! ! +--H011
+ ! ! +-------------31
+ ! ! ! +--H003
+ ! +-------21
+ ! ! +-----------H018
+ ! ! !
+ ! +----34 +--H028
+ ! ! +----13
+ ! ! ! +--H001
+ ! +-11
+ ! ! +--H015
+ ! +-----9
+ ! +--H020
+ !
+ +-----------------------------------------------H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 10 no ..... .....
+ 10 27 no ..... .....
+ 27 H030 yes ..... ...1.
+ 27 H006 yes .0... .....
+ 10 1 no ..... .....
+ 1 17 yes ...1. .....
+ 17 22 no ..... .....
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+ 17 8 yes ..1.. .....
+ 8 29 yes ..... 0....
+ 29 H012 no ..... .....
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+ 16 H002 maybe ....1 .....
+ 8 6 no ..... .....
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+ 25 H025 no ..... .....
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+ 14 19 no ..... .....
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+ 3 23 yes ..... ....0
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+ 23 32 yes ..... 1....
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+ 20 4 no ..... .....
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+ 5 33 yes ..1.. .....
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+ 33 15 no ..... .....
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+ 5 21 no ..... .....
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+ 21 34 yes ...0. .....
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+ 34 11 yes .0... .....
+ 11 13 no ..... .....
+ 13 H028 yes ..... ..0..
+ 13 H001 no ..... .....
+ 11 9 no ..... .....
+ 9 H015 yes ..... ...0.
+ 9 H020 yes ..... ....0
+ 3 H019 no ..... .....
+
+
+
+
+
+ +--H030
+ +-------------------------------------------------------------------------------------------------27
+ ! +--H006
+ !
+ ! +--H035
+ ! +----------------22
+ ! ! +--H007
+ ! !
+-10 ! +--------H012
+ ! +-------------------------------------------------------------------------17 !
+ ! ! ! +----29 +--H021
+ ! ! ! ! ! +-26
+ ! ! ! ! +-16 +--H009
+ ! ! +-----8 !
+ ! ! ! +-----H002
+ +-----1 !
+ ! ! +--H023
+ ! +-----------6
+ ! +--H026
+ !
+ ! +-----------------------------------------------------------------------H025
+ ! !
+ +----------------------25 +--------------------------------------------------------------------H004
+ ! !
+ ! ! +--H032
+ +--2 +-------------------------------------------------------------24
+ ! ! +--H016
+ ! !
+ ! ! +--H005
+ +--7 +-------------------------------------------------------30
+ ! ! +--H008
+ ! !
+ ! ! +-----------------------------------------------------H024
+ +----19 !
+ ! ! +--------------------------------------------------H031
+ ! ! !
+ ! ! ! +--------------------------------------------H013
+ +----14 ! !
+ ! ! +-23 +-----------------------------------------H022
+ ! ! ! ! !
+ ! ! ! +-32 +--------------------------------------H029
+ ! ! ! ! !
+ ! ! ! +-20 +-----------------------------------H034
+ +-28 ! ! !
+ ! ! +--4 +--------------------------------H033
+ ! ! ! !
+ ! ! ! ! +-----------------------------H010
+ ! ! +-18 !
+ ! ! ! ! +-----------H011
+ ! ! ! ! +-------------31
+ ! ! +-12 ! ! +--------H003
+ ! ! ! ! +-21
+ ! ! ! ! ! +-----H014
+ +--3 ! ! +-33
+ ! +--5 ! +--H017
+ ! ! +-15
+ ! ! +--H027
+ ! !
+ ! ! +-----------H018
+ ! +-------------34
+ ! ! +--------H001
+ ! +-11
+ ! ! +-----H028
+ ! +-13
+ ! ! +--H015
+ ! +--9
+ ! +--H020
+ !
+ +-----------------------------------------------H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 10 no ..... .....
+ 10 27 no ..... .....
+ 27 H030 yes ..... ...1.
+ 27 H006 yes .0... .....
+ 10 1 no ..... .....
+ 1 17 yes ...1. .....
+ 17 22 no ..... .....
+ 22 H035 yes ..... ....0
+ 22 H007 no ..... .....
+ 17 8 yes ..1.. .....
+ 8 29 yes ..... 0....
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+ 16 H002 maybe ....1 .....
+ 8 6 no ..... .....
+ 6 H023 no ..... .....
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+ 1 25 yes 0.... .....
+ 25 H025 no ..... .....
+ 25 2 yes ....1 .....
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+ 2 7 yes ..... 0....
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+ 24 H032 yes ..... .1...
+ 24 H016 no ..... .....
+ 7 19 no ..... .....
+ 19 30 no ..... .....
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+ 3 23 yes ..... ....0
+ 23 H013 no ..... .....
+ 23 32 yes ..... 1....
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+ 20 4 no ..... .....
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+ 18 12 yes 1.... .....
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+ 5 31 no ..... .....
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+ 33 15 no ..... .....
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+ 5 34 yes ...0. .....
+ 34 H018 no ..... .....
+ 34 11 yes .0... .....
+ 11 H001 no ..... .....
+ 11 13 no ..... .....
+ 13 H028 yes ..... ..0..
+ 13 9 no ..... .....
+ 9 H015 yes ..... ...0.
+ 9 H020 yes ..... ....0
+ 3 H019 no ..... .....
+
+
+
+
+
+ +--H030
+ +-------------------------------------------------------------------------------------------------27
+ ! +--H006
+ !
+ ! +--H035
+ ! +----------------22
+ ! ! +--H007
+ ! !
+-10 ! +--------H012
+ ! +-------------------------------------------------------------------------17 !
+ ! ! ! +----29 +--H021
+ ! ! ! ! ! +-26
+ ! ! ! ! +-16 +--H009
+ ! ! +-----8 !
+ ! ! ! +-----H002
+ +-----1 !
+ ! ! +--H023
+ ! +-----------6
+ ! +--H026
+ !
+ ! +-----------------------------------------------------------------------H025
+ ! !
+ +----------------------25 +--------------------------------------------------------------------H004
+ ! !
+ ! ! +--H032
+ +--2 +-------------------------------------------------------------24
+ ! ! +--H016
+ ! !
+ ! ! +--H005
+ +--7 +-------------------------------------------------------30
+ ! ! +--H008
+ ! !
+ ! ! +-----------------------------------------------------H024
+ +----19 !
+ ! ! +--------------------------------------------------H031
+ ! ! !
+ ! ! ! +--------------------------------------------H013
+ +----14 ! !
+ ! ! +-23 +-----------------------------------------H022
+ ! ! ! ! !
+ ! ! ! +-32 +--------------------------------------H029
+ ! ! ! ! !
+ ! ! ! +-20 +-----------------------------------H034
+ +-28 ! ! !
+ ! ! +--4 +--------------------------------H033
+ ! ! ! !
+ ! ! ! ! +-----------------------------H010
+ ! ! +-18 !
+ ! ! ! ! +-----------H011
+ ! ! ! ! +-------------31
+ ! ! +-12 ! ! +--------H003
+ ! ! ! ! +-21
+ ! ! ! ! ! +-----H014
+ +--3 ! ! +-33
+ ! +--5 ! +--H017
+ ! ! +-15
+ ! ! +--H027
+ ! !
+ ! ! +-----------H018
+ ! +-------------34
+ ! ! +--------H028
+ ! +-13
+ ! ! +-----H001
+ ! +-11
+ ! ! +--H015
+ ! +--9
+ ! +--H020
+ !
+ +-----------------------------------------------H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 10 no ..... .....
+ 10 27 no ..... .....
+ 27 H030 yes ..... ...1.
+ 27 H006 yes .0... .....
+ 10 1 no ..... .....
+ 1 17 yes ...1. .....
+ 17 22 no ..... .....
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+ 22 H007 no ..... .....
+ 17 8 yes ..1.. .....
+ 8 29 yes ..... 0....
+ 29 H012 no ..... .....
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+ 16 H002 maybe ....1 .....
+ 8 6 no ..... .....
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+ 1 25 yes 0.... .....
+ 25 H025 no ..... .....
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+ 2 7 yes ..... 0....
+ 7 24 yes ...1. .....
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+ 24 H016 no ..... .....
+ 7 19 no ..... .....
+ 19 30 no ..... .....
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+ 3 23 yes ..... ....0
+ 23 H013 no ..... .....
+ 23 32 yes ..... 1....
+ 32 H022 no ..... .....
+ 32 20 yes ....0 .....
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+ 20 4 no ..... .....
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+ 18 12 yes 1.... .....
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+ 5 31 no ..... .....
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+ 33 15 no ..... .....
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+ 5 34 yes ...0. .....
+ 34 H018 no ..... .....
+ 34 13 yes .0... .....
+ 13 H028 yes ..... ..0..
+ 13 11 no ..... .....
+ 11 H001 no ..... .....
+ 11 9 no ..... .....
+ 9 H015 yes ..... ...0.
+ 9 H020 yes ..... ....0
+ 3 H019 no ..... .....
+
+
+
+
+
+ +-----------------------------------------------------------------------------------------------------H006
+ !
+ ! +--------------------------------------------------------------------------------------------------H030
+ ! !
+-10 ! +--H035
+ ! ! +----------------22
+ ! ! ! +--H007
+ ! ! !
+ +-27 ! +--------H012
+ ! +-------------------------------------------------------------------------17 !
+ ! ! ! +----29 +--H021
+ ! ! ! ! ! +-26
+ ! ! ! ! +-16 +--H009
+ ! ! +-----8 !
+ ! ! ! +-----H002
+ +--1 !
+ ! ! +--H023
+ ! +-----------6
+ ! +--H026
+ !
+ ! +-----------------------------------------------------------------------H025
+ ! !
+ +----------------------25 +--------------------------------------------------------------------H004
+ ! !
+ ! ! +--H032
+ +--2 +-------------------------------------------------------------24
+ ! ! +--H016
+ ! !
+ ! ! +--H005
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+ ! ! +--H008
+ ! !
+ ! ! +-----------------------------------------------------H024
+ +----19 !
+ ! ! +--------------------------------------------------H031
+ ! ! !
+ ! ! ! +--------------------------------------------H013
+ +----14 ! !
+ ! ! +-23 +-----------------------------------------H022
+ ! ! ! ! !
+ ! ! ! +-32 +--------------------------------------H029
+ ! ! ! ! !
+ ! ! ! +-20 +-----------------------------------H034
+ +-28 ! ! !
+ ! ! +--4 +--------------------------------H033
+ ! ! ! !
+ ! ! ! ! +-----------------------------H010
+ ! ! +-18 !
+ ! ! ! ! +-----------H011
+ ! ! ! ! +-------------31
+ ! ! +-12 ! ! +--------H003
+ ! ! ! ! +-21
+ ! ! ! ! ! +-----H014
+ +--3 ! ! +-33
+ ! +--5 ! +--H017
+ ! ! +-15
+ ! ! +--H027
+ ! !
+ ! ! +-----------H018
+ ! +-------------34
+ ! ! +--------H028
+ ! +-13
+ ! ! +-----H001
+ ! +-11
+ ! ! +--H015
+ ! +--9
+ ! +--H020
+ !
+ +-----------------------------------------------H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 10 no ..... .....
+ 10 H006 yes .0... .....
+ 10 27 no ..... .....
+ 27 H030 yes ..... ...1.
+ 27 1 no ..... .....
+ 1 17 yes ...1. .....
+ 17 22 no ..... .....
+ 22 H035 yes ..... ....0
+ 22 H007 no ..... .....
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+ 16 H002 maybe ....1 .....
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+ 6 H023 no ..... .....
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+ 13 11 no ..... .....
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+
+
+
+
+
+ +-----------------------------------------------------------------------------------------------------H030
+ !
+ ! +--------------------------------------------------------------------------------------------------H006
+ ! !
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+ ! ! +----------------22
+ ! ! ! +--H007
+ ! ! !
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+ ! ! ! +----29 +--H021
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+ +--1 !
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+ ! +-----------6
+ ! +--H026
+ !
+ ! +-----------------------------------------------------------------------H025
+ ! !
+ +----------------------25 +--------------------------------------------------------------------H004
+ ! !
+ ! ! +--H032
+ +--2 +-------------------------------------------------------------24
+ ! ! +--H016
+ ! !
+ ! ! +--H005
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+ ! ! +-----------------------------------------------------H024
+ +----19 !
+ ! ! +--------------------------------------------------H031
+ ! ! !
+ ! ! ! +--------------------------------------------H013
+ +----14 ! !
+ ! ! +-23 +-----------------------------------------H022
+ ! ! ! ! !
+ ! ! ! +-32 +--------------------------------------H029
+ ! ! ! ! !
+ ! ! ! +-20 +-----------------------------------H034
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+ ! ! +--4 +--------------------------------H033
+ ! ! ! !
+ ! ! ! ! +-----------------------------H010
+ ! ! +-18 !
+ ! ! ! ! +-----------H011
+ ! ! ! ! +-------------31
+ ! ! +-12 ! ! +--------H003
+ ! ! ! ! +-21
+ ! ! ! ! ! +-----H014
+ +--3 ! ! +-33
+ ! +--5 ! +--H017
+ ! ! +-15
+ ! ! +--H027
+ ! !
+ ! ! +-----------H018
+ ! +-------------34
+ ! ! +--------H028
+ ! +-13
+ ! ! +-----H001
+ ! +-11
+ ! ! +--H015
+ ! +--9
+ ! +--H020
+ !
+ +-----------------------------------------------H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 27 no ..... .....
+ 27 H030 yes ..... ...1.
+ 27 10 no ..... .....
+ 10 H006 yes .0... .....
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+ 1 17 yes ...1. .....
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+
+
+
+
+
+ +--H035
+ +----------------22
+ ! +--H007
+ !
+ ! +--------H012
+ +-------------------------------------------------------------------------------17 !
+ ! ! +----29 +--H021
+ ! ! ! ! +-26
+ ! ! ! +-16 +--H009
+ ! +-----8 !
+ ! ! +-----H002
+ ! !
+--1 ! +--H023
+ ! +-----------6
+ ! +--H026
+ !
+ ! +--H030
+ ! +-------------------------------------------------------------------------27
+ ! ! +--H006
+ ! !
+ +----------------------10 +-----------------------------------------------------------------------H025
+ ! !
+ ! ! +--------------------------------------------------------------------H004
+ ! ! !
+ +----25 ! +--H005
+ ! ! +-30
+ ! ! +----19 +--H008
+ ! ! ! !
+ +--2 +----------------------------------------------------14 +-----H024
+ ! ! !
+ ! ! ! +--H032
+ ! ! +-------24
+ ! ! +--H016
+ ! !
+ ! ! +--------------------------------------------------H031
+ +--7 !
+ ! ! +--------------------------------------------H013
+ ! ! !
+ ! ! +-23 +-----------------------------------------H022
+ ! ! ! ! !
+ ! ! ! +-32 +--H029
+ ! ! ! ! +----------------------------------20
+ ! ! ! ! ! +--H034
+ +-------------28 ! +--4
+ ! ! ! +--------------------------------H033
+ ! ! ! !
+ ! ! +----18 +-----------------------------H010
+ ! ! ! !
+ ! ! ! ! +-----H014
+ ! ! +-12 +-------------------33
+ ! ! ! ! ! +--H017
+ ! ! ! ! +-15
+ ! ! ! ! +--H027
+ +--3 +--5
+ ! ! +--H011
+ ! ! +-------------31
+ ! ! ! +--H003
+ ! +-------21
+ ! ! +-----------H018
+ ! ! !
+ ! +----34 +--H028
+ ! ! +----13
+ ! ! ! +--H001
+ ! +-11
+ ! ! +--H015
+ ! +-----9
+ ! +--H020
+ !
+ +-----------------------------------------------H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 1 no ..... .....
+ 1 17 yes ...1. .....
+ 17 22 no ..... .....
+ 22 H035 yes ..... ....0
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+ 17 8 yes ..1.. .....
+ 8 29 yes ..... 0....
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+ 8 6 no ..... .....
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+ 1 10 no ..... .....
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+ 13 H001 no ..... .....
+ 11 9 no ..... .....
+ 9 H015 yes ..... ...0.
+ 9 H020 yes ..... ....0
+ 3 H019 no ..... .....
+
+
+
+
+
+ +--H035
+ +----------------22
+ ! +--H007
+ !
+ ! +--------H012
+ +-------------------------------------------------------------------------------17 !
+ ! ! +----29 +--H021
+ ! ! ! ! +-26
+ ! ! ! +-16 +--H009
+ ! +-----8 !
+ ! ! +-----H002
+ ! !
+--1 ! +--H023
+ ! +-----------6
+ ! +--H026
+ !
+ ! +--H030
+ ! +-------------------------------------------------------------------------27
+ ! ! +--H006
+ ! !
+ +----------------------10 +-----------------------------------------------------------------------H025
+ ! !
+ ! ! +--------------------------------------------------------------------H004
+ ! ! !
+ +----25 ! +--H005
+ ! ! +-30
+ ! ! +----19 +--H008
+ ! ! ! !
+ +--2 +----------------------------------------------------14 +-----H024
+ ! ! !
+ ! ! ! +--H032
+ ! ! +-------24
+ ! ! +--H016
+ ! !
+ ! ! +--------------------------------------------------H031
+ +--7 !
+ ! ! +--------------------------------------------H013
+ ! ! !
+ ! ! +-23 +-----------------------------------------H022
+ ! ! ! ! !
+ ! ! ! +-32 +--------------------------------------H029
+ ! ! ! ! !
+ ! ! ! +-20 +-----------------------------------H034
+ +-------------28 ! ! !
+ ! ! +--4 +--------------------------------H033
+ ! ! ! !
+ ! ! +-18 +-----------------------------H010
+ ! ! ! !
+ ! ! ! ! +-----H014
+ ! ! +-12 +-------------------33
+ ! ! ! ! ! +--H017
+ ! ! ! ! +-15
+ ! ! ! ! +--H027
+ +--3 +--5
+ ! ! +--H011
+ ! ! +-------------31
+ ! ! ! +--H003
+ ! +-------21
+ ! ! +-----------H018
+ ! ! !
+ ! +----34 +--H028
+ ! ! +----13
+ ! ! ! +--H001
+ ! +-11
+ ! ! +--H015
+ ! +-----9
+ ! +--H020
+ !
+ +-----------------------------------------------H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 1 no ..... .....
+ 1 17 yes ...1. .....
+ 17 22 no ..... .....
+ 22 H035 yes ..... ....0
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+ 17 8 yes ..1.. .....
+ 8 29 yes ..... 0....
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+ 8 6 no ..... .....
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+ 1 10 no ..... .....
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+ 25 H025 no ..... .....
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+ 11 13 no ..... .....
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+ 13 H001 no ..... .....
+ 11 9 no ..... .....
+ 9 H015 yes ..... ...0.
+ 9 H020 yes ..... ....0
+ 3 H019 no ..... .....
+
+
+
+
+
+ +--H035
+ +----------------22
+ ! +--H007
+ !
+ ! +--------H012
+ +-------------------------------------------------------------------------------17 !
+ ! ! +----29 +--H021
+ ! ! ! ! +-26
+ ! ! ! +-16 +--H009
+ ! +-----8 !
+ ! ! +-----H002
+ ! !
+--1 ! +--H023
+ ! +-----------6
+ ! +--H026
+ !
+ ! +--H030
+ ! +-------------------------------------------------------------------------27
+ ! ! +--H006
+ ! !
+ +----------------------10 +-----------------------------------------------------------------------H025
+ ! !
+ ! ! +--------------------------------------------------------------------H004
+ ! ! !
+ +----25 ! +--H005
+ ! ! +-30
+ ! ! +----19 +--H008
+ ! ! ! !
+ +--2 +----------------------------------------------------14 +-----H024
+ ! ! !
+ ! ! ! +--H032
+ ! ! +-------24
+ ! ! +--H016
+ ! !
+ ! ! +--------------------------------------------------H031
+ +--7 !
+ ! ! +--------------------------------------------H013
+ ! ! !
+ ! ! +-23 +-----------------------------------------H022
+ ! ! ! ! !
+ ! ! ! +-32 +--------------------------------------H034
+ ! ! ! ! !
+ ! ! ! +--4 +-----------------------------------H029
+ +-------------28 ! ! !
+ ! ! +-20 +--------------------------------H033
+ ! ! ! !
+ ! ! +-18 +-----------------------------H010
+ ! ! ! !
+ ! ! ! ! +-----H014
+ ! ! +-12 +-------------------33
+ ! ! ! ! ! +--H017
+ ! ! ! ! +-15
+ ! ! ! ! +--H027
+ +--3 +--5
+ ! ! +--H011
+ ! ! +-------------31
+ ! ! ! +--H003
+ ! +-------21
+ ! ! +-----------H018
+ ! ! !
+ ! +----34 +--H028
+ ! ! +----13
+ ! ! ! +--H001
+ ! +-11
+ ! ! +--H015
+ ! +-----9
+ ! +--H020
+ !
+ +-----------------------------------------------H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 1 no ..... .....
+ 1 17 yes ...1. .....
+ 17 22 no ..... .....
+ 22 H035 yes ..... ....0
+ 22 H007 no ..... .....
+ 17 8 yes ..1.. .....
+ 8 29 yes ..... 0....
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+ 8 6 no ..... .....
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+ 6 H026 yes 0.... .....
+ 1 10 no ..... .....
+ 10 27 no ..... .....
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+ 10 25 yes 0.... .....
+ 25 H025 no ..... .....
+ 25 2 yes ....1 .....
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+ 14 19 no ..... .....
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+ 3 23 yes ..... ....0
+ 23 H013 no ..... .....
+ 23 32 yes ..... 1....
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+ 32 4 yes ....0 .....
+ 4 H034 no ..... .....
+ 4 20 no ..... .....
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+ 5 21 no ..... .....
+ 21 31 no ..... .....
+ 31 H011 no ..... .....
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+ 21 34 yes ...0. .....
+ 34 H018 no ..... .....
+ 34 11 yes .0... .....
+ 11 13 no ..... .....
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+ 13 H001 no ..... .....
+ 11 9 no ..... .....
+ 9 H015 yes ..... ...0.
+ 9 H020 yes ..... ....0
+ 3 H019 no ..... .....
+
+
+
+
+
+ +--H035
+ +----------------22
+ ! +--H007
+ !
+ ! +--------H012
+ +-------------------------------------------------------------------------------17 !
+ ! ! +----29 +--H021
+ ! ! ! ! +-26
+ ! ! ! +-16 +--H009
+ ! +-----8 !
+ ! ! +-----H002
+ ! !
+--1 ! +--H023
+ ! +-----------6
+ ! +--H026
+ !
+ ! +--H030
+ ! +-------------------------------------------------------------------------27
+ ! ! +--H006
+ ! !
+ +----------------------10 +-----------------------------------------------------------------------H025
+ ! !
+ ! ! +--------------------------------------------------------------------H004
+ +----25 !
+ ! ! +--H032
+ ! ! +-------------------------------------------------------------24
+ +--2 ! +--H016
+ ! !
+ ! ! +--H005
+ ! ! +-30
+ +--7 +----------------------------------------------------19 +--H008
+ ! ! !
+ ! ! +-----H024
+ ! !
+ ! ! +--------------------------------------------------H031
+ ! ! !
+ +----14 ! +--------------------------------------------H013
+ ! ! !
+ ! ! +-23 +-----------------------------------------H022
+ ! ! ! ! !
+ ! ! ! +-32 +--H029
+ ! ! ! ! +----------------------------------20
+ ! ! ! ! ! +--H034
+ +-------28 ! +--4
+ ! ! ! +--------------------------------H033
+ ! ! ! !
+ ! ! +----18 +-----------------------------H010
+ ! ! ! !
+ ! ! ! ! +-----H014
+ ! ! +-12 +-------------------33
+ ! ! ! ! ! +--H017
+ ! ! ! ! +-15
+ ! ! ! ! +--H027
+ +--3 +--5
+ ! ! +--H011
+ ! ! +-------------31
+ ! ! ! +--H003
+ ! +-------21
+ ! ! +-----------H018
+ ! ! !
+ ! +----34 +--H028
+ ! ! +----13
+ ! ! ! +--H001
+ ! +-11
+ ! ! +--H015
+ ! +-----9
+ ! +--H020
+ !
+ +-----------------------------------------------H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 1 no ..... .....
+ 1 17 yes ...1. .....
+ 17 22 no ..... .....
+ 22 H035 yes ..... ....0
+ 22 H007 no ..... .....
+ 17 8 yes ..1.. .....
+ 8 29 yes ..... 0....
+ 29 H012 no ..... .....
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+ 26 H021 yes 0...1 .....
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+ 8 6 no ..... .....
+ 6 H023 no ..... .....
+ 6 H026 yes 0.... .....
+ 1 10 no ..... .....
+ 10 27 no ..... .....
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+ 10 25 yes 0.... .....
+ 25 H025 no ..... .....
+ 25 2 yes ....1 .....
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+ 2 7 yes ..... 0....
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+ 7 14 no ..... .....
+ 14 19 no ..... .....
+ 19 30 no ..... .....
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+ 14 28 yes ..... ..1..
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+ 3 23 yes ..... ....0
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+ 33 15 no ..... .....
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+ 5 21 no ..... .....
+ 21 31 no ..... .....
+ 31 H011 no ..... .....
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+ 21 34 yes ...0. .....
+ 34 H018 no ..... .....
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+ 11 13 no ..... .....
+ 13 H028 yes ..... ..0..
+ 13 H001 no ..... .....
+ 11 9 no ..... .....
+ 9 H015 yes ..... ...0.
+ 9 H020 yes ..... ....0
+ 3 H019 no ..... .....
+
+
+
+
+
+ +--H035
+ +----------------22
+ ! +--H007
+ !
+ ! +--H021
+ +-------------------------------------------------------------------------------17 +----26
+ ! ! ! +--H009
+ ! ! +----16
+ ! ! ! ! +--H012
+ ! ! ! +----29
+ ! +-----8 +--H002
+ ! !
+--1 ! +--H023
+ ! +-----------6
+ ! +--H026
+ !
+ ! +--H030
+ ! +-------------------------------------------------------------------------27
+ ! ! +--H006
+ ! !
+ +----------------------10 +-----------------------------------------------------------------------H025
+ ! !
+ ! ! +--------------------------------------------------------------------H004
+ +----25 !
+ ! ! +-----H031
+ ! ! +----------------------------------------------------------28
+ +--2 ! ! +--H032
+ ! ! +-24
+ ! ! +--H016
+ ! !
+ ! ! +--H005
+ +--7 +----------------------------------------------------30
+ ! ! +--H008
+ ! !
+ ! ! +--------------------------------------------------H024
+ ! ! !
+ ! ! ! +--------------------------------------------H013
+ +-------19 ! !
+ ! ! +-23 +-----------------------------------------H022
+ ! ! ! ! !
+ ! ! ! +-32 +--H029
+ ! ! ! ! +----------------------------------20
+ ! ! ! ! ! +--H034
+ +----14 ! +--4
+ ! ! ! +--------------------------------H033
+ ! ! ! !
+ ! ! +----18 +-----------------------------H010
+ ! ! ! !
+ ! ! ! ! +--H011
+ ! ! +-12 +----------------------31
+ ! ! ! ! +--H003
+ ! ! ! !
+ ! ! +-21 +-----H014
+ +--3 ! +-------------33
+ ! ! ! ! +--H017
+ ! ! ! +-15
+ ! +-----5 +--H027
+ ! !
+ ! ! +-----------H018
+ ! ! !
+ ! +-------34 +--H028
+ ! ! +----13
+ ! ! ! +--H001
+ ! +-11
+ ! ! +--H015
+ ! +-----9
+ ! +--H020
+ !
+ +-----------------------------------------------H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 1 no ..... .....
+ 1 17 yes ...1. .....
+ 17 22 no ..... .....
+ 22 H035 yes ..... ....0
+ 22 H007 no ..... .....
+ 17 8 yes ..1.. .....
+ 8 16 yes ..... 0....
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+ 8 6 no ..... .....
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+ 1 10 no ..... .....
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+ 9 H015 yes ..... ...0.
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+ 3 H019 no ..... .....
+
+
+
+
+
+ +--H035
+ +----------------22
+ ! +--H007
+ !
+ ! +--------H012
+ +-------------------------------------------------------------------------------17 !
+ ! ! +----29 +--H021
+ ! ! ! ! +-26
+ ! ! ! +-16 +--H009
+ ! +-----8 !
+ ! ! +-----H002
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+--1 ! +--H023
+ ! +-----------6
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+ !
+ ! +--H030
+ ! +-------------------------------------------------------------------------27
+ ! ! +--H006
+ ! !
+ +----------------------10 +-----------------------------------------------------------------------H025
+ ! !
+ ! ! +--------------------------------------------------------------------H004
+ +----25 !
+ ! ! +-----H031
+ ! ! +----------------------------------------------------------28
+ +--2 ! ! +--H032
+ ! ! +-24
+ ! ! +--H016
+ ! !
+ ! ! +--H005
+ +--7 +----------------------------------------------------30
+ ! ! +--H008
+ ! !
+ ! ! +--------------------------------------------------H024
+ ! ! !
+ ! ! ! +--------------------------------------------H013
+ +-------19 ! !
+ ! ! +-23 +-----------------------------------------H022
+ ! ! ! ! !
+ ! ! ! +-32 +--H029
+ ! ! ! ! +----------------------------------20
+ ! ! ! ! ! +--H034
+ +----14 ! +--4
+ ! ! ! +--------------------------------H033
+ ! ! ! !
+ ! ! +----18 +-----------------------------H010
+ ! ! ! !
+ ! ! ! ! +--H011
+ ! ! +-12 +----------------------31
+ ! ! ! ! +--H003
+ ! ! ! !
+ ! ! +-21 +-----H014
+ +--3 ! +-------------33
+ ! ! ! ! +--H017
+ ! ! ! +-15
+ ! +-----5 +--H027
+ ! !
+ ! ! +-----------H018
+ ! ! !
+ ! +-------34 +--H028
+ ! ! +----13
+ ! ! ! +--H001
+ ! +-11
+ ! ! +--H015
+ ! +-----9
+ ! +--H020
+ !
+ +-----------------------------------------------H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 1 no ..... .....
+ 1 17 yes ...1. .....
+ 17 22 no ..... .....
+ 22 H035 yes ..... ....0
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+ 8 6 no ..... .....
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+ 1 10 no ..... .....
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+ 3 23 yes ..... ....0
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+ 9 H020 yes ..... ....0
+ 3 H019 no ..... .....
+
+
+
+
+
+ +--H035
+ +----------------22
+ ! +--H007
+ !
+ ! +-----H012
+ +-------------------------------------------------------------------------------17 +-29
+ ! ! ! ! +--H021
+ ! ! +----16 +-26
+ ! ! ! ! +--H009
+ ! ! ! !
+ ! +-----8 +--------H002
+ ! !
+--1 ! +--H023
+ ! +-----------6
+ ! +--H026
+ !
+ ! +--H030
+ ! +-------------------------------------------------------------------------27
+ ! ! +--H006
+ ! !
+ +----------------------10 +-----------------------------------------------------------------------H025
+ ! !
+ ! ! +--------------------------------------------------------------------H004
+ +----25 !
+ ! ! +-----H031
+ ! ! +----------------------------------------------------------28
+ +--2 ! ! +--H032
+ ! ! +-24
+ ! ! +--H016
+ ! !
+ ! ! +--H005
+ +--7 +----------------------------------------------------30
+ ! ! +--H008
+ ! !
+ ! ! +--------------------------------------------------H024
+ ! ! !
+ ! ! ! +--------------------------------------------H013
+ +-------19 ! !
+ ! ! +-23 +-----------------------------------------H022
+ ! ! ! ! !
+ ! ! ! +-32 +--H029
+ ! ! ! ! +----------------------------------20
+ ! ! ! ! ! +--H034
+ +----14 ! +--4
+ ! ! ! +--------------------------------H033
+ ! ! ! !
+ ! ! +----18 +-----------------------------H010
+ ! ! ! !
+ ! ! ! ! +--H011
+ ! ! +-12 +----------------------31
+ ! ! ! ! +--H003
+ ! ! ! !
+ ! ! +-21 +-----H014
+ +--3 ! +-------------33
+ ! ! ! ! +--H017
+ ! ! ! +-15
+ ! +-----5 +--H027
+ ! !
+ ! ! +-----------H018
+ ! ! !
+ ! +-------34 +--H028
+ ! ! +----13
+ ! ! ! +--H001
+ ! +-11
+ ! ! +--H015
+ ! +-----9
+ ! +--H020
+ !
+ +-----------------------------------------------H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 1 no ..... .....
+ 1 17 yes ...1. .....
+ 17 22 no ..... .....
+ 22 H035 yes ..... ....0
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+ 8 6 no ..... .....
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+ 1 10 no ..... .....
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+ 11 13 no ..... .....
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+ 13 H001 no ..... .....
+ 11 9 no ..... .....
+ 9 H015 yes ..... ...0.
+ 9 H020 yes ..... ....0
+ 3 H019 no ..... .....
+
+
+
+
+
+ +--H035
+ +----------------22
+ ! +--H007
+ !
+ ! +--H021
+ +-------------------------------------------------------------------------------17 +----26
+ ! ! ! +--H009
+ ! ! +----16
+ ! ! ! ! +--H012
+ ! ! ! +----29
+ ! +-----8 +--H002
+--1 !
+ ! ! +--H023
+ ! +-----------6
+ ! +--H026
+ !
+ ! +-----------------------------------------------------------------------------H030
+ ! !
+ +----------------------27 +--------------------------------------------------------------------------H006
+ ! !
+ +-10 +-----------------------------------------------------------------------H025
+ ! !
+ ! ! +--------------------------------------------------------------------H004
+ +-25 !
+ ! ! +-----H031
+ ! ! +----------------------------------------------------------28
+ +--2 ! ! +--H032
+ ! ! +-24
+ ! ! +--H016
+ ! !
+ ! ! +--H005
+ +--7 +----------------------------------------------------30
+ ! ! +--H008
+ ! !
+ ! ! +--------------------------------------------------H024
+ ! ! !
+ ! ! ! +--------------------------------------------H013
+ +-------19 ! !
+ ! ! +-23 +-----------------------------------------H022
+ ! ! ! ! !
+ ! ! ! +-32 +--H029
+ ! ! ! ! +----------------------------------20
+ ! ! ! ! ! +--H034
+ +----14 ! +--4
+ ! ! ! +--------------------------------H033
+ ! ! ! !
+ ! ! +----18 +-----------------------------H010
+ ! ! ! !
+ ! ! ! ! +--H011
+ ! ! +-12 +----------------------31
+ ! ! ! ! +--H003
+ ! ! ! !
+ ! ! +-21 +-----H014
+ +--3 ! +-------------33
+ ! ! ! ! +--H017
+ ! ! ! +-15
+ ! +-----5 +--H027
+ ! !
+ ! ! +-----------H018
+ ! ! !
+ ! +-------34 +--H028
+ ! ! +----13
+ ! ! ! +--H001
+ ! +-11
+ ! ! +--H015
+ ! +-----9
+ ! +--H020
+ !
+ +-----------------------------------------------H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 1 no ..... .....
+ 1 17 yes ...1. .....
+ 17 22 no ..... .....
+ 22 H035 yes ..... ....0
+ 22 H007 no ..... .....
+ 17 8 yes ..1.. .....
+ 8 16 yes ..... 0....
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+ 16 29 no ..... .....
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+ 8 6 no ..... .....
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+ 1 27 no ..... .....
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+ 10 25 yes 0.... .....
+ 25 H025 no ..... .....
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+ 21 31 no ..... .....
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+ 11 13 no ..... .....
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+ 13 H001 no ..... .....
+ 11 9 no ..... .....
+ 9 H015 yes ..... ...0.
+ 9 H020 yes ..... ....0
+ 3 H019 no ..... .....
+
+
+
+
+
+ +--H035
+ +----------------22
+ ! +--H007
+ !
+ ! +--H021
+ +-------------------------------------------------------------------------------17 +----26
+ ! ! ! +--H009
+ ! ! +----16
+ ! ! ! ! +--H012
+ ! ! ! +----29
+ ! +-----8 +--H002
+--1 !
+ ! ! +--H023
+ ! +-----------6
+ ! +--H026
+ !
+ ! +-----------------------------------------------------------------------------H006
+ ! !
+ +----------------------10 +--------------------------------------------------------------------------H030
+ ! !
+ +-27 +-----------------------------------------------------------------------H025
+ ! !
+ ! ! +--------------------------------------------------------------------H004
+ +-25 !
+ ! ! +-----H031
+ ! ! +----------------------------------------------------------28
+ +--2 ! ! +--H032
+ ! ! +-24
+ ! ! +--H016
+ ! !
+ ! ! +--H005
+ +--7 +----------------------------------------------------30
+ ! ! +--H008
+ ! !
+ ! ! +--------------------------------------------------H024
+ ! ! !
+ ! ! ! +--------------------------------------------H013
+ +-------19 ! !
+ ! ! +-23 +-----------------------------------------H022
+ ! ! ! ! !
+ ! ! ! +-32 +--H029
+ ! ! ! ! +----------------------------------20
+ ! ! ! ! ! +--H034
+ +----14 ! +--4
+ ! ! ! +--------------------------------H033
+ ! ! ! !
+ ! ! +----18 +-----------------------------H010
+ ! ! ! !
+ ! ! ! ! +--H011
+ ! ! +-12 +----------------------31
+ ! ! ! ! +--H003
+ ! ! ! !
+ ! ! +-21 +-----H014
+ +--3 ! +-------------33
+ ! ! ! ! +--H017
+ ! ! ! +-15
+ ! +-----5 +--H027
+ ! !
+ ! ! +-----------H018
+ ! ! !
+ ! +-------34 +--H028
+ ! ! +----13
+ ! ! ! +--H001
+ ! +-11
+ ! ! +--H015
+ ! +-----9
+ ! +--H020
+ !
+ +-----------------------------------------------H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 1 no ..... .....
+ 1 17 yes ...1. .....
+ 17 22 no ..... .....
+ 22 H035 yes ..... ....0
+ 22 H007 no ..... .....
+ 17 8 yes ..1.. .....
+ 8 16 yes ..... 0....
+ 16 26 yes ..... ..1..
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+ 26 H009 no ..... .....
+ 16 29 no ..... .....
+ 29 H012 no ..... .....
+ 29 H002 yes ....1 .....
+ 8 6 no ..... .....
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+ 1 10 no ..... .....
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+ 10 27 no ..... .....
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+ 27 25 yes 0.... .....
+ 25 H025 no ..... .....
+ 25 2 yes ....1 .....
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+ 2 7 yes ..... 0....
+ 7 28 no ..... .....
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+ 7 19 no ..... .....
+ 19 30 no ..... .....
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+ 14 3 yes ..... .11..
+ 3 23 yes ..... ....0
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+ 23 32 yes ..... 1....
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+ 21 31 no ..... .....
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+ 33 15 no ..... .....
+ 15 H017 no ..... .....
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+ 5 34 yes ...0. .....
+ 34 H018 no ..... .....
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+ 11 13 no ..... .....
+ 13 H028 yes ..... ..0..
+ 13 H001 no ..... .....
+ 11 9 no ..... .....
+ 9 H015 yes ..... ...0.
+ 9 H020 yes ..... ....0
+ 3 H019 no ..... .....
+
+
+
+
+
+ +--H035
+ +----------------22
+ ! +--H007
+ !
+ ! +--------H012
+ +-------------------------------------------------------------------------------17 !
+ ! ! +----29 +--H021
+ ! ! ! ! +-26
+ ! ! ! +-16 +--H009
+ ! +-----8 !
+ ! ! +-----H002
+ ! !
+--1 ! +--H023
+ ! +-----------6
+ ! +--H026
+ !
+ ! +--H030
+ ! +-------------------------------------------------------------------------27
+ ! ! +--H006
+ ! !
+ +----------------------10 +-----------------------------------------------------------------------H025
+ ! !
+ ! ! +--------------------------------------------------------------------H004
+ +----25 !
+ ! ! +--H005
+ ! ! +-30
+ +--2 +----------------------------------------------------------19 +--H008
+ ! ! !
+ ! ! +-----H024
+ ! !
+ ! ! +--H032
+ +-14 +----------------------------------------------------24
+ ! ! +--H016
+ ! !
+ ! ! +--------------------------------------------------H031
+ ! ! !
+ ! ! ! +--------------------------------------------H013
+ +--------7 ! !
+ ! ! +-23 +-----------------------------------------H022
+ ! ! ! ! !
+ ! ! ! +-32 +--H029
+ ! ! ! ! +----------------------------------20
+ ! ! ! ! ! +--H034
+ +----28 ! +--4
+ ! ! ! +--------------------------------H033
+ ! ! ! !
+ ! ! +----18 +-----------------------------H010
+ ! ! ! !
+ ! ! ! ! +--H011
+ ! ! +-12 +----------------------31
+ ! ! ! ! +--H003
+ ! ! ! !
+ ! ! +-21 +-----H014
+ +--3 ! +-------------33
+ ! ! ! ! +--H017
+ ! ! ! +-15
+ ! +-----5 +--H027
+ ! !
+ ! ! +-----------H018
+ ! ! !
+ ! +-------34 +--H028
+ ! ! +----13
+ ! ! ! +--H001
+ ! +-11
+ ! ! +--H015
+ ! +-----9
+ ! +--H020
+ !
+ +-----------------------------------------------H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 1 no ..... .....
+ 1 17 yes ...1. .....
+ 17 22 no ..... .....
+ 22 H035 yes ..... ....0
+ 22 H007 no ..... .....
+ 17 8 yes ..1.. .....
+ 8 29 yes ..... 0....
+ 29 H012 no ..... .....
+ 29 16 maybe ....? .....
+ 16 26 yes ..... ..1..
+ 26 H021 yes 0...1 .....
+ 26 H009 maybe ....0 .....
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+ 8 6 no ..... .....
+ 6 H023 no ..... .....
+ 6 H026 yes 0.... .....
+ 1 10 no ..... .....
+ 10 27 no ..... .....
+ 27 H030 yes ..... ...1.
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+ 10 25 yes 0.... .....
+ 25 H025 no ..... .....
+ 25 2 yes ....1 .....
+ 2 H004 no ..... .....
+ 2 14 yes ..... 0....
+ 14 19 no ..... .....
+ 19 30 no ..... .....
+ 30 H005 yes ..... ....0
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+ 14 7 no ..... .....
+ 7 24 yes ...1. .....
+ 24 H032 yes ..... .1...
+ 24 H016 no ..... .....
+ 7 28 yes ..... ..1..
+ 28 H031 no ..... .....
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+ 3 23 yes ..... ....0
+ 23 H013 no ..... .....
+ 23 32 yes ..... 1....
+ 32 H022 no ..... .....
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+ 4 20 no ..... .....
+ 20 H029 yes ..... ....1
+ 20 H034 no ..... .....
+ 4 18 yes ...1. .....
+ 18 H033 no ..... .....
+ 18 12 yes 1.... .....
+ 12 H010 no ..... .....
+ 12 21 yes ..... ....1
+ 21 31 no ..... .....
+ 31 H011 no ..... .....
+ 31 H003 yes ....1 .....
+ 21 5 no ..... .....
+ 5 33 yes ..1.. .....
+ 33 H014 yes 0.... .....
+ 33 15 no ..... .....
+ 15 H017 no ..... .....
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+ 5 34 yes ...0. .....
+ 34 H018 no ..... .....
+ 34 11 yes .0... .....
+ 11 13 no ..... .....
+ 13 H028 yes ..... ..0..
+ 13 H001 no ..... .....
+ 11 9 no ..... .....
+ 9 H015 yes ..... ...0.
+ 9 H020 yes ..... ....0
+ 3 H019 no ..... .....
+
+
+
+
+
+ +--H035
+ +----------------22
+ ! +--H007
+ !
+ ! +--------H012
+ +-------------------------------------------------------------------------------17 !
+ ! ! +----29 +--H021
+ ! ! ! ! +-26
+ ! ! ! +-16 +--H009
+ ! +-----8 !
+ ! ! +-----H002
+ ! !
+--1 ! +--H023
+ ! +-----------6
+ ! +--H026
+ !
+ ! +--H030
+ ! +-------------------------------------------------------------------------27
+ ! ! +--H006
+ ! !
+ +----------------------10 +-----------------------------------------------------------------------H025
+ ! !
+ ! ! +--------------------------------------------------------------------H004
+ +----25 !
+ ! ! +--H005
+ ! ! +-30
+ +--2 +----------------------------------------------------------19 +--H008
+ ! ! !
+ ! ! +-----H024
+ ! !
+ ! ! +--H032
+ +-14 +----------------------------------------------------24
+ ! ! +--H016
+ ! !
+ ! ! +--------------------------------------------------H031
+ ! ! !
+ ! ! ! +--------------------------------------------H013
+ +--------7 ! !
+ ! ! +-23 +-----------------------------------------H022
+ ! ! ! ! !
+ ! ! ! +-32 +--H029
+ ! ! ! ! +----------------------------------20
+ ! ! ! ! ! +--H034
+ +----28 ! +--4
+ ! ! ! +--------------------------------H033
+ ! ! ! !
+ ! ! +----18 +-----------------------------H010
+ ! ! ! !
+ ! ! ! ! +-----H014
+ ! ! +-12 +-------------------33
+ ! ! ! ! ! +--H017
+ ! ! ! ! +-15
+ ! ! ! ! +--H027
+ +--3 +--5
+ ! ! +--H011
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+ ! +-------21
+ ! ! +-----------H018
+ ! ! !
+ ! +----34 +--H028
+ ! ! +----13
+ ! ! ! +--H001
+ ! +-11
+ ! ! +--H015
+ ! +-----9
+ ! +--H020
+ !
+ +-----------------------------------------------H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 1 no ..... .....
+ 1 17 yes ...1. .....
+ 17 22 no ..... .....
+ 22 H035 yes ..... ....0
+ 22 H007 no ..... .....
+ 17 8 yes ..1.. .....
+ 8 29 yes ..... 0....
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+ 8 6 no ..... .....
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+ 1 10 no ..... .....
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+ 13 H001 no ..... .....
+ 11 9 no ..... .....
+ 9 H015 yes ..... ...0.
+ 9 H020 yes ..... ....0
+ 3 H019 no ..... .....
+
+
+
+
+
+ +--H035
+ +----------------22
+ ! +--H007
+ !
+ ! +--------H012
+ +-------------------------------------------------------------------------------17 !
+ ! ! +----29 +--H021
+ ! ! ! ! +-26
+ ! ! ! +-16 +--H009
+ ! +-----8 !
+ ! ! +-----H002
+ ! !
+--1 ! +--H023
+ ! +-----------6
+ ! +--H026
+ !
+ ! +--H030
+ ! +-------------------------------------------------------------------------27
+ ! ! +--H006
+ ! !
+ +----------------------10 +-----------------------------------------------------------------------H025
+ ! !
+ ! ! +--------------------------------------------------------------------H004
+ +----25 !
+ ! ! +--H005
+ ! ! +-30
+ +--2 +----------------------------------------------------------19 +--H008
+ ! ! !
+ ! ! +-----H024
+ ! !
+ ! ! +--H032
+ +-14 +----------------------------------------------------24
+ ! ! +--H016
+ ! !
+ ! ! +--------------------------------------------------H031
+ ! ! !
+ ! ! ! +--------------------------------------------H013
+ +--------7 ! !
+ ! ! +-23 +-----------------------------------------H022
+ ! ! ! ! !
+ ! ! ! ! ! +--H029
+ ! ! ! +-32 +----------------------------------20
+ ! ! ! ! ! +--H034
+ +----28 ! ! !
+ ! ! +--4 +--------------------------------H033
+ ! ! ! !
+ ! ! ! ! +-----------------------------H010
+ ! ! +----18 !
+ ! ! ! ! +--H011
+ ! ! ! ! +-------31
+ ! ! +-12 ! +--H003
+ ! ! ! +-------------21
+ ! ! ! ! ! +-----H014
+ +--3 ! ! +----33
+ ! ! ! ! +--H017
+ ! +--5 +-15
+ ! ! +--H027
+ ! !
+ ! ! +-----------H018
+ ! ! !
+ ! +-------------34 +--H028
+ ! ! +----13
+ ! ! ! +--H001
+ ! +-11
+ ! ! +--H015
+ ! +-----9
+ ! +--H020
+ !
+ +-----------------------------------------------H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 1 no ..... .....
+ 1 17 yes ...1. .....
+ 17 22 no ..... .....
+ 22 H035 yes ..... ....0
+ 22 H007 no ..... .....
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+ 8 29 yes ..... 0....
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+ 8 6 no ..... .....
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+ 1 10 no ..... .....
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+ 14 19 no ..... .....
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+ 3 23 yes ..... ....0
+ 23 H013 no ..... .....
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+ 33 15 no ..... .....
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+ 34 H018 no ..... .....
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+ 13 H001 no ..... .....
+ 11 9 no ..... .....
+ 9 H015 yes ..... ...0.
+ 9 H020 yes ..... ....0
+ 3 H019 no ..... .....
+
+
+
+
+
+ +--H030
+ +----------------------27
+ ! +--H006
+ !
+ ! +--H035
+ +-------------------------------------------------------------------------10 +----------------22
+ ! ! ! +--H007
+ ! ! !
+ ! ! ! +--------H012
+ ! +----17 !
+ ! ! +----29 +--H021
+ ! ! ! ! +-26
+ ! ! ! +-16 +--H009
+ ! +-----8 !
+--1 ! +-----H002
+ ! !
+ ! ! +--H023
+ ! +-----------6
+ ! +--H026
+ !
+ ! +-----------------------------------------------------------------------H025
+ ! !
+ ! ! +--------------------------------------------------------------------H004
+ ! ! !
+ +----------------------------25 ! +--H005
+ ! ! +-30
+ ! ! +----19 +--H008
+ ! ! ! !
+ +--2 +----------------------------------------------------14 +-----H024
+ ! ! !
+ ! ! ! +--H032
+ ! ! +-------24
+ ! ! +--H016
+ ! !
+ ! ! +--------------------------------------------------H031
+ +--7 !
+ ! ! +--------------------------------------------H013
+ ! ! !
+ ! ! +-23 +-----------------------------------------H022
+ ! ! ! ! !
+ ! ! ! +-32 +--------------------------------------H029
+ ! ! ! ! !
+ ! ! ! +-20 +-----------------------------------H034
+ +-------------28 ! ! !
+ ! ! +--4 +--------------------------------H033
+ ! ! ! !
+ ! ! +-18 +-----------------------------H010
+ ! ! ! !
+ ! ! ! ! +-----H014
+ ! ! +-12 +-------------------33
+ ! ! ! ! ! +--H017
+ ! ! ! ! +-15
+ ! ! ! ! +--H027
+ +--3 +--5
+ ! ! +--H011
+ ! ! +-------------31
+ ! ! ! +--H003
+ ! +-------21
+ ! ! +-----------H018
+ ! ! !
+ ! +----34 +--H028
+ ! ! +----13
+ ! ! ! +--H001
+ ! +-11
+ ! ! +--H015
+ ! +-----9
+ ! +--H020
+ !
+ +-----------------------------------------------H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 1 no ..... .....
+ 1 10 no ..... .....
+ 10 27 no ..... .....
+ 27 H030 yes ..... ...1.
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+ 7 14 no ..... .....
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+ 5 21 no ..... .....
+ 21 31 no ..... .....
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+ 11 9 no ..... .....
+ 9 H015 yes ..... ...0.
+ 9 H020 yes ..... ....0
+ 3 H019 no ..... .....
+
+
+
+
+
+ +--------------------------H030
+ !
+ +-------------------------------------------------------------------------27 +-----------------------H006
+ ! ! !
+ ! ! ! +--H035
+ ! +-10 +----------------22
+ ! ! ! +--H007
+ ! ! !
+ ! ! ! +--------H012
+ ! +-17 !
+ ! ! +----29 +--H021
+ ! ! ! ! +-26
+ ! ! ! +-16 +--H009
+--1 +-----8 !
+ ! ! +-----H002
+ ! !
+ ! ! +--H023
+ ! +-----------6
+ ! +--H026
+ !
+ ! +-----------------------------------------------------------------------H025
+ ! !
+ ! ! +--------------------------------------------------------------------H004
+ ! ! !
+ +----------------------------25 ! +--H005
+ ! ! +-30
+ ! ! +----19 +--H008
+ ! ! ! !
+ +--2 +----------------------------------------------------14 +-----H024
+ ! ! !
+ ! ! ! +--H032
+ ! ! +-------24
+ ! ! +--H016
+ ! !
+ ! ! +--------------------------------------------------H031
+ +--7 !
+ ! ! +--------------------------------------------H013
+ ! ! !
+ ! ! +-23 +-----------------------------------------H022
+ ! ! ! ! !
+ ! ! ! +-32 +--------------------------------------H029
+ ! ! ! ! !
+ ! ! ! +-20 +-----------------------------------H034
+ +-------------28 ! ! !
+ ! ! +--4 +--------------------------------H033
+ ! ! ! !
+ ! ! +-18 +-----------------------------H010
+ ! ! ! !
+ ! ! ! ! +-----H014
+ ! ! +-12 +-------------------33
+ ! ! ! ! ! +--H017
+ ! ! ! ! +-15
+ ! ! ! ! +--H027
+ +--3 +--5
+ ! ! +--H011
+ ! ! +-------------31
+ ! ! ! +--H003
+ ! +-------21
+ ! ! +-----------H018
+ ! ! !
+ ! +----34 +--H028
+ ! ! +----13
+ ! ! ! +--H001
+ ! +-11
+ ! ! +--H015
+ ! +-----9
+ ! +--H020
+ !
+ +-----------------------------------------------H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 1 no ..... .....
+ 1 27 no ..... .....
+ 27 H030 yes ..... ...1.
+ 27 10 no ..... .....
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+ 8 6 no ..... .....
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+ 25 H025 no ..... .....
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+ 2 7 yes ..... 0....
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+ 14 19 no ..... .....
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+ 3 23 yes ..... ....0
+ 23 H013 no ..... .....
+ 23 32 yes ..... 1....
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+ 20 4 no ..... .....
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+ 5 21 no ..... .....
+ 21 31 no ..... .....
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+ 11 13 no ..... .....
+ 13 H028 yes ..... ..0..
+ 13 H001 no ..... .....
+ 11 9 no ..... .....
+ 9 H015 yes ..... ...0.
+ 9 H020 yes ..... ....0
+ 3 H019 no ..... .....
+
+
+
+
+
+ +--------------------------H006
+ !
+ +-------------------------------------------------------------------------10 +-----------------------H030
+ ! ! !
+ ! ! ! +--H035
+ ! +-27 +----------------22
+ ! ! ! +--H007
+ ! ! !
+ ! ! ! +--------H012
+ ! +-17 !
+ ! ! +----29 +--H021
+ ! ! ! ! +-26
+ ! ! ! +-16 +--H009
+--1 +-----8 !
+ ! ! +-----H002
+ ! !
+ ! ! +--H023
+ ! +-----------6
+ ! +--H026
+ !
+ ! +-----------------------------------------------------------------------H025
+ ! !
+ ! ! +--------------------------------------------------------------------H004
+ ! ! !
+ +----------------------------25 ! +--H005
+ ! ! +-30
+ ! ! +----19 +--H008
+ ! ! ! !
+ +--2 +----------------------------------------------------14 +-----H024
+ ! ! !
+ ! ! ! +--H032
+ ! ! +-------24
+ ! ! +--H016
+ ! !
+ ! ! +--------------------------------------------------H031
+ +--7 !
+ ! ! +--------------------------------------------H013
+ ! ! !
+ ! ! +-23 +-----------------------------------------H022
+ ! ! ! ! !
+ ! ! ! +-32 +--------------------------------------H029
+ ! ! ! ! !
+ ! ! ! +-20 +-----------------------------------H034
+ +-------------28 ! ! !
+ ! ! +--4 +--------------------------------H033
+ ! ! ! !
+ ! ! +-18 +-----------------------------H010
+ ! ! ! !
+ ! ! ! ! +-----H014
+ ! ! +-12 +-------------------33
+ ! ! ! ! ! +--H017
+ ! ! ! ! +-15
+ ! ! ! ! +--H027
+ +--3 +--5
+ ! ! +--H011
+ ! ! +-------------31
+ ! ! ! +--H003
+ ! +-------21
+ ! ! +-----------H018
+ ! ! !
+ ! +----34 +--H028
+ ! ! +----13
+ ! ! ! +--H001
+ ! +-11
+ ! ! +--H015
+ ! +-----9
+ ! +--H020
+ !
+ +-----------------------------------------------H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 1 no ..... .....
+ 1 10 no ..... .....
+ 10 H006 yes .0... .....
+ 10 27 no ..... .....
+ 27 H030 yes ..... ...1.
+ 27 17 yes ...1. .....
+ 17 22 no ..... .....
+ 22 H035 yes ..... ....0
+ 22 H007 no ..... .....
+ 17 8 yes ..1.. .....
+ 8 29 yes ..... 0....
+ 29 H012 no ..... .....
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+ 8 6 no ..... .....
+ 6 H023 no ..... .....
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+ 1 25 yes 0.... .....
+ 25 H025 no ..... .....
+ 25 2 yes ....1 .....
+ 2 H004 no ..... .....
+ 2 7 yes ..... 0....
+ 7 14 no ..... .....
+ 14 19 no ..... .....
+ 19 30 no ..... .....
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+ 7 28 yes ..... ..1..
+ 28 H031 no ..... .....
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+ 3 23 yes ..... ....0
+ 23 H013 no ..... .....
+ 23 32 yes ..... 1....
+ 32 H022 no ..... .....
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+ 20 4 no ..... .....
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+ 33 15 no ..... .....
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+ 5 21 no ..... .....
+ 21 31 no ..... .....
+ 31 H011 no ..... .....
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+ 21 34 yes ...0. .....
+ 34 H018 no ..... .....
+ 34 11 yes .0... .....
+ 11 13 no ..... .....
+ 13 H028 yes ..... ..0..
+ 13 H001 no ..... .....
+ 11 9 no ..... .....
+ 9 H015 yes ..... ...0.
+ 9 H020 yes ..... ....0
+ 3 H019 no ..... .....
+
+
+
+
+
+ +--H030
+ +----------------------27
+ ! +--H006
+ !
+ ! +--H035
+ +-------------------------------------------------------------------------10 +----------------22
+ ! ! ! +--H007
+ ! ! !
+ ! ! ! +--H021
+ ! +----17 +----26
+ ! ! ! +--H009
+ ! ! +----16
+ ! ! ! ! +--H012
+ ! ! ! +----29
+--1 +-----8 +--H002
+ ! !
+ ! ! +--H023
+ ! +-----------6
+ ! +--H026
+ !
+ ! +-----------------------------------------------------------------------H025
+ ! !
+ ! ! +--------------------------------------------------------------------H004
+ +----------------------------25 !
+ ! ! +-----H031
+ ! ! +----------------------------------------------------------28
+ +--2 ! ! +--H032
+ ! ! +-24
+ ! ! +--H016
+ ! !
+ ! ! +--H005
+ +--7 +----------------------------------------------------30
+ ! ! +--H008
+ ! !
+ ! ! +--------------------------------------------------H024
+ ! ! !
+ ! ! ! +--------------------------------------------H013
+ +-------19 ! !
+ ! ! +-23 +-----------------------------------------H022
+ ! ! ! ! !
+ ! ! ! +-32 +--H029
+ ! ! ! ! +----------------------------------20
+ ! ! ! ! ! +--H034
+ +----14 ! +--4
+ ! ! ! +--------------------------------H033
+ ! ! ! !
+ ! ! +----18 +-----------------------------H010
+ ! ! ! !
+ ! ! ! ! +--H011
+ ! ! +-12 +----------------------31
+ ! ! ! ! +--H003
+ ! ! ! !
+ ! ! +-21 +-----H014
+ +--3 ! +-------------33
+ ! ! ! ! +--H017
+ ! ! ! +-15
+ ! +-----5 +--H027
+ ! !
+ ! ! +-----------H018
+ ! ! !
+ ! +-------34 +--H028
+ ! ! +----13
+ ! ! ! +--H001
+ ! +-11
+ ! ! +--H015
+ ! +-----9
+ ! +--H020
+ !
+ +-----------------------------------------------H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 1 no ..... .....
+ 1 10 no ..... .....
+ 10 27 no ..... .....
+ 27 H030 yes ..... ...1.
+ 27 H006 yes .0... .....
+ 10 17 yes ...1. .....
+ 17 22 no ..... .....
+ 22 H035 yes ..... ....0
+ 22 H007 no ..... .....
+ 17 8 yes ..1.. .....
+ 8 16 yes ..... 0....
+ 16 26 yes ..... ..1..
+ 26 H021 yes 0...1 .....
+ 26 H009 no ..... .....
+ 16 29 no ..... .....
+ 29 H012 no ..... .....
+ 29 H002 yes ....1 .....
+ 8 6 no ..... .....
+ 6 H023 no ..... .....
+ 6 H026 yes 0.... .....
+ 1 25 yes 0.... .....
+ 25 H025 no ..... .....
+ 25 2 yes ....1 .....
+ 2 H004 no ..... .....
+ 2 7 yes ..... 0....
+ 7 28 no ..... .....
+ 28 H031 yes ..... ..1..
+ 28 24 yes ...1. .....
+ 24 H032 yes ..... .1...
+ 24 H016 no ..... .....
+ 7 19 no ..... .....
+ 19 30 no ..... .....
+ 30 H005 yes ..... ....0
+ 30 H008 no ..... .....
+ 19 14 yes ..... ...1.
+ 14 H024 no ..... .....
+ 14 3 yes ..... .11..
+ 3 23 yes ..... ....0
+ 23 H013 no ..... .....
+ 23 32 yes ..... 1....
+ 32 H022 no ..... .....
+ 32 4 yes ....0 .....
+ 4 20 no ..... .....
+ 20 H029 yes ..... ....1
+ 20 H034 no ..... .....
+ 4 18 yes ...1. .....
+ 18 H033 no ..... .....
+ 18 12 yes 1.... .....
+ 12 H010 no ..... .....
+ 12 21 yes ..... ....1
+ 21 31 no ..... .....
+ 31 H011 no ..... .....
+ 31 H003 yes ....1 .....
+ 21 5 no ..... .....
+ 5 33 yes ..1.. .....
+ 33 H014 yes 0.... .....
+ 33 15 no ..... .....
+ 15 H017 no ..... .....
+ 15 H027 yes ..... 0...0
+ 5 34 yes ...0. .....
+ 34 H018 no ..... .....
+ 34 11 yes .0... .....
+ 11 13 no ..... .....
+ 13 H028 yes ..... ..0..
+ 13 H001 no ..... .....
+ 11 9 no ..... .....
+ 9 H015 yes ..... ...0.
+ 9 H020 yes ..... ....0
+ 3 H019 no ..... .....
+
+
+
+
+
+ +--H030
+ +----------------------27
+ ! +--H006
+ !
+ +-------------------------------------------------------------------------10 +--------------------H007
+ ! ! !
+ ! ! ! +-----------------H035
+ ! +----17 !
+ ! ! ! +--H021
+ ! ! ! +----26
+ ! +-22 ! +--H009
+ ! ! +----16
+ ! ! ! ! +--H012
+--1 ! ! +----29
+ ! +--8 +--H002
+ ! !
+ ! ! +--H023
+ ! +-----------6
+ ! +--H026
+ !
+ ! +-----------------------------------------------------------------------H025
+ ! !
+ ! ! +--------------------------------------------------------------------H004
+ +----------------------------25 !
+ ! ! +-----H031
+ ! ! +----------------------------------------------------------28
+ +--2 ! ! +--H032
+ ! ! +-24
+ ! ! +--H016
+ ! !
+ ! ! +--H005
+ +--7 +----------------------------------------------------30
+ ! ! +--H008
+ ! !
+ ! ! +--------------------------------------------------H024
+ ! ! !
+ ! ! ! +--------------------------------------------H013
+ +-------19 ! !
+ ! ! +-23 +-----------------------------------------H022
+ ! ! ! ! !
+ ! ! ! +-32 +--H029
+ ! ! ! ! +----------------------------------20
+ ! ! ! ! ! +--H034
+ +----14 ! +--4
+ ! ! ! +--------------------------------H033
+ ! ! ! !
+ ! ! +----18 +-----------------------------H010
+ ! ! ! !
+ ! ! ! ! +--H011
+ ! ! +-12 +----------------------31
+ ! ! ! ! +--H003
+ ! ! ! !
+ ! ! +-21 +-----H014
+ +--3 ! +-------------33
+ ! ! ! ! +--H017
+ ! ! ! +-15
+ ! +-----5 +--H027
+ ! !
+ ! ! +-----------H018
+ ! ! !
+ ! +-------34 +--H028
+ ! ! +----13
+ ! ! ! +--H001
+ ! +-11
+ ! ! +--H015
+ ! +-----9
+ ! +--H020
+ !
+ +-----------------------------------------------H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 1 no ..... .....
+ 1 10 no ..... .....
+ 10 27 no ..... .....
+ 27 H030 yes ..... ...1.
+ 27 H006 yes .0... .....
+ 10 17 yes ...1. .....
+ 17 H007 no ..... .....
+ 17 22 no ..... .....
+ 22 H035 yes ..... ....0
+ 22 8 yes ..1.. .....
+ 8 16 yes ..... 0....
+ 16 26 yes ..... ..1..
+ 26 H021 yes 0...1 .....
+ 26 H009 no ..... .....
+ 16 29 no ..... .....
+ 29 H012 no ..... .....
+ 29 H002 yes ....1 .....
+ 8 6 no ..... .....
+ 6 H023 no ..... .....
+ 6 H026 yes 0.... .....
+ 1 25 yes 0.... .....
+ 25 H025 no ..... .....
+ 25 2 yes ....1 .....
+ 2 H004 no ..... .....
+ 2 7 yes ..... 0....
+ 7 28 no ..... .....
+ 28 H031 yes ..... ..1..
+ 28 24 yes ...1. .....
+ 24 H032 yes ..... .1...
+ 24 H016 no ..... .....
+ 7 19 no ..... .....
+ 19 30 no ..... .....
+ 30 H005 yes ..... ....0
+ 30 H008 no ..... .....
+ 19 14 yes ..... ...1.
+ 14 H024 no ..... .....
+ 14 3 yes ..... .11..
+ 3 23 yes ..... ....0
+ 23 H013 no ..... .....
+ 23 32 yes ..... 1....
+ 32 H022 no ..... .....
+ 32 4 yes ....0 .....
+ 4 20 no ..... .....
+ 20 H029 yes ..... ....1
+ 20 H034 no ..... .....
+ 4 18 yes ...1. .....
+ 18 H033 no ..... .....
+ 18 12 yes 1.... .....
+ 12 H010 no ..... .....
+ 12 21 yes ..... ....1
+ 21 31 no ..... .....
+ 31 H011 no ..... .....
+ 31 H003 yes ....1 .....
+ 21 5 no ..... .....
+ 5 33 yes ..1.. .....
+ 33 H014 yes 0.... .....
+ 33 15 no ..... .....
+ 15 H017 no ..... .....
+ 15 H027 yes ..... 0...0
+ 5 34 yes ...0. .....
+ 34 H018 no ..... .....
+ 34 11 yes .0... .....
+ 11 13 no ..... .....
+ 13 H028 yes ..... ..0..
+ 13 H001 no ..... .....
+ 11 9 no ..... .....
+ 9 H015 yes ..... ...0.
+ 9 H020 yes ..... ....0
+ 3 H019 no ..... .....
+
+
+
+
+
+ +--H030
+ +----------------------27
+ ! +--H006
+ !
+ +-------------------------------------------------------------------------10 +--------------------H035
+ ! ! !
+ ! ! ! +-----------------H007
+ ! +----22 !
+ ! ! ! +--H021
+ ! ! ! +----26
+ ! +-17 ! +--H009
+ ! ! +----16
+ ! ! ! ! +--H012
+--1 ! ! +----29
+ ! +--8 +--H002
+ ! !
+ ! ! +--H023
+ ! +-----------6
+ ! +--H026
+ !
+ ! +-----------------------------------------------------------------------H025
+ ! !
+ ! ! +--------------------------------------------------------------------H004
+ +----------------------------25 !
+ ! ! +-----H031
+ ! ! +----------------------------------------------------------28
+ +--2 ! ! +--H032
+ ! ! +-24
+ ! ! +--H016
+ ! !
+ ! ! +--H005
+ +--7 +----------------------------------------------------30
+ ! ! +--H008
+ ! !
+ ! ! +--------------------------------------------------H024
+ ! ! !
+ ! ! ! +--------------------------------------------H013
+ +-------19 ! !
+ ! ! +-23 +-----------------------------------------H022
+ ! ! ! ! !
+ ! ! ! +-32 +--H029
+ ! ! ! ! +----------------------------------20
+ ! ! ! ! ! +--H034
+ +----14 ! +--4
+ ! ! ! +--------------------------------H033
+ ! ! ! !
+ ! ! +----18 +-----------------------------H010
+ ! ! ! !
+ ! ! ! ! +--H011
+ ! ! +-12 +----------------------31
+ ! ! ! ! +--H003
+ ! ! ! !
+ ! ! +-21 +-----H014
+ +--3 ! +-------------33
+ ! ! ! ! +--H017
+ ! ! ! +-15
+ ! +-----5 +--H027
+ ! !
+ ! ! +-----------H018
+ ! ! !
+ ! +-------34 +--H028
+ ! ! +----13
+ ! ! ! +--H001
+ ! +-11
+ ! ! +--H015
+ ! +-----9
+ ! +--H020
+ !
+ +-----------------------------------------------H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 1 no ..... .....
+ 1 10 no ..... .....
+ 10 27 no ..... .....
+ 27 H030 yes ..... ...1.
+ 27 H006 yes .0... .....
+ 10 22 yes ...1. .....
+ 22 H035 yes ..... ....0
+ 22 17 no ..... .....
+ 17 H007 no ..... .....
+ 17 8 yes ..1.. .....
+ 8 16 yes ..... 0....
+ 16 26 yes ..... ..1..
+ 26 H021 yes 0...1 .....
+ 26 H009 no ..... .....
+ 16 29 no ..... .....
+ 29 H012 no ..... .....
+ 29 H002 yes ....1 .....
+ 8 6 no ..... .....
+ 6 H023 no ..... .....
+ 6 H026 yes 0.... .....
+ 1 25 yes 0.... .....
+ 25 H025 no ..... .....
+ 25 2 yes ....1 .....
+ 2 H004 no ..... .....
+ 2 7 yes ..... 0....
+ 7 28 no ..... .....
+ 28 H031 yes ..... ..1..
+ 28 24 yes ...1. .....
+ 24 H032 yes ..... .1...
+ 24 H016 no ..... .....
+ 7 19 no ..... .....
+ 19 30 no ..... .....
+ 30 H005 yes ..... ....0
+ 30 H008 no ..... .....
+ 19 14 yes ..... ...1.
+ 14 H024 no ..... .....
+ 14 3 yes ..... .11..
+ 3 23 yes ..... ....0
+ 23 H013 no ..... .....
+ 23 32 yes ..... 1....
+ 32 H022 no ..... .....
+ 32 4 yes ....0 .....
+ 4 20 no ..... .....
+ 20 H029 yes ..... ....1
+ 20 H034 no ..... .....
+ 4 18 yes ...1. .....
+ 18 H033 no ..... .....
+ 18 12 yes 1.... .....
+ 12 H010 no ..... .....
+ 12 21 yes ..... ....1
+ 21 31 no ..... .....
+ 31 H011 no ..... .....
+ 31 H003 yes ....1 .....
+ 21 5 no ..... .....
+ 5 33 yes ..1.. .....
+ 33 H014 yes 0.... .....
+ 33 15 no ..... .....
+ 15 H017 no ..... .....
+ 15 H027 yes ..... 0...0
+ 5 34 yes ...0. .....
+ 34 H018 no ..... .....
+ 34 11 yes .0... .....
+ 11 13 no ..... .....
+ 13 H028 yes ..... ..0..
+ 13 H001 no ..... .....
+ 11 9 no ..... .....
+ 9 H015 yes ..... ...0.
+ 9 H020 yes ..... ....0
+ 3 H019 no ..... .....
+
+
+
+
+
+ +-----------------------------------------------------------------------------------------------------H030
+ !
+ ! +--------------------------------------------------------------------------------------------------H006
+ ! !
+-27 ! +--------------------H035
+ ! ! !
+ ! ! +-------------------------------------------------------------------------22 +-----------------H007
+ ! ! ! ! !
+ +-10 ! +-17 +--------------H023
+ ! ! ! !
+ ! ! ! ! +--------H012
+ ! ! +--6 !
+ ! ! ! +-29 +--H021
+ ! ! ! ! ! +-26
+ +--1 ! ! +-16 +--H009
+ ! +--8 !
+ ! ! +-----H002
+ ! !
+ ! +-----------H026
+ !
+ ! +-----------------------------------------------------------------------H025
+ ! !
+ +----------------------25 +--------------------------------------------------------------------H004
+ ! !
+ ! ! +--H005
+ +--2 +-------------------------------------------------------------30
+ ! ! +--H008
+ ! !
+ +-19 +-----------------------------------------------------------H024
+ ! !
+ ! ! +--H032
+ ! ! +----------------------------------------------------24
+ +----14 ! +--H016
+ ! !
+ ! ! +--------------------------------------------------H031
+ ! ! !
+ ! ! ! +--------------------------------------------H013
+ +--7 ! !
+ ! ! ! +-----------------------------------------H022
+ ! ! ! !
+ ! ! +-23 ! +-----------------H033
+ ! ! ! ! ! +-18
+ ! ! ! ! ! ! ! +--------------H010
+ ! ! ! ! ! ! +-12
+ +----28 ! ! ! ! ! +-----------H011
+ ! ! +-32 ! +-31
+ ! ! ! ! ! +--------H003
+ ! ! ! +-----------------5 +-21
+ ! ! ! ! ! ! +-----H014
+ ! ! ! ! ! +-33
+ ! ! ! ! ! ! +--H017
+ ! ! ! ! ! +-15
+ ! ! +--4 ! +--H027
+ ! ! ! !
+ +--3 ! +--------------------H034
+ ! !
+ ! ! +--------------H029
+ ! +----------------------20
+ ! ! +-----------H018
+ ! +-34
+ ! ! +--------H028
+ ! +-13
+ ! ! +-----H001
+ ! +-11
+ ! ! +--H015
+ ! +--9
+ ! +--H020
+ !
+ +-----------------------------------------------H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 27 no ..... .....
+ 27 H030 yes ..... ...1.
+ 27 10 no ..... .....
+ 10 H006 yes .0... .....
+ 10 1 no ..... .....
+ 1 22 yes ...1. .....
+ 22 H035 yes ..... ....0
+ 22 17 no ..... .....
+ 17 H007 no ..... .....
+ 17 6 yes ..1.. .....
+ 6 H023 no ..... .....
+ 6 8 no ..... .....
+ 8 29 yes ..... 0....
+ 29 H012 no ..... .....
+ 29 16 maybe ....? .....
+ 16 26 yes ..... ..1..
+ 26 H021 yes 0...1 .....
+ 26 H009 maybe ....0 .....
+ 16 H002 maybe ....1 .....
+ 8 H026 yes 0.... .....
+ 1 25 yes 0.... .....
+ 25 H025 no ..... .....
+ 25 2 yes ....1 .....
+ 2 H004 no ..... .....
+ 2 19 yes ..... 0....
+ 19 30 no ..... .....
+ 30 H005 yes ..... ....0
+ 30 H008 no ..... .....
+ 19 14 no ..... .....
+ 14 H024 yes ..... ...1.
+ 14 7 no ..... .....
+ 7 24 yes ...1. .....
+ 24 H032 yes ..... .1...
+ 24 H016 no ..... .....
+ 7 28 yes ..... ..1..
+ 28 H031 no ..... .....
+ 28 3 yes ..... .1.1.
+ 3 23 yes ..... ....0
+ 23 H013 no ..... .....
+ 23 32 yes ..... 1....
+ 32 H022 no ..... .....
+ 32 4 yes ....0 .....
+ 4 5 no ..... .....
+ 5 18 yes ...1. .....
+ 18 H033 no ..... .....
+ 18 12 yes 1.... .....
+ 12 H010 no ..... .....
+ 12 31 yes ..... ....1
+ 31 H011 no ..... .....
+ 31 21 no ..... .....
+ 21 H003 yes ....1 .....
+ 21 33 yes ..1.. .....
+ 33 H014 yes 0.... .....
+ 33 15 no ..... .....
+ 15 H017 no ..... .....
+ 15 H027 yes ..... 0...0
+ 5 H034 no ..... .....
+ 4 20 yes ..... ....1
+ 20 H029 no ..... .....
+ 20 34 yes 1.... .....
+ 34 H018 no ..... .....
+ 34 13 yes .0... .....
+ 13 H028 yes ..... ..0..
+ 13 11 no ..... .....
+ 11 H001 no ..... .....
+ 11 9 no ..... .....
+ 9 H015 yes ..... ...0.
+ 9 H020 yes ..... ....0
+ 3 H019 no ..... .....
+
+
diff --git a/trunk/test/phylip/ancestor_absent/association/outtree b/trunk/test/phylip/ancestor_absent/association/outtree
new file mode 100644
index 0000000000000000000000000000000000000000..b51eab6ce6f875cafddddbce85d18926576cb586
--- /dev/null
+++ b/trunk/test/phylip/ancestor_absent/association/outtree
@@ -0,0 +1,400 @@
+((H030,H006),(((H035,H007),(H023,(((H021,H009),(H012,H002)),H026))),
+(H025,(H004,((H005,H008),((H031,(H032,H016)),(H024,((H013,(H022,((H029,
+H034),(H033,(H010,((H011,H003),((H014,(H017,H027)),(H018,((H028,H001),
+(H015,H020)))))))))),H019))))))))[0.0100];
+(H030,(H006,(((H035,H007),(H023,((H012,((H021,H009),H002)),H026))),
+(H025,(H004,((H005,H008),((H024,(H032,H016)),(H031,((H013,(H022,(H029,
+(H034,(H033,(H010,((H011,(H003,(H014,(H017,H027)))),(H018,(H028,(H001,
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+(H030,(H006,(((H035,H007),(H023,((H012,((H021,H009),H002)),H026))),
+(H025,(H004,(((H005,H008),(H032,H016)),(H024,(H031,((H013,(H022,(H029,
+(H034,(H033,(H010,((H011,(H003,(H014,(H017,H027)))),(H018,(H028,(H001,
+(H015,H020))))))))))),H019)))))))))[0.0100];
+(H030,(H006,(((H035,H007),(H023,((H012,((H021,H009),H002)),H026))),
+(H025,(H004,((H005,(H008,(H032,H016))),(H024,(H031,((H013,(H022,(H029,
+(H034,(H033,(H010,((H011,(H003,(H014,(H017,H027)))),(H018,(H028,(H001,
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+(H030,(H006,(((H035,H007),(H023,((H012,((H021,H009),H002)),H026))),
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+(H030,(H006,(((H035,H007),(H023,((H012,((H021,H009),H002)),H026))),
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+(H030,(H006,(((H035,H007),(H023,((H012,((H021,H009),H002)),H026))),
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+(H034,(H033,(H010,(H003,((H017,(H014,H027)),(H011,(H018,(H028,(H001,
+(H015,H020))))))))))))),H019))))))))))[0.0100];
+((H030,H006),((H035,(H007,(H023,(((H021,H009),(H012,H002)),H026)))),
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+(H030,(H006,((H035,(H007,(H023,((H012,((H021,H009),H002)),H026)))),
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+(((H035,H007),((H012,((H021,H009),H002)),(H023,H026))),((H030,H006),
+(H025,(H004,((((H005,H008),H024),(H032,H016)),(H031,((H013,(H022,(H029,
+(H034,(H033,(H010,((H014,(H017,H027)),((H011,H003),(H018,((H028,H001),
+(H015,H020))))))))))),H019)))))))[0.0100];
+(((H035,H007),((H012,((H021,H009),H002)),(H023,H026))),((H030,H006),
+(H025,(H004,((((H005,H008),H024),(H032,H016)),(H031,((H013,(H022,(H034,
+(H029,(H033,(H010,((H014,(H017,H027)),((H011,H003),(H018,((H028,H001),
+(H015,H020))))))))))),H019)))))))[0.0100];
+(((H035,H007),((H012,((H021,H009),H002)),(H023,H026))),((H030,H006),
+(H025,(H004,((H032,H016),(((H005,H008),H024),(H031,((H013,(H022,((H029,
+H034),(H033,(H010,((H014,(H017,H027)),((H011,H003),(H018,((H028,H001),
+(H015,H020)))))))))),H019))))))))[0.0100];
+(((H035,H007),(((H021,H009),(H012,H002)),(H023,H026))),((H030,H006),
+(H025,(H004,((H031,(H032,H016)),((H005,H008),(H024,((H013,(H022,((H029,
+H034),(H033,(H010,((H011,H003),((H014,(H017,H027)),(H018,((H028,H001),
+(H015,H020)))))))))),H019))))))))[0.0100];
+(((H035,H007),((H012,((H021,H009),H002)),(H023,H026))),((H030,H006),
+(H025,(H004,((H031,(H032,H016)),((H005,H008),(H024,((H013,(H022,((H029,
+H034),(H033,(H010,((H011,H003),((H014,(H017,H027)),(H018,((H028,H001),
+(H015,H020)))))))))),H019))))))))[0.0100];
+(((H035,H007),(((H012,(H021,H009)),H002),(H023,H026))),((H030,H006),
+(H025,(H004,((H031,(H032,H016)),((H005,H008),(H024,((H013,(H022,((H029,
+H034),(H033,(H010,((H011,H003),((H014,(H017,H027)),(H018,((H028,H001),
+(H015,H020)))))))))),H019))))))))[0.0100];
+(((H035,H007),(((H021,H009),(H012,H002)),(H023,H026))),(H030,(H006,
+(H025,(H004,((H031,(H032,H016)),((H005,H008),(H024,((H013,(H022,((H029,
+H034),(H033,(H010,((H011,H003),((H014,(H017,H027)),(H018,((H028,H001),
+(H015,H020)))))))))),H019)))))))))[0.0100];
+(((H035,H007),(((H021,H009),(H012,H002)),(H023,H026))),(H006,(H030,
+(H025,(H004,((H031,(H032,H016)),((H005,H008),(H024,((H013,(H022,((H029,
+H034),(H033,(H010,((H011,H003),((H014,(H017,H027)),(H018,((H028,H001),
+(H015,H020)))))))))),H019)))))))))[0.0100];
+(((H035,H007),((H012,((H021,H009),H002)),(H023,H026))),((H030,H006),
+(H025,(H004,(((H005,H008),H024),((H032,H016),(H031,((H013,(H022,((H029,
+H034),(H033,(H010,((H011,H003),((H014,(H017,H027)),(H018,((H028,H001),
+(H015,H020)))))))))),H019))))))))[0.0100];
+(((H035,H007),((H012,((H021,H009),H002)),(H023,H026))),((H030,H006),
+(H025,(H004,(((H005,H008),H024),((H032,H016),(H031,((H013,(H022,((H029,
+H034),(H033,(H010,((H014,(H017,H027)),((H011,H003),(H018,((H028,H001),
+(H015,H020)))))))))),H019))))))))[0.0100];
+(((H035,H007),((H012,((H021,H009),H002)),(H023,H026))),((H030,H006),
+(H025,(H004,(((H005,H008),H024),((H032,H016),(H031,((H013,(H022,((H029,
+H034),(H033,(H010,(((H011,H003),(H014,(H017,H027))),(H018,((H028,H001),
+(H015,H020))))))))),H019))))))))[0.0100];
+(((H030,H006),((H035,H007),((H012,((H021,H009),H002)),(H023,H026)))),
+(H025,(H004,((((H005,H008),H024),(H032,H016)),(H031,((H013,(H022,(H029,
+(H034,(H033,(H010,((H014,(H017,H027)),((H011,H003),(H018,((H028,H001),
+(H015,H020))))))))))),H019))))))[0.0100];
+((H030,(H006,((H035,H007),((H012,((H021,H009),H002)),(H023,H026))))),
+(H025,(H004,((((H005,H008),H024),(H032,H016)),(H031,((H013,(H022,(H029,
+(H034,(H033,(H010,((H014,(H017,H027)),((H011,H003),(H018,((H028,H001),
+(H015,H020))))))))))),H019))))))[0.0100];
+((H006,(H030,((H035,H007),((H012,((H021,H009),H002)),(H023,H026))))),
+(H025,(H004,((((H005,H008),H024),(H032,H016)),(H031,((H013,(H022,(H029,
+(H034,(H033,(H010,((H014,(H017,H027)),((H011,H003),(H018,((H028,H001),
+(H015,H020))))))))))),H019))))))[0.0100];
+(((H030,H006),((H035,H007),(((H021,H009),(H012,H002)),(H023,H026)))),
+(H025,(H004,((H031,(H032,H016)),((H005,H008),(H024,((H013,(H022,((H029,
+H034),(H033,(H010,((H011,H003),((H014,(H017,H027)),(H018,((H028,H001),
+(H015,H020)))))))))),H019)))))))[0.0100];
+(((H030,H006),(H007,(H035,(((H021,H009),(H012,H002)),(H023,H026))))),
+(H025,(H004,((H031,(H032,H016)),((H005,H008),(H024,((H013,(H022,((H029,
+H034),(H033,(H010,((H011,H003),((H014,(H017,H027)),(H018,((H028,H001),
+(H015,H020)))))))))),H019)))))))[0.0100];
+(((H030,H006),(H035,(H007,(((H021,H009),(H012,H002)),(H023,H026))))),
+(H025,(H004,((H031,(H032,H016)),((H005,H008),(H024,((H013,(H022,((H029,
+H034),(H033,(H010,((H011,H003),((H014,(H017,H027)),(H018,((H028,H001),
+(H015,H020)))))))))),H019)))))))[0.0100];
+(H030,(H006,((H035,(H007,(H023,((H012,((H021,H009),H002)),H026)))),
+(H025,(H004,((H005,H008),(H024,((H032,H016),(H031,((H013,(H022,(((H033,
+(H010,(H011,(H003,(H014,(H017,H027)))))),H034),(H029,(H018,(H028,(H001,
+(H015,H020)))))))),H019))))))))))[0.0100];
diff --git a/trunk/test/phylip/ancestor_absent/association/run_altree b/trunk/test/phylip/ancestor_absent/association/run_altree
new file mode 100755
index 0000000000000000000000000000000000000000..1397fa317556db984fcd747444524c0abaa94077
--- /dev/null
+++ b/trunk/test/phylip/ancestor_absent/association/run_altree
@@ -0,0 +1,13 @@
+#!/bin/sh -x
+
+#To run phylip options a and 5 were selected
+phylip mix
+
+# to run the association test.
+# The ancestral sequence is not in the phylip output file, that's why we
+# have to specify it with the --anc-seq option
+# Only one permutation is performed...
+
+../../../../altree -i outfile -j nb_cas_controls.txt \
+ -a -t SNP -p phylip -r 1 \
+ --tree-to-analyse 1 --anc-seq 1100010001 -o 1_trio_phy.asso
diff --git a/trunk/test/phylip/ancestor_absent/association/trio.phy b/trunk/test/phylip/ancestor_absent/association/trio.phy
new file mode 100644
index 0000000000000000000000000000000000000000..95eb59a0df4a3fd2d07593061aae1e6a277edac2
--- /dev/null
+++ b/trunk/test/phylip/ancestor_absent/association/trio.phy
@@ -0,0 +1,36 @@
+ 35 10
+H019 0100101111
+H026 0111010001
+H004 0100110001
+H020 1000011110
+H034 0100011110
+H027 1111001110
+H023 1111010001
+H016 0101100001
+H002 1111100001
+H015 1000011101
+H006 1000010001
+H001 1000011111
+H010 1101011110
+H028 1000011011
+H024 0100100011
+H017 1111011111
+H009 1111000101
+H007 1101010001
+H033 0101011110
+H008 0100100001
+H029 0100011111
+H003 1101111111
+H035 1101010000
+H013 0100101110
+H032 0101101001
+H025 0100010001
+H021 0111100101
+H030 1100010011
+H031 0100100101
+H012 1111000001
+H005 0100100000
+H011 1101011111
+H022 0100111110
+H014 0111011111
+H018 1100011111
diff --git a/trunk/test/phylip/ancestor_present/association/1_trio_phy.asso b/trunk/test/phylip/ancestor_present/association/1_trio_phy.asso
new file mode 100644
index 0000000000000000000000000000000000000000..8f421679c3df6e84012521dda3892e713799add6
--- /dev/null
+++ b/trunk/test/phylip/ancestor_present/association/1_trio_phy.asso
@@ -0,0 +1,120 @@
+
+ /----* H035 case/control:1/0
+ | Site: 10 Sens: 1-->0
+ /----* 22 case/control:26/36
+ | | Site: 4 Sens: 0-->1
+ | \----* H007 case/control:25/36
+ | /----* H025 case/control:2/3
+ |----* 25 case/control:75/51
+ | | Site: 1 Sens: 1-->0
+ | | /----* H004 case/control:11/2
+ | \----* 2 case/control:73/48
+ | | Site: 5 Sens: 0-->1
+ | | /----* H005 case/control:2/2
+ | | | Site: 10 Sens: 1-->0
+ | | |----* H031 case/control:1/0
+ | | | Site: 8 Sens: 0-->1
+ | | |----* H008 case/control:28/19
+ | \----* 19+(30+(28))+(14) case/control:62/46
+ | | Site: 6 Sens: 1-->0
+ | |----* H024 case/control:1/0
+ | | Site: 9 Sens: 0-->1
+ | | /----* H032 case/control:0/1
+ | | | Site: 7 Sens: 0-->1
+ | | |----* H016 case/control:2/2
+ | \----* 7+(24) case/control:30/25
+ | | Site: 4 Sens: 0-->1
+ | | /----* H021 case/control:11/2
+ | | | Site: 8 Sens: 0-->1
+ | \----* 26 case/control:28/22
+ | | Site: 3 Sens: 0-->1
+ | | /----* H002 case/control:9/3
+ | \----* 8 case/control:17/20
+ | | Site: 1 Sens: 0-->1
+ | | /----* H012 case/control:1/2
+ | | |----* H009 case/control:5/10
+ | | | Site: 8 Sens: 0-->1
+ | \----* 16+(29) case/control:8/17
+ | | Site: 5 Sens: 1-->0
+ | | /----* H023 case/control:1/5
+ | \----* 6 case/control:2/5
+ | | Site: 6 Sens: 0-->1
+ | \----* H026 case/control:1/0
+ | Site: 1 Sens: 1-->0
+ |----* ANCE case/control:4/4
+-----* 1+(17)+(27+(35)) case/control:204/204
+ |
+ | [0] ddl=4 chi2=7.12 p_value_chi2=0.105
+ | [1] ddl=7 chi2=10.66 p_value_chi2=0.131
+ | [2] ddl=9 chi2=19.12 p_value_chi2=0.01
+ | [3] ddl=16 chi2=24.70 p_value_chi2=0.05
+ | [4] ddl=20 chi2=40.53 p_value_chi2=0.002
+ | [5] ddl=25 chi2=54.97 p_value_chi2=0
+ | [6] ddl=30 chi2=63.51 p_value_chi2=0
+ | [7] ddl=33 chi2=64.80 p_value_chi2=0
+ | [8] ddl=35 chi2=68.34 p_value_chi2=0
+ |----* H030 case/control:1/1
+ | Site: 9 Sens: 0-->1
+ | /----* H006 case/control:23/19
+ \----* 10 case/control:98/112
+ | Site: 2 Sens: 1-->0
+ | /----* H028 case/control:4/0
+ \----* 13 case/control:75/93
+ | Site: 7 Sens: 0-->1
+ | Site: 9 Sens: 0-->1
+ | /----* H015 case/control:2/6
+ | | Site: 9 Sens: 1-->0
+ | |----* H001 case/control:24/39
+ \----* 3+(9+(11)) case/control:71/93
+ | Site: 8 Sens: 0-->1
+ |----* H020 case/control:5/9
+ | Site: 10 Sens: 1-->0
+ | /----* H018 case/control:2/2
+ | | /----* H011 case/control:3/8
+ | | |----* H003 case/control:2/0
+ | | | Site: 5 Sens: 0-->1
+ | |----* 21+(31)+(15) case/control:9/25
+ | | | Site: 4 Sens: 0-->1
+ | | | /----* H014 case/control:2/3
+ | | | | Site: 1 Sens: 1-->0
+ | | |----* 33 case/control:2/11
+ | | | | Site: 3 Sens: 0-->1
+ | | | \----* H017 case/control:0/8
+ | | | /----* H010 case/control:1/3
+ | | | |----* H033 case/control:0/1
+ | | | | Site: 1 Sens: 1-->0
+ | | \----* 12+(18) case/control:2/6
+ | | | Site: 10 Sens: 1-->0
+ | | \----* H027 case/control:1/2
+ | | Site: 6 Sens: 1-->0
+ | | Site: 3 Sens: 0-->1
+ \----* 5+(34) case/control:40/39
+ | Site: 2 Sens: 0-->1
+ | /----* H029 case/control:1/3
+ \----* 20 case/control:29/12
+ | Site: 1 Sens: 1-->0
+ | /----* H034 case/control:1/0
+ \----* 4 case/control:28/9
+ | Site: 10 Sens: 1-->0
+ | /----* H022 case/control:9/1
+ \----* 32 case/control:27/9
+ | Site: 5 Sens: 0-->1
+ | /----* H013 case/control:15/5
+ \----* 23 case/control:18/8
+ | Site: 6 Sens: 1-->0
+ \----* H019 case/control:3/3
+ Site: 10 Sens: 0-->1
+
+ Number of permutation: 1
+
+p_val for each level:
+level 1 p-value (non corrected) 0
+level 2 p-value (non corrected) 0
+level 3 p-value (non corrected) 0
+level 4 p-value (non corrected) 0
+level 5 p-value (non corrected) 0
+level 6 p-value (non corrected) 0
+level 7 p-value (non corrected) 0
+level 8 p-value (non corrected) 0
+level 9 p-value (non corrected) 0
+corrected minimal p_value in the tree: 0
diff --git a/trunk/test/phylip/ancestor_present/association/ancestors b/trunk/test/phylip/ancestor_present/association/ancestors
new file mode 100644
index 0000000000000000000000000000000000000000..87645f6980318330f9c7d6064ff44d8c8da00797
--- /dev/null
+++ b/trunk/test/phylip/ancestor_present/association/ancestors
@@ -0,0 +1 @@
+11000100011
diff --git a/trunk/test/phylip/ancestor_present/association/nb_cas_controls.txt b/trunk/test/phylip/ancestor_present/association/nb_cas_controls.txt
new file mode 100644
index 0000000000000000000000000000000000000000..28bff2994e73e6a9e556fa9be1ddf13baa3c3484
--- /dev/null
+++ b/trunk/test/phylip/ancestor_present/association/nb_cas_controls.txt
@@ -0,0 +1,36 @@
+H019 m003 c003
+H026 m001 c000
+H004 m011 c002
+H020 m005 c009
+H034 m001 c000
+H027 m001 c002
+H023 m001 c005
+H016 m002 c002
+H002 m009 c003
+H015 m002 c006
+H006 m023 c019
+H001 m024 c039
+H010 m001 c003
+H028 m004 c000
+H024 m001 c000
+H017 m000 c008
+H009 m005 c010
+H007 m025 c036
+H033 m000 c001
+H008 m028 c019
+H029 m001 c003
+H003 m002 c000
+H035 m001 c000
+H013 m015 c005
+H032 m000 c001
+H025 m002 c003
+H021 m011 c002
+H030 m001 c001
+H031 m001 c000
+H012 m001 c002
+H005 m002 c002
+H011 m003 c008
+H022 m009 c001
+H014 m002 c003
+H018 m002 c002
+ANCE m004 c004
diff --git a/trunk/test/phylip/ancestor_present/association/outfile b/trunk/test/phylip/ancestor_present/association/outfile
new file mode 100644
index 0000000000000000000000000000000000000000..e8a122b44ab3bf32e1e553b107d29a0fc422ac0f
--- /dev/null
+++ b/trunk/test/phylip/ancestor_present/association/outfile
@@ -0,0 +1,15410 @@
+
+Mixed parsimony algorithm, version 3.63
+
+Wagner parsimony method
+
+
+
+
+ 100 trees in all found
+
+
+
+
+ +--H035
+ +----------------------------------------22
+ ! +--H007
+ +----------------------------------------------------------17
+ ! ! +--------------------------------------H025
+ ! ! !
+ ! +----25 +-----------------------------------H004
+ ! ! !
+ ! ! ! +-----H005
+ ! +--2 +-------------------------30
+ ! ! ! ! +--H031
+ ! ! ! +-28
+ ! +-19 +--H008
+ ! !
+ ! ! +-----------------------H024
+ ! ! !
+ ! +-------14 +--H032
+ ! ! +----------------24
+ ! ! ! +--H016
+--1 +--7
+ ! ! +--------------H021
+ ! ! !
+ ! +----26 +-----------H002
+ ! ! !
+ ! +--8 +--H012
+ ! ! +----29
+ ! ! ! +--H009
+ ! +-16
+ ! ! +--H023
+ ! +-----6
+ ! +--H026
+ !
+ ! +--ANCE
+ ! +----------------------------------------------------35
+ ! ! +--H030
+ ! !
+ +----------------------------------------------27 +--------------------------------------------------H006
+ ! !
+ ! ! +-----------------------------------------------H028
+ +----10 !
+ ! ! +-----H015
+ ! ! +--------------------------------------9
+ ! ! ! ! +--H001
+ +-13 ! +-11
+ ! ! +--H020
+ ! !
+ ! ! +--------------------H018
+ ! ! !
+ +--3 ! +--H011
+ ! +-------------34 +-------------31
+ ! ! ! ! +--H003
+ ! ! ! !
+ ! ! +-21 +--H014
+ ! ! ! +-------33
+ ! ! ! ! +--H017
+ ! ! +----15
+ +--------5 ! +-----H010
+ ! +----12
+ ! ! +--H033
+ ! +-18
+ ! +--H027
+ !
+ ! +-----------H029
+ +----------------------20
+ ! +--------H034
+ +--4
+ ! +-----H022
+ +-32
+ ! +--H013
+ +-23
+ +--H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 1 no ..... .....
+ 1 17 no ..... .....
+ 17 22 yes ...1. .....
+ 22 H035 yes ..... ....0
+ 22 H007 no ..... .....
+ 17 25 yes 0.... .....
+ 25 H025 no ..... .....
+ 25 2 yes ....1 .....
+ 2 H004 no ..... .....
+ 2 19 yes ..... 0....
+ 19 30 no ..... .....
+ 30 H005 yes ..... ....0
+ 30 28 no ..... .....
+ 28 H031 yes ..... ..1..
+ 28 H008 no ..... .....
+ 19 14 no ..... .....
+ 14 H024 yes ..... ...1.
+ 14 7 yes ...1. .....
+ 7 24 no ..... .....
+ 24 H032 yes ..... .1...
+ 24 H016 no ..... .....
+ 7 26 yes ..1.. .....
+ 26 H021 yes ..... ..1..
+ 26 8 yes 1.... .....
+ 8 H002 no ..... .....
+ 8 16 yes ....0 .....
+ 16 29 no ..... .....
+ 29 H012 no ..... .....
+ 29 H009 yes ..... ..1..
+ 16 6 yes ..... 1....
+ 6 H023 no ..... .....
+ 6 H026 yes 0.... .....
+ 1 27 no ..... .....
+ 27 35 no ..... .....
+ 35 ANCE no ..... .....
+ 35 H030 yes ..... ...1.
+ 27 10 yes .0... .....
+ 10 H006 no ..... .....
+ 10 13 yes ..... .1.1.
+ 13 H028 no ..... .....
+ 13 3 yes ..... ..1..
+ 3 9 no ..... .....
+ 9 H015 yes ..... ...0.
+ 9 11 no ..... .....
+ 11 H001 no ..... .....
+ 11 H020 yes ..... ....0
+ 3 5 yes .1... .....
+ 5 34 no ..... .....
+ 34 H018 no ..... .....
+ 34 21 yes ...1. .....
+ 21 31 no ..... .....
+ 31 H011 no ..... .....
+ 31 H003 yes ....1 .....
+ 21 15 no ..... .....
+ 15 33 yes ..1.. .....
+ 33 H014 yes 0.... .....
+ 33 H017 no ..... .....
+ 15 12 yes ..... ....0
+ 12 H010 no ..... .....
+ 12 18 no ..... .....
+ 18 H033 yes 0.... .....
+ 18 H027 yes ..1.. 0....
+ 5 20 yes 0.... .....
+ 20 H029 no ..... .....
+ 20 4 yes ..... ....0
+ 4 H034 no ..... .....
+ 4 32 yes ....1 .....
+ 32 H022 no ..... .....
+ 32 23 yes ..... 0....
+ 23 H013 no ..... .....
+ 23 H019 yes ..... ....1
+
+
+
+
+
+ +--H035
+ +----------------------------------------22
+ ! +--H007
+ +----------------------------------------------------------17
+ ! ! +--------------------------------------H025
+ ! ! !
+ ! +----25 +-----------------------------------H004
+ ! ! !
+ ! ! ! +-----H005
+ ! +--2 +-------------------------30
+ ! ! ! ! +--H031
+ ! ! ! +-28
+ ! +-19 +--H008
+ ! !
+ ! ! +-----------------------H024
+ ! ! !
+ ! +-------14 +--H032
+ ! ! +----------------24
+ ! ! ! +--H016
+--1 +--7
+ ! ! +--------------H021
+ ! ! !
+ ! +----26 +-----------H002
+ ! ! !
+ ! +--8 +--H012
+ ! ! +----29
+ ! ! ! +--H009
+ ! +-16
+ ! ! +--H023
+ ! +-----6
+ ! +--H026
+ !
+ ! +--ANCE
+ ! +----------------------------------------------------35
+ ! ! +--H030
+ ! !
+ +----------------------------------------------27 +--------------------------------------------------H006
+ ! !
+ ! ! +-----------------------------------------------H028
+ +----10 !
+ ! ! +--H001
+ ! ! +-11
+ ! ! +--------------------------------------9 +--H015
+ +-13 ! !
+ ! ! +-----H020
+ ! !
+ ! ! +--------------------H018
+ ! ! !
+ ! ! ! +--H011
+ +--3 +-------------34 +-------------31
+ ! ! ! ! +--H003
+ ! ! ! !
+ ! ! +-21 +--H014
+ ! ! ! +-------33
+ ! ! ! ! +--H017
+ ! ! +----15
+ +--------5 ! +-----H010
+ ! +----12
+ ! ! +--H033
+ ! +-18
+ ! +--H027
+ !
+ ! +-----------H029
+ +----------------------20
+ ! +--------H034
+ +--4
+ ! +-----H022
+ +-32
+ ! +--H013
+ +-23
+ +--H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 1 no ..... .....
+ 1 17 no ..... .....
+ 17 22 yes ...1. .....
+ 22 H035 yes ..... ....0
+ 22 H007 no ..... .....
+ 17 25 yes 0.... .....
+ 25 H025 no ..... .....
+ 25 2 yes ....1 .....
+ 2 H004 no ..... .....
+ 2 19 yes ..... 0....
+ 19 30 no ..... .....
+ 30 H005 yes ..... ....0
+ 30 28 no ..... .....
+ 28 H031 yes ..... ..1..
+ 28 H008 no ..... .....
+ 19 14 no ..... .....
+ 14 H024 yes ..... ...1.
+ 14 7 yes ...1. .....
+ 7 24 no ..... .....
+ 24 H032 yes ..... .1...
+ 24 H016 no ..... .....
+ 7 26 yes ..1.. .....
+ 26 H021 yes ..... ..1..
+ 26 8 yes 1.... .....
+ 8 H002 no ..... .....
+ 8 16 yes ....0 .....
+ 16 29 no ..... .....
+ 29 H012 no ..... .....
+ 29 H009 yes ..... ..1..
+ 16 6 yes ..... 1....
+ 6 H023 no ..... .....
+ 6 H026 yes 0.... .....
+ 1 27 no ..... .....
+ 27 35 no ..... .....
+ 35 ANCE no ..... .....
+ 35 H030 yes ..... ...1.
+ 27 10 yes .0... .....
+ 10 H006 no ..... .....
+ 10 13 yes ..... .1.1.
+ 13 H028 no ..... .....
+ 13 3 yes ..... ..1..
+ 3 9 no ..... .....
+ 9 11 no ..... .....
+ 11 H001 no ..... .....
+ 11 H015 yes ..... ...0.
+ 9 H020 yes ..... ....0
+ 3 5 yes .1... .....
+ 5 34 no ..... .....
+ 34 H018 no ..... .....
+ 34 21 yes ...1. .....
+ 21 31 no ..... .....
+ 31 H011 no ..... .....
+ 31 H003 yes ....1 .....
+ 21 15 no ..... .....
+ 15 33 yes ..1.. .....
+ 33 H014 yes 0.... .....
+ 33 H017 no ..... .....
+ 15 12 yes ..... ....0
+ 12 H010 no ..... .....
+ 12 18 no ..... .....
+ 18 H033 yes 0.... .....
+ 18 H027 yes ..1.. 0....
+ 5 20 yes 0.... .....
+ 20 H029 no ..... .....
+ 20 4 yes ..... ....0
+ 4 H034 no ..... .....
+ 4 32 yes ....1 .....
+ 32 H022 no ..... .....
+ 32 23 yes ..... 0....
+ 23 H013 no ..... .....
+ 23 H019 yes ..... ....1
+
+
+
+
+
+ +--------------------------------------H025
+ !
+ +----------------------------------------------------------------25 +-----------------------------------H004
+ ! ! !
+ ! ! ! +-----H005
+ ! +--2 +-------------------------30
+ ! ! ! ! +--H031
+ ! ! ! +-28
+ ! +-19 +--H008
+ ! !
+ ! ! +-----------------------H024
+ ! ! !
+ ! +-------14 +--H032
+ ! ! +----------------24
+ ! ! ! +--H016
+ ! +--7
+ ! ! +--------------H021
+--1 ! !
+ ! +----26 +-----------H002
+ ! ! !
+ ! +--8 +--H012
+ ! ! +----29
+ ! ! ! +--H009
+ ! +-16
+ ! ! +--H023
+ ! +-----6
+ ! +--H026
+ !
+ ! +--H035
+ ! +----------------------------------------------------------22
+ ! ! +--H007
+ ! !
+ +----------------------------------------17 +--ANCE
+ ! +----------------------------------------------------35
+ ! ! +--H030
+ +----27
+ ! +--------------------------------------------------H006
+ ! !
+ +----10 +-----------------------------------------------H028
+ ! !
+ ! ! +--------------------------------------------H001
+ +-13 !
+ ! ! +--H015
+ ! ! +--------------------------------------9
+ +-11 ! +--H020
+ ! !
+ ! ! +--------------------H018
+ ! ! !
+ ! ! ! +--H011
+ +--3 +-------------34 +-------------31
+ ! ! ! ! +--H003
+ ! ! ! !
+ ! ! +-21 +--H014
+ ! ! ! +-------33
+ ! ! ! ! +--H017
+ ! ! +----15
+ +-----5 ! +-----H010
+ ! +----12
+ ! ! +--H033
+ ! +-18
+ ! +--H027
+ !
+ ! +-----------H029
+ +----------------------20
+ ! +--------H034
+ +--4
+ ! +-----H022
+ +-32
+ ! +--H013
+ +-23
+ +--H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 1 no ..... .....
+ 1 25 yes 0.... .....
+ 25 H025 no ..... .....
+ 25 2 yes ....1 .....
+ 2 H004 no ..... .....
+ 2 19 yes ..... 0....
+ 19 30 no ..... .....
+ 30 H005 yes ..... ....0
+ 30 28 no ..... .....
+ 28 H031 yes ..... ..1..
+ 28 H008 no ..... .....
+ 19 14 no ..... .....
+ 14 H024 yes ..... ...1.
+ 14 7 yes ...1. .....
+ 7 24 no ..... .....
+ 24 H032 yes ..... .1...
+ 24 H016 no ..... .....
+ 7 26 yes ..1.. .....
+ 26 H021 yes ..... ..1..
+ 26 8 yes 1.... .....
+ 8 H002 no ..... .....
+ 8 16 yes ....0 .....
+ 16 29 no ..... .....
+ 29 H012 no ..... .....
+ 29 H009 yes ..... ..1..
+ 16 6 yes ..... 1....
+ 6 H023 no ..... .....
+ 6 H026 yes 0.... .....
+ 1 17 no ..... .....
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+ 22 H007 no ..... .....
+ 17 27 no ..... .....
+ 27 35 no ..... .....
+ 35 ANCE no ..... .....
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+ 27 10 yes .0... .....
+ 10 H006 no ..... .....
+ 10 13 yes ..... .1.1.
+ 13 H028 no ..... .....
+ 13 11 yes ..... ..1..
+ 11 H001 no ..... .....
+ 11 3 no ..... .....
+ 3 9 no ..... .....
+ 9 H015 yes ..... ...0.
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+ 3 5 yes .1... .....
+ 5 34 no ..... .....
+ 34 H018 no ..... .....
+ 34 21 yes ...1. .....
+ 21 31 no ..... .....
+ 31 H011 no ..... .....
+ 31 H003 yes ....1 .....
+ 21 15 no ..... .....
+ 15 33 yes ..1.. .....
+ 33 H014 yes 0.... .....
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+ 15 12 yes ..... ....0
+ 12 H010 no ..... .....
+ 12 18 no ..... .....
+ 18 H033 yes 0.... .....
+ 18 H027 yes ..1.. 0....
+ 5 20 yes 0.... .....
+ 20 H029 no ..... .....
+ 20 4 yes ..... ....0
+ 4 H034 no ..... .....
+ 4 32 yes ....1 .....
+ 32 H022 no ..... .....
+ 32 23 yes ..... 0....
+ 23 H013 no ..... .....
+ 23 H019 yes ..... ....1
+
+
+
+
+
+ +--H035
+ +----------------------------------------------------------------------------------------------------22
+ ! +--H007
+ !
+ ! +--ANCE
+ ! +----------------------------------------------------------------------------------------------35
+ ! ! +--H030
+-17 !
+ ! ! +--------------------------------------H025
+ ! ! !
+ ! ! ! +-----------------------------------H004
+ ! ! +----------------------------------------------------25 !
+ ! ! ! ! ! +-----H005
+ ! ! ! ! ! +-30
+ +----27 ! +--2 ! ! +--H031
+ ! ! ! +----------------------19 +-28
+ ! ! ! ! ! +--H008
+ ! ! ! ! !
+ ! ! +-14 +--------H024
+ ! ! !
+ ! ! ! +--------------------H032
+ ! ! ! !
+ ! ! +----------24 +-----------------H016
+ ! ! ! !
+ +-----1 +--7 +--------------H021
+ ! ! !
+ ! +-26 +-----------H002
+ ! ! !
+ ! +--8 +--H012
+ ! ! +----29
+ ! ! ! +--H009
+ ! +-16
+ ! ! +--H023
+ ! +-----6
+ ! +--H026
+ !
+ ! +--------------------------------------------------H006
+ ! !
+ +----------------------------------------10 +-----------------------------------------------H028
+ ! !
+ ! ! +--H015
+ +-13 +-----------------------------------------9
+ ! ! +--H020
+ ! !
+ ! ! +--------------------------------------H001
+ +--3 !
+ ! ! +--------------------H018
+ ! ! !
+ ! ! ! +--H011
+ ! ! +-------------34 +-------------31
+ +----11 ! ! ! +--H003
+ ! ! ! !
+ ! ! +-21 +--H014
+ ! ! ! +-------33
+ ! ! ! ! +--H017
+ ! ! +----15
+ +--5 ! +-----H010
+ ! +----12
+ ! ! +--H033
+ ! +-18
+ ! +--H027
+ !
+ ! +-----------H029
+ +----------------------20
+ ! +--------H034
+ +--4
+ ! +-----H022
+ +-32
+ ! +--H013
+ +-23
+ +--H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 17 no ..... .....
+ 17 22 yes ...1. .....
+ 22 H035 yes ..... ....0
+ 22 H007 no ..... .....
+ 17 27 no ..... .....
+ 27 35 no ..... .....
+ 35 ANCE no ..... .....
+ 35 H030 yes ..... ...1.
+ 27 1 no ..... .....
+ 1 25 yes 0.... .....
+ 25 H025 no ..... .....
+ 25 2 yes ....1 .....
+ 2 H004 no ..... .....
+ 2 14 yes ..... 0....
+ 14 19 no ..... .....
+ 19 30 no ..... .....
+ 30 H005 yes ..... ....0
+ 30 28 no ..... .....
+ 28 H031 yes ..... ..1..
+ 28 H008 no ..... .....
+ 19 H024 yes ..... ...1.
+ 14 24 yes ...1. .....
+ 24 H032 yes ..... .1...
+ 24 7 no ..... .....
+ 7 H016 no ..... .....
+ 7 26 yes ..1.. .....
+ 26 H021 yes ..... ..1..
+ 26 8 yes 1.... .....
+ 8 H002 no ..... .....
+ 8 16 yes ....0 .....
+ 16 29 no ..... .....
+ 29 H012 no ..... .....
+ 29 H009 yes ..... ..1..
+ 16 6 yes ..... 1....
+ 6 H023 no ..... .....
+ 6 H026 yes 0.... .....
+ 1 10 yes .0... .....
+ 10 H006 no ..... .....
+ 10 13 yes ..... .1.1.
+ 13 H028 no ..... .....
+ 13 3 yes ..... ..1..
+ 3 9 no ..... .....
+ 9 H015 yes ..... ...0.
+ 9 H020 yes ..... ....0
+ 3 11 no ..... .....
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+ 11 5 yes .1... .....
+ 5 34 no ..... .....
+ 34 H018 no ..... .....
+ 34 21 yes ...1. .....
+ 21 31 no ..... .....
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+ 31 H003 yes ....1 .....
+ 21 15 no ..... .....
+ 15 33 yes ..1.. .....
+ 33 H014 yes 0.... .....
+ 33 H017 no ..... .....
+ 15 12 yes ..... ....0
+ 12 H010 no ..... .....
+ 12 18 no ..... .....
+ 18 H033 yes 0.... .....
+ 18 H027 yes ..1.. 0....
+ 5 20 yes 0.... .....
+ 20 H029 no ..... .....
+ 20 4 yes ..... ....0
+ 4 H034 no ..... .....
+ 4 32 yes ....1 .....
+ 32 H022 no ..... .....
+ 32 23 yes ..... 0....
+ 23 H013 no ..... .....
+ 23 H019 yes ..... ....1
+
+
+
+
+
+ +--H035
+ +----------------------------------------------------------------------------------------------------22
+ ! +--H007
+ !
+ ! +--------------------------------------H025
+ ! !
+ ! ! +-----------------------------------H004
+ ! +----------------------------------------------------------25 !
+ ! ! ! ! +-----H005
+ ! ! ! ! +-30
+ ! ! +--2 ! ! +--H031
+-17 ! ! +----------------------19 +-28
+ ! ! ! ! ! +--H008
+ ! ! ! ! !
+ ! ! +-14 +--------H024
+ ! ! !
+ ! ! ! +--------------------H032
+ ! ! ! !
+ ! ! +----------24 +-----------------H016
+ ! ! ! !
+ ! ! +--7 +--------------H021
+ +-----1 ! !
+ ! +-26 +-----------H002
+ ! ! !
+ ! +--8 +--H012
+ ! ! +----29
+ ! ! ! +--H009
+ ! +-16
+ ! ! +--H023
+ ! +-----6
+ ! +--H026
+ !
+ ! +--ANCE
+ ! +----------------------------------------------------35
+ ! ! +--H030
+ +----------------------------------------27
+ ! +--------------------------------------------------H006
+ ! !
+ +----10 +-----------------------------------------------H028
+ ! !
+ ! ! +--H015
+ +-13 +-----------------------------------------9
+ ! ! +--H020
+ ! !
+ ! ! +--------------------------------------H001
+ +--3 !
+ ! ! +--------------------H018
+ ! ! !
+ ! ! ! +--H011
+ ! ! +-------------34 +-------------31
+ +----11 ! ! ! +--H003
+ ! ! ! !
+ ! ! +-21 +--H014
+ ! ! ! +-------33
+ ! ! ! ! +--H017
+ ! ! +----15
+ +--5 ! +-----H010
+ ! +----12
+ ! ! +--H033
+ ! +-18
+ ! +--H027
+ !
+ ! +-----------H029
+ +----------------------20
+ ! +--------H034
+ +--4
+ ! +-----H022
+ +-32
+ ! +--H013
+ +-23
+ +--H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 17 no ..... .....
+ 17 22 yes ...1. .....
+ 22 H035 yes ..... ....0
+ 22 H007 no ..... .....
+ 17 1 no ..... .....
+ 1 25 yes 0.... .....
+ 25 H025 no ..... .....
+ 25 2 yes ....1 .....
+ 2 H004 no ..... .....
+ 2 14 yes ..... 0....
+ 14 19 no ..... .....
+ 19 30 no ..... .....
+ 30 H005 yes ..... ....0
+ 30 28 no ..... .....
+ 28 H031 yes ..... ..1..
+ 28 H008 no ..... .....
+ 19 H024 yes ..... ...1.
+ 14 24 yes ...1. .....
+ 24 H032 yes ..... .1...
+ 24 7 no ..... .....
+ 7 H016 no ..... .....
+ 7 26 yes ..1.. .....
+ 26 H021 yes ..... ..1..
+ 26 8 yes 1.... .....
+ 8 H002 no ..... .....
+ 8 16 yes ....0 .....
+ 16 29 no ..... .....
+ 29 H012 no ..... .....
+ 29 H009 yes ..... ..1..
+ 16 6 yes ..... 1....
+ 6 H023 no ..... .....
+ 6 H026 yes 0.... .....
+ 1 27 no ..... .....
+ 27 35 no ..... .....
+ 35 ANCE no ..... .....
+ 35 H030 yes ..... ...1.
+ 27 10 yes .0... .....
+ 10 H006 no ..... .....
+ 10 13 yes ..... .1.1.
+ 13 H028 no ..... .....
+ 13 3 yes ..... ..1..
+ 3 9 no ..... .....
+ 9 H015 yes ..... ...0.
+ 9 H020 yes ..... ....0
+ 3 11 no ..... .....
+ 11 H001 no ..... .....
+ 11 5 yes .1... .....
+ 5 34 no ..... .....
+ 34 H018 no ..... .....
+ 34 21 yes ...1. .....
+ 21 31 no ..... .....
+ 31 H011 no ..... .....
+ 31 H003 yes ....1 .....
+ 21 15 no ..... .....
+ 15 33 yes ..1.. .....
+ 33 H014 yes 0.... .....
+ 33 H017 no ..... .....
+ 15 12 yes ..... ....0
+ 12 H010 no ..... .....
+ 12 18 no ..... .....
+ 18 H033 yes 0.... .....
+ 18 H027 yes ..1.. 0....
+ 5 20 yes 0.... .....
+ 20 H029 no ..... .....
+ 20 4 yes ..... ....0
+ 4 H034 no ..... .....
+ 4 32 yes ....1 .....
+ 32 H022 no ..... .....
+ 32 23 yes ..... 0....
+ 23 H013 no ..... .....
+ 23 H019 yes ..... ....1
+
+
+
+
+
+ +--H035
+ +----------------------------------------------------------------------------------------------------22
+ ! +--H007
+ !
+ ! +--ANCE
+ ! +----------------------------------------35
+ ! ! +--H030
+ ! !
+ ! +----------------------------------------------------27 +--------------------------------------H025
+ ! ! ! !
+ ! ! ! ! +-----------------------------------H004
+ ! ! +----25 !
+-17 ! ! ! +-----H005
+ ! ! ! ! +-30
+ ! ! +--2 ! ! +--H031
+ ! ! ! +----------------------19 +-28
+ ! ! ! ! ! +--H008
+ ! ! ! ! !
+ ! ! +-14 +--------H024
+ ! ! !
+ ! ! ! +--------------------H032
+ ! ! ! !
+ ! ! +----------24 +-----------------H016
+ +-----1 ! !
+ ! +--7 +--------------H021
+ ! ! !
+ ! +-26 +-----------H002
+ ! ! !
+ ! +--8 +--H012
+ ! ! +----29
+ ! ! ! +--H009
+ ! +-16
+ ! ! +--H023
+ ! +-----6
+ ! +--H026
+ !
+ ! +--------------------------------------------------H006
+ ! !
+ +----------------------------------------------10 +-----------------------------------------------H028
+ ! !
+ ! ! +--H015
+ +-13 +-----------------------------------------9
+ ! ! +--H020
+ ! !
+ ! ! +--------------------------------------H001
+ +--3 !
+ ! ! +--------------------H018
+ ! ! !
+ ! ! ! +--H011
+ ! ! +-------------34 +-------------31
+ +----11 ! ! ! +--H003
+ ! ! ! !
+ ! ! +-21 +--H014
+ ! ! ! +-------33
+ ! ! ! ! +--H017
+ ! ! +----15
+ +--5 ! +-----H010
+ ! +----12
+ ! ! +--H033
+ ! +-18
+ ! +--H027
+ !
+ ! +-----------H029
+ +----------------------20
+ ! +--------H034
+ +--4
+ ! +-----H022
+ +-32
+ ! +--H013
+ +-23
+ +--H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 17 no ..... .....
+ 17 22 yes ...1. .....
+ 22 H035 yes ..... ....0
+ 22 H007 no ..... .....
+ 17 1 no ..... .....
+ 1 27 no ..... .....
+ 27 35 no ..... .....
+ 35 ANCE no ..... .....
+ 35 H030 yes ..... ...1.
+ 27 25 yes 0.... .....
+ 25 H025 no ..... .....
+ 25 2 yes ....1 .....
+ 2 H004 no ..... .....
+ 2 14 yes ..... 0....
+ 14 19 no ..... .....
+ 19 30 no ..... .....
+ 30 H005 yes ..... ....0
+ 30 28 no ..... .....
+ 28 H031 yes ..... ..1..
+ 28 H008 no ..... .....
+ 19 H024 yes ..... ...1.
+ 14 24 yes ...1. .....
+ 24 H032 yes ..... .1...
+ 24 7 no ..... .....
+ 7 H016 no ..... .....
+ 7 26 yes ..1.. .....
+ 26 H021 yes ..... ..1..
+ 26 8 yes 1.... .....
+ 8 H002 no ..... .....
+ 8 16 yes ....0 .....
+ 16 29 no ..... .....
+ 29 H012 no ..... .....
+ 29 H009 yes ..... ..1..
+ 16 6 yes ..... 1....
+ 6 H023 no ..... .....
+ 6 H026 yes 0.... .....
+ 1 10 yes .0... .....
+ 10 H006 no ..... .....
+ 10 13 yes ..... .1.1.
+ 13 H028 no ..... .....
+ 13 3 yes ..... ..1..
+ 3 9 no ..... .....
+ 9 H015 yes ..... ...0.
+ 9 H020 yes ..... ....0
+ 3 11 no ..... .....
+ 11 H001 no ..... .....
+ 11 5 yes .1... .....
+ 5 34 no ..... .....
+ 34 H018 no ..... .....
+ 34 21 yes ...1. .....
+ 21 31 no ..... .....
+ 31 H011 no ..... .....
+ 31 H003 yes ....1 .....
+ 21 15 no ..... .....
+ 15 33 yes ..1.. .....
+ 33 H014 yes 0.... .....
+ 33 H017 no ..... .....
+ 15 12 yes ..... ....0
+ 12 H010 no ..... .....
+ 12 18 no ..... .....
+ 18 H033 yes 0.... .....
+ 18 H027 yes ..1.. 0....
+ 5 20 yes 0.... .....
+ 20 H029 no ..... .....
+ 20 4 yes ..... ....0
+ 4 H034 no ..... .....
+ 4 32 yes ....1 .....
+ 32 H022 no ..... .....
+ 32 23 yes ..... 0....
+ 23 H013 no ..... .....
+ 23 H019 yes ..... ....1
+
+
+
+
+
+ +--H035
+ +----------------------------------------------------------------------------------------------------22
+ ! +--H007
+ !
+ ! +--------------------------------------------H030
+ ! !
+ ! +----------------------------------------------------27 +-----------------------------------------ANCE
+ ! ! ! !
+ ! ! +-35 +--------------------------------------H025
+ ! ! ! !
+ ! ! ! ! +-----------------------------------H004
+-17 ! +-25 !
+ ! ! ! ! +-----H005
+ ! ! ! ! +-30
+ ! ! +--2 ! ! +--H031
+ ! ! ! +----------------------19 +-28
+ ! ! ! ! ! +--H008
+ ! ! ! ! !
+ ! ! +-14 +--------H024
+ ! ! !
+ ! ! ! +--------------------H032
+ ! ! ! !
+ +-----1 +----------24 +-----------------H016
+ ! ! !
+ ! +--7 +--------------H021
+ ! ! !
+ ! +-26 +-----------H002
+ ! ! !
+ ! +--8 +--H012
+ ! ! +----29
+ ! ! ! +--H009
+ ! +-16
+ ! ! +--H023
+ ! +-----6
+ ! +--H026
+ !
+ ! +--------------------------------------------------H006
+ ! !
+ +----------------------------------------------10 +-----------------------------------------------H028
+ ! !
+ ! ! +--H015
+ +-13 +-----------------------------------------9
+ ! ! +--H020
+ ! !
+ ! ! +--------------------------------------H001
+ +--3 !
+ ! ! +--------------------H018
+ ! ! !
+ ! ! ! +--H011
+ ! ! +-------------34 +-------------31
+ +----11 ! ! ! +--H003
+ ! ! ! !
+ ! ! +-21 +--H014
+ ! ! ! +-------33
+ ! ! ! ! +--H017
+ ! ! +----15
+ +--5 ! +-----H010
+ ! +----12
+ ! ! +--H033
+ ! +-18
+ ! +--H027
+ !
+ ! +-----------H029
+ +----------------------20
+ ! +--------H034
+ +--4
+ ! +-----H022
+ +-32
+ ! +--H013
+ +-23
+ +--H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 17 no ..... .....
+ 17 22 yes ...1. .....
+ 22 H035 yes ..... ....0
+ 22 H007 no ..... .....
+ 17 1 no ..... .....
+ 1 27 no ..... .....
+ 27 H030 yes ..... ...1.
+ 27 35 no ..... .....
+ 35 ANCE no ..... .....
+ 35 25 yes 0.... .....
+ 25 H025 no ..... .....
+ 25 2 yes ....1 .....
+ 2 H004 no ..... .....
+ 2 14 yes ..... 0....
+ 14 19 no ..... .....
+ 19 30 no ..... .....
+ 30 H005 yes ..... ....0
+ 30 28 no ..... .....
+ 28 H031 yes ..... ..1..
+ 28 H008 no ..... .....
+ 19 H024 yes ..... ...1.
+ 14 24 yes ...1. .....
+ 24 H032 yes ..... .1...
+ 24 7 no ..... .....
+ 7 H016 no ..... .....
+ 7 26 yes ..1.. .....
+ 26 H021 yes ..... ..1..
+ 26 8 yes 1.... .....
+ 8 H002 no ..... .....
+ 8 16 yes ....0 .....
+ 16 29 no ..... .....
+ 29 H012 no ..... .....
+ 29 H009 yes ..... ..1..
+ 16 6 yes ..... 1....
+ 6 H023 no ..... .....
+ 6 H026 yes 0.... .....
+ 1 10 yes .0... .....
+ 10 H006 no ..... .....
+ 10 13 yes ..... .1.1.
+ 13 H028 no ..... .....
+ 13 3 yes ..... ..1..
+ 3 9 no ..... .....
+ 9 H015 yes ..... ...0.
+ 9 H020 yes ..... ....0
+ 3 11 no ..... .....
+ 11 H001 no ..... .....
+ 11 5 yes .1... .....
+ 5 34 no ..... .....
+ 34 H018 no ..... .....
+ 34 21 yes ...1. .....
+ 21 31 no ..... .....
+ 31 H011 no ..... .....
+ 31 H003 yes ....1 .....
+ 21 15 no ..... .....
+ 15 33 yes ..1.. .....
+ 33 H014 yes 0.... .....
+ 33 H017 no ..... .....
+ 15 12 yes ..... ....0
+ 12 H010 no ..... .....
+ 12 18 no ..... .....
+ 18 H033 yes 0.... .....
+ 18 H027 yes ..1.. 0....
+ 5 20 yes 0.... .....
+ 20 H029 no ..... .....
+ 20 4 yes ..... ....0
+ 4 H034 no ..... .....
+ 4 32 yes ....1 .....
+ 32 H022 no ..... .....
+ 32 23 yes ..... 0....
+ 23 H013 no ..... .....
+ 23 H019 yes ..... ....1
+
+
+
+
+
+ +--H035
+ +----------------------------------------------------------------------------------------------------22
+ ! +--H007
+ !
+ ! +--------------------------------------------ANCE
+ ! !
+ ! +----------------------------------------------------35 +-----------------------------------------H030
+ ! ! ! !
+ ! ! +-27 +--------------------------------------H025
+ ! ! ! !
+ ! ! ! ! +-----------------------------------H004
+-17 ! +-25 !
+ ! ! ! ! +-----H005
+ ! ! ! ! +-30
+ ! ! +--2 ! ! +--H031
+ ! ! ! +----------------------19 +-28
+ ! ! ! ! ! +--H008
+ ! ! ! ! !
+ ! ! +-14 +--------H024
+ ! ! !
+ ! ! ! +--------------------H032
+ ! ! ! !
+ +-----1 +----------24 +-----------------H016
+ ! ! !
+ ! +--7 +--------------H021
+ ! ! !
+ ! +-26 +-----------H002
+ ! ! !
+ ! +--8 +--H012
+ ! ! +----29
+ ! ! ! +--H009
+ ! +-16
+ ! ! +--H023
+ ! +-----6
+ ! +--H026
+ !
+ ! +--------------------------------------------------H006
+ ! !
+ +----------------------------------------------10 +-----------------------------------------------H028
+ ! !
+ ! ! +--H015
+ +-13 +-----------------------------------------9
+ ! ! +--H020
+ ! !
+ ! ! +--------------------------------------H001
+ +--3 !
+ ! ! +--------------------H018
+ ! ! !
+ ! ! ! +--H011
+ ! ! +-------------34 +-------------31
+ +----11 ! ! ! +--H003
+ ! ! ! !
+ ! ! +-21 +--H014
+ ! ! ! +-------33
+ ! ! ! ! +--H017
+ ! ! +----15
+ +--5 ! +-----H010
+ ! +----12
+ ! ! +--H033
+ ! +-18
+ ! +--H027
+ !
+ ! +-----------H029
+ +----------------------20
+ ! +--------H034
+ +--4
+ ! +-----H022
+ +-32
+ ! +--H013
+ +-23
+ +--H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 17 no ..... .....
+ 17 22 yes ...1. .....
+ 22 H035 yes ..... ....0
+ 22 H007 no ..... .....
+ 17 1 no ..... .....
+ 1 35 no ..... .....
+ 35 ANCE no ..... .....
+ 35 27 no ..... .....
+ 27 H030 yes ..... ...1.
+ 27 25 yes 0.... .....
+ 25 H025 no ..... .....
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+ 2 14 yes ..... 0....
+ 14 19 no ..... .....
+ 19 30 no ..... .....
+ 30 H005 yes ..... ....0
+ 30 28 no ..... .....
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+ 28 H008 no ..... .....
+ 19 H024 yes ..... ...1.
+ 14 24 yes ...1. .....
+ 24 H032 yes ..... .1...
+ 24 7 no ..... .....
+ 7 H016 no ..... .....
+ 7 26 yes ..1.. .....
+ 26 H021 yes ..... ..1..
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+ 6 H023 no ..... .....
+ 6 H026 yes 0.... .....
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+ 13 H028 no ..... .....
+ 13 3 yes ..... ..1..
+ 3 9 no ..... .....
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+ 3 11 no ..... .....
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+ 5 34 no ..... .....
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+ 21 31 no ..... .....
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+ 15 12 yes ..... ....0
+ 12 H010 no ..... .....
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+ 5 20 yes 0.... .....
+ 20 H029 no ..... .....
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+ 4 H034 no ..... .....
+ 4 32 yes ....1 .....
+ 32 H022 no ..... .....
+ 32 23 yes ..... 0....
+ 23 H013 no ..... .....
+ 23 H019 yes ..... ....1
+
+
+
+
+
+ +--H035
+ +----------------------------------------------------------------------------------------------------22
+ ! +--H007
+ !
+ ! +--ANCE
+ ! +----------------------------------------35
+ ! ! +--H030
+ ! +----------------------------------------------------27
+ ! ! ! +--------------------------------------H025
+ ! ! ! !
+ ! ! +----25 +-----------------------------------H004
+-17 ! ! !
+ ! ! +--2 +--------------------------------H024
+ ! ! ! !
+ ! ! +-14 +-----------------------------H005
+ ! ! ! !
+ ! ! +-30 +--H031
+ ! ! ! +----------------------28
+ ! ! ! ! +--H008
+ ! ! +-19
+ ! ! ! +--------------------H032
+ ! ! ! !
+ +-----1 +----24 +-----------------H016
+ ! ! !
+ ! +--7 +--------------H021
+ ! ! !
+ ! +-26 +-----------H002
+ ! ! !
+ ! +--8 +--H012
+ ! ! +----29
+ ! ! ! +--H009
+ ! +-16
+ ! ! +--H023
+ ! +-----6
+ ! +--H026
+ !
+ ! +--------------------------------------------------H006
+ ! !
+ +----------------------------------------------10 +-----------------------------------------------H028
+ ! !
+ ! ! +--H015
+ +-13 +-----------------------------------------9
+ ! ! +--H020
+ ! !
+ ! ! +--------------------------------------H001
+ +--3 !
+ ! ! +--------------------H018
+ ! ! !
+ ! ! ! +--H011
+ ! ! +-------------34 +-------------31
+ +----11 ! ! ! +--H003
+ ! ! ! !
+ ! ! +-21 +--H014
+ ! ! ! +-------33
+ ! ! ! ! +--H017
+ ! ! +----15
+ +--5 ! +-----H010
+ ! +----12
+ ! ! +--H033
+ ! +-18
+ ! +--H027
+ !
+ ! +-----------H029
+ +----------------------20
+ ! +--------H034
+ +--4
+ ! +-----H022
+ +-32
+ ! +--H013
+ +-23
+ +--H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 17 no ..... .....
+ 17 22 yes ...1. .....
+ 22 H035 yes ..... ....0
+ 22 H007 no ..... .....
+ 17 1 no ..... .....
+ 1 27 no ..... .....
+ 27 35 no ..... .....
+ 35 ANCE no ..... .....
+ 35 H030 yes ..... ...1.
+ 27 25 yes 0.... .....
+ 25 H025 no ..... .....
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+ 2 14 yes ..... 0....
+ 14 H024 yes ..... ...1.
+ 14 30 no ..... .....
+ 30 H005 yes ..... ....0
+ 30 19 no ..... .....
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+ 28 H008 no ..... .....
+ 19 24 yes ...1. .....
+ 24 H032 yes ..... .1...
+ 24 7 no ..... .....
+ 7 H016 no ..... .....
+ 7 26 yes ..1.. .....
+ 26 H021 yes ..... ..1..
+ 26 8 yes 1.... .....
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+ 10 H006 no ..... .....
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+ 13 H028 no ..... .....
+ 13 3 yes ..... ..1..
+ 3 9 no ..... .....
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+ 5 34 no ..... .....
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+ 12 H010 no ..... .....
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+ 5 20 yes 0.... .....
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+ 32 H022 no ..... .....
+ 32 23 yes ..... 0....
+ 23 H013 no ..... .....
+ 23 H019 yes ..... ....1
+
+
+
+
+
+ +--H035
+ +----------------------------------------------------------------------------------------------------22
+ ! +--H007
+ !
+ ! +--ANCE
+ ! +----------------------------------------35
+ ! ! +--H030
+ ! +----------------------------------------------------27
+ ! ! ! +--------------------------------------H025
+ ! ! ! !
+ ! ! +----25 +-----------------------------------H004
+-17 ! ! !
+ ! ! +--2 +--------------------------------H024
+ ! ! ! !
+ ! ! +-14 +--H031
+ ! ! ! +-------------------------28
+ ! ! ! ! +--H008
+ ! ! +-19
+ ! ! ! +-----------------------H005
+ ! ! ! !
+ ! ! +----30 +--------------------H032
+ ! ! ! !
+ +-----1 +-24 +-----------------H016
+ ! ! !
+ ! +--7 +--------------H021
+ ! ! !
+ ! +-26 +-----------H002
+ ! ! !
+ ! +--8 +--H012
+ ! ! +----29
+ ! ! ! +--H009
+ ! +-16
+ ! ! +--H023
+ ! +-----6
+ ! +--H026
+ !
+ ! +--------------------------------------------------H006
+ ! !
+ +----------------------------------------------10 +-----------------------------------------------H028
+ ! !
+ ! ! +--H015
+ +-13 +-----------------------------------------9
+ ! ! +--H020
+ ! !
+ ! ! +--------------------------------------H001
+ +--3 !
+ ! ! +--------------------H018
+ ! ! !
+ ! ! ! +--H011
+ ! ! +-------------34 +-------------31
+ +----11 ! ! ! +--H003
+ ! ! ! !
+ ! ! +-21 +--H014
+ ! ! ! +-------33
+ ! ! ! ! +--H017
+ ! ! +----15
+ +--5 ! +-----H010
+ ! +----12
+ ! ! +--H033
+ ! +-18
+ ! +--H027
+ !
+ ! +-----------H029
+ +----------------------20
+ ! +--------H034
+ +--4
+ ! +-----H022
+ +-32
+ ! +--H013
+ +-23
+ +--H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 17 no ..... .....
+ 17 22 yes ...1. .....
+ 22 H035 yes ..... ....0
+ 22 H007 no ..... .....
+ 17 1 no ..... .....
+ 1 27 no ..... .....
+ 27 35 no ..... .....
+ 35 ANCE no ..... .....
+ 35 H030 yes ..... ...1.
+ 27 25 yes 0.... .....
+ 25 H025 no ..... .....
+ 25 2 yes ....1 .....
+ 2 H004 no ..... .....
+ 2 14 yes ..... 0....
+ 14 H024 yes ..... ...1.
+ 14 19 no ..... .....
+ 19 28 no ..... .....
+ 28 H031 yes ..... ..1..
+ 28 H008 no ..... .....
+ 19 30 no ..... .....
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+ 30 24 yes ...1. .....
+ 24 H032 yes ..... .1...
+ 24 7 no ..... .....
+ 7 H016 no ..... .....
+ 7 26 yes ..1.. .....
+ 26 H021 yes ..... ..1..
+ 26 8 yes 1.... .....
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+ 8 16 yes ....0 .....
+ 16 29 no ..... .....
+ 29 H012 no ..... .....
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+ 16 6 yes ..... 1....
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+ 1 10 yes .0... .....
+ 10 H006 no ..... .....
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+ 13 3 yes ..... ..1..
+ 3 9 no ..... .....
+ 9 H015 yes ..... ...0.
+ 9 H020 yes ..... ....0
+ 3 11 no ..... .....
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+ 5 34 no ..... .....
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+ 15 12 yes ..... ....0
+ 12 H010 no ..... .....
+ 12 18 no ..... .....
+ 18 H033 yes 0.... .....
+ 18 H027 yes ..1.. 0....
+ 5 20 yes 0.... .....
+ 20 H029 no ..... .....
+ 20 4 yes ..... ....0
+ 4 H034 no ..... .....
+ 4 32 yes ....1 .....
+ 32 H022 no ..... .....
+ 32 23 yes ..... 0....
+ 23 H013 no ..... .....
+ 23 H019 yes ..... ....1
+
+
+
+
+
+ +--H035
+ +----------------------------------------------------------------------------------------------------22
+ ! +--H007
+ !
+ ! +--ANCE
+ ! +----------------------------------------35
+ ! ! +--H030
+ ! +----------------------------------------------------27
+ ! ! ! +--------------------------------------H025
+ ! ! ! !
+ ! ! +----25 +-----------------------------------H004
+-17 ! ! !
+ ! ! +--2 +--------------------------------H024
+ ! ! ! !
+ ! ! ! ! +-----H005
+ ! ! +-14 +----------------------30
+ ! ! ! ! ! +--H031
+ ! ! ! ! +-28
+ ! ! +-19 +--H008
+ ! ! !
+ ! ! ! +--------------------H032
+ ! ! ! !
+ +-----1 +-------24 +-----------------H016
+ ! ! !
+ ! +--7 +--------------H021
+ ! ! !
+ ! +-26 +-----------H002
+ ! ! !
+ ! +--8 +--H012
+ ! ! +----29
+ ! ! ! +--H009
+ ! +-16
+ ! ! +--H023
+ ! +-----6
+ ! +--H026
+ !
+ ! +--------------------------------------------------H006
+ ! !
+ +----------------------------------------------10 +-----------------------------------------------H028
+ ! !
+ ! ! +--H015
+ +-13 +-----------------------------------------9
+ ! ! +--H020
+ ! !
+ ! ! +--------------------------------------H001
+ +--3 !
+ ! ! +--------------------H018
+ ! ! !
+ ! ! ! +--H011
+ ! ! +-------------34 +-------------31
+ +----11 ! ! ! +--H003
+ ! ! ! !
+ ! ! +-21 +--H014
+ ! ! ! +-------33
+ ! ! ! ! +--H017
+ ! ! +----15
+ +--5 ! +-----H010
+ ! +----12
+ ! ! +--H033
+ ! +-18
+ ! +--H027
+ !
+ ! +-----------H029
+ +----------------------20
+ ! +--------H034
+ +--4
+ ! +-----H022
+ +-32
+ ! +--H013
+ +-23
+ +--H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 17 no ..... .....
+ 17 22 yes ...1. .....
+ 22 H035 yes ..... ....0
+ 22 H007 no ..... .....
+ 17 1 no ..... .....
+ 1 27 no ..... .....
+ 27 35 no ..... .....
+ 35 ANCE no ..... .....
+ 35 H030 yes ..... ...1.
+ 27 25 yes 0.... .....
+ 25 H025 no ..... .....
+ 25 2 yes ....1 .....
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+ 2 14 yes ..... 0....
+ 14 H024 yes ..... ...1.
+ 14 19 no ..... .....
+ 19 30 no ..... .....
+ 30 H005 yes ..... ....0
+ 30 28 no ..... .....
+ 28 H031 yes ..... ..1..
+ 28 H008 no ..... .....
+ 19 24 yes ...1. .....
+ 24 H032 yes ..... .1...
+ 24 7 no ..... .....
+ 7 H016 no ..... .....
+ 7 26 yes ..1.. .....
+ 26 H021 yes ..... ..1..
+ 26 8 yes 1.... .....
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+ 8 16 yes ....0 .....
+ 16 29 no ..... .....
+ 29 H012 no ..... .....
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+ 16 6 yes ..... 1....
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+ 1 10 yes .0... .....
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+ 13 3 yes ..... ..1..
+ 3 9 no ..... .....
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+ 5 34 no ..... .....
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+ 21 31 no ..... .....
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+ 21 15 no ..... .....
+ 15 33 yes ..1.. .....
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+ 33 H017 no ..... .....
+ 15 12 yes ..... ....0
+ 12 H010 no ..... .....
+ 12 18 no ..... .....
+ 18 H033 yes 0.... .....
+ 18 H027 yes ..1.. 0....
+ 5 20 yes 0.... .....
+ 20 H029 no ..... .....
+ 20 4 yes ..... ....0
+ 4 H034 no ..... .....
+ 4 32 yes ....1 .....
+ 32 H022 no ..... .....
+ 32 23 yes ..... 0....
+ 23 H013 no ..... .....
+ 23 H019 yes ..... ....1
+
+
+
+
+
+ +--H035
+ +----------------------------------------------------------------------------------------------------22
+ ! +--H007
+ !
+ ! +--ANCE
+ ! +----------------------------------------35
+ ! ! +--H030
+ ! +----------------------------------------------------27
+ ! ! ! +--------------------------------------H025
+ ! ! ! !
+ ! ! +----25 +-----------------------------------H004
+-17 ! ! !
+ ! ! +--2 +--------------------------------H024
+ ! ! ! !
+ ! ! +-14 +-----------------------------H005
+ ! ! ! !
+ ! ! +-30 +--------------------------H031
+ ! ! ! !
+ ! ! +-28 +-----------------------H008
+ ! ! ! !
+ ! ! +-19 +--------------------H032
+ ! ! ! !
+ +-----1 +-24 +-----------------H016
+ ! ! !
+ ! +--7 +--------------H021
+ ! ! !
+ ! +-26 +-----------H002
+ ! ! !
+ ! +--8 +--H012
+ ! ! +----29
+ ! ! ! +--H009
+ ! +-16
+ ! ! +--H023
+ ! +-----6
+ ! +--H026
+ !
+ ! +--------------------------------------------------H006
+ ! !
+ +----------------------------------------------10 +-----------------------------------------------H028
+ ! !
+ ! ! +--H015
+ +-13 +-----------------------------------------9
+ ! ! +--H020
+ ! !
+ ! ! +--------------------------------------H001
+ +--3 !
+ ! ! +--------------------H018
+ ! ! !
+ ! ! ! +--H011
+ ! ! +-------------34 +-------------31
+ +----11 ! ! ! +--H003
+ ! ! ! !
+ ! ! +-21 +--H014
+ ! ! ! +-------33
+ ! ! ! ! +--H017
+ ! ! +----15
+ +--5 ! +-----H010
+ ! +----12
+ ! ! +--H033
+ ! +-18
+ ! +--H027
+ !
+ ! +-----------H029
+ +----------------------20
+ ! +--------H034
+ +--4
+ ! +-----H022
+ +-32
+ ! +--H013
+ +-23
+ +--H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 17 no ..... .....
+ 17 22 yes ...1. .....
+ 22 H035 yes ..... ....0
+ 22 H007 no ..... .....
+ 17 1 no ..... .....
+ 1 27 no ..... .....
+ 27 35 no ..... .....
+ 35 ANCE no ..... .....
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+ 27 25 yes 0.... .....
+ 25 H025 no ..... .....
+ 25 2 yes ....1 .....
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+ 2 14 yes ..... 0....
+ 14 H024 yes ..... ...1.
+ 14 30 no ..... .....
+ 30 H005 yes ..... ....0
+ 30 28 no ..... .....
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+ 28 19 no ..... .....
+ 19 H008 no ..... .....
+ 19 24 yes ...1. .....
+ 24 H032 yes ..... .1...
+ 24 7 no ..... .....
+ 7 H016 no ..... .....
+ 7 26 yes ..1.. .....
+ 26 H021 yes ..... ..1..
+ 26 8 yes 1.... .....
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+ 8 16 yes ....0 .....
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+ 29 H012 no ..... .....
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+ 16 6 yes ..... 1....
+ 6 H023 no ..... .....
+ 6 H026 yes 0.... .....
+ 1 10 yes .0... .....
+ 10 H006 no ..... .....
+ 10 13 yes ..... .1.1.
+ 13 H028 no ..... .....
+ 13 3 yes ..... ..1..
+ 3 9 no ..... .....
+ 9 H015 yes ..... ...0.
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+ 3 11 no ..... .....
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+ 5 34 no ..... .....
+ 34 H018 no ..... .....
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+ 21 31 no ..... .....
+ 31 H011 no ..... .....
+ 31 H003 yes ....1 .....
+ 21 15 no ..... .....
+ 15 33 yes ..1.. .....
+ 33 H014 yes 0.... .....
+ 33 H017 no ..... .....
+ 15 12 yes ..... ....0
+ 12 H010 no ..... .....
+ 12 18 no ..... .....
+ 18 H033 yes 0.... .....
+ 18 H027 yes ..1.. 0....
+ 5 20 yes 0.... .....
+ 20 H029 no ..... .....
+ 20 4 yes ..... ....0
+ 4 H034 no ..... .....
+ 4 32 yes ....1 .....
+ 32 H022 no ..... .....
+ 32 23 yes ..... 0....
+ 23 H013 no ..... .....
+ 23 H019 yes ..... ....1
+
+
+
+
+
+ +--H035
+ +----------------------------------------------------------------------------------------------------22
+ ! +--H007
+ !
+ ! +--ANCE
+ ! +----------------------------------------35
+ ! ! +--H030
+ ! +----------------------------------------------------27
+ ! ! ! +--------------------------------------H025
+ ! ! ! !
+ ! ! +----25 +-----------------------------------H004
+-17 ! ! !
+ ! ! +--2 +--------------------------------H024
+ ! ! ! !
+ ! ! +-14 +-----------------------------H005
+ ! ! ! !
+ ! ! +-30 +--------------------------H008
+ ! ! ! !
+ ! ! +-19 +-----------------------H031
+ ! ! ! !
+ ! ! +-28 +--------------------H032
+ ! ! ! !
+ +-----1 +-24 +-----------------H016
+ ! ! !
+ ! +--7 +--------------H021
+ ! ! !
+ ! +-26 +-----------H002
+ ! ! !
+ ! +--8 +--H012
+ ! ! +----29
+ ! ! ! +--H009
+ ! +-16
+ ! ! +--H023
+ ! +-----6
+ ! +--H026
+ !
+ ! +--------------------------------------------------H006
+ ! !
+ +----------------------------------------------10 +-----------------------------------------------H028
+ ! !
+ ! ! +--H015
+ +-13 +-----------------------------------------9
+ ! ! +--H020
+ ! !
+ ! ! +--------------------------------------H001
+ +--3 !
+ ! ! +--------------------H018
+ ! ! !
+ ! ! ! +--H011
+ ! ! +-------------34 +-------------31
+ +----11 ! ! ! +--H003
+ ! ! ! !
+ ! ! +-21 +--H014
+ ! ! ! +-------33
+ ! ! ! ! +--H017
+ ! ! +----15
+ +--5 ! +-----H010
+ ! +----12
+ ! ! +--H033
+ ! +-18
+ ! +--H027
+ !
+ ! +-----------H029
+ +----------------------20
+ ! +--------H034
+ +--4
+ ! +-----H022
+ +-32
+ ! +--H013
+ +-23
+ +--H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 17 no ..... .....
+ 17 22 yes ...1. .....
+ 22 H035 yes ..... ....0
+ 22 H007 no ..... .....
+ 17 1 no ..... .....
+ 1 27 no ..... .....
+ 27 35 no ..... .....
+ 35 ANCE no ..... .....
+ 35 H030 yes ..... ...1.
+ 27 25 yes 0.... .....
+ 25 H025 no ..... .....
+ 25 2 yes ....1 .....
+ 2 H004 no ..... .....
+ 2 14 yes ..... 0....
+ 14 H024 yes ..... ...1.
+ 14 30 no ..... .....
+ 30 H005 yes ..... ....0
+ 30 19 no ..... .....
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+ 19 28 no ..... .....
+ 28 H031 yes ..... ..1..
+ 28 24 yes ...1. .....
+ 24 H032 yes ..... .1...
+ 24 7 no ..... .....
+ 7 H016 no ..... .....
+ 7 26 yes ..1.. .....
+ 26 H021 yes ..... ..1..
+ 26 8 yes 1.... .....
+ 8 H002 no ..... .....
+ 8 16 yes ....0 .....
+ 16 29 no ..... .....
+ 29 H012 no ..... .....
+ 29 H009 yes ..... ..1..
+ 16 6 yes ..... 1....
+ 6 H023 no ..... .....
+ 6 H026 yes 0.... .....
+ 1 10 yes .0... .....
+ 10 H006 no ..... .....
+ 10 13 yes ..... .1.1.
+ 13 H028 no ..... .....
+ 13 3 yes ..... ..1..
+ 3 9 no ..... .....
+ 9 H015 yes ..... ...0.
+ 9 H020 yes ..... ....0
+ 3 11 no ..... .....
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+ 5 34 no ..... .....
+ 34 H018 no ..... .....
+ 34 21 yes ...1. .....
+ 21 31 no ..... .....
+ 31 H011 no ..... .....
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+ 21 15 no ..... .....
+ 15 33 yes ..1.. .....
+ 33 H014 yes 0.... .....
+ 33 H017 no ..... .....
+ 15 12 yes ..... ....0
+ 12 H010 no ..... .....
+ 12 18 no ..... .....
+ 18 H033 yes 0.... .....
+ 18 H027 yes ..1.. 0....
+ 5 20 yes 0.... .....
+ 20 H029 no ..... .....
+ 20 4 yes ..... ....0
+ 4 H034 no ..... .....
+ 4 32 yes ....1 .....
+ 32 H022 no ..... .....
+ 32 23 yes ..... 0....
+ 23 H013 no ..... .....
+ 23 H019 yes ..... ....1
+
+
+
+
+
+ +--H035
+ +----------------------------------------------------------------------------------------------------22
+ ! +--H007
+ !
+ ! +--ANCE
+ ! +----------------------------------------35
+ ! ! +--H030
+ ! +----------------------------------------------------27
+ ! ! ! +--------------------------------------H025
+ ! ! ! !
+ ! ! +----25 +-----------------------------------H004
+-17 ! ! !
+ ! ! ! ! +-----H005
+ ! ! +--2 +-------------------------30
+ ! ! ! ! ! +--H031
+ ! ! ! ! +-28
+ ! ! +-19 +--H008
+ ! ! !
+ ! ! ! +-----------------------H024
+ ! ! ! !
+ ! ! +-------14 +--------------------H032
+ ! ! ! !
+ +-----1 +-24 +-----------------H016
+ ! ! !
+ ! +--7 +--------------H021
+ ! ! !
+ ! +-26 +-----------H002
+ ! ! !
+ ! +--8 +--H012
+ ! ! +----29
+ ! ! ! +--H009
+ ! +-16
+ ! ! +--H023
+ ! +-----6
+ ! +--H026
+ !
+ ! +--------------------------------------------------H006
+ ! !
+ +----------------------------------------------10 +-----------------------------------------------H028
+ ! !
+ ! ! +--H015
+ +-13 +-----------------------------------------9
+ ! ! +--H020
+ ! !
+ ! ! +--------------------------------------H001
+ +--3 !
+ ! ! +--------------------H018
+ ! ! !
+ ! ! ! +--H011
+ ! ! +-------------34 +-------------31
+ +----11 ! ! ! +--H003
+ ! ! ! !
+ ! ! +-21 +--H014
+ ! ! ! +-------33
+ ! ! ! ! +--H017
+ ! ! +----15
+ +--5 ! +-----H010
+ ! +----12
+ ! ! +--H033
+ ! +-18
+ ! +--H027
+ !
+ ! +-----------H029
+ +----------------------20
+ ! +--------H034
+ +--4
+ ! +-----H022
+ +-32
+ ! +--H013
+ +-23
+ +--H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 17 no ..... .....
+ 17 22 yes ...1. .....
+ 22 H035 yes ..... ....0
+ 22 H007 no ..... .....
+ 17 1 no ..... .....
+ 1 27 no ..... .....
+ 27 35 no ..... .....
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+ 30 H005 yes ..... ....0
+ 30 28 no ..... .....
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+ 19 14 no ..... .....
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+ 14 24 yes ...1. .....
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+ 23 H013 no ..... .....
+ 23 H019 yes ..... ....1
+
+
+
+
+
+ +--H035
+ +----------------------------------------22
+ ! +--H007
+ !
+ +----------------------------------------------------------17 +--------------------------------------H025
+ ! ! !
+ ! ! ! +-----------------------------------H004
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+ ! ! ! +-----H005
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+ ! ! ! !
+ ! +-14 +--------H024
+ ! !
+ ! ! +--------------------H032
+ ! ! !
+ ! +----------24 +-----------------H016
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+ ! +--8 +--H012
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+ ! ! ! +--H009
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+ ! ! +--H023
+ ! +-----6
+ ! +--H026
+ !
+ ! +--ANCE
+ ! +----------------------------------------------------35
+ ! ! +--H030
+ +----------------------------------------------27
+ ! +--------------------------------------------------H006
+ ! !
+ +----10 +-----------------------------------------------H028
+ ! !
+ ! ! +--H015
+ +-13 +-----------------------------------------9
+ ! ! +--H020
+ ! !
+ ! ! +--------------------------------------H001
+ +--3 !
+ ! ! +--------------------H018
+ ! ! !
+ ! ! ! +--H011
+ ! ! +-------------34 +-------------31
+ +----11 ! ! ! +--H003
+ ! ! ! !
+ ! ! +-21 +--H014
+ ! ! ! +-------33
+ ! ! ! ! +--H017
+ ! ! +----15
+ +--5 ! +-----H010
+ ! +----12
+ ! ! +--H033
+ ! +-18
+ ! +--H027
+ !
+ ! +-----------H029
+ +----------------------20
+ ! +--------H034
+ +--4
+ ! +-----H022
+ +-32
+ ! +--H013
+ +-23
+ +--H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 1 no ..... .....
+ 1 17 no ..... .....
+ 17 22 yes ...1. .....
+ 22 H035 yes ..... ....0
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+ 32 23 yes ..... 0....
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+ 23 H019 yes ..... ....1
+
+
+
+
+
+ +--H035
+ +----------------------------------------22
+ ! +--H007
+ +----------------------------------------------------------17
+ ! ! +--------------------------------------H025
+ ! ! !
+ ! +----25 +-----------------------------------H004
+ ! ! !
+ ! ! ! +-----H005
+ ! +--2 +-------------------------30
+ ! ! ! ! +--H031
+ ! ! ! +-28
+ ! +-19 +--H008
+ ! !
+ ! ! +-----------------------H024
+ ! ! !
+ ! +-------14 +--------------------H016
+ ! ! !
+ ! +--7 +-----------------H032
+--1 ! !
+ ! +-24 +--------------H021
+ ! ! !
+ ! +-26 +-----------H002
+ ! ! !
+ ! +--8 +--H012
+ ! ! +----29
+ ! ! ! +--H009
+ ! +-16
+ ! ! +--H023
+ ! +-----6
+ ! +--H026
+ !
+ ! +--ANCE
+ ! +----------------------------------------------------35
+ ! ! +--H030
+ +----------------------------------------------27
+ ! +--------------------------------------------------H006
+ ! !
+ +----10 +-----------------------------------------------H028
+ ! !
+ ! ! +--H015
+ +-13 +-----------------------------------------9
+ ! ! +--H020
+ ! !
+ ! ! +--------------------------------------H001
+ +--3 !
+ ! ! +--------------------H018
+ ! ! !
+ ! ! ! +--H011
+ ! ! +-------------34 +-------------31
+ +----11 ! ! ! +--H003
+ ! ! ! !
+ ! ! +-21 +--H014
+ ! ! ! +-------33
+ ! ! ! ! +--H017
+ ! ! +----15
+ +--5 ! +--H033
+ ! ! +-18
+ ! +----12 +--H010
+ ! !
+ ! +-----H027
+ !
+ ! +-----------H029
+ +----------------------20
+ ! +--------H034
+ +--4
+ ! +-----H022
+ +-32
+ ! +--H013
+ +-23
+ +--H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 1 no ..... .....
+ 1 17 no ..... .....
+ 17 22 yes ...1. .....
+ 22 H035 yes ..... ....0
+ 22 H007 no ..... .....
+ 17 25 yes 0.... .....
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+ 2 19 yes ..... 0....
+ 19 30 no ..... .....
+ 30 H005 yes ..... ....0
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+ 5 34 no ..... .....
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+ 15 12 yes ..... ....0
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+ 5 20 yes 0.... .....
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+ 4 32 yes ....1 .....
+ 32 H022 no ..... .....
+ 32 23 yes ..... 0....
+ 23 H013 no ..... .....
+ 23 H019 yes ..... ....1
+
+
+
+
+
+ +--------------------------------------H025
+ !
+ ! +-----------------------------------H004
+ +----------------------------------------------------------------25 !
+ ! ! ! +-----H005
+ ! ! ! +-30
+ ! +--2 ! ! +--H031
+ ! ! +----------------------19 +-28
+ ! ! ! ! +--H008
+ ! ! ! !
+ ! ! ! +--------H024
+ ! +-14
+ ! ! +--H032
+ ! ! +----------------24
+ ! ! ! +--H016
+ ! +-----------7
+ ! ! +--------------H021
+--1 ! !
+ ! +----26 +-----------H002
+ ! ! !
+ ! +--8 +--H012
+ ! ! +----29
+ ! ! ! +--H009
+ ! +-16
+ ! ! +--H023
+ ! +-----6
+ ! +--H026
+ !
+ ! +--H035
+ ! +----------------------------------------------------------22
+ ! ! +--H007
+ ! !
+ +----------------------------------------17 +--ANCE
+ ! +----------------------------------------------------35
+ ! ! +--H030
+ +----27
+ ! +--------------------------------------------------H006
+ ! !
+ +----10 +-----------------------------------------------H028
+ ! !
+ ! ! +--H015
+ +-13 +-----------------------------------------9
+ ! ! +--H020
+ ! !
+ ! ! +--------------------------------------H001
+ +--3 !
+ ! ! +--------------------H018
+ ! ! !
+ ! ! ! +--H011
+ ! ! +-------------34 +-------------31
+ +----11 ! ! ! +--H003
+ ! ! ! !
+ ! ! +-21 +--H014
+ ! ! ! +-------33
+ ! ! ! ! +--H017
+ ! ! +----15
+ +--5 ! +-----H010
+ ! +----12
+ ! ! +--H033
+ ! +-18
+ ! +--H027
+ !
+ ! +-----------H029
+ +----------------------20
+ ! +--------H034
+ +--4
+ ! +-----H022
+ +-32
+ ! +--H013
+ +-23
+ +--H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 1 no ..... .....
+ 1 25 yes 0.... .....
+ 25 H025 no ..... .....
+ 25 2 yes ....1 .....
+ 2 H004 no ..... .....
+ 2 14 yes ..... 0....
+ 14 19 no ..... .....
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+ 14 7 yes ...1. .....
+ 7 24 no ..... .....
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+ 7 26 yes ..1.. .....
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+ 4 32 yes ....1 .....
+ 32 H022 no ..... .....
+ 32 23 yes ..... 0....
+ 23 H013 no ..... .....
+ 23 H019 yes ..... ....1
+
+
+
+
+
+ +--------------------------------------H025
+ !
+ ! +-----------------------------------H004
+ +----------------------------------------------------------------25 !
+ ! ! ! +-----H005
+ ! ! ! +-30
+ ! +--2 ! ! +--H031
+ ! ! +----------------------19 +-28
+ ! ! ! ! +--H008
+ ! ! ! !
+ ! +-14 +--------H024
+ ! !
+ ! ! +--------------------H032
+ ! ! !
+ ! +----------24 +-----------------H016
+ ! ! !
+ ! +--7 +--------------H021
+--1 ! !
+ ! +-26 +-----------H002
+ ! ! !
+ ! +--8 +--H012
+ ! ! +----29
+ ! ! ! +--H009
+ ! +-16
+ ! ! +--H023
+ ! +-----6
+ ! +--H026
+ !
+ ! +--H035
+ ! +----------------------------------------------------------22
+ ! ! +--H007
+ ! !
+ +----------------------------------------17 +--ANCE
+ ! +----------------------------------------------------35
+ ! ! +--H030
+ +----27
+ ! +--------------------------------------------------H006
+ ! !
+ +----10 +-----------------------------------------------H028
+ ! !
+ ! ! +--H015
+ +-13 +-----------------------------------------9
+ ! ! +--H020
+ ! !
+ ! ! +--------------------------------------H001
+ +--3 !
+ ! ! +--------------------H018
+ ! ! !
+ ! ! ! +--H011
+ ! ! +-------------34 +-------------31
+ +----11 ! ! ! +--H003
+ ! ! ! !
+ ! ! +-21 +--H014
+ ! ! ! +-------33
+ ! ! ! ! +--H017
+ ! ! +----15
+ +--5 ! +-----H010
+ ! +----12
+ ! ! +--H033
+ ! +-18
+ ! +--H027
+ !
+ ! +-----------H029
+ +----------------------20
+ ! +--------H034
+ +--4
+ ! +-----H022
+ +-32
+ ! +--H013
+ +-23
+ +--H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 1 no ..... .....
+ 1 25 yes 0.... .....
+ 25 H025 no ..... .....
+ 25 2 yes ....1 .....
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+ 2 14 yes ..... 0....
+ 14 19 no ..... .....
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+ 30 H005 yes ..... ....0
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+ 28 H008 no ..... .....
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+ 14 24 yes ...1. .....
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+ 24 7 no ..... .....
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+ 7 26 yes ..1.. .....
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+ 26 8 yes 1.... .....
+ 8 H002 no ..... .....
+ 8 16 yes ....0 .....
+ 16 29 no ..... .....
+ 29 H012 no ..... .....
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+ 6 H023 no ..... .....
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+ 1 17 no ..... .....
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+ 22 H007 no ..... .....
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+ 27 35 no ..... .....
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+ 10 H006 no ..... .....
+ 10 13 yes ..... .1.1.
+ 13 H028 no ..... .....
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+ 3 9 no ..... .....
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+ 3 11 no ..... .....
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+ 5 34 no ..... .....
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+ 21 31 no ..... .....
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+ 33 H017 no ..... .....
+ 15 12 yes ..... ....0
+ 12 H010 no ..... .....
+ 12 18 no ..... .....
+ 18 H033 yes 0.... .....
+ 18 H027 yes ..1.. 0....
+ 5 20 yes 0.... .....
+ 20 H029 no ..... .....
+ 20 4 yes ..... ....0
+ 4 H034 no ..... .....
+ 4 32 yes ....1 .....
+ 32 H022 no ..... .....
+ 32 23 yes ..... 0....
+ 23 H013 no ..... .....
+ 23 H019 yes ..... ....1
+
+
+
+
+
+ +--------------------------------------H025
+ !
+ ! +-----------------------------------H004
+ +----------------------------------------------------------------25 !
+ ! ! ! +-----H005
+ ! ! ! +-30
+ ! +--2 ! ! +--H031
+ ! ! +----------------------19 +-28
+ ! ! ! ! +--H008
+ ! ! ! !
+ ! +-14 +--------H024
+ ! !
+ ! ! +--------------------H016
+ ! ! !
+ ! +-----------7 +-----------------H032
+ ! ! !
+ ! +-24 +--------------H021
+--1 ! !
+ ! +-26 +-----------H002
+ ! ! !
+ ! +--8 +--H012
+ ! ! +----29
+ ! ! ! +--H009
+ ! +-16
+ ! ! +--H023
+ ! +-----6
+ ! +--H026
+ !
+ ! +--H035
+ ! +----------------------------------------------------------22
+ ! ! +--H007
+ ! !
+ +----------------------------------------17 +--ANCE
+ ! +----------------------------------------------------35
+ ! ! +--H030
+ +----27
+ ! +--------------------------------------------------H006
+ ! !
+ +----10 +-----------------------------------------------H028
+ ! !
+ ! ! +--H015
+ +-13 +-----------------------------------------9
+ ! ! +--H020
+ ! !
+ ! ! +--------------------------------------H001
+ +--3 !
+ ! ! +--------------------H018
+ ! ! !
+ ! ! ! +--H011
+ ! ! +-------------34 +-------------31
+ +----11 ! ! ! +--H003
+ ! ! ! !
+ ! ! +-21 +--H014
+ ! ! ! +-------33
+ ! ! ! ! +--H017
+ ! ! +----15
+ +--5 ! +-----H010
+ ! +----12
+ ! ! +--H033
+ ! +-18
+ ! +--H027
+ !
+ ! +-----------H029
+ +----------------------20
+ ! +--------H034
+ +--4
+ ! +-----H022
+ +-32
+ ! +--H013
+ +-23
+ +--H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 1 no ..... .....
+ 1 25 yes 0.... .....
+ 25 H025 no ..... .....
+ 25 2 yes ....1 .....
+ 2 H004 no ..... .....
+ 2 14 yes ..... 0....
+ 14 19 no ..... .....
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+ 30 H005 yes ..... ....0
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+ 14 7 yes ...1. .....
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+ 7 24 no ..... .....
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+ 24 26 yes ..1.. .....
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+ 8 H002 no ..... .....
+ 8 16 yes ....0 .....
+ 16 29 no ..... .....
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+ 6 H023 no ..... .....
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+ 1 17 no ..... .....
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+ 17 27 no ..... .....
+ 27 35 no ..... .....
+ 35 ANCE no ..... .....
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+ 27 10 yes .0... .....
+ 10 H006 no ..... .....
+ 10 13 yes ..... .1.1.
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+ 3 9 no ..... .....
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+ 3 11 no ..... .....
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+ 5 34 no ..... .....
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+ 34 21 yes ...1. .....
+ 21 31 no ..... .....
+ 31 H011 no ..... .....
+ 31 H003 yes ....1 .....
+ 21 15 no ..... .....
+ 15 33 yes ..1.. .....
+ 33 H014 yes 0.... .....
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+ 15 12 yes ..... ....0
+ 12 H010 no ..... .....
+ 12 18 no ..... .....
+ 18 H033 yes 0.... .....
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+ 5 20 yes 0.... .....
+ 20 H029 no ..... .....
+ 20 4 yes ..... ....0
+ 4 H034 no ..... .....
+ 4 32 yes ....1 .....
+ 32 H022 no ..... .....
+ 32 23 yes ..... 0....
+ 23 H013 no ..... .....
+ 23 H019 yes ..... ....1
+
+
+
+
+
+ +--------------------------------------H025
+ !
+ +----------------------------------------------------------------25 +-----------------------------------H004
+ ! ! !
+ ! +--2 +--------------------------------H024
+ ! ! !
+ ! ! ! +-----H005
+ ! +-14 +----------------------30
+ ! ! ! ! +--H031
+ ! ! ! +-28
+ ! ! ! +--H008
+ ! +-19
+ ! ! +--H032
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+ ! ! ! +--H009
+ ! +-16
+ ! ! +--H023
+ ! +-----6
+ ! +--H026
+ !
+ ! +--H035
+ ! +----------------------------------------------------------22
+ ! ! +--H007
+ ! !
+ +----------------------------------------17 +--ANCE
+ ! +----------------------------------------------------35
+ ! ! +--H030
+ +----27
+ ! +--------------------------------------------------H006
+ ! !
+ +----10 +-----------------------------------------------H028
+ ! !
+ ! ! +--H015
+ +-13 +-----------------------------------------9
+ ! ! +--H020
+ ! !
+ ! ! +--------------------------------------H001
+ +--3 !
+ ! ! +--------------------H018
+ ! ! !
+ ! ! ! +--H011
+ ! ! +-------------34 +-------------31
+ +----11 ! ! ! +--H003
+ ! ! ! !
+ ! ! +-21 +--H014
+ ! ! ! +-------33
+ ! ! ! ! +--H017
+ ! ! +----15
+ +--5 ! +-----H010
+ ! +----12
+ ! ! +--H033
+ ! +-18
+ ! +--H027
+ !
+ ! +-----------H029
+ +----------------------20
+ ! +--------H034
+ +--4
+ ! +-----H022
+ +-32
+ ! +--H013
+ +-23
+ +--H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 1 no ..... .....
+ 1 25 yes 0.... .....
+ 25 H025 no ..... .....
+ 25 2 yes ....1 .....
+ 2 H004 no ..... .....
+ 2 14 yes ..... 0....
+ 14 H024 yes ..... ...1.
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+ 7 24 no ..... .....
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+ 32 23 yes ..... 0....
+ 23 H013 no ..... .....
+ 23 H019 yes ..... ....1
+
+
+
+
+
+ +--------------------------------------H025
+ !
+ +----------------------------------------------------------------25 +-----------------------------------H004
+ ! ! !
+ ! +--2 +--H031
+ ! ! +----------------------------28
+ ! ! ! +--H008
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+ ! ! +--------------------------H005
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+ ! +----30 +-----------------------H024
+ ! ! !
+ ! +-14 +--H032
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+ ! +--7
+ ! ! +--------------H021
+--1 ! !
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+ ! +--8 +--H012
+ ! ! +----29
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+ ! +-16
+ ! ! +--H023
+ ! +-----6
+ ! +--H026
+ !
+ ! +--H035
+ ! +----------------------------------------------------------22
+ ! ! +--H007
+ ! !
+ +----------------------------------------17 +--ANCE
+ ! +----------------------------------------------------35
+ ! ! +--H030
+ +----27
+ ! +--------------------------------------------------H006
+ ! !
+ +----10 +-----------------------------------------------H028
+ ! !
+ ! ! +--H015
+ +-13 +-----------------------------------------9
+ ! ! +--H020
+ ! !
+ ! ! +--------------------------------------H001
+ +--3 !
+ ! ! +--------------------H018
+ ! ! !
+ ! ! ! +--H011
+ ! ! +-------------34 +-------------31
+ +----11 ! ! ! +--H003
+ ! ! ! !
+ ! ! +-21 +--H014
+ ! ! ! +-------33
+ ! ! ! ! +--H017
+ ! ! +----15
+ +--5 ! +-----H010
+ ! +----12
+ ! ! +--H033
+ ! +-18
+ ! +--H027
+ !
+ ! +-----------H029
+ +----------------------20
+ ! +--------H034
+ +--4
+ ! +-----H022
+ +-32
+ ! +--H013
+ +-23
+ +--H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 1 no ..... .....
+ 1 25 yes 0.... .....
+ 25 H025 no ..... .....
+ 25 2 yes ....1 .....
+ 2 H004 no ..... .....
+ 2 19 yes ..... 0....
+ 19 28 no ..... .....
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+ 7 24 no ..... .....
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+ 8 H002 no ..... .....
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+ 5 34 no ..... .....
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+ 12 H010 no ..... .....
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+ 4 32 yes ....1 .....
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+ 32 23 yes ..... 0....
+ 23 H013 no ..... .....
+ 23 H019 yes ..... ....1
+
+
+
+
+
+ +--------------------------------------H025
+ !
+ +----------------------------------------------------------------25 +-----------------------------------H004
+ ! ! !
+ ! +--2 +--------------------------------H005
+ ! ! !
+ ! +-30 +--H031
+ ! ! +-------------------------28
+ ! ! ! +--H008
+ ! +-19
+ ! ! +-----------------------H024
+ ! ! !
+ ! +----14 +--H032
+ ! ! +----------------24
+ ! ! ! +--H016
+ ! +--7
+ ! ! +--------------H021
+--1 ! !
+ ! +----26 +-----------H002
+ ! ! !
+ ! +--8 +--H012
+ ! ! +----29
+ ! ! ! +--H009
+ ! +-16
+ ! ! +--H023
+ ! +-----6
+ ! +--H026
+ !
+ ! +--H035
+ ! +----------------------------------------------------------22
+ ! ! +--H007
+ ! !
+ +----------------------------------------17 +--ANCE
+ ! +----------------------------------------------------35
+ ! ! +--H030
+ +----27
+ ! +--------------------------------------------------H006
+ ! !
+ +----10 +-----------------------------------------------H028
+ ! !
+ ! ! +--H015
+ +-13 +-----------------------------------------9
+ ! ! +--H020
+ ! !
+ ! ! +--------------------------------------H001
+ +--3 !
+ ! ! +--------------------H018
+ ! ! !
+ ! ! ! +--H011
+ ! ! +-------------34 +-------------31
+ +----11 ! ! ! +--H003
+ ! ! ! !
+ ! ! +-21 +--H014
+ ! ! ! +-------33
+ ! ! ! ! +--H017
+ ! ! +----15
+ +--5 ! +-----H010
+ ! +----12
+ ! ! +--H033
+ ! +-18
+ ! +--H027
+ !
+ ! +-----------H029
+ +----------------------20
+ ! +--------H034
+ +--4
+ ! +-----H022
+ +-32
+ ! +--H013
+ +-23
+ +--H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 1 no ..... .....
+ 1 25 yes 0.... .....
+ 25 H025 no ..... .....
+ 25 2 yes ....1 .....
+ 2 H004 no ..... .....
+ 2 30 yes ..... 0....
+ 30 H005 yes ..... ....0
+ 30 19 no ..... .....
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+ 19 14 no ..... .....
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+ 14 7 yes ...1. .....
+ 7 24 no ..... .....
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+ 5 34 no ..... .....
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+ 21 31 no ..... .....
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+ 15 12 yes ..... ....0
+ 12 H010 no ..... .....
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+ 4 H034 no ..... .....
+ 4 32 yes ....1 .....
+ 32 H022 no ..... .....
+ 32 23 yes ..... 0....
+ 23 H013 no ..... .....
+ 23 H019 yes ..... ....1
+
+
+
+
+
+ +--------------------------------------H025
+ !
+ +----------------------------------------------------------------25 +-----------------------------------H004
+ ! ! !
+ ! ! ! +-----H005
+ ! +--2 +-------------------------30
+ ! ! ! ! +--H031
+ ! ! ! +-28
+ ! +-19 +--H008
+ ! !
+ ! ! +-----------------------H024
+ ! ! !
+ ! +-------14 +--H032
+ ! ! +----------------24
+ ! ! ! +--H016
+ ! +--7
+ ! ! +--------------H021
+--1 ! !
+ ! +----26 +-----------H002
+ ! ! !
+ ! +--8 +--H012
+ ! ! +----29
+ ! ! ! +--H009
+ ! +-16
+ ! ! +--H023
+ ! +-----6
+ ! +--H026
+ !
+ ! +--H035
+ ! +----------------------------------------------------------22
+ ! ! +--H007
+ ! !
+ +----------------------------------------17 +--ANCE
+ ! +----------------------------------------------------35
+ ! ! +--H030
+ +----27
+ ! +--------------------------------------------------H006
+ ! !
+ +----10 +-----------------------------------------------H028
+ ! !
+ ! ! +--H015
+ +-13 +-----------------------------------------9
+ ! ! +--H020
+ ! !
+ ! ! +--------------------------------------H001
+ +--3 !
+ ! ! +--------------------H018
+ ! ! !
+ ! ! ! +--H011
+ ! ! +-------------34 +-------------31
+ +----11 ! ! ! +--H003
+ ! ! ! !
+ ! ! +-21 +--H014
+ ! ! ! +-------33
+ ! ! ! ! +--H017
+ ! ! +----15
+ +--5 ! +-----H010
+ ! +----12
+ ! ! +--H033
+ ! +-18
+ ! +--H027
+ !
+ ! +-----------H029
+ +----------------------20
+ ! +--------H034
+ +--4
+ ! +-----H022
+ +-32
+ ! +--H013
+ +-23
+ +--H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 1 no ..... .....
+ 1 25 yes 0.... .....
+ 25 H025 no ..... .....
+ 25 2 yes ....1 .....
+ 2 H004 no ..... .....
+ 2 19 yes ..... 0....
+ 19 30 no ..... .....
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+ 19 14 no ..... .....
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+ 14 7 yes ...1. .....
+ 7 24 no ..... .....
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+ 16 29 no ..... .....
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+ 27 35 no ..... .....
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+ 3 11 no ..... .....
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+ 5 34 no ..... .....
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+ 21 31 no ..... .....
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+ 12 H010 no ..... .....
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+ 5 20 yes 0.... .....
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+ 4 H034 no ..... .....
+ 4 32 yes ....1 .....
+ 32 H022 no ..... .....
+ 32 23 yes ..... 0....
+ 23 H013 no ..... .....
+ 23 H019 yes ..... ....1
+
+
+
+
+
+ +--------------------------------------H025
+ !
+ +----------------------------------------------------------------25 +-----------------------------------H004
+ ! ! !
+ ! ! ! +-----H005
+ ! +--2 +-------------------------30
+ ! ! ! ! +--H031
+ ! ! ! +-28
+ ! +-19 +--H008
+ ! !
+ ! ! +-----------------------H024
+ ! ! !
+ ! +-------14 +--H032
+ ! ! +----------------24
+ ! ! ! +--H016
+ ! +--7
+ ! ! +--------------H021
+--1 ! !
+ ! +----26 +-----------H002
+ ! ! !
+ ! +--8 +--H012
+ ! ! +----29
+ ! ! ! +--H009
+ ! +-16
+ ! ! +--H023
+ ! +-----6
+ ! +--H026
+ !
+ ! +--H035
+ ! +----------------------------------------------------------22
+ ! ! +--H007
+ ! !
+ +----------------------------------------17 +--ANCE
+ ! +----------------------------------------------------35
+ ! ! +--H030
+ +----27
+ ! +--------------------------------------------------H006
+ ! !
+ +----10 +-----------------------------------------------H028
+ ! !
+ ! ! +--H015
+ +-13 +-----------------------------------------9
+ ! ! +--H020
+ ! !
+ ! ! +--------------------------------------H001
+ +--3 !
+ ! ! +--------------------H018
+ ! ! !
+ ! ! +-------------34 +-----------------H003
+ +----11 ! ! !
+ ! ! +-21 +--------------H011
+ ! ! ! !
+ ! ! +-31 +--H014
+ ! ! ! +-------33
+ ! ! ! ! +--H017
+ +--5 +-15
+ ! ! +-----H010
+ ! +----12
+ ! ! +--H033
+ ! +-18
+ ! +--H027
+ !
+ ! +-----------H029
+ +----------------------20
+ ! +--------H034
+ +--4
+ ! +-----H022
+ +-32
+ ! +--H013
+ +-23
+ +--H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 1 no ..... .....
+ 1 25 yes 0.... .....
+ 25 H025 no ..... .....
+ 25 2 yes ....1 .....
+ 2 H004 no ..... .....
+ 2 19 yes ..... 0....
+ 19 30 no ..... .....
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+ 30 28 no ..... .....
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+ 28 H008 no ..... .....
+ 19 14 no ..... .....
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+ 14 7 yes ...1. .....
+ 7 24 no ..... .....
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+ 26 8 yes 1.... .....
+ 8 H002 no ..... .....
+ 8 16 yes ....0 .....
+ 16 29 no ..... .....
+ 29 H012 no ..... .....
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+ 16 6 yes ..... 1....
+ 6 H023 no ..... .....
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+ 1 17 no ..... .....
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+ 22 H007 no ..... .....
+ 17 27 no ..... .....
+ 27 35 no ..... .....
+ 35 ANCE no ..... .....
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+ 27 10 yes .0... .....
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+ 10 13 yes ..... .1.1.
+ 13 H028 no ..... .....
+ 13 3 yes ..... ..1..
+ 3 9 no ..... .....
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+ 3 11 no ..... .....
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+ 5 34 no ..... .....
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+ 21 31 no ..... .....
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+ 31 15 no ..... .....
+ 15 33 yes ..1.. .....
+ 33 H014 yes 0.... .....
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+ 15 12 yes ..... ....0
+ 12 H010 no ..... .....
+ 12 18 no ..... .....
+ 18 H033 yes 0.... .....
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+ 5 20 yes 0.... .....
+ 20 H029 no ..... .....
+ 20 4 yes ..... ....0
+ 4 H034 no ..... .....
+ 4 32 yes ....1 .....
+ 32 H022 no ..... .....
+ 32 23 yes ..... 0....
+ 23 H013 no ..... .....
+ 23 H019 yes ..... ....1
+
+
+
+
+
+ +--------------------------------------H025
+ !
+ +----------------------------------------------------------------25 +-----------------------------------H004
+ ! ! !
+ ! ! ! +-----H005
+ ! +--2 +-------------------------30
+ ! ! ! ! +--H031
+ ! ! ! +-28
+ ! +-19 +--H008
+ ! !
+ ! ! +-----------------------H024
+ ! ! !
+ ! +-------14 +--H032
+ ! ! +----------------24
+ ! ! ! +--H016
+ ! +--7
+ ! ! +--------------H021
+--1 ! !
+ ! +----26 +-----------H002
+ ! ! !
+ ! +--8 +--H012
+ ! ! +----29
+ ! ! ! +--H009
+ ! +-16
+ ! ! +--H023
+ ! +-----6
+ ! +--H026
+ !
+ ! +--H035
+ ! +----------------------------------------------------------22
+ ! ! +--H007
+ ! !
+ +----------------------------------------17 +--ANCE
+ ! +----------------------------------------------------35
+ ! ! +--H030
+ +----27
+ ! +--------------------------------------------------H006
+ ! !
+ +----10 +-----------------------------------------------H028
+ ! !
+ ! ! +--H015
+ +-13 +-----------------------------------------9
+ ! ! +--H020
+ ! !
+ ! ! +--------------------------------------H001
+ +--3 !
+ ! ! +--------------------H018
+ ! ! !
+ ! ! +-------------34 +-----------------H011
+ +----11 ! ! !
+ ! ! +-31 +--------------H003
+ ! ! ! !
+ ! ! +-21 +--H014
+ ! ! ! +-------33
+ ! ! ! ! +--H017
+ +--5 +-15
+ ! ! +-----H010
+ ! +----12
+ ! ! +--H033
+ ! +-18
+ ! +--H027
+ !
+ ! +-----------H029
+ +----------------------20
+ ! +--------H034
+ +--4
+ ! +-----H022
+ +-32
+ ! +--H013
+ +-23
+ +--H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 1 no ..... .....
+ 1 25 yes 0.... .....
+ 25 H025 no ..... .....
+ 25 2 yes ....1 .....
+ 2 H004 no ..... .....
+ 2 19 yes ..... 0....
+ 19 30 no ..... .....
+ 30 H005 yes ..... ....0
+ 30 28 no ..... .....
+ 28 H031 yes ..... ..1..
+ 28 H008 no ..... .....
+ 19 14 no ..... .....
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+ 14 7 yes ...1. .....
+ 7 24 no ..... .....
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+ 7 26 yes ..1.. .....
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+ 26 8 yes 1.... .....
+ 8 H002 no ..... .....
+ 8 16 yes ....0 .....
+ 16 29 no ..... .....
+ 29 H012 no ..... .....
+ 29 H009 yes ..... ..1..
+ 16 6 yes ..... 1....
+ 6 H023 no ..... .....
+ 6 H026 yes 0.... .....
+ 1 17 no ..... .....
+ 17 22 yes ...1. .....
+ 22 H035 yes ..... ....0
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+ 27 35 no ..... .....
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+ 13 H028 no ..... .....
+ 13 3 yes ..... ..1..
+ 3 9 no ..... .....
+ 9 H015 yes ..... ...0.
+ 9 H020 yes ..... ....0
+ 3 11 no ..... .....
+ 11 H001 no ..... .....
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+ 5 34 no ..... .....
+ 34 H018 no ..... .....
+ 34 31 yes ...1. .....
+ 31 H011 no ..... .....
+ 31 21 no ..... .....
+ 21 H003 yes ....1 .....
+ 21 15 no ..... .....
+ 15 33 yes ..1.. .....
+ 33 H014 yes 0.... .....
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+ 12 H010 no ..... .....
+ 12 18 no ..... .....
+ 18 H033 yes 0.... .....
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+ 5 20 yes 0.... .....
+ 20 H029 no ..... .....
+ 20 4 yes ..... ....0
+ 4 H034 no ..... .....
+ 4 32 yes ....1 .....
+ 32 H022 no ..... .....
+ 32 23 yes ..... 0....
+ 23 H013 no ..... .....
+ 23 H019 yes ..... ....1
+
+
+
+
+
+ +--------------------------------------H025
+ !
+ +----------------------------------------------------------------25 +-----------------------------------H004
+ ! ! !
+ ! +--2 +--------------------------------H005
+ ! ! !
+ ! +-30 +-----------------------------H008
+ ! ! !
+ ! +-19 +--------------------------H031
+ ! ! !
+ ! +-28 +-----------------------H024
+ ! ! !
+ ! +-14 +--H032
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+ ! ! ! +--H016
+ ! +--7
+ ! ! +--------------H021
+--1 ! !
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+ ! +--8 +--H012
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+ ! ! ! +--H009
+ ! +-16
+ ! ! +--H023
+ ! +-----6
+ ! +--H026
+ !
+ ! +--H035
+ ! +----------------------------------------------------------22
+ ! ! +--H007
+ ! !
+ +----------------------------------------17 +--ANCE
+ ! +----------------------------------------------------35
+ ! ! +--H030
+ +----27
+ ! +--------------------------------------------------H006
+ ! !
+ +----10 +-----------------------------------------------H028
+ ! !
+ ! ! +--H015
+ +-13 +-----------------------------------------9
+ ! ! +--H020
+ ! !
+ ! ! +--------------------------------------H001
+ +--3 !
+ ! ! +--------------------H018
+ ! ! !
+ ! ! ! +--H011
+ ! ! +-------------34 +-------------31
+ +----11 ! ! ! +--H003
+ ! ! ! !
+ ! ! +-21 +--H014
+ ! ! ! +-------33
+ ! ! ! ! +--H017
+ ! ! +----15
+ +--5 ! +-----H010
+ ! +----12
+ ! ! +--H033
+ ! +-18
+ ! +--H027
+ !
+ ! +-----------H029
+ +----------------------20
+ ! +--------H034
+ +--4
+ ! +-----H022
+ +-32
+ ! +--H013
+ +-23
+ +--H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 1 no ..... .....
+ 1 25 yes 0.... .....
+ 25 H025 no ..... .....
+ 25 2 yes ....1 .....
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+ 2 30 yes ..... 0....
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+ 28 14 no ..... .....
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+ 7 24 no ..... .....
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+ 4 32 yes ....1 .....
+ 32 H022 no ..... .....
+ 32 23 yes ..... 0....
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+ 23 H019 yes ..... ....1
+
+
+
+
+
+ +--------------------------------------H025
+ !
+ +----------------------------------------------------------------25 +-----------------------------------H004
+ ! ! !
+ ! +--2 +--------------------------------H005
+ ! ! !
+ ! +-30 +-----------------------------H031
+ ! ! !
+ ! +-28 +--------------------------H008
+ ! ! !
+ ! +-19 +-----------------------H024
+ ! ! !
+ ! +-14 +--H032
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+ ! ! ! +--H016
+ ! +--7
+ ! ! +--------------H021
+--1 ! !
+ ! +----26 +-----------H002
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+ ! +--8 +--H012
+ ! ! +----29
+ ! ! ! +--H009
+ ! +-16
+ ! ! +--H023
+ ! +-----6
+ ! +--H026
+ !
+ ! +--H035
+ ! +----------------------------------------------------------22
+ ! ! +--H007
+ ! !
+ +----------------------------------------17 +--ANCE
+ ! +----------------------------------------------------35
+ ! ! +--H030
+ +----27
+ ! +--------------------------------------------------H006
+ ! !
+ +----10 +-----------------------------------------------H028
+ ! !
+ ! ! +--H015
+ +-13 +-----------------------------------------9
+ ! ! +--H020
+ ! !
+ ! ! +--------------------------------------H001
+ +--3 !
+ ! ! +--------------------H018
+ ! ! !
+ ! ! ! +--H011
+ ! ! +-------------34 +-------------31
+ +----11 ! ! ! +--H003
+ ! ! ! !
+ ! ! +-21 +--H014
+ ! ! ! +-------33
+ ! ! ! ! +--H017
+ ! ! +----15
+ +--5 ! +-----H010
+ ! +----12
+ ! ! +--H033
+ ! +-18
+ ! +--H027
+ !
+ ! +-----------H029
+ +----------------------20
+ ! +--------H034
+ +--4
+ ! +-----H022
+ +-32
+ ! +--H013
+ +-23
+ +--H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 1 no ..... .....
+ 1 25 yes 0.... .....
+ 25 H025 no ..... .....
+ 25 2 yes ....1 .....
+ 2 H004 no ..... .....
+ 2 30 yes ..... 0....
+ 30 H005 yes ..... ....0
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+ 28 19 no ..... .....
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+ 19 14 no ..... .....
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+ 14 7 yes ...1. .....
+ 7 24 no ..... .....
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+ 7 26 yes ..1.. .....
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+ 16 29 no ..... .....
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+ 13 3 yes ..... ..1..
+ 3 9 no ..... .....
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+ 4 32 yes ....1 .....
+ 32 H022 no ..... .....
+ 32 23 yes ..... 0....
+ 23 H013 no ..... .....
+ 23 H019 yes ..... ....1
+
+
+
+
+
+ +--H035
+ +----------------------------------------------------------------------------------------------------22
+ ! +--H007
+ !
+ ! +--------------------------------------H025
+ ! !
+ ! +----------------------------------------------------------25 +-----------------------------------H004
+ ! ! ! !
+ ! ! ! ! +-----H005
+ ! ! +--2 +-------------------------30
+ ! ! ! ! ! +--H031
+-17 ! ! ! +-28
+ ! ! +-19 +--H008
+ ! ! !
+ ! ! ! +-----------------------H024
+ ! ! ! !
+ ! ! +-------14 +--H032
+ ! ! ! +----------------24
+ ! ! ! ! +--H016
+ ! ! +--7
+ ! ! ! +--------------H021
+ +-----1 ! !
+ ! +----26 +-----------H002
+ ! ! !
+ ! +--8 +--H012
+ ! ! +----29
+ ! ! ! +--H009
+ ! +-16
+ ! ! +--H023
+ ! +-----6
+ ! +--H026
+ !
+ ! +--ANCE
+ ! +----------------------------------------------------35
+ ! ! +--H030
+ ! !
+ +----------------------------------------27 +--------------------------------------------------H006
+ ! !
+ ! ! +-----------------------------------------------H028
+ +----10 !
+ ! ! +-----H001
+ ! ! +-------------------------------------11
+ ! ! ! ! +--H015
+ +-13 ! +--9
+ ! ! +--H020
+ ! !
+ ! ! +--------------------H018
+ ! ! !
+ +--3 ! +--H011
+ ! +-------------34 +-------------31
+ ! ! ! ! +--H003
+ ! ! ! !
+ ! ! +-21 +--H014
+ ! ! ! +-------33
+ ! ! ! ! +--H017
+ ! ! +----15
+ +--------5 ! +-----H010
+ ! +----12
+ ! ! +--H033
+ ! +-18
+ ! +--H027
+ !
+ ! +-----------H029
+ +----------------------20
+ ! +--------H034
+ +--4
+ ! +-----H022
+ +-32
+ ! +--H013
+ +-23
+ +--H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 17 no ..... .....
+ 17 22 yes ...1. .....
+ 22 H035 yes ..... ....0
+ 22 H007 no ..... .....
+ 17 1 no ..... .....
+ 1 25 yes 0.... .....
+ 25 H025 no ..... .....
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+ 2 19 yes ..... 0....
+ 19 30 no ..... .....
+ 30 H005 yes ..... ....0
+ 30 28 no ..... .....
+ 28 H031 yes ..... ..1..
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+ 19 14 no ..... .....
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+ 1 27 no ..... .....
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+ 5 34 no ..... .....
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+ 4 32 yes ....1 .....
+ 32 H022 no ..... .....
+ 32 23 yes ..... 0....
+ 23 H013 no ..... .....
+ 23 H019 yes ..... ....1
+
+
+
+
+
+ +--H035
+ +----------------------------------------22
+ ! +--H007
+ +----------------------------------------------------------17
+ ! ! +--------------------------------------H025
+ ! ! !
+ ! +----25 +-----------------------------------H004
+ ! ! !
+ ! ! ! +-----H005
+ ! +--2 +-------------------------30
+ ! ! ! ! +--H031
+ ! ! ! +-28
+ ! +-19 +--H008
+ ! !
+ ! ! +-----------------------H024
+ ! ! !
+ ! +-------14 +--H032
+ ! ! +----------------24
+ ! ! ! +--H016
+--1 +--7
+ ! ! +--------------H021
+ ! ! !
+ ! +----26 +-----------H002
+ ! ! !
+ ! +--8 +--H012
+ ! ! +----29
+ ! ! ! +--H009
+ ! +-16
+ ! ! +--H023
+ ! +-----6
+ ! +--H026
+ !
+ ! +--ANCE
+ ! +----------------------------------------------------35
+ ! ! +--H030
+ ! !
+ +----------------------------------------------27 +--------------------------------------------------H006
+ ! !
+ ! ! +-----------------------------------------------H028
+ +----10 !
+ ! ! +-----H001
+ ! ! +-------------------------------------11
+ ! ! ! ! +--H015
+ +-13 ! +--9
+ ! ! +--H020
+ ! !
+ ! ! +--------------------H018
+ ! ! !
+ +--3 ! +--H011
+ ! +-------------34 +-------------31
+ ! ! ! ! +--H003
+ ! ! ! !
+ ! ! +-21 +--H014
+ ! ! ! +-------33
+ ! ! ! ! +--H017
+ ! ! +----15
+ +--------5 ! +-----H010
+ ! +----12
+ ! ! +--H033
+ ! +-18
+ ! +--H027
+ !
+ ! +-----------H029
+ +----------------------20
+ ! +--------H034
+ +--4
+ ! +-----H022
+ +-32
+ ! +--H013
+ +-23
+ +--H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 1 no ..... .....
+ 1 17 no ..... .....
+ 17 22 yes ...1. .....
+ 22 H035 yes ..... ....0
+ 22 H007 no ..... .....
+ 17 25 yes 0.... .....
+ 25 H025 no ..... .....
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+ 2 19 yes ..... 0....
+ 19 30 no ..... .....
+ 30 H005 yes ..... ....0
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+ 28 H008 no ..... .....
+ 19 14 no ..... .....
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+ 7 24 no ..... .....
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+ 7 26 yes ..1.. .....
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+ 16 29 no ..... .....
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+ 16 6 yes ..... 1....
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+ 1 27 no ..... .....
+ 27 35 no ..... .....
+ 35 ANCE no ..... .....
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+ 27 10 yes .0... .....
+ 10 H006 no ..... .....
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+ 3 11 no ..... .....
+ 11 H001 no ..... .....
+ 11 9 no ..... .....
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+ 5 34 no ..... .....
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+ 21 31 no ..... .....
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+ 15 12 yes ..... ....0
+ 12 H010 no ..... .....
+ 12 18 no ..... .....
+ 18 H033 yes 0.... .....
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+ 5 20 yes 0.... .....
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+ 20 4 yes ..... ....0
+ 4 H034 no ..... .....
+ 4 32 yes ....1 .....
+ 32 H022 no ..... .....
+ 32 23 yes ..... 0....
+ 23 H013 no ..... .....
+ 23 H019 yes ..... ....1
+
+
+
+
+
+ +--------------------------------------H025
+ !
+ +----------------------------------------------------------------25 +-----------------------------------H004
+ ! ! !
+ ! ! ! +-----H005
+ ! +--2 +-------------------------30
+ ! ! ! ! +--H031
+ ! ! ! +-28
+ ! +-19 +--H008
+ ! !
+ ! ! +-----------------------H024
+ ! ! !
+ ! +-------14 +--H032
+ ! ! +----------------24
+ ! ! ! +--H016
+ ! +--7
+ ! ! +--------------H021
+--1 ! !
+ ! +----26 +-----------H002
+ ! ! !
+ ! +--8 +--H012
+ ! ! +----29
+ ! ! ! +--H009
+ ! +-16
+ ! ! +--H023
+ ! +-----6
+ ! +--H026
+ !
+ ! +--H035
+ ! +----------------------------------------------------------22
+ ! ! +--H007
+ ! !
+ +----------------------------------------17 +--ANCE
+ ! +----------------------------------------------------35
+ ! ! +--H030
+ ! !
+ +----27 +--------------------------------------------------H006
+ ! !
+ ! ! +-----------------------------------------------H028
+ +----10 !
+ ! ! +-----H001
+ ! ! +-------------------------------------11
+ ! ! ! ! +--H015
+ +-13 ! +--9
+ ! ! +--H020
+ ! !
+ ! ! +--------------------H018
+ ! ! !
+ +--3 ! +--H011
+ ! +-------------34 +-------------31
+ ! ! ! ! +--H003
+ ! ! ! !
+ ! ! +-21 +--H014
+ ! ! ! +-------33
+ ! ! ! ! +--H017
+ ! ! +----15
+ +--------5 ! +-----H010
+ ! +----12
+ ! ! +--H033
+ ! +-18
+ ! +--H027
+ !
+ ! +-----------H029
+ +----------------------20
+ ! +--------H034
+ +--4
+ ! +-----H022
+ +-32
+ ! +--H013
+ +-23
+ +--H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 1 no ..... .....
+ 1 25 yes 0.... .....
+ 25 H025 no ..... .....
+ 25 2 yes ....1 .....
+ 2 H004 no ..... .....
+ 2 19 yes ..... 0....
+ 19 30 no ..... .....
+ 30 H005 yes ..... ....0
+ 30 28 no ..... .....
+ 28 H031 yes ..... ..1..
+ 28 H008 no ..... .....
+ 19 14 no ..... .....
+ 14 H024 yes ..... ...1.
+ 14 7 yes ...1. .....
+ 7 24 no ..... .....
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+ 24 H016 no ..... .....
+ 7 26 yes ..1.. .....
+ 26 H021 yes ..... ..1..
+ 26 8 yes 1.... .....
+ 8 H002 no ..... .....
+ 8 16 yes ....0 .....
+ 16 29 no ..... .....
+ 29 H012 no ..... .....
+ 29 H009 yes ..... ..1..
+ 16 6 yes ..... 1....
+ 6 H023 no ..... .....
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+ 1 17 no ..... .....
+ 17 22 yes ...1. .....
+ 22 H035 yes ..... ....0
+ 22 H007 no ..... .....
+ 17 27 no ..... .....
+ 27 35 no ..... .....
+ 35 ANCE no ..... .....
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+ 27 10 yes .0... .....
+ 10 H006 no ..... .....
+ 10 13 yes ..... .1.1.
+ 13 H028 no ..... .....
+ 13 3 yes ..... ..1..
+ 3 11 no ..... .....
+ 11 H001 no ..... .....
+ 11 9 no ..... .....
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+ 3 5 yes .1... .....
+ 5 34 no ..... .....
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+ 34 21 yes ...1. .....
+ 21 31 no ..... .....
+ 31 H011 no ..... .....
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+ 21 15 no ..... .....
+ 15 33 yes ..1.. .....
+ 33 H014 yes 0.... .....
+ 33 H017 no ..... .....
+ 15 12 yes ..... ....0
+ 12 H010 no ..... .....
+ 12 18 no ..... .....
+ 18 H033 yes 0.... .....
+ 18 H027 yes ..1.. 0....
+ 5 20 yes 0.... .....
+ 20 H029 no ..... .....
+ 20 4 yes ..... ....0
+ 4 H034 no ..... .....
+ 4 32 yes ....1 .....
+ 32 H022 no ..... .....
+ 32 23 yes ..... 0....
+ 23 H013 no ..... .....
+ 23 H019 yes ..... ....1
+
+
+
+
+
+ +--H035
+ +----------------------------------------22
+ ! +--H007
+ +----------------------------------------------------------17
+ ! ! +--------------------------------------H025
+ ! ! !
+ ! +----25 +-----------------------------------H004
+ ! ! !
+ ! ! ! +-----H005
+ ! +--2 +-------------------------30
+ ! ! ! ! +--H031
+ ! ! ! +-28
+ ! +-19 +--H008
+ ! !
+ ! ! +-----------------------H024
+ ! ! !
+ ! +-------14 +--------------------H016
+ ! ! !
+ ! +--7 +-----------------H032
+--1 ! !
+ ! +-24 +--------------H021
+ ! ! !
+ ! +-26 +-----------H002
+ ! ! !
+ ! +--8 +--H012
+ ! ! +----29
+ ! ! ! +--H009
+ ! +-16
+ ! ! +--H023
+ ! +-----6
+ ! +--H026
+ !
+ ! +--ANCE
+ ! +----------------------------------------------------35
+ ! ! +--H030
+ +----------------------------------------------27
+ ! +--------------------------------------------------H006
+ ! !
+ +----10 +-----------------------------------------------H015
+ ! !
+ ! ! +--------------------------------------------H028
+ +--9 !
+ ! ! +--H001
+ ! ! +-------------------------------------11
+ +-13 ! +--H020
+ ! !
+ ! ! +--------------------H018
+ ! ! !
+ ! ! ! +--H011
+ +--3 +-------------34 +-------------31
+ ! ! ! ! +--H003
+ ! ! ! !
+ ! ! +-21 +--H014
+ ! ! ! +-------33
+ ! ! ! ! +--H017
+ ! ! +----15
+ +-----5 ! +--H033
+ ! ! +-18
+ ! +----12 +--H010
+ ! !
+ ! +-----H027
+ !
+ ! +-----------H029
+ +----------------------20
+ ! +--------H034
+ +--4
+ ! +-----H022
+ +-32
+ ! +--H013
+ +-23
+ +--H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 1 no ..... .....
+ 1 17 no ..... .....
+ 17 22 yes ...1. .....
+ 22 H035 yes ..... ....0
+ 22 H007 no ..... .....
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+ 7 H016 no ..... .....
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+
+
+
+
+
+ +--H035
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+ ! ! !
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+ !
+ ! +--ANCE
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+ ! !
+ +----10 +-----------------------------------------------H028
+ ! !
+ ! ! +--H001
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+ ! ! +--H015
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+ +--9 !
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+ ! +--H027
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+ ! +-----------H029
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+ ! +-----H022
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+ ! +--H013
+ +-23
+ +--H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 1 no ..... .....
+ 1 17 no ..... .....
+ 17 22 yes ...1. .....
+ 22 H035 yes ..... ....0
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+
+
+
+
+
+ +--H035
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+ ! +--H007
+ +----------------------------------------------------------17
+ ! ! +--------------------------------------H025
+ ! ! !
+ ! +----25 +-----------------------------------H004
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+ ! +--7 +-----------------H032
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+ ! +--8 +--H012
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+ ! ! ! +--H009
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+ ! +-----6
+ ! +--H026
+ !
+ ! +--ANCE
+ ! +----------------------------------------------------35
+ ! ! +--H030
+ +----------------------------------------------27
+ ! +--------------------------------------------------H006
+ ! !
+ +----10 +-----------------------------------------------H015
+ ! !
+ ! ! +--------------------------------------------H001
+ +--9 !
+ ! ! +--H028
+ ! ! +-------------------------------------13
+ +-11 ! +--H020
+ ! !
+ ! ! +--------------------H018
+ ! ! !
+ ! ! ! +--H011
+ +--3 +-------------34 +-------------31
+ ! ! ! ! +--H003
+ ! ! ! !
+ ! ! +-21 +--H014
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+ ! ! ! ! +--H017
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+ ! +----12
+ ! ! +--H033
+ ! +-18
+ ! +--H027
+ !
+ ! +-----------H029
+ +----------------------20
+ ! +--------H034
+ +--4
+ ! +-----H022
+ +-32
+ ! +--H013
+ +-23
+ +--H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 1 no ..... .....
+ 1 17 no ..... .....
+ 17 22 yes ...1. .....
+ 22 H035 yes ..... ....0
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+ 19 14 no ..... .....
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+
+
+
+
+
+ +--H035
+ +----------------------------------------22
+ ! +--H007
+ +----------------------------------------------------------17
+ ! ! +--------------------------------------H025
+ ! ! !
+ ! +----25 +-----------------------------------H004
+ ! ! !
+ ! ! ! +-----H005
+ ! +--2 +-------------------------30
+ ! ! ! ! +--H031
+ ! ! ! +-28
+ ! +-19 +--H008
+ ! !
+ ! ! +-----------------------H024
+ ! ! !
+ ! +-------14 +--------------------H016
+ ! ! !
+ ! +--7 +-----------------H032
+--1 ! !
+ ! +-24 +--------------H021
+ ! ! !
+ ! +-26 +-----------H002
+ ! ! !
+ ! +--8 +--H012
+ ! ! +----29
+ ! ! ! +--H009
+ ! +-16
+ ! ! +--H023
+ ! +-----6
+ ! +--H026
+ !
+ ! +--ANCE
+ ! +----------------------------------------------------35
+ ! ! +--H030
+ +----------------------------------------------27
+ ! +--------------------------------------------------H006
+ ! !
+ +----10 +-----------------------------------------------H015
+ ! !
+ ! ! +--H028
+ +--9 +----------------------------------------13
+ ! ! +--H001
+ ! !
+ ! ! +--------------------------------------H020
+ +-11 !
+ ! ! +--------------------H018
+ ! ! !
+ ! ! ! +--H011
+ ! ! +-------------34 +-------------31
+ +-----3 ! ! ! +--H003
+ ! ! ! !
+ ! ! +-21 +--H014
+ ! ! ! +-------33
+ ! ! ! ! +--H017
+ ! ! +----15
+ +--5 ! +-----H010
+ ! +----12
+ ! ! +--H033
+ ! +-18
+ ! +--H027
+ !
+ ! +-----------H029
+ +----------------------20
+ ! +--------H034
+ +--4
+ ! +-----H022
+ +-32
+ ! +--H013
+ +-23
+ +--H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 1 no ..... .....
+ 1 17 no ..... .....
+ 17 22 yes ...1. .....
+ 22 H035 yes ..... ....0
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+ 32 23 yes ..... 0....
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+ 23 H019 yes ..... ....1
+
+
+
+
+
+ +--H035
+ +----------------------------------------22
+ ! +--H007
+ +----------------------------------------------------------17
+ ! ! +--------------------------------------H025
+ ! ! !
+ ! +----25 +-----------------------------------H004
+ ! ! !
+ ! ! ! +-----H005
+ ! +--2 +-------------------------30
+ ! ! ! ! +--H031
+ ! ! ! +-28
+ ! +-19 +--H008
+ ! !
+ ! ! +-----------------------H024
+ ! ! !
+ ! +-------14 +--------------------H016
+ ! ! !
+ ! +--7 +-----------------H032
+--1 ! !
+ ! +-24 +--------------H021
+ ! ! !
+ ! +-26 +-----------H002
+ ! ! !
+ ! +--8 +--H012
+ ! ! +----29
+ ! ! ! +--H009
+ ! +-16
+ ! ! +--H023
+ ! +-----6
+ ! +--H026
+ !
+ ! +--ANCE
+ ! +----------------------------------------------------35
+ ! ! +--H030
+ +----------------------------------------------27
+ ! +--------------------------------------------------H006
+ ! !
+ +----10 +-----------------------------------------------H015
+ ! !
+ ! ! +--H028
+ +--9 +----------------------------------------13
+ ! ! +--H001
+ ! !
+ ! ! +--------------------------------------H020
+ +-11 !
+ ! ! +--------------------H018
+ ! ! !
+ ! ! ! +--H011
+ ! ! +-------------34 +-------------31
+ +-----3 ! ! ! +--H003
+ ! ! ! !
+ ! ! +-21 +--H014
+ ! ! ! +-------33
+ ! ! ! ! +--H017
+ ! ! +----15
+ +--5 ! +--H033
+ ! ! +-18
+ ! +----12 +--H010
+ ! !
+ ! +-----H027
+ !
+ ! +-----------H029
+ +----------------------20
+ ! +--------H034
+ +--4
+ ! +-----H022
+ +-32
+ ! +--H013
+ +-23
+ +--H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 1 no ..... .....
+ 1 17 no ..... .....
+ 17 22 yes ...1. .....
+ 22 H035 yes ..... ....0
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+ 27 35 no ..... .....
+ 35 ANCE no ..... .....
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+ 5 34 no ..... .....
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+ 15 12 yes ..... ....0
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+ 18 H010 no ..... .....
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+ 5 20 yes 0.... .....
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+ 4 32 yes ....1 .....
+ 32 H022 no ..... .....
+ 32 23 yes ..... 0....
+ 23 H013 no ..... .....
+ 23 H019 yes ..... ....1
+
+
+
+
+
+ +--H035
+ +----------------------------------------22
+ ! +--H007
+ +----------------------------------------------------------17
+ ! ! +--------------------------------------H025
+ ! ! !
+ ! +----25 +-----------------------------------H004
+ ! ! !
+ ! ! ! +-----H005
+ ! +--2 +-------------------------30
+ ! ! ! ! +--H031
+ ! ! ! +-28
+ ! +-19 +--H008
+ ! !
+ ! ! +-----------------------H024
+ ! ! !
+ ! +-------14 +--------------------H016
+ ! ! !
+ ! +--7 +-----------------H032
+--1 ! !
+ ! +-24 +--------------H021
+ ! ! !
+ ! +-26 +-----------H002
+ ! ! !
+ ! +--8 +--H012
+ ! ! +----29
+ ! ! ! +--H009
+ ! +-16
+ ! ! +--H023
+ ! +-----6
+ ! +--H026
+ !
+ ! +--ANCE
+ ! +----------------------------------------------------35
+ ! ! +--H030
+ +----------------------------------------------27
+ ! +--------------------------------------------------H006
+ ! !
+ +----10 +-----------------------------------------------H015
+ ! !
+ +--9 +--------------------------------------------H001
+ ! !
+ ! ! +-----------------------------------------H028
+ +-11 !
+ ! ! +--------------------------------------H020
+ ! ! !
+ +-13 ! +--------------------H018
+ ! ! !
+ ! ! ! +--H011
+ ! ! +-------------34 +-------------31
+ +--3 ! ! ! +--H003
+ ! ! ! !
+ ! ! +-21 +--H014
+ ! ! ! +-------33
+ ! ! ! ! +--H017
+ ! ! +----15
+ +--5 ! +-----H010
+ ! +----12
+ ! ! +--H033
+ ! +-18
+ ! +--H027
+ !
+ ! +-----------H029
+ +----------------------20
+ ! +--------H034
+ +--4
+ ! +-----H022
+ +-32
+ ! +--H013
+ +-23
+ +--H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 1 no ..... .....
+ 1 17 no ..... .....
+ 17 22 yes ...1. .....
+ 22 H035 yes ..... ....0
+ 22 H007 no ..... .....
+ 17 25 yes 0.... .....
+ 25 H025 no ..... .....
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+ 19 30 no ..... .....
+ 30 H005 yes ..... ....0
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+ 26 8 yes 1.... .....
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+ 16 29 no ..... .....
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+ 16 6 yes ..... 1....
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+ 1 27 no ..... .....
+ 27 35 no ..... .....
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+ 33 H014 yes 0.... .....
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+ 15 12 yes ..... ....0
+ 12 H010 no ..... .....
+ 12 18 no ..... .....
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+ 5 20 yes 0.... .....
+ 20 H029 no ..... .....
+ 20 4 yes ..... ....0
+ 4 H034 no ..... .....
+ 4 32 yes ....1 .....
+ 32 H022 no ..... .....
+ 32 23 yes ..... 0....
+ 23 H013 no ..... .....
+ 23 H019 yes ..... ....1
+
+
+
+
+
+ +--H035
+ +----------------------------------------22
+ ! +--H007
+ +----------------------------------------------------------17
+ ! ! +--------------------------------------H025
+ ! ! !
+ ! +----25 +-----------------------------------H004
+ ! ! !
+ ! ! ! +-----H005
+ ! +--2 +-------------------------30
+ ! ! ! ! +--H031
+ ! ! ! +-28
+ ! +-19 +--H008
+ ! !
+ ! ! +-----------------------H024
+ ! ! !
+ ! +-------14 +--------------------H016
+ ! ! !
+ ! +--7 +-----------------H032
+--1 ! !
+ ! +-24 +--------------H021
+ ! ! !
+ ! +-26 +-----------H002
+ ! ! !
+ ! +--8 +--H012
+ ! ! +----29
+ ! ! ! +--H009
+ ! +-16
+ ! ! +--H023
+ ! +-----6
+ ! +--H026
+ !
+ ! +--ANCE
+ ! +----------------------------------------------------35
+ ! ! +--H030
+ +----------------------------------------------27
+ ! +--------------------------------------------------H006
+ ! !
+ +----10 +-----------------------------------------------H015
+ ! !
+ +--9 +--------------------------------------------H001
+ ! !
+ ! ! +-----------------------------------------H028
+ +-11 !
+ ! ! +--------------------------------------H020
+ ! ! !
+ +-13 ! +--------------------H018
+ ! ! !
+ ! ! ! +--H011
+ ! ! +-------------34 +-------------31
+ +--3 ! ! ! +--H003
+ ! ! ! !
+ ! ! +-21 +--H014
+ ! ! ! +-------33
+ ! ! ! ! +--H017
+ ! ! +----15
+ +--5 ! +--H033
+ ! ! +-18
+ ! +----12 +--H010
+ ! !
+ ! +-----H027
+ !
+ ! +-----------H029
+ +----------------------20
+ ! +--------H034
+ +--4
+ ! +-----H022
+ +-32
+ ! +--H013
+ +-23
+ +--H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 1 no ..... .....
+ 1 17 no ..... .....
+ 17 22 yes ...1. .....
+ 22 H035 yes ..... ....0
+ 22 H007 no ..... .....
+ 17 25 yes 0.... .....
+ 25 H025 no ..... .....
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+ 30 H005 yes ..... ....0
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+ 19 14 no ..... .....
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+ 14 7 yes ...1. .....
+ 7 H016 no ..... .....
+ 7 24 no ..... .....
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+ 24 26 yes ..1.. .....
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+ 8 H002 no ..... .....
+ 8 16 yes ....0 .....
+ 16 29 no ..... .....
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+ 10 9 yes ..... .11..
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+ 20 4 yes ..... ....0
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+ 4 32 yes ....1 .....
+ 32 H022 no ..... .....
+ 32 23 yes ..... 0....
+ 23 H013 no ..... .....
+ 23 H019 yes ..... ....1
+
+
+
+
+
+ +--H035
+ +----------------------------------------22
+ ! +--H007
+ +----------------------------------------------------------17
+ ! ! +--------------------------------------H025
+ ! ! !
+ ! +----25 +-----------------------------------H004
+ ! ! !
+ ! ! ! +-----H005
+ ! +--2 +-------------------------30
+ ! ! ! ! +--H031
+ ! ! ! +-28
+ ! +-19 +--H008
+ ! !
+ ! ! +-----------------------H024
+ ! ! !
+ ! +-------14 +--------------------H016
+ ! ! !
+ ! +--7 +-----------------H032
+--1 ! !
+ ! +-24 +--------------H021
+ ! ! !
+ ! +-26 +-----------H002
+ ! ! !
+ ! +--8 +--H012
+ ! ! +----29
+ ! ! ! +--H009
+ ! +-16
+ ! ! +--H023
+ ! +-----6
+ ! +--H026
+ !
+ ! +--ANCE
+ ! +----------------------------------------------------35
+ ! ! +--H030
+ +----------------------------------------------27
+ ! +--------------------------------------------------H006
+ ! !
+ +----10 +-----------------------------------------------H015
+ ! !
+ +--9 +--------------------------------------------H001
+ ! !
+ ! ! +-----------------------------------------H028
+ +-11 !
+ ! ! +--------------------------------------H020
+ ! ! !
+ +-13 ! +--------------------H018
+ ! ! !
+ ! ! ! +--H011
+ ! ! +-------------34 +-------------31
+ +--3 ! ! ! +--H003
+ ! ! ! !
+ ! ! +-21 +--H014
+ ! ! ! +-------33
+ ! ! ! ! +--H017
+ ! ! +----15
+ +--5 ! +-----H033
+ ! +----18
+ ! ! +--H010
+ ! +-12
+ ! +--H027
+ !
+ ! +-----------H029
+ +----------------------20
+ ! +--------H034
+ +--4
+ ! +-----H022
+ +-32
+ ! +--H013
+ +-23
+ +--H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 1 no ..... .....
+ 1 17 no ..... .....
+ 17 22 yes ...1. .....
+ 22 H035 yes ..... ....0
+ 22 H007 no ..... .....
+ 17 25 yes 0.... .....
+ 25 H025 no ..... .....
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+ 19 30 no ..... .....
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+ 28 H031 yes ..... ..1..
+ 28 H008 no ..... .....
+ 19 14 no ..... .....
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+ 14 7 yes ...1. .....
+ 7 H016 no ..... .....
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+ 24 26 yes ..1.. .....
+ 26 H021 yes ..... ..1..
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+ 8 H002 no ..... .....
+ 8 16 yes ....0 .....
+ 16 29 no ..... .....
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+ 27 35 no ..... .....
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+ 5 34 no ..... .....
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+ 5 20 yes 0.... .....
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+ 4 32 yes ....1 .....
+ 32 H022 no ..... .....
+ 32 23 yes ..... 0....
+ 23 H013 no ..... .....
+ 23 H019 yes ..... ....1
+
+
+
+
+
+ +--H035
+ +----------------------------------------22
+ ! +--H007
+ +----------------------------------------------------------17
+ ! ! +--------------------------------------H025
+ ! ! !
+ ! +----25 +-----------------------------------H004
+ ! ! !
+ ! ! ! +-----H005
+ ! +--2 +-------------------------30
+ ! ! ! ! +--H031
+ ! ! ! +-28
+ ! +-19 +--H008
+ ! !
+ ! ! +-----------------------H024
+ ! ! !
+ ! +-------14 +--------------------H016
+ ! ! !
+ ! +--7 +-----------------H032
+--1 ! !
+ ! +-24 +--------------H021
+ ! ! !
+ ! +-26 +-----------H002
+ ! ! !
+ ! +--8 +--H012
+ ! ! +----29
+ ! ! ! +--H009
+ ! +-16
+ ! ! +--H023
+ ! +-----6
+ ! +--H026
+ !
+ ! +--ANCE
+ ! +----------------------------------------------------35
+ ! ! +--H030
+ +----------------------------------------------27
+ ! +--------------------------------------------------H006
+ ! !
+ +----10 +-----------------------------------------------H015
+ ! !
+ +--9 +--------------------------------------------H001
+ ! !
+ ! ! +-----------------------------------------H020
+ +-11 !
+ ! ! +--------------------------------------H028
+ ! ! !
+ +--3 ! +--------------------H018
+ ! ! !
+ ! ! ! +--H011
+ ! ! +-------------34 +-------------31
+ +-13 ! ! ! +--H003
+ ! ! ! !
+ ! ! +-21 +--H014
+ ! ! ! +-------33
+ ! ! ! ! +--H017
+ ! ! +----15
+ +--5 ! +-----H010
+ ! +----12
+ ! ! +--H033
+ ! +-18
+ ! +--H027
+ !
+ ! +-----------H029
+ +----------------------20
+ ! +--------H034
+ +--4
+ ! +-----H022
+ +-32
+ ! +--H013
+ +-23
+ +--H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 1 no ..... .....
+ 1 17 no ..... .....
+ 17 22 yes ...1. .....
+ 22 H035 yes ..... ....0
+ 22 H007 no ..... .....
+ 17 25 yes 0.... .....
+ 25 H025 no ..... .....
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+ 2 19 yes ..... 0....
+ 19 30 no ..... .....
+ 30 H005 yes ..... ....0
+ 30 28 no ..... .....
+ 28 H031 yes ..... ..1..
+ 28 H008 no ..... .....
+ 19 14 no ..... .....
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+ 16 29 no ..... .....
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+ 1 27 no ..... .....
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+ 4 32 yes ....1 .....
+ 32 H022 no ..... .....
+ 32 23 yes ..... 0....
+ 23 H013 no ..... .....
+ 23 H019 yes ..... ....1
+
+
+
+
+
+ +--H035
+ +----------------------------------------22
+ ! +--H007
+ +----------------------------------------------------------17
+ ! ! +--------------------------------------H025
+ ! ! !
+ ! +----25 +-----------------------------------H004
+ ! ! !
+ ! +--2 +--------------------------------H024
+ ! ! !
+ ! ! ! +-----H005
+ ! +-14 +----------------------30
+ ! ! ! ! +--H031
+ ! ! ! +-28
+ ! +-19 +--H008
+ ! !
+ ! ! +--------------------H016
+ ! +--------7
+ ! ! +-----------------H032
+--1 +-24
+ ! ! +--------------H021
+ ! +-26
+ ! ! +-----------H002
+ ! +--8
+ ! ! +--------H009
+ ! +-16
+ ! ! +-----H012
+ ! +-29
+ ! ! +--H023
+ ! +--6
+ ! +--H026
+ !
+ ! +--ANCE
+ ! +----------------------------------------------------35
+ ! ! +--H030
+ +----------------------------------------------27
+ ! +--------------------------------------------------H006
+ ! !
+ +----10 +-----------------------------------------------H028
+ ! !
+ +-13 +--------------------------------------------H015
+ ! !
+ +--9 +-----------------------------------------H001
+ ! !
+ ! ! +--------------------------------------H020
+ +-11 !
+ ! ! +-----------------H018
+ ! ! !
+ ! ! ! +--H011
+ +--3 +----------------34 +----------31
+ ! ! ! ! +--H003
+ ! ! ! !
+ ! ! +-21 +--H014
+ ! ! ! +----33
+ ! ! ! ! +--H017
+ +--5 +----15
+ ! ! +--H010
+ ! +----12
+ ! +--H027
+ !
+ ! +--------------H029
+ +-------------------20
+ ! +-----------H034
+ +--4
+ ! +--------H033
+ +-18
+ ! +-----H022
+ +-32
+ ! +--H013
+ +-23
+ +--H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 1 no ..... .....
+ 1 17 no ..... .....
+ 17 22 yes ...1. .....
+ 22 H035 yes ..... ....0
+ 22 H007 no ..... .....
+ 17 25 yes 0.... .....
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+ 2 14 yes ..... 0....
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+ 14 19 no ..... .....
+ 19 30 no ..... .....
+ 30 H005 yes ..... ....0
+ 30 28 no ..... .....
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+ 7 H016 no ..... .....
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+ 26 8 yes 1.... .....
+ 8 H002 no ..... .....
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+ 4 18 no ..... .....
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+ 18 32 yes ....1 .....
+ 32 H022 no ..... .....
+ 32 23 yes ..... 0....
+ 23 H013 no ..... .....
+ 23 H019 yes ..... ....1
+
+
+
+
+
+ +--H035
+ +----------------------------------------22
+ ! +--H007
+ +----------------------------------------------------------17
+ ! ! +--------------------------------------H025
+ ! ! !
+ ! +----25 +-----------------------------------H004
+ ! ! !
+ ! +--2 +--------------------------------H024
+ ! ! !
+ ! ! ! +-----H005
+ ! +-14 +----------------------30
+ ! ! ! ! +--H031
+ ! ! ! +-28
+ ! +-19 +--H008
+ ! !
+ ! ! +--------------------H016
+ ! +--------7
+ ! ! +-----------------H032
+--1 +-24
+ ! ! +--------------H021
+ ! +-26
+ ! ! +-----------H002
+ ! +--8
+ ! ! +--------H009
+ ! +-16
+ ! ! +-----H012
+ ! +-29
+ ! ! +--H023
+ ! +--6
+ ! +--H026
+ !
+ ! +--ANCE
+ ! +----------------------------------------------------35
+ ! ! +--H030
+ +----------------------------------------------27
+ ! +--------------------------------------------------H006
+ ! !
+ +----10 +-----------------------------------------------H028
+ ! !
+ +-13 +--------------------------------------------H015
+ ! !
+ +--9 +-----------------------------------------H001
+ ! !
+ ! ! +--------------------------------------H020
+ +-11 !
+ ! ! +-----------------H018
+ ! ! !
+ ! ! ! +--H011
+ +--3 +----------------34 +----------31
+ ! ! ! ! +--H003
+ ! ! ! !
+ ! ! +-21 +--H014
+ ! ! ! +----33
+ ! ! ! ! +--H017
+ +--5 +----15
+ ! ! +--H010
+ ! +----12
+ ! +--H027
+ !
+ ! +--------------H029
+ ! !
+ +-------------------20 +--H033
+ ! +-------18
+ ! ! +--H034
+ +--4
+ ! +-----H022
+ +----32
+ ! +--H013
+ +-23
+ +--H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 1 no ..... .....
+ 1 17 no ..... .....
+ 17 22 yes ...1. .....
+ 22 H035 yes ..... ....0
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+ 14 19 no ..... .....
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+ 16 29 no ..... .....
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+ 27 35 no ..... .....
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+ 11 3 no ..... .....
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+ 5 34 no ..... .....
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+ 5 20 yes 0.... .....
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+ 4 32 yes ....1 .....
+ 32 H022 no ..... .....
+ 32 23 yes ..... 0....
+ 23 H013 no ..... .....
+ 23 H019 yes ..... ....1
+
+
+
+
+
+ +--H035
+ +----------------------------------------22
+ ! +--H007
+ +----------------------------------------------------------17
+ ! ! +--------------------------------------H025
+ ! ! !
+ ! +----25 +-----------------------------------H004
+ ! ! !
+ ! ! ! +--------H005
+ ! +--2 +----------------------30
+ ! ! ! ! +-----H008
+ ! ! ! +-19
+ ! ! ! ! +--H031
+ ! +-14 +-28
+ ! ! +--H024
+ ! !
+ ! ! +--------------------H016
+ ! ! !
+ ! +-----------7 +-----------------H032
+--1 ! !
+ ! +-24 +--------------H021
+ ! ! !
+ ! +-26 +-----------H002
+ ! ! !
+ ! +--8 +--H012
+ ! ! +----29
+ ! ! ! +--H009
+ ! +-16
+ ! ! +--H023
+ ! +-----6
+ ! +--H026
+ !
+ ! +--ANCE
+ ! +----------------------------------------------------35
+ ! ! +--H030
+ +----------------------------------------------27
+ ! +--------------------------------------------------H006
+ ! !
+ +----10 +-----------------------------------------------H028
+ ! !
+ +-13 +--------------------------------------------H015
+ ! !
+ ! ! +-----------------------------------------H001
+ +--9 !
+ ! ! +--------------------------------------H020
+ ! ! !
+ +-11 ! +--------------------H018
+ ! ! !
+ ! ! ! +--H011
+ ! ! +-------------34 +-------------31
+ +--3 ! ! ! +--H003
+ ! ! ! !
+ ! ! +-21 +--H014
+ ! ! ! +-------33
+ ! ! ! ! +--H017
+ ! ! +----15
+ +--5 ! +-----H010
+ ! +----12
+ ! ! +--H033
+ ! +-18
+ ! +--H027
+ !
+ ! +-----------H029
+ +----------------------20
+ ! +--------H034
+ +--4
+ ! +-----H022
+ +-32
+ ! +--H013
+ +-23
+ +--H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 1 no ..... .....
+ 1 17 no ..... .....
+ 17 22 yes ...1. .....
+ 22 H035 yes ..... ....0
+ 22 H007 no ..... .....
+ 17 25 yes 0.... .....
+ 25 H025 no ..... .....
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+ 2 14 yes ..... 0....
+ 14 30 no ..... .....
+ 30 H005 yes ..... ....0
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+ 16 29 no ..... .....
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+ 1 27 no ..... .....
+ 27 35 no ..... .....
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+ 11 H001 no ..... .....
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+ 5 34 no ..... .....
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+ 21 31 no ..... .....
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+ 15 33 yes ..1.. .....
+ 33 H014 yes 0.... .....
+ 33 H017 no ..... .....
+ 15 12 yes ..... ....0
+ 12 H010 no ..... .....
+ 12 18 no ..... .....
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+ 5 20 yes 0.... .....
+ 20 H029 no ..... .....
+ 20 4 yes ..... ....0
+ 4 H034 no ..... .....
+ 4 32 yes ....1 .....
+ 32 H022 no ..... .....
+ 32 23 yes ..... 0....
+ 23 H013 no ..... .....
+ 23 H019 yes ..... ....1
+
+
+
+
+
+ +--H035
+ +----------------------------------------22
+ ! +--H007
+ !
+ +----------------------------------------------------------17 +--------------------------------------H025
+ ! ! !
+ ! ! ! +-----------------------------------H004
+ ! +----25 !
+ ! ! ! +--H031
+ ! ! ! +----28
+ ! +--2 ! +--H008
+ ! ! +----------------------19
+ ! ! ! ! +--H005
+ ! ! ! +----30
+ ! +-14 +--H024
+ ! !
+ ! ! +--------------------H016
+ ! ! !
+ ! +-----------7 +-----------------H032
+--1 ! !
+ ! +-24 +--------------H021
+ ! ! !
+ ! +-26 +-----------H002
+ ! ! !
+ ! +--8 +--H012
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+ ! ! ! +--H009
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+ ! ! +--H023
+ ! +-----6
+ ! +--H026
+ !
+ ! +--ANCE
+ ! +----------------------------------------------------35
+ ! ! +--H030
+ +----------------------------------------------27
+ ! +--------------------------------------------------H006
+ ! !
+ +----10 +-----------------------------------------------H028
+ ! !
+ +-13 +--------------------------------------------H015
+ ! !
+ ! ! +-----------------------------------------H001
+ +--9 !
+ ! ! +--------------------------------------H020
+ ! ! !
+ +-11 ! +--------------------H018
+ ! ! !
+ ! ! ! +--H011
+ ! ! +-------------34 +-------------31
+ +--3 ! ! ! +--H003
+ ! ! ! !
+ ! ! +-21 +--H014
+ ! ! ! +-------33
+ ! ! ! ! +--H017
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+ +--5 ! +-----H010
+ ! +----12
+ ! ! +--H033
+ ! +-18
+ ! +--H027
+ !
+ ! +-----------H029
+ +----------------------20
+ ! +--------H034
+ +--4
+ ! +-----H022
+ +-32
+ ! +--H013
+ +-23
+ +--H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 1 no ..... .....
+ 1 17 no ..... .....
+ 17 22 yes ...1. .....
+ 22 H035 yes ..... ....0
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+
+
+
+
+
+ +--H035
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+ ! +--H007
+ !
+ +----------------------------------------------------------17 +--------------------------------------H025
+ ! ! !
+ ! ! ! +-----------------------------------H004
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+ ! +-14 +-----H024
+ ! !
+ ! ! +--------------------H016
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+ ! +--8 +--H012
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+ ! ! ! +--H009
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+ ! ! +--H023
+ ! +-----6
+ ! +--H026
+ !
+ ! +--ANCE
+ ! +----------------------------------------------------35
+ ! ! +--H030
+ +----------------------------------------------27
+ ! +--------------------------------------------------H006
+ ! !
+ +----10 +-----------------------------------------------H028
+ ! !
+ +-13 +--------------------------------------------H015
+ ! !
+ ! ! +-----------------------------------------H001
+ +--9 !
+ ! ! +--------------------------------------H020
+ ! ! !
+ +-11 ! +--------------------H018
+ ! ! !
+ ! ! ! +--H011
+ ! ! +-------------34 +-------------31
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+ ! ! ! !
+ ! ! +-21 +--H014
+ ! ! ! +-------33
+ ! ! ! ! +--H017
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+ +--5 ! +-----H010
+ ! +----12
+ ! ! +--H033
+ ! +-18
+ ! +--H027
+ !
+ ! +-----------H029
+ +----------------------20
+ ! +--------H034
+ +--4
+ ! +-----H022
+ +-32
+ ! +--H013
+ +-23
+ +--H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 1 no ..... .....
+ 1 17 no ..... .....
+ 17 22 yes ...1. .....
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+
+
+
+
+
+ +--H035
+ +----------------------------------------22
+ ! +--H007
+ !
+ +----------------------------------------------------------17 +--------------------------------------H025
+ ! ! !
+ ! ! ! +-----------------------------------H004
+ ! +----25 !
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+ ! ! ! ! +--H008
+ ! ! ! !
+ ! +-14 +--------H024
+ ! !
+ ! ! +--------------------H016
+ ! ! !
+ ! +-----------7 +-----------------H032
+--1 ! !
+ ! +-24 +--------------H021
+ ! ! !
+ ! +-26 +-----------H002
+ ! ! !
+ ! +--8 +--H012
+ ! ! +----29
+ ! ! ! +--H009
+ ! +-16
+ ! ! +--H023
+ ! +-----6
+ ! +--H026
+ !
+ ! +--ANCE
+ ! +----------------------------------------------------35
+ ! ! +--H030
+ +----------------------------------------------27
+ ! +--------------------------------------------------H006
+ ! !
+ +----10 +-----------------------------------------------H028
+ ! !
+ +-13 +--------------------------------------------H015
+ ! !
+ ! ! +-----------------------------------------H001
+ +--9 !
+ ! ! +--------------------------------------H020
+ ! ! !
+ +-11 ! +--------------------H018
+ ! ! !
+ ! ! ! +--H011
+ ! ! +-------------34 +-------------31
+ +--3 ! ! ! +--H003
+ ! ! ! !
+ ! ! +-21 +--H014
+ ! ! ! +-------33
+ ! ! ! ! +--H017
+ ! ! +----15
+ +--5 ! +-----H010
+ ! +----12
+ ! ! +--H033
+ ! +-18
+ ! +--H027
+ !
+ ! +-----------H029
+ +----------------------20
+ ! +--------H034
+ +--4
+ ! +-----H022
+ +-32
+ ! +--H013
+ +-23
+ +--H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 1 no ..... .....
+ 1 17 no ..... .....
+ 17 22 yes ...1. .....
+ 22 H035 yes ..... ....0
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+
+
+
+
+
+ +--H035
+ +----------------------------------------22
+ ! +--H007
+ +----------------------------------------------------------17
+ ! ! +--------------------------------------H025
+ ! ! !
+ ! +----25 +-----------------------------------H004
+ ! ! !
+ ! ! ! +--------H005
+ ! +--2 +----------------------30
+ ! ! ! ! +-----H031
+ ! ! ! +-28
+ ! ! ! ! +--H008
+ ! +-14 +-19
+ ! ! +--H024
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+ ! ! +--------------------H016
+ ! ! !
+ ! +-----------7 +-----------------H032
+--1 ! !
+ ! +-24 +--------------H021
+ ! ! !
+ ! +-26 +-----------H002
+ ! ! !
+ ! +--8 +--H012
+ ! ! +----29
+ ! ! ! +--H009
+ ! +-16
+ ! ! +--H023
+ ! +-----6
+ ! +--H026
+ !
+ ! +--ANCE
+ ! +----------------------------------------------------35
+ ! ! +--H030
+ +----------------------------------------------27
+ ! +--------------------------------------------------H006
+ ! !
+ +----10 +-----------------------------------------------H028
+ ! !
+ +-13 +--------------------------------------------H015
+ ! !
+ ! ! +-----------------------------------------H001
+ +--9 !
+ ! ! +--------------------------------------H020
+ ! ! !
+ +-11 ! +--------------------H018
+ ! ! !
+ ! ! ! +--H011
+ ! ! +-------------34 +-------------31
+ +--3 ! ! ! +--H003
+ ! ! ! !
+ ! ! +-21 +--H014
+ ! ! ! +-------33
+ ! ! ! ! +--H017
+ ! ! +----15
+ +--5 ! +-----H010
+ ! +----12
+ ! ! +--H033
+ ! +-18
+ ! +--H027
+ !
+ ! +-----------H029
+ +----------------------20
+ ! +--------H034
+ +--4
+ ! +-----H022
+ +-32
+ ! +--H013
+ +-23
+ +--H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 1 no ..... .....
+ 1 17 no ..... .....
+ 17 22 yes ...1. .....
+ 22 H035 yes ..... ....0
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+
+
+
+
+
+ +--H035
+ +----------------------------------------22
+ ! +--H007
+ +----------------------------------------------------------17
+ ! ! +--------------------------------------H025
+ ! ! !
+ ! +----25 +-----------------------------------H004
+ ! ! !
+ ! +--2 +--------------------------------H024
+ ! ! !
+ ! ! ! +-----H005
+ ! +-14 +----------------------30
+ ! ! ! ! +--H031
+ ! ! ! +-28
+ ! +-19 +--H008
+ ! !
+ ! ! +--------------------H016
+ ! ! !
+ ! +--------7 +-----------------H032
+--1 ! !
+ ! +-24 +--------------H021
+ ! ! !
+ ! +-26 +-----------H002
+ ! ! !
+ ! +--8 +--H012
+ ! ! +----29
+ ! ! ! +--H009
+ ! +-16
+ ! ! +--H023
+ ! +-----6
+ ! +--H026
+ !
+ ! +--ANCE
+ ! +----------------------------------------------------35
+ ! ! +--H030
+ +----------------------------------------------27
+ ! +--------------------------------------------------H006
+ ! !
+ +----10 +-----------------------------------------------H028
+ ! !
+ +-13 +--------------------------------------------H015
+ ! !
+ ! ! +-----------------------------------------H001
+ +--9 !
+ ! ! +--------------------------------------H020
+ ! ! !
+ +-11 ! +--------------------H018
+ ! ! !
+ ! ! ! +--H011
+ ! ! +-------------34 +-------------31
+ +--3 ! ! ! +--H003
+ ! ! ! !
+ ! ! +-21 +--H014
+ ! ! ! +-------33
+ ! ! ! ! +--H017
+ ! ! +----15
+ +--5 ! +-----H010
+ ! +----12
+ ! ! +--H033
+ ! +-18
+ ! +--H027
+ !
+ ! +-----------H029
+ +----------------------20
+ ! +--------H034
+ +--4
+ ! +-----H022
+ +-32
+ ! +--H013
+ +-23
+ +--H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 1 no ..... .....
+ 1 17 no ..... .....
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+ 32 H022 no ..... .....
+ 32 23 yes ..... 0....
+ 23 H013 no ..... .....
+ 23 H019 yes ..... ....1
+
+
+
+
+
+ +--H035
+ +----------------------------------------22
+ ! +--H007
+ +----------------------------------------------------------17
+ ! ! +--------------------------------------H025
+ ! ! !
+ ! +----25 +-----------------------------------H004
+ ! ! !
+ ! +--2 +--------------------------------H024
+ ! ! !
+ ! ! ! +-----H005
+ ! +-14 +----------------------30
+ ! ! ! ! +--H031
+ ! ! ! +-28
+ ! +-19 +--H008
+ ! !
+ ! ! +--------------------H016
+ ! +--------7
+ ! ! +-----------------H032
+--1 +-24
+ ! ! +--------------H021
+ ! +-26
+ ! ! +-----------H002
+ ! +--8
+ ! ! +--------H009
+ ! +-16
+ ! ! +-----H012
+ ! +-29
+ ! ! +--H023
+ ! +--6
+ ! +--H026
+ !
+ ! +--ANCE
+ ! +----------------------------------------------------35
+ ! ! +--H030
+ +----------------------------------------------27
+ ! +--------------------------------------------------H006
+ ! !
+ +----10 +-----------------------------------------------H028
+ ! !
+ +-13 +--------------------------------------------H015
+ ! !
+ ! ! +-----------------------------------------H001
+ +--9 !
+ ! ! +--------------------------------------H020
+ ! ! !
+ +-11 ! +--------------------H018
+ ! ! !
+ ! ! ! +--H011
+ ! ! +-------------34 +-------------31
+ +--3 ! ! ! +--H003
+ ! ! ! !
+ ! ! +-21 +--H014
+ ! ! ! +-------33
+ ! ! ! ! +--H017
+ ! ! +----15
+ +--5 ! +-----H010
+ ! +----12
+ ! ! +--H033
+ ! +-18
+ ! +--H027
+ !
+ ! +-----------H029
+ +----------------------20
+ ! +--------H034
+ +--4
+ ! +-----H022
+ +-32
+ ! +--H013
+ +-23
+ +--H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 1 no ..... .....
+ 1 17 no ..... .....
+ 17 22 yes ...1. .....
+ 22 H035 yes ..... ....0
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+ 5 20 yes 0.... .....
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+ 4 H034 no ..... .....
+ 4 32 yes ....1 .....
+ 32 H022 no ..... .....
+ 32 23 yes ..... 0....
+ 23 H013 no ..... .....
+ 23 H019 yes ..... ....1
+
+
+
+
+
+ +--H035
+ +----------------------------------------22
+ ! +--H007
+ +----------------------------------------------------------17
+ ! ! +--------------------------------------H025
+ ! ! !
+ ! +----25 +-----------------------------------H004
+ ! ! !
+ ! +--2 +--------------------------------H024
+ ! ! !
+ ! ! ! +-----H005
+ ! +-14 +----------------------30
+ ! ! ! ! +--H031
+ ! ! ! +-28
+ ! +-19 +--H008
+ ! !
+ ! ! +--------------------H016
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+ ! ! +-----------------H032
+--1 +-24
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+ ! +-26
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+ ! +--8
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+ ! +-29
+ ! ! +-----H009
+ ! +-16
+ ! ! +--H023
+ ! +--6
+ ! +--H026
+ !
+ ! +--ANCE
+ ! +----------------------------------------------------35
+ ! ! +--H030
+ +----------------------------------------------27
+ ! +--------------------------------------------------H006
+ ! !
+ +----10 +-----------------------------------------------H028
+ ! !
+ +-13 +--------------------------------------------H015
+ ! !
+ ! ! +-----------------------------------------H001
+ +--9 !
+ ! ! +--------------------------------------H020
+ ! ! !
+ +-11 ! +--------------------H018
+ ! ! !
+ ! ! ! +--H011
+ ! ! +-------------34 +-------------31
+ +--3 ! ! ! +--H003
+ ! ! ! !
+ ! ! +-21 +--H014
+ ! ! ! +-------33
+ ! ! ! ! +--H017
+ ! ! +----15
+ +--5 ! +-----H010
+ ! +----12
+ ! ! +--H033
+ ! +-18
+ ! +--H027
+ !
+ ! +-----------H029
+ +----------------------20
+ ! +--------H034
+ +--4
+ ! +-----H022
+ +-32
+ ! +--H013
+ +-23
+ +--H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 1 no ..... .....
+ 1 17 no ..... .....
+ 17 22 yes ...1. .....
+ 22 H035 yes ..... ....0
+ 22 H007 no ..... .....
+ 17 25 yes 0.... .....
+ 25 H025 no ..... .....
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+ 2 H004 no ..... .....
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+ 14 19 no ..... .....
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+ 4 32 yes ....1 .....
+ 32 H022 no ..... .....
+ 32 23 yes ..... 0....
+ 23 H013 no ..... .....
+ 23 H019 yes ..... ....1
+
+
+
+
+
+ +--H035
+ +----------------------------------------22
+ ! +--H007
+ +----------------------------------------------------------17
+ ! ! +--------------------------------------H025
+ ! ! !
+ ! +----25 +-----------------------------------H004
+ ! ! !
+ ! ! ! +-----H005
+ ! +--2 +-------------------------30
+ ! ! ! ! +--H031
+ ! ! ! +-28
+ ! +-19 +--H008
+ ! !
+ ! ! +-----------------------H024
+ ! ! !
+ ! +-------14 +--------------------H016
+ ! ! !
+ ! +--7 +-----------------H032
+--1 ! !
+ ! +-24 +--------------H021
+ ! ! !
+ ! +-26 +-----------H002
+ ! ! !
+ ! +--8 +--H012
+ ! ! +----29
+ ! ! ! +--H009
+ ! +-16
+ ! ! +--H023
+ ! +-----6
+ ! +--H026
+ !
+ ! +--ANCE
+ ! +----------------------------------------------------35
+ ! ! +--H030
+ +----------------------------------------------27
+ ! +--------------------------------------------------H006
+ ! !
+ +----10 +-----------------------------------------------H028
+ ! !
+ +-13 +--------------------------------------------H015
+ ! !
+ ! ! +-----------------------------------------H001
+ +--9 !
+ ! ! +--------------------------------------H020
+ ! ! !
+ +-11 ! +--------------------H018
+ ! ! !
+ ! ! ! +--H011
+ ! ! +-------------34 +-------------31
+ +--3 ! ! ! +--H003
+ ! ! ! !
+ ! ! +-21 +--H014
+ ! ! ! +-------33
+ ! ! ! ! +--H017
+ ! ! +----15
+ +--5 ! +-----H010
+ ! +----12
+ ! ! +--H033
+ ! +-18
+ ! +--H027
+ !
+ ! +-----------H029
+ +----------------------20
+ ! +--------H034
+ +--4
+ ! +-----H022
+ +-32
+ ! +--H013
+ +-23
+ +--H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 1 no ..... .....
+ 1 17 no ..... .....
+ 17 22 yes ...1. .....
+ 22 H035 yes ..... ....0
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+ 17 25 yes 0.... .....
+ 25 H025 no ..... .....
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+ 19 30 no ..... .....
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+ 28 H008 no ..... .....
+ 19 14 no ..... .....
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+ 7 H016 no ..... .....
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+ 16 29 no ..... .....
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+ 5 34 no ..... .....
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+ 12 H010 no ..... .....
+ 12 18 no ..... .....
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+ 5 20 yes 0.... .....
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+ 4 32 yes ....1 .....
+ 32 H022 no ..... .....
+ 32 23 yes ..... 0....
+ 23 H013 no ..... .....
+ 23 H019 yes ..... ....1
+
+
+
+
+
+ +--H035
+ +----------------------------------------22
+ ! +--H007
+ +----------------------------------------------------------17
+ ! ! +--------------------------------------H025
+ ! ! !
+ ! +----25 +-----------------------------------H004
+ ! ! !
+ ! +--2 +--------------------------------H024
+ ! ! !
+ ! ! ! +-----H005
+ ! +-14 +----------------------30
+ ! ! ! ! +--H031
+ ! ! ! +-28
+ ! +-19 +--H008
+ ! !
+ ! ! +--------------------H016
+ ! +--------7
+ ! ! +-----------------H032
+--1 +-24
+ ! ! +--------------H021
+ ! +-26
+ ! ! +-----------H002
+ ! +--8
+ ! ! +--------H009
+ ! +-16
+ ! ! +-----H012
+ ! +-29
+ ! ! +--H023
+ ! +--6
+ ! +--H026
+ !
+ ! +--ANCE
+ ! +----------------------------------------------------35
+ ! ! +--H030
+ +----------------------------------------------27
+ ! +--------------------------------------------------H006
+ ! !
+ +----10 +-----------------------------------------------H028
+ ! !
+ +-13 +--------------------------------------------H015
+ ! !
+ ! ! +-----------------------------------------H001
+ +--9 !
+ ! ! +--------------------------------------H020
+ ! ! !
+ +-11 ! +--------------------H018
+ ! ! !
+ ! ! ! +--H011
+ ! ! +-------------34 +-------------31
+ +--3 ! ! ! +--H003
+ ! ! ! !
+ ! ! +-21 +--H014
+ ! ! ! +-------33
+ ! ! ! ! +--H017
+ ! ! +----15
+ +--5 ! +--H033
+ ! ! +-18
+ ! +----12 +--H010
+ ! !
+ ! +-----H027
+ !
+ ! +-----------H029
+ +----------------------20
+ ! +--------H034
+ +--4
+ ! +-----H022
+ +-32
+ ! +--H013
+ +-23
+ +--H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 1 no ..... .....
+ 1 17 no ..... .....
+ 17 22 yes ...1. .....
+ 22 H035 yes ..... ....0
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+ 17 25 yes 0.... .....
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+ 2 14 yes ..... 0....
+ 14 H024 yes ..... ...1.
+ 14 19 no ..... .....
+ 19 30 no ..... .....
+ 30 H005 yes ..... ....0
+ 30 28 no ..... .....
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+ 7 H016 no ..... .....
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+ 16 29 no ..... .....
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+ 5 34 no ..... .....
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+ 5 20 yes 0.... .....
+ 20 H029 no ..... .....
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+ 4 32 yes ....1 .....
+ 32 H022 no ..... .....
+ 32 23 yes ..... 0....
+ 23 H013 no ..... .....
+ 23 H019 yes ..... ....1
+
+
+
+
+
+ +--H035
+ +----------------------------------------22
+ ! +--H007
+ +----------------------------------------------------------17
+ ! ! +--------------------------------------H025
+ ! ! !
+ ! +----25 +-----------------------------------H004
+ ! ! !
+ ! ! ! +--H008
+ ! +--2 +----------------------------19
+ ! ! ! +--H024
+ ! ! !
+ ! +-14 +--H005
+ ! ! +----------------------30
+ ! ! ! +--H031
+ ! +----28
+ ! ! +--------------------H016
+ ! +-----7
+ ! ! +-----------------H032
+--1 +-24
+ ! ! +--------------H021
+ ! +-26
+ ! ! +-----------H002
+ ! +--8
+ ! ! +--------H009
+ ! +-16
+ ! ! +-----H012
+ ! +-29
+ ! ! +--H023
+ ! +--6
+ ! +--H026
+ !
+ ! +--ANCE
+ ! +----------------------------------------------------35
+ ! ! +--H030
+ +----------------------------------------------27
+ ! +--------------------------------------------------H006
+ ! !
+ +----10 +-----------------------------------------------H028
+ ! !
+ +-13 +--------------------------------------------H015
+ ! !
+ +--9 +-----------------------------------------H001
+ ! !
+ ! ! +--------------------------------------H020
+ +-11 !
+ ! ! +-----------------H018
+ ! ! !
+ ! ! ! +--H011
+ +--3 +----------------34 +----------31
+ ! ! ! ! +--H003
+ ! ! ! !
+ ! ! +-21 +--H014
+ ! ! ! +----33
+ ! ! ! ! +--H017
+ +--5 +----15
+ ! ! +--H010
+ ! +----12
+ ! +--H027
+ !
+ ! +--------------H029
+ +-------------------20
+ ! +-----------H033
+ +-18
+ ! +--------H034
+ +--4
+ ! +-----H022
+ +-32
+ ! +--H013
+ +-23
+ +--H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 1 no ..... .....
+ 1 17 no ..... .....
+ 17 22 yes ...1. .....
+ 22 H035 yes ..... ....0
+ 22 H007 no ..... .....
+ 17 25 yes 0.... .....
+ 25 H025 no ..... .....
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+ 2 14 yes ..... 0....
+ 14 19 no ..... .....
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+ 14 28 no ..... .....
+ 28 30 no ..... .....
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+ 28 7 yes ...1. .....
+ 7 H016 no ..... .....
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+ 8 H002 no ..... .....
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+ 16 29 no ..... .....
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+ 27 35 no ..... .....
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+ 5 34 no ..... .....
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+ 4 32 yes ....1 .....
+ 32 H022 no ..... .....
+ 32 23 yes ..... 0....
+ 23 H013 no ..... .....
+ 23 H019 yes ..... ....1
+
+
+
+
+
+ +--H035
+ +----------------------------------------22
+ ! +--H007
+ +----------------------------------------------------------17
+ ! ! +--------------------------------------H025
+ ! ! !
+ ! +----25 +-----------------------------------H004
+ ! ! !
+ ! +--2 +--------------------------------H024
+ ! ! !
+ ! ! ! +-----H031
+ ! +-14 +----------------------28
+ ! ! ! ! +--H005
+ ! ! ! +-30
+ ! +-19 +--H008
+ ! !
+ ! ! +--------------------H016
+ ! +--------7
+ ! ! +-----------------H032
+--1 +-24
+ ! ! +--------------H021
+ ! +-26
+ ! ! +-----------H002
+ ! +--8
+ ! ! +--------H009
+ ! +-16
+ ! ! +-----H012
+ ! +-29
+ ! ! +--H023
+ ! +--6
+ ! +--H026
+ !
+ ! +--ANCE
+ ! +----------------------------------------------------35
+ ! ! +--H030
+ +----------------------------------------------27
+ ! +--------------------------------------------------H006
+ ! !
+ +----10 +-----------------------------------------------H028
+ ! !
+ +-13 +--------------------------------------------H015
+ ! !
+ +--9 +-----------------------------------------H001
+ ! !
+ ! ! +--------------------------------------H020
+ +-11 !
+ ! ! +-----------------H018
+ ! ! !
+ ! ! ! +--H011
+ +--3 +----------------34 +----------31
+ ! ! ! ! +--H003
+ ! ! ! !
+ ! ! +-21 +--H014
+ ! ! ! +----33
+ ! ! ! ! +--H017
+ +--5 +----15
+ ! ! +--H010
+ ! +----12
+ ! +--H027
+ !
+ ! +--------------H029
+ +-------------------20
+ ! +-----------H033
+ +-18
+ ! +--------H034
+ +--4
+ ! +-----H022
+ +-32
+ ! +--H013
+ +-23
+ +--H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 1 no ..... .....
+ 1 17 no ..... .....
+ 17 22 yes ...1. .....
+ 22 H035 yes ..... ....0
+ 22 H007 no ..... .....
+ 17 25 yes 0.... .....
+ 25 H025 no ..... .....
+ 25 2 yes ....1 .....
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+ 14 H024 yes ..... ...1.
+ 14 19 no ..... .....
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+ 26 8 yes 1.... .....
+ 8 H002 no ..... .....
+ 8 16 yes ....0 .....
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+ 16 29 no ..... .....
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+ 29 6 yes ..... 1....
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+ 1 27 no ..... .....
+ 27 35 no ..... .....
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+ 11 H001 no ..... .....
+ 11 3 no ..... .....
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+ 5 34 no ..... .....
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+ 33 H017 no ..... .....
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+ 5 20 yes 0.... .....
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+ 18 4 no ..... .....
+ 4 H034 no ..... .....
+ 4 32 yes ....1 .....
+ 32 H022 no ..... .....
+ 32 23 yes ..... 0....
+ 23 H013 no ..... .....
+ 23 H019 yes ..... ....1
+
+
+
+
+
+ +--H035
+ +----------------------------------------22
+ ! +--H007
+ +----------------------------------------------------------17
+ ! ! +--------------------------------------H025
+ ! ! !
+ ! +----25 +-----------------------------------H004
+ ! ! !
+ ! +--2 +--------------------------------H024
+ ! ! !
+ ! ! ! +--H005
+ ! +-14 +-30
+ ! ! +----------------------28 +--H031
+ ! ! ! !
+ ! +-19 +-----H008
+ ! !
+ ! ! +--------------------H016
+ ! +--------7
+ ! ! +-----------------H032
+--1 +-24
+ ! ! +--------------H021
+ ! +-26
+ ! ! +-----------H002
+ ! +--8
+ ! ! +--------H009
+ ! +-16
+ ! ! +-----H012
+ ! +-29
+ ! ! +--H023
+ ! +--6
+ ! +--H026
+ !
+ ! +--ANCE
+ ! +----------------------------------------------------35
+ ! ! +--H030
+ +----------------------------------------------27
+ ! +--------------------------------------------------H006
+ ! !
+ +----10 +-----------------------------------------------H028
+ ! !
+ +-13 +--------------------------------------------H015
+ ! !
+ +--9 +-----------------------------------------H001
+ ! !
+ ! ! +--------------------------------------H020
+ +-11 !
+ ! ! +-----------------H018
+ ! ! !
+ ! ! ! +--H011
+ +--3 +----------------34 +----------31
+ ! ! ! ! +--H003
+ ! ! ! !
+ ! ! +-21 +--H014
+ ! ! ! +----33
+ ! ! ! ! +--H017
+ +--5 +----15
+ ! ! +--H010
+ ! +----12
+ ! +--H027
+ !
+ ! +--------------H029
+ +-------------------20
+ ! +-----------H033
+ +-18
+ ! +--------H034
+ +--4
+ ! +-----H022
+ +-32
+ ! +--H013
+ +-23
+ +--H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 1 no ..... .....
+ 1 17 no ..... .....
+ 17 22 yes ...1. .....
+ 22 H035 yes ..... ....0
+ 22 H007 no ..... .....
+ 17 25 yes 0.... .....
+ 25 H025 no ..... .....
+ 25 2 yes ....1 .....
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+ 2 14 yes ..... 0....
+ 14 H024 yes ..... ...1.
+ 14 19 no ..... .....
+ 19 28 no ..... .....
+ 28 30 no ..... .....
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+ 30 H031 yes ..... ..1..
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+ 19 7 yes ...1. .....
+ 7 H016 no ..... .....
+ 7 24 no ..... .....
+ 24 H032 yes ..... .1...
+ 24 26 yes ..1.. .....
+ 26 H021 yes ..... ..1..
+ 26 8 yes 1.... .....
+ 8 H002 no ..... .....
+ 8 16 yes ....0 .....
+ 16 H009 yes ..... ..1..
+ 16 29 no ..... .....
+ 29 H012 no ..... .....
+ 29 6 yes ..... 1....
+ 6 H023 no ..... .....
+ 6 H026 yes 0.... .....
+ 1 27 no ..... .....
+ 27 35 no ..... .....
+ 35 ANCE no ..... .....
+ 35 H030 yes ..... ...1.
+ 27 10 yes .0... .....
+ 10 H006 no ..... .....
+ 10 13 yes ..... .1.?.
+ 13 H028 maybe ..... ...1.
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+ 9 H015 maybe ..... ...0.
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+ 4 32 yes ....1 .....
+ 32 H022 no ..... .....
+ 32 23 yes ..... 0....
+ 23 H013 no ..... .....
+ 23 H019 yes ..... ....1
+
+
+
+
+
+ +--H035
+ +----------------------------------------22
+ ! +--H007
+ +----------------------------------------------------------17
+ ! ! +--------------------------------------H025
+ ! ! !
+ ! +----25 +-----------------------------------H004
+ ! ! !
+ ! +--2 +--------------------------------H024
+ ! ! !
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+ ! ! ! ! +--H031
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+ ! !
+ ! ! +--------------------H016
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+ ! +-29
+ ! ! +--H023
+ ! +--6
+ ! +--H026
+ !
+ ! +--ANCE
+ ! +----------------------------------------------------35
+ ! ! +--H030
+ +----------------------------------------------27
+ ! +--------------------------------------------------H006
+ ! !
+ +----10 +-----------------------------------------------H028
+ ! !
+ +-13 +--------------------------------------------H015
+ ! !
+ +--9 +-----------------------------------------H001
+ ! !
+ ! ! +--------------------------------------H020
+ +-11 !
+ ! ! +-----------------H018
+ ! ! !
+ ! ! ! +--H011
+ +--3 +----------------34 +----------31
+ ! ! ! ! +--H003
+ ! ! ! !
+ ! ! +-21 +--H014
+ ! ! ! +----33
+ ! ! ! ! +--H017
+ +--5 +----15
+ ! ! +--H010
+ ! +----12
+ ! +--H027
+ !
+ ! +--------------H029
+ +-------------------20
+ ! +-----------H033
+ +-18
+ ! +--------H034
+ +--4
+ ! +-----H022
+ +-32
+ ! +--H013
+ +-23
+ +--H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 1 no ..... .....
+ 1 17 no ..... .....
+ 17 22 yes ...1. .....
+ 22 H035 yes ..... ....0
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+ 17 25 yes 0.... .....
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+ 14 19 no ..... .....
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+ 23 H019 yes ..... ....1
+
+
+
+
+
+ +--H035
+ +----------------------------------------22
+ ! +--H007
+ +----------------------------------------------------------17
+ ! ! +--------------------------------------H025
+ ! ! !
+ ! +----25 +-----------------------------------H004
+ ! ! !
+ ! +--2 +--------------------------------H024
+ ! ! !
+ ! +-14 +-----------------------------H008
+ ! ! !
+ ! +-19 +--H005
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+ ! +-16
+ ! ! +-----H012
+ ! +-29
+ ! ! +--H023
+ ! +--6
+ ! +--H026
+ !
+ ! +--ANCE
+ ! +----------------------------------------------------35
+ ! ! +--H030
+ +----------------------------------------------27
+ ! +--------------------------------------------------H006
+ ! !
+ +----10 +-----------------------------------------------H028
+ ! !
+ +-13 +--------------------------------------------H015
+ ! !
+ +--9 +-----------------------------------------H001
+ ! !
+ ! ! +--------------------------------------H020
+ +-11 !
+ ! ! +-----------------H018
+ ! ! !
+ ! ! ! +--H011
+ +--3 +----------------34 +----------31
+ ! ! ! ! +--H003
+ ! ! ! !
+ ! ! +-21 +--H014
+ ! ! ! +----33
+ ! ! ! ! +--H017
+ +--5 +----15
+ ! ! +--H010
+ ! +----12
+ ! +--H027
+ !
+ ! +--------------H029
+ +-------------------20
+ ! +-----------H033
+ +-18
+ ! +--------H034
+ +--4
+ ! +-----H022
+ +-32
+ ! +--H013
+ +-23
+ +--H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 1 no ..... .....
+ 1 17 no ..... .....
+ 17 22 yes ...1. .....
+ 22 H035 yes ..... ....0
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+ 17 25 yes 0.... .....
+ 25 H025 no ..... .....
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+ 14 19 no ..... .....
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+ 19 28 no ..... .....
+ 28 30 no ..... .....
+ 30 H005 yes ..... ....0
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+ 8 H002 no ..... .....
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+ 16 29 no ..... .....
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+ 4 32 yes ....1 .....
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+ 32 23 yes ..... 0....
+ 23 H013 no ..... .....
+ 23 H019 yes ..... ....1
+
+
+
+
+
+ +--H035
+ +----------------------------------------22
+ ! +--H007
+ +----------------------------------------------------------17
+ ! ! +--------------------------------------H025
+ ! ! !
+ ! +----25 +-----------------------------------H004
+ ! ! !
+ ! +--2 +--------------------------------H024
+ ! ! !
+ ! +-14 +--H005
+ ! ! +-------------------------30
+ ! ! ! +--H031
+ ! +-28
+ ! ! +-----------------------H008
+ ! +----19
+ ! ! +--------------------H016
+ ! +--7
+ ! ! +-----------------H032
+--1 +-24
+ ! ! +--------------H021
+ ! +-26
+ ! ! +-----------H002
+ ! +--8
+ ! ! +--------H009
+ ! +-16
+ ! ! +-----H012
+ ! +-29
+ ! ! +--H023
+ ! +--6
+ ! +--H026
+ !
+ ! +--ANCE
+ ! +----------------------------------------------------35
+ ! ! +--H030
+ +----------------------------------------------27
+ ! +--------------------------------------------------H006
+ ! !
+ +----10 +-----------------------------------------------H028
+ ! !
+ +-13 +--------------------------------------------H015
+ ! !
+ +--9 +-----------------------------------------H001
+ ! !
+ ! ! +--------------------------------------H020
+ +-11 !
+ ! ! +-----------------H018
+ ! ! !
+ ! ! ! +--H011
+ +--3 +----------------34 +----------31
+ ! ! ! ! +--H003
+ ! ! ! !
+ ! ! +-21 +--H014
+ ! ! ! +----33
+ ! ! ! ! +--H017
+ +--5 +----15
+ ! ! +--H010
+ ! +----12
+ ! +--H027
+ !
+ ! +--------------H029
+ +-------------------20
+ ! +-----------H033
+ +-18
+ ! +--------H034
+ +--4
+ ! +-----H022
+ +-32
+ ! +--H013
+ +-23
+ +--H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 1 no ..... .....
+ 1 17 no ..... .....
+ 17 22 yes ...1. .....
+ 22 H035 yes ..... ....0
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+ 17 25 yes 0.... .....
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+ 14 28 no ..... .....
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+ 28 19 no ..... .....
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+ 4 32 yes ....1 .....
+ 32 H022 no ..... .....
+ 32 23 yes ..... 0....
+ 23 H013 no ..... .....
+ 23 H019 yes ..... ....1
+
+
+
+
+
+ +--H035
+ +----------------------------------------22
+ ! +--H007
+ +----------------------------------------------------------17
+ ! ! +--------------------------------------H025
+ ! ! !
+ ! +----25 +-----------------------------------H004
+ ! ! !
+ ! +--2 +--------------------------------H008
+ ! ! !
+ ! +-19 +-----------------------------H024
+ ! ! !
+ ! +-14 +--H005
+ ! ! +----------------------30
+ ! ! ! +--H031
+ ! +-28
+ ! ! +--------------------H016
+ ! +-----7
+ ! ! +-----------------H032
+--1 +-24
+ ! ! +--------------H021
+ ! +-26
+ ! ! +-----------H002
+ ! +--8
+ ! ! +--------H009
+ ! +-16
+ ! ! +-----H012
+ ! +-29
+ ! ! +--H023
+ ! +--6
+ ! +--H026
+ !
+ ! +--ANCE
+ ! +----------------------------------------------------35
+ ! ! +--H030
+ +----------------------------------------------27
+ ! +--------------------------------------------------H006
+ ! !
+ +----10 +-----------------------------------------------H028
+ ! !
+ +-13 +--------------------------------------------H015
+ ! !
+ +--9 +-----------------------------------------H001
+ ! !
+ ! ! +--------------------------------------H020
+ +-11 !
+ ! ! +-----------------H018
+ ! ! !
+ ! ! +----------------34 +--------------H011
+ +--3 ! ! !
+ ! ! ! ! +-----H003
+ ! ! +-31 +----21
+ ! ! ! ! ! +--H014
+ ! ! ! ! +-33
+ +--5 +-15 +--H017
+ ! !
+ ! ! +--H010
+ ! +-------12
+ ! +--H027
+ !
+ ! +--------------H029
+ +-------------------20
+ ! +-----------H033
+ +-18
+ ! +--------H034
+ +--4
+ ! +-----H022
+ +-32
+ ! +--H013
+ +-23
+ +--H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 1 no ..... .....
+ 1 17 no ..... .....
+ 17 22 yes ...1. .....
+ 22 H035 yes ..... ....0
+ 22 H007 no ..... .....
+ 17 25 yes 0.... .....
+ 25 H025 no ..... .....
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+ 2 19 yes ..... 0....
+ 19 H008 no ..... .....
+ 19 14 no ..... .....
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+ 14 28 no ..... .....
+ 28 30 no ..... .....
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+ 26 H021 yes ..... ..1..
+ 26 8 yes 1.... .....
+ 8 H002 no ..... .....
+ 8 16 yes ....0 .....
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+ 16 29 no ..... .....
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+ 1 27 no ..... .....
+ 27 35 no ..... .....
+ 35 ANCE no ..... .....
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+ 5 34 no ..... .....
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+ 15 21 no ..... .....
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+ 18 4 no ..... .....
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+ 4 32 yes ....1 .....
+ 32 H022 no ..... .....
+ 32 23 yes ..... 0....
+ 23 H013 no ..... .....
+ 23 H019 yes ..... ....1
+
+
+
+
+
+ +--H035
+ +----------------------------------------22
+ ! +--H007
+ +----------------------------------------------------------17
+ ! ! +--------------------------------------H025
+ ! ! !
+ ! +----25 +-----------------------------------H004
+ ! ! !
+ ! +--2 +--------------------------------H008
+ ! ! !
+ ! +-19 +-----------------------------H024
+ ! ! !
+ ! +-14 +--H005
+ ! ! +----------------------30
+ ! ! ! +--H031
+ ! +-28
+ ! ! +--------------------H016
+ ! +-----7
+ ! ! +-----------------H032
+--1 +-24
+ ! ! +--------------H021
+ ! +-26
+ ! ! +-----------H002
+ ! +--8
+ ! ! +--------H009
+ ! +-16
+ ! ! +-----H012
+ ! +-29
+ ! ! +--H023
+ ! +--6
+ ! +--H026
+ !
+ ! +--ANCE
+ ! +----------------------------------------------------35
+ ! ! +--H030
+ +----------------------------------------------27
+ ! +--------------------------------------------------H006
+ ! !
+ +----10 +-----------------------------------------------H028
+ ! !
+ +-13 +--------------------------------------------H015
+ ! !
+ +--9 +-----------------------------------------H001
+ ! !
+ ! ! +--------------------------------------H020
+ +-11 !
+ ! ! +-----------------H018
+ ! ! !
+ ! ! +----------------34 +--------------H011
+ +--3 ! ! !
+ ! ! +-31 +--H014
+ ! ! ! +-------33
+ ! ! ! ! +--H017
+ ! ! +-15
+ +--5 ! +-----H003
+ ! +----21
+ ! ! +--H010
+ ! +-12
+ ! +--H027
+ !
+ ! +--------------H029
+ +-------------------20
+ ! +-----------H033
+ +-18
+ ! +--------H034
+ +--4
+ ! +-----H022
+ +-32
+ ! +--H013
+ +-23
+ +--H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 1 no ..... .....
+ 1 17 no ..... .....
+ 17 22 yes ...1. .....
+ 22 H035 yes ..... ....0
+ 22 H007 no ..... .....
+ 17 25 yes 0.... .....
+ 25 H025 no ..... .....
+ 25 2 yes ....1 .....
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+ 2 19 yes ..... 0....
+ 19 H008 no ..... .....
+ 19 14 no ..... .....
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+ 14 28 no ..... .....
+ 28 30 no ..... .....
+ 30 H005 yes ..... ....0
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+ 28 7 yes ...1. .....
+ 7 H016 no ..... .....
+ 7 24 no ..... .....
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+ 24 26 yes ..1.. .....
+ 26 H021 yes ..... ..1..
+ 26 8 yes 1.... .....
+ 8 H002 no ..... .....
+ 8 16 yes ....0 .....
+ 16 H009 yes ..... ..1..
+ 16 29 no ..... .....
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+ 29 6 yes ..... 1....
+ 6 H023 no ..... .....
+ 6 H026 yes 0.... .....
+ 1 27 no ..... .....
+ 27 35 no ..... .....
+ 35 ANCE no ..... .....
+ 35 H030 yes ..... ...1.
+ 27 10 yes .0... .....
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+ 10 13 yes ..... .1.?.
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+ 11 H001 no ..... .....
+ 11 3 no ..... .....
+ 3 H020 yes ..... ....0
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+ 5 34 no ..... .....
+ 34 H018 no ..... .....
+ 34 31 yes ...1. .....
+ 31 H011 no ..... .....
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+ 15 33 yes ..1.. .....
+ 33 H014 yes 0.... .....
+ 33 H017 no ..... .....
+ 15 21 no ..... .....
+ 21 H003 yes ....1 .....
+ 21 12 yes ..... ....0
+ 12 H010 no ..... .....
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+ 5 20 yes 0.... .....
+ 20 H029 no ..... .....
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+ 18 4 no ..... .....
+ 4 H034 no ..... .....
+ 4 32 yes ....1 .....
+ 32 H022 no ..... .....
+ 32 23 yes ..... 0....
+ 23 H013 no ..... .....
+ 23 H019 yes ..... ....1
+
+
+
+
+
+ +--H035
+ +----------------------------------------22
+ ! +--H007
+ +----------------------------------------------------------17
+ ! ! +--------------------------------------H025
+ ! ! !
+ ! +----25 +-----------------------------------H004
+ ! ! !
+ ! +--2 +--------------------------------H008
+ ! ! !
+ ! +-19 +-----------------------------H024
+ ! ! !
+ ! ! ! +--H005
+ ! +-14 +----------------------30
+ ! ! ! +--H031
+ ! ! !
+ ! +-28 +--H032
+ ! ! +----------------24
+ ! ! ! +--H016
+--1 +-----7
+ ! ! +--------------H021
+ ! +----26
+ ! ! +-----------H002
+ ! +--8
+ ! ! +--------H009
+ ! +-16
+ ! ! +-----H012
+ ! +-29
+ ! ! +--H023
+ ! +--6
+ ! +--H026
+ !
+ ! +--ANCE
+ ! +----------------------------------------------------35
+ ! ! +--H030
+ +----------------------------------------------27
+ ! +--------------------------------------------------H006
+ ! !
+ +----10 +-----------------------------------------------H028
+ ! !
+ +-13 +--------------------------------------------H015
+ ! !
+ +--9 +-----------------------------------------H001
+ ! !
+ ! ! +--------------------------------------H020
+ +-11 !
+ ! ! +-----------------H018
+ ! ! !
+ ! ! +----------------34 +--------------H003
+ +--3 ! ! !
+ ! ! +-21 +-----------H011
+ ! ! ! !
+ ! ! +-31 +--H014
+ ! ! ! +----33
+ +--5 ! ! +--H017
+ ! +-15
+ ! ! +--H010
+ ! +----12
+ ! +--H027
+ !
+ ! +--------------H029
+ +-------------------20
+ ! +-----------H033
+ +-18
+ ! +--------H034
+ +--4
+ ! +-----H022
+ +-32
+ ! +--H013
+ +-23
+ +--H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 1 no ..... .....
+ 1 17 no ..... .....
+ 17 22 yes ...1. .....
+ 22 H035 yes ..... ....0
+ 22 H007 no ..... .....
+ 17 25 yes 0.... .....
+ 25 H025 no ..... .....
+ 25 2 yes ....1 .....
+ 2 H004 no ..... .....
+ 2 19 yes ..... 0....
+ 19 H008 no ..... .....
+ 19 14 no ..... .....
+ 14 H024 yes ..... ...1.
+ 14 28 no ..... .....
+ 28 30 no ..... .....
+ 30 H005 yes ..... ....0
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+ 28 7 yes ...1. .....
+ 7 24 no ..... .....
+ 24 H032 yes ..... .1...
+ 24 H016 no ..... .....
+ 7 26 yes ..1.. .....
+ 26 H021 yes ..... ..1..
+ 26 8 yes 1.... .....
+ 8 H002 no ..... .....
+ 8 16 yes ....0 .....
+ 16 H009 yes ..... ..1..
+ 16 29 no ..... .....
+ 29 H012 no ..... .....
+ 29 6 yes ..... 1....
+ 6 H023 no ..... .....
+ 6 H026 yes 0.... .....
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+ 27 35 no ..... .....
+ 35 ANCE no ..... .....
+ 35 H030 yes ..... ...1.
+ 27 10 yes .0... .....
+ 10 H006 no ..... .....
+ 10 13 yes ..... .1.?.
+ 13 H028 maybe ..... ...1.
+ 13 9 yes ..... ..1..
+ 9 H015 maybe ..... ...0.
+ 9 11 maybe ..... ...1.
+ 11 H001 no ..... .....
+ 11 3 no ..... .....
+ 3 H020 yes ..... ....0
+ 3 5 yes .1... .....
+ 5 34 no ..... .....
+ 34 H018 no ..... .....
+ 34 21 yes ...1. .....
+ 21 H003 yes ....1 .....
+ 21 31 no ..... .....
+ 31 H011 no ..... .....
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+ 15 33 maybe ..1.. .....
+ 33 H014 yes 0.... .....
+ 33 H017 no ..... .....
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+ 12 H027 yes ..1.. 0....
+ 5 20 yes 0.... .....
+ 20 H029 no ..... .....
+ 20 18 yes ..... ....0
+ 18 H033 yes ...1. .....
+ 18 4 no ..... .....
+ 4 H034 no ..... .....
+ 4 32 yes ....1 .....
+ 32 H022 no ..... .....
+ 32 23 yes ..... 0....
+ 23 H013 no ..... .....
+ 23 H019 yes ..... ....1
+
+
+
+
+
+ +--------------------------------------------------------------------------------------------------------H030
+ !
+ ! +--H035
+ ! +----------------------------------------22
+ ! ! +--H007
+ ! +-------------------------------------------------------17
+ ! ! ! +--------------------------------------H025
+ ! ! ! !
+ ! ! +----25 +-----------------------------------H004
+ ! ! ! !
+-27 ! +--2 +--------------------------------H008
+ ! ! ! !
+ ! ! +-19 +--H031
+ ! ! ! +-------------------------28
+ ! ! ! ! +--H024
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+ ! ! ! +-----------------------H005
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+ ! ! ! +--------------------H032
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+ +--1 ! +-----------------H016
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+ ! +-16
+ ! ! +-----H012
+ ! +-29
+ ! ! +--H023
+ ! +--6
+ ! +--H026
+ !
+ ! +-----------------------------------------------------ANCE
+ ! !
+ +----------------------------------------------35 +--------------------------------------------------H006
+ ! !
+ +-10 +-----------------------------------------------H028
+ ! !
+ +-13 +--------------------------------------------H015
+ ! !
+ +--9 +-----------------------------------------H001
+ ! !
+ ! ! +--------------------------------------H020
+ +-11 !
+ ! ! +-----------------H018
+ ! ! !
+ ! ! +----------------34 +--------------H003
+ +--3 ! ! !
+ ! ! +-21 +-----------H011
+ ! ! ! !
+ ! ! +-31 +--H014
+ ! ! ! +----33
+ +--5 ! ! +--H017
+ ! +-15
+ ! ! +--H010
+ ! +----12
+ ! +--H027
+ !
+ ! +--------------H029
+ +-------------------20
+ ! +-----------H033
+ +-18
+ ! +--------H034
+ +--4
+ ! +-----H022
+ +-32
+ ! +--H013
+ +-23
+ +--H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 27 no ..... .....
+ 27 H030 yes ..... ...1.
+ 27 1 no ..... .....
+ 1 17 no ..... .....
+ 17 22 yes ...1. .....
+ 22 H035 yes ..... ....0
+ 22 H007 no ..... .....
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+ 25 H025 no ..... .....
+ 25 2 yes ....1 .....
+ 2 H004 no ..... .....
+ 2 19 yes ..... 0....
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+ 19 14 no ..... .....
+ 14 28 no ..... .....
+ 28 H031 yes ..... ..1..
+ 28 H024 yes ..... ...1.
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+ 30 H005 yes ..... ....0
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+ 24 H032 yes ..... .1...
+ 24 7 no ..... .....
+ 7 H016 no ..... .....
+ 7 26 yes ..1.. .....
+ 26 H021 yes ..... ..1..
+ 26 8 yes 1.... .....
+ 8 H002 no ..... .....
+ 8 16 yes ....0 .....
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+ 29 6 yes ..... 1....
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+ 6 H026 yes 0.... .....
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+ 10 H006 no ..... .....
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+ 11 H001 no ..... .....
+ 11 3 no ..... .....
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+ 5 34 no ..... .....
+ 34 H018 no ..... .....
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+ 21 H003 yes ....1 .....
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+ 31 H011 no ..... .....
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+ 5 20 yes 0.... .....
+ 20 H029 no ..... .....
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+ 18 H033 yes ...1. .....
+ 18 4 no ..... .....
+ 4 H034 no ..... .....
+ 4 32 yes ....1 .....
+ 32 H022 no ..... .....
+ 32 23 yes ..... 0....
+ 23 H013 no ..... .....
+ 23 H019 yes ..... ....1
+
+
+
+
+
+ +--------------------------------------------------------------------------------------------------------H030
+ !
+ ! +--H035
+ ! +----------------------------------------22
+ ! ! +--H007
+ ! +-------------------------------------------------------17
+ ! ! ! +--------------------------------------H025
+ ! ! ! !
+ ! ! +----25 +-----------------------------------H004
+ ! ! ! !
+-27 ! +--2 +--H031
+ ! ! ! +----------------------------28
+ ! ! ! ! +--H008
+ ! ! +-19
+ ! ! ! +--------------------------H024
+ ! ! +----14
+ ! ! ! +-----------------------H005
+ ! ! +-30
+ ! ! ! +--------------------H032
+ ! ! +-24
+ +--1 ! +-----------------H016
+ ! +--7
+ ! ! +--------------H021
+ ! +-26
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+ ! +--8
+ ! ! +--------H009
+ ! +-16
+ ! ! +-----H012
+ ! +-29
+ ! ! +--H023
+ ! +--6
+ ! +--H026
+ !
+ ! +-----------------------------------------------------ANCE
+ ! !
+ +----------------------------------------------35 +--------------------------------------------------H006
+ ! !
+ +-10 +-----------------------------------------------H028
+ ! !
+ +-13 +--------------------------------------------H015
+ ! !
+ +--9 +-----------------------------------------H001
+ ! !
+ ! ! +--------------------------------------H020
+ +-11 !
+ ! ! +-----------------H018
+ ! ! !
+ ! ! +----------------34 +--------------H003
+ +--3 ! ! !
+ ! ! +-21 +-----------H011
+ ! ! ! !
+ ! ! +-31 +--H014
+ ! ! ! +----33
+ +--5 ! ! +--H017
+ ! +-15
+ ! ! +--H010
+ ! +----12
+ ! +--H027
+ !
+ ! +--------------H029
+ +-------------------20
+ ! +-----------H033
+ +-18
+ ! +--------H034
+ +--4
+ ! +-----H022
+ +-32
+ ! +--H013
+ +-23
+ +--H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 27 no ..... .....
+ 27 H030 yes ..... ...1.
+ 27 1 no ..... .....
+ 1 17 no ..... .....
+ 17 22 yes ...1. .....
+ 22 H035 yes ..... ....0
+ 22 H007 no ..... .....
+ 17 25 yes 0.... .....
+ 25 H025 no ..... .....
+ 25 2 yes ....1 .....
+ 2 H004 no ..... .....
+ 2 19 yes ..... 0....
+ 19 28 no ..... .....
+ 28 H031 yes ..... ..1..
+ 28 H008 no ..... .....
+ 19 14 no ..... .....
+ 14 H024 yes ..... ...1.
+ 14 30 no ..... .....
+ 30 H005 yes ..... ....0
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+ 24 H032 yes ..... .1...
+ 24 7 no ..... .....
+ 7 H016 no ..... .....
+ 7 26 yes ..1.. .....
+ 26 H021 yes ..... ..1..
+ 26 8 yes 1.... .....
+ 8 H002 no ..... .....
+ 8 16 yes ....0 .....
+ 16 H009 yes ..... ..1..
+ 16 29 no ..... .....
+ 29 H012 no ..... .....
+ 29 6 yes ..... 1....
+ 6 H023 no ..... .....
+ 6 H026 yes 0.... .....
+ 1 35 no ..... .....
+ 35 ANCE no ..... .....
+ 35 10 yes .0... .....
+ 10 H006 no ..... .....
+ 10 13 yes ..... .1.?.
+ 13 H028 maybe ..... ...1.
+ 13 9 yes ..... ..1..
+ 9 H015 maybe ..... ...0.
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+ 11 H001 no ..... .....
+ 11 3 no ..... .....
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+ 3 5 yes .1... .....
+ 5 34 no ..... .....
+ 34 H018 no ..... .....
+ 34 21 yes ...1. .....
+ 21 H003 yes ....1 .....
+ 21 31 no ..... .....
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+ 33 H014 yes 0.... .....
+ 33 H017 no ..... .....
+ 15 12 yes ..... ....0
+ 12 H010 maybe ..0.. .....
+ 12 H027 yes ..1.. 0....
+ 5 20 yes 0.... .....
+ 20 H029 no ..... .....
+ 20 18 yes ..... ....0
+ 18 H033 yes ...1. .....
+ 18 4 no ..... .....
+ 4 H034 no ..... .....
+ 4 32 yes ....1 .....
+ 32 H022 no ..... .....
+ 32 23 yes ..... 0....
+ 23 H013 no ..... .....
+ 23 H019 yes ..... ....1
+
+
+
+
+
+ +--------------------------------------------------------------------------------------------------------H030
+ !
+ ! +--H035
+ ! +----------------------------------------22
+ ! ! +--H007
+ ! +-------------------------------------------------------17
+ ! ! ! +--------------------------------------H025
+ ! ! +----25
+ ! ! ! +-----------------------------------H004
+ ! ! +--2
+-27 ! ! +--------------------------------H008
+ ! ! +-19
+ ! ! ! +-----------------------------H031
+ ! ! +-28
+ ! ! ! +--------------------------H024
+ ! ! +-14
+ ! ! ! +-----------------------H005
+ ! ! +-30
+ ! ! ! +--------------------H032
+ ! ! +-24
+ +--1 ! +-----------------H016
+ ! +--7
+ ! ! +--------------H021
+ ! +-26
+ ! ! +-----------H002
+ ! +--8
+ ! ! +--------H009
+ ! +-16
+ ! ! +-----H012
+ ! +-29
+ ! ! +--H023
+ ! +--6
+ ! +--H026
+ !
+ ! +-----------------------------------------------------ANCE
+ ! !
+ +----------------------------------------------35 +--------------------------------------------------H006
+ ! !
+ +-10 +-----------------------------------------------H028
+ ! !
+ +-13 +--------------------------------------------H015
+ ! !
+ +--9 +-----------------------------------------H001
+ ! !
+ ! ! +--------------------------------------H020
+ +-11 !
+ ! ! +-----------------H018
+ ! ! !
+ ! ! +----------------34 +--------------H003
+ +--3 ! ! !
+ ! ! +-21 +-----------H011
+ ! ! ! !
+ ! ! +-31 +--H014
+ ! ! ! +----33
+ +--5 ! ! +--H017
+ ! +-15
+ ! ! +--H010
+ ! +----12
+ ! +--H027
+ !
+ ! +--------------H029
+ +-------------------20
+ ! +-----------H033
+ +-18
+ ! +--------H034
+ +--4
+ ! +-----H022
+ +-32
+ ! +--H013
+ +-23
+ +--H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 27 no ..... .....
+ 27 H030 yes ..... ...1.
+ 27 1 no ..... .....
+ 1 17 no ..... .....
+ 17 22 yes ...1. .....
+ 22 H035 yes ..... ....0
+ 22 H007 no ..... .....
+ 17 25 yes 0.... .....
+ 25 H025 no ..... .....
+ 25 2 yes ....1 .....
+ 2 H004 no ..... .....
+ 2 19 yes ..... 0....
+ 19 H008 no ..... .....
+ 19 28 no ..... .....
+ 28 H031 yes ..... ..1..
+ 28 14 no ..... .....
+ 14 H024 yes ..... ...1.
+ 14 30 no ..... .....
+ 30 H005 yes ..... ....0
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+ 24 H032 yes ..... .1...
+ 24 7 no ..... .....
+ 7 H016 no ..... .....
+ 7 26 yes ..1.. .....
+ 26 H021 yes ..... ..1..
+ 26 8 yes 1.... .....
+ 8 H002 no ..... .....
+ 8 16 yes ....0 .....
+ 16 H009 yes ..... ..1..
+ 16 29 no ..... .....
+ 29 H012 no ..... .....
+ 29 6 yes ..... 1....
+ 6 H023 no ..... .....
+ 6 H026 yes 0.... .....
+ 1 35 no ..... .....
+ 35 ANCE no ..... .....
+ 35 10 yes .0... .....
+ 10 H006 no ..... .....
+ 10 13 yes ..... .1.?.
+ 13 H028 maybe ..... ...1.
+ 13 9 yes ..... ..1..
+ 9 H015 maybe ..... ...0.
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+ 11 H001 no ..... .....
+ 11 3 no ..... .....
+ 3 H020 yes ..... ....0
+ 3 5 yes .1... .....
+ 5 34 no ..... .....
+ 34 H018 no ..... .....
+ 34 21 yes ...1. .....
+ 21 H003 yes ....1 .....
+ 21 31 no ..... .....
+ 31 H011 no ..... .....
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+ 33 H014 yes 0.... .....
+ 33 H017 no ..... .....
+ 15 12 yes ..... ....0
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+ 12 H027 yes ..1.. 0....
+ 5 20 yes 0.... .....
+ 20 H029 no ..... .....
+ 20 18 yes ..... ....0
+ 18 H033 yes ...1. .....
+ 18 4 no ..... .....
+ 4 H034 no ..... .....
+ 4 32 yes ....1 .....
+ 32 H022 no ..... .....
+ 32 23 yes ..... 0....
+ 23 H013 no ..... .....
+ 23 H019 yes ..... ....1
+
+
+
+
+
+ +--------------------------------------------------------------------------------------------------------H030
+ !
+ ! +--H035
+ ! +----------------------------------------22
+ ! ! +--H007
+ ! +-------------------------------------------------------17
+ ! ! ! +--------------------------------------H025
+ ! ! ! !
+ ! ! +----25 +-----------------------------------H004
+ ! ! ! !
+-27 ! +--2 +--------------------------------H031
+ ! ! ! !
+ ! ! +-28 +-----------------------------H008
+ ! ! ! !
+ ! ! +-19 +--------------------------H024
+ ! ! ! !
+ ! ! +-14 +-----------------------H005
+ ! ! ! !
+ ! ! +-30 +--------------------H032
+ ! ! ! !
+ +--1 +-24 +-----------------H016
+ ! ! !
+ ! +--7 +--------------H021
+ ! ! !
+ ! +-26 +-----------H002
+ ! ! !
+ ! +--8 +--H012
+ ! ! +----29
+ ! ! ! +--H009
+ ! +-16
+ ! ! +--H023
+ ! +-----6
+ ! +--H026
+ !
+ ! +-----------------------------------------------------ANCE
+ ! !
+ +----------------------------------------------35 +--------------------------------------------------H006
+ ! !
+ +-10 +-----------------------------------------------H028
+ ! !
+ +-13 +--------------------------------------------H015
+ ! !
+ +--9 +-----------------------------------------H001
+ ! !
+ ! ! +--------------------------------------H020
+ +-11 !
+ ! ! +-----------------H018
+ ! ! !
+ ! ! +----------------34 +--------------H003
+ +--3 ! ! !
+ ! ! +-21 +-----------H011
+ ! ! ! !
+ ! ! +-31 +--H014
+ ! ! ! +----33
+ +--5 ! ! +--H017
+ ! +-15
+ ! ! +--H010
+ ! +----12
+ ! +--H027
+ !
+ ! +--------------H029
+ +-------------------20
+ ! +-----------H033
+ +-18
+ ! +--------H034
+ +--4
+ ! +-----H022
+ +-32
+ ! +--H013
+ +-23
+ +--H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 27 no ..... .....
+ 27 H030 yes ..... ...1.
+ 27 1 no ..... .....
+ 1 17 no ..... .....
+ 17 22 yes ...1. .....
+ 22 H035 yes ..... ....0
+ 22 H007 no ..... .....
+ 17 25 yes 0.... .....
+ 25 H025 no ..... .....
+ 25 2 yes ....1 .....
+ 2 H004 no ..... .....
+ 2 28 yes ..... 0....
+ 28 H031 yes ..... ..1..
+ 28 19 no ..... .....
+ 19 H008 no ..... .....
+ 19 14 no ..... .....
+ 14 H024 yes ..... ...1.
+ 14 30 no ..... .....
+ 30 H005 yes ..... ....0
+ 30 24 yes ...1. .....
+ 24 H032 yes ..... .1...
+ 24 7 no ..... .....
+ 7 H016 no ..... .....
+ 7 26 yes ..1.. .....
+ 26 H021 yes ..... ..1..
+ 26 8 yes 1.... .....
+ 8 H002 no ..... .....
+ 8 16 yes ....0 .....
+ 16 29 no ..... .....
+ 29 H012 no ..... .....
+ 29 H009 yes ..... ..1..
+ 16 6 yes ..... 1....
+ 6 H023 no ..... .....
+ 6 H026 yes 0.... .....
+ 1 35 no ..... .....
+ 35 ANCE no ..... .....
+ 35 10 yes .0... .....
+ 10 H006 no ..... .....
+ 10 13 yes ..... .1.?.
+ 13 H028 maybe ..... ...1.
+ 13 9 yes ..... ..1..
+ 9 H015 maybe ..... ...0.
+ 9 11 maybe ..... ...1.
+ 11 H001 no ..... .....
+ 11 3 no ..... .....
+ 3 H020 yes ..... ....0
+ 3 5 yes .1... .....
+ 5 34 no ..... .....
+ 34 H018 no ..... .....
+ 34 21 yes ...1. .....
+ 21 H003 yes ....1 .....
+ 21 31 no ..... .....
+ 31 H011 no ..... .....
+ 31 15 maybe ..?.. .....
+ 15 33 maybe ..1.. .....
+ 33 H014 yes 0.... .....
+ 33 H017 no ..... .....
+ 15 12 yes ..... ....0
+ 12 H010 maybe ..0.. .....
+ 12 H027 yes ..1.. 0....
+ 5 20 yes 0.... .....
+ 20 H029 no ..... .....
+ 20 18 yes ..... ....0
+ 18 H033 yes ...1. .....
+ 18 4 no ..... .....
+ 4 H034 no ..... .....
+ 4 32 yes ....1 .....
+ 32 H022 no ..... .....
+ 32 23 yes ..... 0....
+ 23 H013 no ..... .....
+ 23 H019 yes ..... ....1
+
+
+
+
+
+ +--------------------------------------------------------------------------------------------------------H030
+ !
+ ! +--H035
+ ! +----------------------------------------22
+ ! ! +--H007
+ ! +-------------------------------------------------------17
+ ! ! ! +--------------------------------------H025
+ ! ! +----25
+ ! ! ! +-----------------------------------H004
+ ! ! +--2
+-27 ! ! +--------------------------------H031
+ ! ! +-28
+ ! ! ! +-----------------------------H008
+ ! ! +-19
+ ! ! ! +--------------------------H024
+ ! ! +-14
+ ! ! ! +-----------------------H005
+ ! ! +-30
+ ! ! ! +--------------------H032
+ ! ! +-24
+ +--1 ! +-----------------H016
+ ! +--7
+ ! ! +--------------H021
+ ! +-26
+ ! ! +-----------H002
+ ! +--8
+ ! ! +--------H009
+ ! +-16
+ ! ! +-----H012
+ ! +-29
+ ! ! +--H023
+ ! +--6
+ ! +--H026
+ !
+ ! +-----------------------------------------------------ANCE
+ ! !
+ +----------------------------------------------35 +--------------------------------------------------H006
+ ! !
+ +-10 +-----------------------------------------------H028
+ ! !
+ +-13 +--------------------------------------------H015
+ ! !
+ +--9 +-----------------------------------------H001
+ ! !
+ ! ! +--------------------------------------H020
+ +-11 !
+ ! ! +-----------------H018
+ ! ! !
+ ! ! +----------------34 +--------------H003
+ +--3 ! ! !
+ ! ! +-21 +-----------H011
+ ! ! ! !
+ ! ! +-31 +--H014
+ ! ! ! +----33
+ +--5 ! ! +--H017
+ ! +-15
+ ! ! +--H010
+ ! +----12
+ ! +--H027
+ !
+ ! +--------------H029
+ +-------------------20
+ ! +-----------H033
+ +-18
+ ! +--------H034
+ +--4
+ ! +-----H022
+ +-32
+ ! +--H013
+ +-23
+ +--H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 27 no ..... .....
+ 27 H030 yes ..... ...1.
+ 27 1 no ..... .....
+ 1 17 no ..... .....
+ 17 22 yes ...1. .....
+ 22 H035 yes ..... ....0
+ 22 H007 no ..... .....
+ 17 25 yes 0.... .....
+ 25 H025 no ..... .....
+ 25 2 yes ....1 .....
+ 2 H004 no ..... .....
+ 2 28 yes ..... 0....
+ 28 H031 yes ..... ..1..
+ 28 19 no ..... .....
+ 19 H008 no ..... .....
+ 19 14 no ..... .....
+ 14 H024 yes ..... ...1.
+ 14 30 no ..... .....
+ 30 H005 yes ..... ....0
+ 30 24 yes ...1. .....
+ 24 H032 yes ..... .1...
+ 24 7 no ..... .....
+ 7 H016 no ..... .....
+ 7 26 yes ..1.. .....
+ 26 H021 yes ..... ..1..
+ 26 8 yes 1.... .....
+ 8 H002 no ..... .....
+ 8 16 yes ....0 .....
+ 16 H009 yes ..... ..1..
+ 16 29 no ..... .....
+ 29 H012 no ..... .....
+ 29 6 yes ..... 1....
+ 6 H023 no ..... .....
+ 6 H026 yes 0.... .....
+ 1 35 no ..... .....
+ 35 ANCE no ..... .....
+ 35 10 yes .0... .....
+ 10 H006 no ..... .....
+ 10 13 yes ..... .1.?.
+ 13 H028 maybe ..... ...1.
+ 13 9 yes ..... ..1..
+ 9 H015 maybe ..... ...0.
+ 9 11 maybe ..... ...1.
+ 11 H001 no ..... .....
+ 11 3 no ..... .....
+ 3 H020 yes ..... ....0
+ 3 5 yes .1... .....
+ 5 34 no ..... .....
+ 34 H018 no ..... .....
+ 34 21 yes ...1. .....
+ 21 H003 yes ....1 .....
+ 21 31 no ..... .....
+ 31 H011 no ..... .....
+ 31 15 maybe ..?.. .....
+ 15 33 maybe ..1.. .....
+ 33 H014 yes 0.... .....
+ 33 H017 no ..... .....
+ 15 12 yes ..... ....0
+ 12 H010 maybe ..0.. .....
+ 12 H027 yes ..1.. 0....
+ 5 20 yes 0.... .....
+ 20 H029 no ..... .....
+ 20 18 yes ..... ....0
+ 18 H033 yes ...1. .....
+ 18 4 no ..... .....
+ 4 H034 no ..... .....
+ 4 32 yes ....1 .....
+ 32 H022 no ..... .....
+ 32 23 yes ..... 0....
+ 23 H013 no ..... .....
+ 23 H019 yes ..... ....1
+
+
+
+
+
+ +--------------------------------------------------------------------------------------------------------H030
+ !
+ ! +--H035
+ ! +----------------------------------------22
+ ! ! +--H007
+ ! +-------------------------------------------------------17
+ ! ! ! +--------------------------------------H025
+ ! ! ! !
+ ! ! +----25 +-----------------------------------H004
+ ! ! ! !
+-27 ! +--2 +--H005
+ ! ! ! +----------------------------30
+ ! ! ! ! +--H031
+ ! ! +-28
+ ! ! ! +--------------------------H008
+ ! ! +----19
+ ! ! ! +-----------------------H024
+ ! ! +-14
+ ! ! ! +--------------------H032
+ ! ! +-24
+ +--1 ! +-----------------H016
+ ! +--7
+ ! ! +--------------H021
+ ! +-26
+ ! ! +-----------H002
+ ! +--8
+ ! ! +--------H012
+ ! +-29
+ ! ! +-----H009
+ ! +-16
+ ! ! +--H023
+ ! +--6
+ ! +--H026
+ !
+ ! +-----------------------------------------------------ANCE
+ ! !
+ +----------------------------------------------35 +--------------------------------------------------H006
+ ! !
+ +-10 +-----------------------------------------------H028
+ ! !
+ +-13 +--------------------------------------------H015
+ ! !
+ +--9 +-----------------------------------------H001
+ ! !
+ ! ! +--------------------------------------H020
+ +-11 !
+ ! ! +-----------------H018
+ ! ! !
+ ! ! +----------------34 +--------------H003
+ +--3 ! ! !
+ ! ! +-21 +-----------H011
+ ! ! ! !
+ ! ! +-31 +--H014
+ ! ! ! +----33
+ +--5 ! ! +--H017
+ ! +-15
+ ! ! +--H010
+ ! +----12
+ ! +--H027
+ !
+ ! +--------------H029
+ +-------------------20
+ ! +-----------H033
+ +-18
+ ! +--------H034
+ +--4
+ ! +-----H022
+ +-32
+ ! +--H013
+ +-23
+ +--H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 27 no ..... .....
+ 27 H030 yes ..... ...1.
+ 27 1 no ..... .....
+ 1 17 no ..... .....
+ 17 22 yes ...1. .....
+ 22 H035 yes ..... ....0
+ 22 H007 no ..... .....
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+ 14 H024 yes ..... ...1.
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+ 24 H032 yes ..... .1...
+ 24 7 no ..... .....
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+ 32 H022 no ..... .....
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+ 23 H013 no ..... .....
+ 23 H019 yes ..... ....1
+
+
+
+
+
+ +--------------------------------------------------------------------------------------------------------H030
+ !
+ ! +--H035
+ ! +----------------------------------------22
+ ! ! +--H007
+ ! +-------------------------------------------------------17
+ ! ! ! +--------------------------------------H025
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+ ! ! ! +-----------------------------------H004
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+ ! ! +-----H009
+ ! +-16
+ ! ! +--H023
+ ! +--6
+ ! +--H026
+ !
+ ! +-----------------------------------------------------ANCE
+ ! !
+ +----------------------------------------------35 +--------------------------------------------------H006
+ ! !
+ +-10 +-----------------------------------------------H028
+ ! !
+ +-13 +--------------------------------------------H015
+ ! !
+ +--9 +-----------------------------------------H001
+ ! !
+ ! ! +--------------------------------------H020
+ +-11 !
+ ! ! +-----------------H018
+ ! ! !
+ ! ! +----------------34 +--------------H003
+ +--3 ! ! !
+ ! ! +-21 +-----------H011
+ ! ! ! !
+ ! ! +-31 +--H014
+ ! ! ! +----33
+ +--5 ! ! +--H017
+ ! +-15
+ ! ! +--H010
+ ! +----12
+ ! +--H027
+ !
+ ! +--------------H029
+ +-------------------20
+ ! +-----------H033
+ +-18
+ ! +--------H034
+ +--4
+ ! +-----H022
+ +-32
+ ! +--H013
+ +-23
+ +--H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 27 no ..... .....
+ 27 H030 yes ..... ...1.
+ 27 1 no ..... .....
+ 1 17 no ..... .....
+ 17 22 yes ...1. .....
+ 22 H035 yes ..... ....0
+ 22 H007 no ..... .....
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+ 28 19 no ..... .....
+ 19 H008 no ..... .....
+ 19 14 no ..... .....
+ 14 H024 yes ..... ...1.
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+ 24 H032 yes ..... .1...
+ 24 7 no ..... .....
+ 7 H016 no ..... .....
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+ 26 H021 yes ..... ..1..
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+ 8 H002 no ..... .....
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+ 6 H026 yes 0.... .....
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+ 32 H022 no ..... .....
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+ 23 H013 no ..... .....
+ 23 H019 yes ..... ....1
+
+
+
+
+
+ +--------------------------------------------------------------------------------------------------------H030
+ !
+ ! +--H035
+ ! +----------------------------------------22
+ ! ! +--H007
+ ! +-------------------------------------------------------17
+ ! ! ! +--------------------------------------H025
+ ! ! +----25
+ ! ! ! +-----------------------------------H004
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+ ! ! +-30
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+ ! ! ! +-----------------------H024
+ ! ! +-14
+ ! ! ! +--------------------H032
+ ! ! +-24
+ +--1 ! +-----------------H016
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+ ! ! +--------------H021
+ ! +-26
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+ ! +--8
+ ! ! +--------H012
+ ! +-29
+ ! ! +-----H009
+ ! +-16
+ ! ! +--H023
+ ! +--6
+ ! +--H026
+ !
+ ! +-----------------------------------------------------ANCE
+ ! !
+ +----------------------------------------------35 +--------------------------------------------------H006
+ ! !
+ +-10 +-----------------------------------------------H028
+ ! !
+ +-13 +--------------------------------------------H015
+ ! !
+ +--9 +-----------------------------------------H001
+ ! !
+ ! ! +--------------------------------------H020
+ +-11 !
+ ! ! +-----------------H018
+ ! ! !
+ ! ! +----------------34 +--------------H003
+ +--3 ! ! !
+ ! ! +-21 +-----------H011
+ ! ! ! !
+ ! ! +-31 +--H014
+ ! ! ! +----33
+ +--5 ! ! +--H017
+ ! +-15
+ ! ! +--H010
+ ! +----12
+ ! +--H027
+ !
+ ! +--------------H029
+ +-------------------20
+ ! +-----------H033
+ +-18
+ ! +--------H034
+ +--4
+ ! +-----H022
+ +-32
+ ! +--H013
+ +-23
+ +--H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 27 no ..... .....
+ 27 H030 yes ..... ...1.
+ 27 1 no ..... .....
+ 1 17 no ..... .....
+ 17 22 yes ...1. .....
+ 22 H035 yes ..... ....0
+ 22 H007 no ..... .....
+ 17 25 yes 0.... .....
+ 25 H025 no ..... .....
+ 25 2 yes ....1 .....
+ 2 H004 no ..... .....
+ 2 30 yes ..... 0....
+ 30 H005 yes ..... ....0
+ 30 28 no ..... .....
+ 28 H031 yes ..... ..1..
+ 28 19 no ..... .....
+ 19 H008 no ..... .....
+ 19 14 no ..... .....
+ 14 H024 yes ..... ...1.
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+ 24 H032 yes ..... .1...
+ 24 7 no ..... .....
+ 7 H016 no ..... .....
+ 7 26 yes ..1.. .....
+ 26 H021 yes ..... ..1..
+ 26 8 yes 1.... .....
+ 8 H002 no ..... .....
+ 8 29 yes ....0 .....
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+ 16 6 yes ..... 1....
+ 6 H023 no ..... .....
+ 6 H026 yes 0.... .....
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+ 10 H006 no ..... .....
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+ 13 H028 maybe ..... ...1.
+ 13 9 yes ..... ..1..
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+ 3 5 yes .1... .....
+ 5 34 no ..... .....
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+ 21 H003 yes ....1 .....
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+ 33 H014 yes 0.... .....
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+ 5 20 yes 0.... .....
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+ 18 H033 yes ...1. .....
+ 18 4 no ..... .....
+ 4 H034 no ..... .....
+ 4 32 yes ....1 .....
+ 32 H022 no ..... .....
+ 32 23 yes ..... 0....
+ 23 H013 no ..... .....
+ 23 H019 yes ..... ....1
+
+
+
+
+
+ +--------------------------------------------------------------------------------------------------------H030
+ !
+ ! +--H035
+ ! +----------------------------------------22
+ ! ! +--H007
+ ! +-------------------------------------------------------17
+ ! ! ! +--------------------------------------H025
+ ! ! ! !
+ ! ! +----25 +-----------------------------------H004
+ ! ! ! !
+-27 ! +--2 +--------------------------------H008
+ ! ! ! !
+ ! ! +-19 +-----------------------------H024
+ ! ! ! !
+ ! ! +-14 +--H005
+ ! ! ! +----------------------30
+ ! ! ! ! +--H031
+ ! ! +-28
+ ! ! ! +--------------------H032
+ ! ! +----24
+ +--1 ! +-----------------H016
+ ! +--7
+ ! ! +--------------H021
+ ! +-26
+ ! ! +-----------H002
+ ! +--8
+ ! ! +--------H009
+ ! +-16
+ ! ! +-----H012
+ ! +-29
+ ! ! +--H023
+ ! +--6
+ ! +--H026
+ !
+ ! +-----------------------------------------------------ANCE
+ ! !
+ +----------------------------------------------35 +--------------------------------------------------H006
+ ! !
+ +-10 +-----------------------------------------------H028
+ ! !
+ +-13 +--------------------------------------------H015
+ ! !
+ +--9 +-----------------------------------------H001
+ ! !
+ ! ! +--------------------------------------H020
+ +-11 !
+ ! ! +-----------------H018
+ ! ! !
+ ! ! +----------------34 +--------------H003
+ +--3 ! ! !
+ ! ! +-21 +-----------H011
+ ! ! ! !
+ ! ! +-31 +--H014
+ ! ! ! +----33
+ +--5 ! ! +--H017
+ ! +-15
+ ! ! +--H010
+ ! +----12
+ ! +--H027
+ !
+ ! +--------------H029
+ +-------------------20
+ ! +-----------H033
+ +-18
+ ! +--------H034
+ +--4
+ ! +-----H022
+ +-32
+ ! +--H013
+ +-23
+ +--H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 27 no ..... .....
+ 27 H030 yes ..... ...1.
+ 27 1 no ..... .....
+ 1 17 no ..... .....
+ 17 22 yes ...1. .....
+ 22 H035 yes ..... ....0
+ 22 H007 no ..... .....
+ 17 25 yes 0.... .....
+ 25 H025 no ..... .....
+ 25 2 yes ....1 .....
+ 2 H004 no ..... .....
+ 2 19 yes ..... 0....
+ 19 H008 no ..... .....
+ 19 14 no ..... .....
+ 14 H024 yes ..... ...1.
+ 14 28 no ..... .....
+ 28 30 no ..... .....
+ 30 H005 yes ..... ....0
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+ 28 24 yes ...1. .....
+ 24 H032 yes ..... .1...
+ 24 7 no ..... .....
+ 7 H016 no ..... .....
+ 7 26 yes ..1.. .....
+ 26 H021 yes ..... ..1..
+ 26 8 yes 1.... .....
+ 8 H002 no ..... .....
+ 8 16 yes ....0 .....
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+ 16 29 no ..... .....
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+ 29 6 yes ..... 1....
+ 6 H023 no ..... .....
+ 6 H026 yes 0.... .....
+ 1 35 no ..... .....
+ 35 ANCE no ..... .....
+ 35 10 yes .0... .....
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+ 3 5 yes .1... .....
+ 5 34 no ..... .....
+ 34 H018 no ..... .....
+ 34 21 yes ...1. .....
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+ 21 31 no ..... .....
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+ 33 H014 yes 0.... .....
+ 33 H017 no ..... .....
+ 15 12 yes ..... ....0
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+ 5 20 yes 0.... .....
+ 20 H029 no ..... .....
+ 20 18 yes ..... ....0
+ 18 H033 yes ...1. .....
+ 18 4 no ..... .....
+ 4 H034 no ..... .....
+ 4 32 yes ....1 .....
+ 32 H022 no ..... .....
+ 32 23 yes ..... 0....
+ 23 H013 no ..... .....
+ 23 H019 yes ..... ....1
+
+
+
+
+
+ +--------------------------------------------------------------------------------------------------------H030
+ !
+ ! +--H035
+ ! +----------------------------------------22
+ ! ! +--H007
+ ! +-------------------------------------------------------17
+ ! ! ! +--------------------------------------H025
+ ! ! +----25
+ ! ! ! +-----------------------------------H004
+ ! ! +--2
+-27 ! ! +--------------------------------H008
+ ! ! +-19
+ ! ! ! +-----------------------------H024
+ ! ! +-14
+ ! ! ! +--------------------------H031
+ ! ! +-28
+ ! ! ! +-----------------------H005
+ ! ! +-30
+ ! ! ! +--------------------H032
+ ! ! +-24
+ +--1 ! +-----------------H016
+ ! +--7
+ ! ! +--------------H021
+ ! +-26
+ ! ! +-----------H002
+ ! +--8
+ ! ! +--------H009
+ ! +-16
+ ! ! +-----H012
+ ! +-29
+ ! ! +--H023
+ ! +--6
+ ! +--H026
+ !
+ ! +-----------------------------------------------------ANCE
+ ! !
+ +----------------------------------------------35 +--------------------------------------------------H006
+ ! !
+ +-10 +-----------------------------------------------H028
+ ! !
+ +-13 +--------------------------------------------H015
+ ! !
+ +--9 +-----------------------------------------H001
+ ! !
+ ! ! +--------------------------------------H020
+ +-11 !
+ ! ! +-----------------H018
+ ! ! !
+ ! ! +----------------34 +--------------H003
+ +--3 ! ! !
+ ! ! +-21 +-----------H011
+ ! ! ! !
+ ! ! +-31 +--H014
+ ! ! ! +----33
+ +--5 ! ! +--H017
+ ! +-15
+ ! ! +--H010
+ ! +----12
+ ! +--H027
+ !
+ ! +--------------H029
+ +-------------------20
+ ! +-----------H033
+ +-18
+ ! +--------H034
+ +--4
+ ! +-----H022
+ +-32
+ ! +--H013
+ +-23
+ +--H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 27 no ..... .....
+ 27 H030 yes ..... ...1.
+ 27 1 no ..... .....
+ 1 17 no ..... .....
+ 17 22 yes ...1. .....
+ 22 H035 yes ..... ....0
+ 22 H007 no ..... .....
+ 17 25 yes 0.... .....
+ 25 H025 no ..... .....
+ 25 2 yes ....1 .....
+ 2 H004 no ..... .....
+ 2 19 yes ..... 0....
+ 19 H008 no ..... .....
+ 19 14 no ..... .....
+ 14 H024 yes ..... ...1.
+ 14 28 no ..... .....
+ 28 H031 yes ..... ..1..
+ 28 30 no ..... .....
+ 30 H005 yes ..... ....0
+ 30 24 yes ...1. .....
+ 24 H032 yes ..... .1...
+ 24 7 no ..... .....
+ 7 H016 no ..... .....
+ 7 26 yes ..1.. .....
+ 26 H021 yes ..... ..1..
+ 26 8 yes 1.... .....
+ 8 H002 no ..... .....
+ 8 16 yes ....0 .....
+ 16 H009 yes ..... ..1..
+ 16 29 no ..... .....
+ 29 H012 no ..... .....
+ 29 6 yes ..... 1....
+ 6 H023 no ..... .....
+ 6 H026 yes 0.... .....
+ 1 35 no ..... .....
+ 35 ANCE no ..... .....
+ 35 10 yes .0... .....
+ 10 H006 no ..... .....
+ 10 13 yes ..... .1.?.
+ 13 H028 maybe ..... ...1.
+ 13 9 yes ..... ..1..
+ 9 H015 maybe ..... ...0.
+ 9 11 maybe ..... ...1.
+ 11 H001 no ..... .....
+ 11 3 no ..... .....
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+ 3 5 yes .1... .....
+ 5 34 no ..... .....
+ 34 H018 no ..... .....
+ 34 21 yes ...1. .....
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+ 21 31 no ..... .....
+ 31 H011 no ..... .....
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+ 33 H014 yes 0.... .....
+ 33 H017 no ..... .....
+ 15 12 yes ..... ....0
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+ 12 H027 yes ..1.. 0....
+ 5 20 yes 0.... .....
+ 20 H029 no ..... .....
+ 20 18 yes ..... ....0
+ 18 H033 yes ...1. .....
+ 18 4 no ..... .....
+ 4 H034 no ..... .....
+ 4 32 yes ....1 .....
+ 32 H022 no ..... .....
+ 32 23 yes ..... 0....
+ 23 H013 no ..... .....
+ 23 H019 yes ..... ....1
+
+
+
+
+
+ +--------------------------------------------------------------------------------------------------------H030
+ !
+ ! +--H035
+ ! +----------------------------------------22
+ ! ! +--H007
+ ! +-------------------------------------------------------17
+ ! ! ! +--------------------------------------H025
+ ! ! +----25
+ ! ! ! +-----------------------------------H004
+ ! ! +--2
+-27 ! ! +--------------------------------H008
+ ! ! +-19
+ ! ! ! +-----------------------------H024
+ ! ! +-14
+ ! ! ! +--------------------------H005
+ ! ! +-30
+ ! ! ! +-----------------------H031
+ ! ! +-28
+ ! ! ! +--------------------H032
+ ! ! +-24
+ +--1 ! +-----------------H016
+ ! +--7
+ ! ! +--------------H021
+ ! +-26
+ ! ! +-----------H002
+ ! +--8
+ ! ! +--------H009
+ ! +-16
+ ! ! +-----H012
+ ! +-29
+ ! ! +--H023
+ ! +--6
+ ! +--H026
+ !
+ ! +-----------------------------------------------------ANCE
+ ! !
+ +----------------------------------------------35 +--------------------------------------------------H006
+ ! !
+ +-10 +-----------------------------------------------H028
+ ! !
+ +-13 +--------------------------------------------H015
+ ! !
+ +--9 +-----------------------------------------H001
+ ! !
+ ! ! +--------------------------------------H020
+ +-11 !
+ ! ! +-----------------H018
+ ! ! !
+ ! ! +----------------34 +--------------H003
+ +--3 ! ! !
+ ! ! +-21 +-----------H011
+ ! ! ! !
+ ! ! +-31 +--H014
+ ! ! ! +----33
+ +--5 ! ! +--H017
+ ! +-15
+ ! ! +--H010
+ ! +----12
+ ! +--H027
+ !
+ ! +--------------H029
+ +-------------------20
+ ! +-----------H033
+ +-18
+ ! +--------H034
+ +--4
+ ! +-----H022
+ +-32
+ ! +--H013
+ +-23
+ +--H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 27 no ..... .....
+ 27 H030 yes ..... ...1.
+ 27 1 no ..... .....
+ 1 17 no ..... .....
+ 17 22 yes ...1. .....
+ 22 H035 yes ..... ....0
+ 22 H007 no ..... .....
+ 17 25 yes 0.... .....
+ 25 H025 no ..... .....
+ 25 2 yes ....1 .....
+ 2 H004 no ..... .....
+ 2 19 yes ..... 0....
+ 19 H008 no ..... .....
+ 19 14 no ..... .....
+ 14 H024 yes ..... ...1.
+ 14 30 no ..... .....
+ 30 H005 yes ..... ....0
+ 30 28 no ..... .....
+ 28 H031 yes ..... ..1..
+ 28 24 yes ...1. .....
+ 24 H032 yes ..... .1...
+ 24 7 no ..... .....
+ 7 H016 no ..... .....
+ 7 26 yes ..1.. .....
+ 26 H021 yes ..... ..1..
+ 26 8 yes 1.... .....
+ 8 H002 no ..... .....
+ 8 16 yes ....0 .....
+ 16 H009 yes ..... ..1..
+ 16 29 no ..... .....
+ 29 H012 no ..... .....
+ 29 6 yes ..... 1....
+ 6 H023 no ..... .....
+ 6 H026 yes 0.... .....
+ 1 35 no ..... .....
+ 35 ANCE no ..... .....
+ 35 10 yes .0... .....
+ 10 H006 no ..... .....
+ 10 13 yes ..... .1.?.
+ 13 H028 maybe ..... ...1.
+ 13 9 yes ..... ..1..
+ 9 H015 maybe ..... ...0.
+ 9 11 maybe ..... ...1.
+ 11 H001 no ..... .....
+ 11 3 no ..... .....
+ 3 H020 yes ..... ....0
+ 3 5 yes .1... .....
+ 5 34 no ..... .....
+ 34 H018 no ..... .....
+ 34 21 yes ...1. .....
+ 21 H003 yes ....1 .....
+ 21 31 no ..... .....
+ 31 H011 no ..... .....
+ 31 15 maybe ..?.. .....
+ 15 33 maybe ..1.. .....
+ 33 H014 yes 0.... .....
+ 33 H017 no ..... .....
+ 15 12 yes ..... ....0
+ 12 H010 maybe ..0.. .....
+ 12 H027 yes ..1.. 0....
+ 5 20 yes 0.... .....
+ 20 H029 no ..... .....
+ 20 18 yes ..... ....0
+ 18 H033 yes ...1. .....
+ 18 4 no ..... .....
+ 4 H034 no ..... .....
+ 4 32 yes ....1 .....
+ 32 H022 no ..... .....
+ 32 23 yes ..... 0....
+ 23 H013 no ..... .....
+ 23 H019 yes ..... ....1
+
+
+
+
+
+ +--H035
+ +----------------------------------------22
+ ! +--H007
+ +----------------------------------------------------------17
+ ! ! +--------------------------------------H025
+ ! ! !
+ ! +----25 +-----------------------------------H004
+ ! ! !
+ ! +--2 +--------------------------------H008
+ ! ! !
+ ! +-19 +-----------------------------H024
+ ! ! !
+ ! +-14 +--H005
+ ! ! +----------------------30
+ ! ! ! +--H031
+ ! +-28
+ ! ! +--------------------H032
+ ! +----24
+ ! ! +-----------------H016
+--1 +--7
+ ! ! +--------------H021
+ ! +-26
+ ! ! +-----------H002
+ ! +--8
+ ! ! +--------H009
+ ! +-16
+ ! ! +-----H012
+ ! +-29
+ ! ! +--H023
+ ! +--6
+ ! +--H026
+ !
+ ! +--ANCE
+ ! +----------------------------------------------------35
+ ! ! +--H030
+ +----------------------------------------------27
+ ! +--------------------------------------------------H006
+ ! !
+ +----10 +-----------------------------------------------H028
+ ! !
+ +-13 +--------------------------------------------H015
+ ! !
+ +--9 +-----------------------------------------H001
+ ! !
+ ! ! +--------------------------------------H020
+ +-11 !
+ ! ! +-----------------H018
+ ! ! !
+ ! ! +----------------34 +--------------H003
+ +--3 ! ! !
+ ! ! +-21 +-----------H011
+ ! ! ! !
+ ! ! +-31 +--H014
+ ! ! ! +----33
+ +--5 ! ! +--H017
+ ! +-15
+ ! ! +--H010
+ ! +----12
+ ! +--H027
+ !
+ ! +--------------H029
+ +-------------------20
+ ! +-----------H033
+ +-18
+ ! +--------H034
+ +--4
+ ! +-----H022
+ +-32
+ ! +--H013
+ +-23
+ +--H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 1 no ..... .....
+ 1 17 no ..... .....
+ 17 22 yes ...1. .....
+ 22 H035 yes ..... ....0
+ 22 H007 no ..... .....
+ 17 25 yes 0.... .....
+ 25 H025 no ..... .....
+ 25 2 yes ....1 .....
+ 2 H004 no ..... .....
+ 2 19 yes ..... 0....
+ 19 H008 no ..... .....
+ 19 14 no ..... .....
+ 14 H024 yes ..... ...1.
+ 14 28 no ..... .....
+ 28 30 no ..... .....
+ 30 H005 yes ..... ....0
+ 30 H031 yes ..... ..1..
+ 28 24 yes ...1. .....
+ 24 H032 yes ..... .1...
+ 24 7 no ..... .....
+ 7 H016 no ..... .....
+ 7 26 yes ..1.. .....
+ 26 H021 yes ..... ..1..
+ 26 8 yes 1.... .....
+ 8 H002 no ..... .....
+ 8 16 yes ....0 .....
+ 16 H009 yes ..... ..1..
+ 16 29 no ..... .....
+ 29 H012 no ..... .....
+ 29 6 yes ..... 1....
+ 6 H023 no ..... .....
+ 6 H026 yes 0.... .....
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+ 27 35 no ..... .....
+ 35 ANCE no ..... .....
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+ 10 H006 no ..... .....
+ 10 13 yes ..... .1.?.
+ 13 H028 maybe ..... ...1.
+ 13 9 yes ..... ..1..
+ 9 H015 maybe ..... ...0.
+ 9 11 maybe ..... ...1.
+ 11 H001 no ..... .....
+ 11 3 no ..... .....
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+ 5 34 no ..... .....
+ 34 H018 no ..... .....
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+ 21 H003 yes ....1 .....
+ 21 31 no ..... .....
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+ 18 4 no ..... .....
+ 4 H034 no ..... .....
+ 4 32 yes ....1 .....
+ 32 H022 no ..... .....
+ 32 23 yes ..... 0....
+ 23 H013 no ..... .....
+ 23 H019 yes ..... ....1
+
+
+
+
+
+ +--H035
+ +----------------------------------------22
+ ! +--H007
+ +----------------------------------------------------------17
+ ! ! +--------------------------------------H025
+ ! ! !
+ ! +----25 +-----------------------------------H004
+ ! ! !
+ ! +--2 +--------------------------------H008
+ ! ! !
+ ! +-19 +-----------------------------H024
+ ! ! !
+ ! +-14 +--H005
+ ! ! +----------------------30
+ ! ! ! +--H031
+ ! +-28
+ ! ! +--------------------H032
+ ! +----24
+--1 ! +-----------------H016
+ ! +--7
+ ! ! +--------------H021
+ ! +-26
+ ! ! +-----------H002
+ ! +--8
+ ! ! +--------H009
+ ! +-16
+ ! ! +-----H012
+ ! +-29
+ ! ! +--H023
+ ! +--6
+ ! +--H026
+ !
+ ! +--------------------------------------------------------H030
+ ! !
+ +----------------------------------------------27 +-----------------------------------------------------ANCE
+ ! !
+ +-35 +--------------------------------------------------H006
+ ! !
+ +-10 +-----------------------------------------------H028
+ ! !
+ +-13 +--------------------------------------------H015
+ ! !
+ +--9 +-----------------------------------------H001
+ ! !
+ ! ! +--------------------------------------H020
+ +-11 !
+ ! ! +-----------------H018
+ ! ! !
+ ! ! +----------------34 +--------------H003
+ +--3 ! ! !
+ ! ! +-21 +-----------H011
+ ! ! ! !
+ ! ! +-31 +--H014
+ ! ! ! +----33
+ +--5 ! ! +--H017
+ ! +-15
+ ! ! +--H010
+ ! +----12
+ ! +--H027
+ !
+ ! +--------------H029
+ +-------------------20
+ ! +-----------H033
+ +-18
+ ! +--------H034
+ +--4
+ ! +-----H022
+ +-32
+ ! +--H013
+ +-23
+ +--H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 1 no ..... .....
+ 1 17 no ..... .....
+ 17 22 yes ...1. .....
+ 22 H035 yes ..... ....0
+ 22 H007 no ..... .....
+ 17 25 yes 0.... .....
+ 25 H025 no ..... .....
+ 25 2 yes ....1 .....
+ 2 H004 no ..... .....
+ 2 19 yes ..... 0....
+ 19 H008 no ..... .....
+ 19 14 no ..... .....
+ 14 H024 yes ..... ...1.
+ 14 28 no ..... .....
+ 28 30 no ..... .....
+ 30 H005 yes ..... ....0
+ 30 H031 yes ..... ..1..
+ 28 24 yes ...1. .....
+ 24 H032 yes ..... .1...
+ 24 7 no ..... .....
+ 7 H016 no ..... .....
+ 7 26 yes ..1.. .....
+ 26 H021 yes ..... ..1..
+ 26 8 yes 1.... .....
+ 8 H002 no ..... .....
+ 8 16 yes ....0 .....
+ 16 H009 yes ..... ..1..
+ 16 29 no ..... .....
+ 29 H012 no ..... .....
+ 29 6 yes ..... 1....
+ 6 H023 no ..... .....
+ 6 H026 yes 0.... .....
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+ 27 35 no ..... .....
+ 35 ANCE no ..... .....
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+ 10 H006 no ..... .....
+ 10 13 yes ..... .1.?.
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+ 13 9 yes ..... ..1..
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+ 11 H001 no ..... .....
+ 11 3 no ..... .....
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+ 5 34 no ..... .....
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+ 21 31 no ..... .....
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+ 5 20 yes 0.... .....
+ 20 H029 no ..... .....
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+ 18 H033 yes ...1. .....
+ 18 4 no ..... .....
+ 4 H034 no ..... .....
+ 4 32 yes ....1 .....
+ 32 H022 no ..... .....
+ 32 23 yes ..... 0....
+ 23 H013 no ..... .....
+ 23 H019 yes ..... ....1
+
+
+
+
+
+ +--H035
+ +----------------------------------------22
+ ! +--H007
+ +----------------------------------------------------------17
+ ! ! +--------------------------------------H025
+ ! ! !
+ ! +----25 +-----------------------------------H004
+ ! ! !
+ ! +--2 +--------------------------------H008
+ ! ! !
+ ! +-19 +-----------------------------H024
+ ! ! !
+ ! +-14 +--H005
+ ! ! +----------------------30
+ ! ! ! +--H031
+ ! +-28
+ ! ! +--------------------H032
+ ! +----24
+--1 ! +-----------------H016
+ ! +--7
+ ! ! +--------------H021
+ ! +-26
+ ! ! +-----------H002
+ ! +--8
+ ! ! +--------H009
+ ! +-16
+ ! ! +-----H012
+ ! +-29
+ ! ! +--H023
+ ! +--6
+ ! +--H026
+ !
+ ! +--------------------------------------------------------ANCE
+ ! !
+ +----------------------------------------------35 +-----------------------------------------------------H030
+ ! !
+ +-27 +--------------------------------------------------H006
+ ! !
+ +-10 +-----------------------------------------------H028
+ ! !
+ +-13 +--------------------------------------------H015
+ ! !
+ +--9 +-----------------------------------------H001
+ ! !
+ ! ! +--------------------------------------H020
+ +-11 !
+ ! ! +-----------------H018
+ ! ! !
+ ! ! +----------------34 +--------------H003
+ +--3 ! ! !
+ ! ! +-21 +-----------H011
+ ! ! ! !
+ ! ! +-31 +--H014
+ ! ! ! +----33
+ +--5 ! ! +--H017
+ ! +-15
+ ! ! +--H010
+ ! +----12
+ ! +--H027
+ !
+ ! +--------------H029
+ +-------------------20
+ ! +-----------H033
+ +-18
+ ! +--------H034
+ +--4
+ ! +-----H022
+ +-32
+ ! +--H013
+ +-23
+ +--H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 1 no ..... .....
+ 1 17 no ..... .....
+ 17 22 yes ...1. .....
+ 22 H035 yes ..... ....0
+ 22 H007 no ..... .....
+ 17 25 yes 0.... .....
+ 25 H025 no ..... .....
+ 25 2 yes ....1 .....
+ 2 H004 no ..... .....
+ 2 19 yes ..... 0....
+ 19 H008 no ..... .....
+ 19 14 no ..... .....
+ 14 H024 yes ..... ...1.
+ 14 28 no ..... .....
+ 28 30 no ..... .....
+ 30 H005 yes ..... ....0
+ 30 H031 yes ..... ..1..
+ 28 24 yes ...1. .....
+ 24 H032 yes ..... .1...
+ 24 7 no ..... .....
+ 7 H016 no ..... .....
+ 7 26 yes ..1.. .....
+ 26 H021 yes ..... ..1..
+ 26 8 yes 1.... .....
+ 8 H002 no ..... .....
+ 8 16 yes ....0 .....
+ 16 H009 yes ..... ..1..
+ 16 29 no ..... .....
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+ 29 6 yes ..... 1....
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+ 6 H026 yes 0.... .....
+ 1 35 no ..... .....
+ 35 ANCE no ..... .....
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+ 27 10 yes .0... .....
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+ 10 13 yes ..... .1...
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+ 13 9 yes ..... ..1..
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+ 11 H001 no ..... .....
+ 11 3 no ..... .....
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+ 5 34 no ..... .....
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+ 21 H003 yes ....1 .....
+ 21 31 no ..... .....
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+ 33 H017 no ..... .....
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+ 5 20 yes 0.... .....
+ 20 H029 no ..... .....
+ 20 18 yes ..... ....0
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+ 18 4 no ..... .....
+ 4 H034 no ..... .....
+ 4 32 yes ....1 .....
+ 32 H022 no ..... .....
+ 32 23 yes ..... 0....
+ 23 H013 no ..... .....
+ 23 H019 yes ..... ....1
+
+
+
+
+
+ +--H035
+ +----------------------------------------22
+ ! +--H007
+ +----------------------------------------------------------17
+ ! ! +--------------------------------------H025
+ ! ! !
+ ! +----25 +-----------------------------------H004
+ ! ! !
+ ! +--2 +--------------------------------H008
+ ! ! !
+ ! +-19 +-----------------------------H024
+ ! ! !
+ ! +-14 +--H005
+ ! ! +----------------------30
+ ! ! ! +--H031
+ ! +-28
+ ! ! +--------------------H032
+ ! +----24
+--1 ! +-----------------H016
+ ! +--7
+ ! ! +--------------H021
+ ! +-26
+ ! ! +-----------H002
+ ! +--8
+ ! ! +--------H009
+ ! +-16
+ ! ! +-----H012
+ ! +-29
+ ! ! +--H023
+ ! +--6
+ ! +--H026
+ !
+ ! +--------------------------------------------------------ANCE
+ ! !
+ +----------------------------------------------35 +-----------------------------------------------------H006
+ ! !
+ +-10 +--------------------------------------------------H030
+ ! !
+ +-27 +-----------------------------------------------H028
+ ! !
+ +-13 +--------------------------------------------H015
+ ! !
+ +--9 +-----------------------------------------H001
+ ! !
+ ! ! +--------------------------------------H020
+ +-11 !
+ ! ! +-----------------H018
+ ! ! !
+ ! ! +----------------34 +--------------H003
+ +--3 ! ! !
+ ! ! +-21 +-----------H011
+ ! ! ! !
+ ! ! +-31 +--H014
+ ! ! ! +----33
+ +--5 ! ! +--H017
+ ! +-15
+ ! ! +--H010
+ ! +----12
+ ! +--H027
+ !
+ ! +--------------H029
+ +-------------------20
+ ! +-----------H033
+ +-18
+ ! +--------H034
+ +--4
+ ! +-----H022
+ +-32
+ ! +--H013
+ +-23
+ +--H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 1 no ..... .....
+ 1 17 no ..... .....
+ 17 22 yes ...1. .....
+ 22 H035 yes ..... ....0
+ 22 H007 no ..... .....
+ 17 25 yes 0.... .....
+ 25 H025 no ..... .....
+ 25 2 yes ....1 .....
+ 2 H004 no ..... .....
+ 2 19 yes ..... 0....
+ 19 H008 no ..... .....
+ 19 14 no ..... .....
+ 14 H024 yes ..... ...1.
+ 14 28 no ..... .....
+ 28 30 no ..... .....
+ 30 H005 yes ..... ....0
+ 30 H031 yes ..... ..1..
+ 28 24 yes ...1. .....
+ 24 H032 yes ..... .1...
+ 24 7 no ..... .....
+ 7 H016 no ..... .....
+ 7 26 yes ..1.. .....
+ 26 H021 yes ..... ..1..
+ 26 8 yes 1.... .....
+ 8 H002 no ..... .....
+ 8 16 yes ....0 .....
+ 16 H009 yes ..... ..1..
+ 16 29 no ..... .....
+ 29 H012 no ..... .....
+ 29 6 yes ..... 1....
+ 6 H023 no ..... .....
+ 6 H026 yes 0.... .....
+ 1 35 no ..... .....
+ 35 ANCE no ..... .....
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+ 10 27 yes ..... ...1.
+ 27 H030 maybe .1... .....
+ 27 13 yes .0... .1...
+ 13 H028 no ..... .....
+ 13 9 yes ..... ..1..
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+ 9 11 no ..... .....
+ 11 H001 no ..... .....
+ 11 3 no ..... .....
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+ 3 5 yes .1... .....
+ 5 34 no ..... .....
+ 34 H018 no ..... .....
+ 34 21 yes ...1. .....
+ 21 H003 yes ....1 .....
+ 21 31 no ..... .....
+ 31 H011 no ..... .....
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+ 33 H014 yes 0.... .....
+ 33 H017 no ..... .....
+ 15 12 yes ..... ....0
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+ 5 20 yes 0.... .....
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+ 18 4 no ..... .....
+ 4 H034 no ..... .....
+ 4 32 yes ....1 .....
+ 32 H022 no ..... .....
+ 32 23 yes ..... 0....
+ 23 H013 no ..... .....
+ 23 H019 yes ..... ....1
+
+
+
+
+
+ +-----------------------------------------------H030
+ !
+ +-------------------------------------------------------27 +--H035
+ ! ! +----------------------------------------22
+ ! ! ! +--H007
+ ! +-17
+ ! ! +--------------------------------------H025
+ ! ! !
+ ! +----25 +-----------------------------------H004
+ ! ! !
+ ! +--2 +--------------------------------H008
+ ! ! !
+ ! +-19 +-----------------------------H024
+ ! ! !
+ ! +-14 +--H005
+ ! ! +----------------------30
+ ! ! ! +--H031
+ ! +-28
+ ! ! +--------------------H032
+--1 +----24
+ ! ! +-----------------H016
+ ! +--7
+ ! ! +--------------H021
+ ! +-26
+ ! ! +-----------H002
+ ! +--8
+ ! ! +--------H009
+ ! +-16
+ ! ! +-----H012
+ ! +-29
+ ! ! +--H023
+ ! +--6
+ ! +--H026
+ !
+ ! +-----------------------------------------------------ANCE
+ ! !
+ +-------------------------------------------------35 +--------------------------------------------------H006
+ ! !
+ +-10 +-----------------------------------------------H028
+ ! !
+ +-13 +--------------------------------------------H015
+ ! !
+ +--9 +-----------------------------------------H001
+ ! !
+ ! ! +--------------------------------------H020
+ +-11 !
+ ! ! +-----------------H018
+ ! ! !
+ ! ! +----------------34 +--------------H003
+ +--3 ! ! !
+ ! ! +-21 +-----------H011
+ ! ! ! !
+ ! ! +-31 +--H014
+ ! ! ! +----33
+ +--5 ! ! +--H017
+ ! +-15
+ ! ! +--H010
+ ! +----12
+ ! +--H027
+ !
+ ! +--------------H029
+ +-------------------20
+ ! +-----------H033
+ +-18
+ ! +--------H034
+ +--4
+ ! +-----H022
+ +-32
+ ! +--H013
+ +-23
+ +--H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 1 no ..... .....
+ 1 27 no ..... .....
+ 27 H030 yes ..... ...1.
+ 27 17 no ..... .....
+ 17 22 yes ...1. .....
+ 22 H035 yes ..... ....0
+ 22 H007 no ..... .....
+ 17 25 yes 0.... .....
+ 25 H025 no ..... .....
+ 25 2 yes ....1 .....
+ 2 H004 no ..... .....
+ 2 19 yes ..... 0....
+ 19 H008 no ..... .....
+ 19 14 no ..... .....
+ 14 H024 yes ..... ...1.
+ 14 28 no ..... .....
+ 28 30 no ..... .....
+ 30 H005 yes ..... ....0
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+ 28 24 yes ...1. .....
+ 24 H032 yes ..... .1...
+ 24 7 no ..... .....
+ 7 H016 no ..... .....
+ 7 26 yes ..1.. .....
+ 26 H021 yes ..... ..1..
+ 26 8 yes 1.... .....
+ 8 H002 no ..... .....
+ 8 16 yes ....0 .....
+ 16 H009 yes ..... ..1..
+ 16 29 no ..... .....
+ 29 H012 no ..... .....
+ 29 6 yes ..... 1....
+ 6 H023 no ..... .....
+ 6 H026 yes 0.... .....
+ 1 35 no ..... .....
+ 35 ANCE no ..... .....
+ 35 10 yes .0... .....
+ 10 H006 no ..... .....
+ 10 13 yes ..... .1.?.
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+ 13 9 yes ..... ..1..
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+ 11 H001 no ..... .....
+ 11 3 no ..... .....
+ 3 H020 yes ..... ....0
+ 3 5 yes .1... .....
+ 5 34 no ..... .....
+ 34 H018 no ..... .....
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+ 21 H003 yes ....1 .....
+ 21 31 no ..... .....
+ 31 H011 no ..... .....
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+ 15 33 maybe ..1.. .....
+ 33 H014 yes 0.... .....
+ 33 H017 no ..... .....
+ 15 12 yes ..... ....0
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+ 12 H027 yes ..1.. 0....
+ 5 20 yes 0.... .....
+ 20 H029 no ..... .....
+ 20 18 yes ..... ....0
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+ 18 4 no ..... .....
+ 4 H034 no ..... .....
+ 4 32 yes ....1 .....
+ 32 H022 no ..... .....
+ 32 23 yes ..... 0....
+ 23 H013 no ..... .....
+ 23 H019 yes ..... ....1
+
+
+
+
+
+ +-----H030
+ +----------------------------------------27
+ ! ! +--H035
+ ! +-22
+ +-------------------------------------------------------17 +--H007
+ ! !
+ ! ! +--------------------------------------H025
+ ! ! !
+ ! +-------25 +-----------------------------------H004
+ ! ! !
+ ! +--2 +--------------------------------H008
+ ! ! !
+ ! +-19 +-----------------------------H024
+ ! ! !
+ ! +-14 +--H005
+ ! ! +----------------------30
+ ! ! ! +--H031
+ ! +-28
+ ! ! +--------------------H032
+ ! +----24
+--1 ! +-----------------H016
+ ! +--7
+ ! ! +--------------H021
+ ! +-26
+ ! ! +-----------H002
+ ! +--8
+ ! ! +--------H009
+ ! +-16
+ ! ! +-----H012
+ ! +-29
+ ! ! +--H023
+ ! +--6
+ ! +--H026
+ !
+ ! +-----------------------------------------------------ANCE
+ ! !
+ +-------------------------------------------------35 +--------------------------------------------------H006
+ ! !
+ +-10 +-----------------------------------------------H028
+ ! !
+ +-13 +--------------------------------------------H015
+ ! !
+ +--9 +-----------------------------------------H001
+ ! !
+ ! ! +--------------------------------------H020
+ +-11 !
+ ! ! +-----------------H018
+ ! ! !
+ ! ! +----------------34 +--------------H003
+ +--3 ! ! !
+ ! ! +-21 +-----------H011
+ ! ! ! !
+ ! ! +-31 +--H014
+ ! ! ! +----33
+ +--5 ! ! +--H017
+ ! +-15
+ ! ! +--H010
+ ! +----12
+ ! +--H027
+ !
+ ! +--------------H029
+ +-------------------20
+ ! +-----------H033
+ +-18
+ ! +--------H034
+ +--4
+ ! +-----H022
+ +-32
+ ! +--H013
+ +-23
+ +--H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 1 no ..... .....
+ 1 17 no ..... .....
+ 17 27 no ..... .....
+ 27 H030 yes ..... ...1.
+ 27 22 yes ...1. .....
+ 22 H035 yes ..... ....0
+ 22 H007 no ..... .....
+ 17 25 yes 0.... .....
+ 25 H025 no ..... .....
+ 25 2 yes ....1 .....
+ 2 H004 no ..... .....
+ 2 19 yes ..... 0....
+ 19 H008 no ..... .....
+ 19 14 no ..... .....
+ 14 H024 yes ..... ...1.
+ 14 28 no ..... .....
+ 28 30 no ..... .....
+ 30 H005 yes ..... ....0
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+ 28 24 yes ...1. .....
+ 24 H032 yes ..... .1...
+ 24 7 no ..... .....
+ 7 H016 no ..... .....
+ 7 26 yes ..1.. .....
+ 26 H021 yes ..... ..1..
+ 26 8 yes 1.... .....
+ 8 H002 no ..... .....
+ 8 16 yes ....0 .....
+ 16 H009 yes ..... ..1..
+ 16 29 no ..... .....
+ 29 H012 no ..... .....
+ 29 6 yes ..... 1....
+ 6 H023 no ..... .....
+ 6 H026 yes 0.... .....
+ 1 35 no ..... .....
+ 35 ANCE no ..... .....
+ 35 10 yes .0... .....
+ 10 H006 no ..... .....
+ 10 13 yes ..... .1.?.
+ 13 H028 maybe ..... ...1.
+ 13 9 yes ..... ..1..
+ 9 H015 maybe ..... ...0.
+ 9 11 maybe ..... ...1.
+ 11 H001 no ..... .....
+ 11 3 no ..... .....
+ 3 H020 yes ..... ....0
+ 3 5 yes .1... .....
+ 5 34 no ..... .....
+ 34 H018 no ..... .....
+ 34 21 yes ...1. .....
+ 21 H003 yes ....1 .....
+ 21 31 no ..... .....
+ 31 H011 no ..... .....
+ 31 15 maybe ..?.. .....
+ 15 33 maybe ..1.. .....
+ 33 H014 yes 0.... .....
+ 33 H017 no ..... .....
+ 15 12 yes ..... ....0
+ 12 H010 maybe ..0.. .....
+ 12 H027 yes ..1.. 0....
+ 5 20 yes 0.... .....
+ 20 H029 no ..... .....
+ 20 18 yes ..... ....0
+ 18 H033 yes ...1. .....
+ 18 4 no ..... .....
+ 4 H034 no ..... .....
+ 4 32 yes ....1 .....
+ 32 H022 no ..... .....
+ 32 23 yes ..... 0....
+ 23 H013 no ..... .....
+ 23 H019 yes ..... ....1
+
+
+
+
+
+ +--H035
+ +-------------------------------------------22
+ ! +--H007
+ +-------------------------------------------------------17
+ ! ! +-----------------------------------------H030
+ ! ! !
+ ! +----27 +--------------------------------------H025
+ ! ! !
+ ! +-25 +-----------------------------------H004
+ ! ! !
+ ! +--2 +--------------------------------H008
+ ! ! !
+ ! +-19 +-----------------------------H024
+ ! ! !
+ ! +-14 +--H005
+ ! ! +----------------------30
+ ! ! ! +--H031
+ ! +-28
+ ! ! +--------------------H032
+--1 +----24
+ ! ! +-----------------H016
+ ! +--7
+ ! ! +--------------H021
+ ! +-26
+ ! ! +-----------H002
+ ! +--8
+ ! ! +--------H009
+ ! +-16
+ ! ! +-----H012
+ ! +-29
+ ! ! +--H023
+ ! +--6
+ ! +--H026
+ !
+ ! +-----------------------------------------------------ANCE
+ ! !
+ +-------------------------------------------------35 +--------------------------------------------------H006
+ ! !
+ +-10 +-----------------------------------------------H028
+ ! !
+ +-13 +--------------------------------------------H015
+ ! !
+ +--9 +-----------------------------------------H001
+ ! !
+ ! ! +--------------------------------------H020
+ +-11 !
+ ! ! +-----------------H018
+ ! ! !
+ ! ! +----------------34 +--------------H003
+ +--3 ! ! !
+ ! ! +-21 +-----------H011
+ ! ! ! !
+ ! ! +-31 +--H014
+ ! ! ! +----33
+ +--5 ! ! +--H017
+ ! +-15
+ ! ! +--H010
+ ! +----12
+ ! +--H027
+ !
+ ! +--------------H029
+ +-------------------20
+ ! +-----------H033
+ +-18
+ ! +--------H034
+ +--4
+ ! +-----H022
+ +-32
+ ! +--H013
+ +-23
+ +--H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 1 no ..... .....
+ 1 17 no ..... .....
+ 17 22 yes ...1. .....
+ 22 H035 yes ..... ....0
+ 22 H007 no ..... .....
+ 17 27 no ..... .....
+ 27 H030 yes ..... ...1.
+ 27 25 yes 0.... .....
+ 25 H025 no ..... .....
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+ 2 H004 no ..... .....
+ 2 19 yes ..... 0....
+ 19 H008 no ..... .....
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+ 14 H024 yes ..... ...1.
+ 14 28 no ..... .....
+ 28 30 no ..... .....
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+ 24 H032 yes ..... .1...
+ 24 7 no ..... .....
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+ 8 H002 no ..... .....
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+ 5 34 no ..... .....
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+ 32 H022 no ..... .....
+ 32 23 yes ..... 0....
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+ 23 H019 yes ..... ....1
+
+
+
+
+
+ +--H035
+ +----------------------------------------22
+ ! +--H007
+ +----------------------------------------------------------17
+ ! ! +--------------------------------------H025
+ ! ! !
+ ! +----25 +-----------------------------------H004
+ ! ! !
+ ! +--2 +--------------------------------H008
+ ! ! !
+ ! +-19 +-----------------------------H024
+ ! ! !
+ ! +-14 +--H005
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+ ! ! ! +--H031
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+ ! ! +--------------------H016
+ ! +-----7
+ ! ! +-----------------H032
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+ ! +-16
+ ! ! +-----H012
+ ! +-29
+ ! ! +--H023
+ ! +--6
+ ! +--H026
+ !
+ ! +--ANCE
+ ! +----------------------------------------------------35
+ ! ! +--H030
+ +----------------------------------------------27
+ ! +--------------------------------------------------H006
+ ! !
+ +----10 +-----------------------------------------------H028
+ ! !
+ +-13 +--------------------------------------------H015
+ ! !
+ +--9 +-----------------------------------------H001
+ ! !
+ ! ! +--------------------------------------H020
+ +-11 !
+ ! ! +-----------------H018
+ ! ! !
+ ! ! ! +--H011
+ +--3 +----------------34 +----------31
+ ! ! ! ! +--H003
+ ! ! ! !
+ ! ! +-21 +--H014
+ ! ! ! +----33
+ ! ! ! ! +--H017
+ +--5 +----15
+ ! ! +--H010
+ ! +----12
+ ! +--H027
+ !
+ ! +--------------H029
+ +-------------------20
+ ! +-----------H033
+ +-18
+ ! +--------H034
+ +--4
+ ! +-----H022
+ +-32
+ ! +--H013
+ +-23
+ +--H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 1 no ..... .....
+ 1 17 no ..... .....
+ 17 22 yes ...1. .....
+ 22 H035 yes ..... ....0
+ 22 H007 no ..... .....
+ 17 25 yes 0.... .....
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+ 2 19 yes ..... 0....
+ 19 H008 no ..... .....
+ 19 14 no ..... .....
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+ 14 28 no ..... .....
+ 28 30 no ..... .....
+ 30 H005 yes ..... ....0
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+ 28 7 yes ...1. .....
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+ 8 H002 no ..... .....
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+ 4 32 yes ....1 .....
+ 32 H022 no ..... .....
+ 32 23 yes ..... 0....
+ 23 H013 no ..... .....
+ 23 H019 yes ..... ....1
+
+
+
+
+
+ +--H035
+ +----------------------------------------22
+ ! +--H007
+ +----------------------------------------------------------17
+ ! ! +--------------------------------------H025
+ ! ! !
+ ! +----25 +-----------------------------------H004
+ ! ! !
+ ! +--2 +--------------------------------H008
+ ! ! !
+ ! +-19 +-----------------------------H024
+ ! ! !
+ ! +-14 +--H005
+ ! ! +----------------------30
+ ! ! ! +--H031
+ ! +-28
+ ! ! +--------------------H016
+ ! +-----7
+ ! ! +-----------------H032
+--1 +-24
+ ! ! +--------------H021
+ ! +-26
+ ! ! +-----------H002
+ ! +--8
+ ! ! +--------H009
+ ! +-16
+ ! ! +-----H012
+ ! +-29
+ ! ! +--H023
+ ! +--6
+ ! +--H026
+ !
+ ! +--ANCE
+ ! +----------------------------------------------------35
+ ! ! +--H030
+ +----------------------------------------------27
+ ! +--------------------------------------------------H006
+ ! !
+ +----10 +-----------------------------------------------H028
+ ! !
+ +-13 +--------------------------------------------H015
+ ! !
+ +--9 +-----------------------------------------H001
+ ! !
+ ! ! +--------------------------------------H020
+ +-11 !
+ ! ! +-----------------H018
+ ! ! !
+ ! ! +----------------34 +--------------H003
+ +--3 ! ! !
+ ! ! +-21 +-----------H011
+ ! ! ! !
+ ! ! +-31 +--H014
+ ! ! ! +----33
+ +--5 ! ! +--H017
+ ! +-15
+ ! ! +--H010
+ ! +----12
+ ! +--H027
+ !
+ ! +--------------H029
+ +-------------------20
+ ! +-----------H033
+ +-18
+ ! +--------H034
+ +--4
+ ! +-----H022
+ +-32
+ ! +--H013
+ +-23
+ +--H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 1 no ..... .....
+ 1 17 no ..... .....
+ 17 22 yes ...1. .....
+ 22 H035 yes ..... ....0
+ 22 H007 no ..... .....
+ 17 25 yes 0.... .....
+ 25 H025 no ..... .....
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+ 2 H004 no ..... .....
+ 2 19 yes ..... 0....
+ 19 H008 no ..... .....
+ 19 14 no ..... .....
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+ 14 28 no ..... .....
+ 28 30 no ..... .....
+ 30 H005 yes ..... ....0
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+ 7 H016 no ..... .....
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+ 16 29 no ..... .....
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+ 4 32 yes ....1 .....
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+ 32 23 yes ..... 0....
+ 23 H013 no ..... .....
+ 23 H019 yes ..... ....1
+
+
+
+
+
+ +--H035
+ +----------------------------------------22
+ ! +--H007
+ +----------------------------------------------------------17
+ ! ! +--------------------------------------H025
+ ! ! !
+ ! +----25 +-----------------------------------H004
+ ! ! !
+ ! +--2 +--------------------------------H008
+ ! ! !
+ ! +-19 +-----------------------------H024
+ ! ! !
+ ! +-14 +--H005
+ ! ! +----------------------30
+ ! ! ! +--H031
+ ! +-28
+ ! ! +--------------------H016
+ ! +-----7
+ ! ! +-----------------H032
+--1 +-24
+ ! ! +--------------H021
+ ! +-26
+ ! ! +-----------H002
+ ! +--8
+ ! ! +--------H009
+ ! +-16
+ ! ! +-----H012
+ ! +-29
+ ! ! +--H023
+ ! +--6
+ ! +--H026
+ !
+ ! +--ANCE
+ ! +----------------------------------------------------35
+ ! ! +--H030
+ +----------------------------------------------27
+ ! +--------------------------------------------------H006
+ ! !
+ +----10 +-----------------------------------------------H028
+ ! !
+ +-13 +--------------------------------------------H015
+ ! !
+ +--9 +-----------------------------------------H001
+ ! !
+ ! ! +--------------------------------------H020
+ +-11 !
+ ! ! +-----------------H018
+ ! ! !
+ ! ! +----------------34 +--------------H011
+ +--3 ! ! !
+ ! ! +-31 +-----------H003
+ ! ! ! !
+ ! ! +-21 +--H014
+ ! ! ! +----33
+ +--5 ! ! +--H017
+ ! +-15
+ ! ! +--H010
+ ! +----12
+ ! +--H027
+ !
+ ! +--------------H029
+ +-------------------20
+ ! +-----------H033
+ +-18
+ ! +--------H034
+ +--4
+ ! +-----H022
+ +-32
+ ! +--H013
+ +-23
+ +--H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 1 no ..... .....
+ 1 17 no ..... .....
+ 17 22 yes ...1. .....
+ 22 H035 yes ..... ....0
+ 22 H007 no ..... .....
+ 17 25 yes 0.... .....
+ 25 H025 no ..... .....
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+ 2 19 yes ..... 0....
+ 19 H008 no ..... .....
+ 19 14 no ..... .....
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+ 14 28 no ..... .....
+ 28 30 no ..... .....
+ 30 H005 yes ..... ....0
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+ 28 7 yes ...1. .....
+ 7 H016 no ..... .....
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+ 26 8 yes 1.... .....
+ 8 H002 no ..... .....
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+ 16 29 no ..... .....
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+ 1 27 no ..... .....
+ 27 35 no ..... .....
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+ 4 32 yes ....1 .....
+ 32 H022 no ..... .....
+ 32 23 yes ..... 0....
+ 23 H013 no ..... .....
+ 23 H019 yes ..... ....1
+
+
+
+
+
+ +--H035
+ +----------------------------------------22
+ ! +--H007
+ +----------------------------------------------------------17
+ ! ! +--------------------------------------H025
+ ! ! !
+ ! +----25 +-----------------------------------H004
+ ! ! !
+ ! +--2 +--------------------------------H024
+ ! ! !
+ ! ! ! +-----H005
+ ! +-14 +----------------------30
+ ! ! ! ! +--H031
+ ! ! ! +-28
+ ! +-19 +--H008
+ ! !
+ ! ! +--------------------H016
+ ! +--------7
+ ! ! +-----------------H032
+--1 +-24
+ ! ! +--------------H021
+ ! +-26
+ ! ! +-----------H002
+ ! +--8
+ ! ! +--------H009
+ ! +-16
+ ! ! +-----H012
+ ! +-29
+ ! ! +--H023
+ ! +--6
+ ! +--H026
+ !
+ ! +--ANCE
+ ! +----------------------------------------------------35
+ ! ! +--H030
+ +----------------------------------------------27
+ ! +--------------------------------------------------H006
+ ! !
+ +----10 +-----------------------------------------------H028
+ ! !
+ +-13 +--------------------------------------------H015
+ ! !
+ ! ! +-----------------------------------------H001
+ +--9 !
+ ! ! +--------------------------------------H020
+ ! ! !
+ +-11 ! +--------------------H018
+ ! ! !
+ ! ! ! +--H011
+ ! ! +-------------34 +-------------31
+ +--3 ! ! ! +--H003
+ ! ! ! !
+ ! ! +-21 +--H014
+ ! ! ! +-------33
+ ! ! ! ! +--H017
+ ! ! +----15
+ +--5 ! +-----H033
+ ! +----18
+ ! ! +--H010
+ ! +-12
+ ! +--H027
+ !
+ ! +-----------H029
+ +----------------------20
+ ! +--------H034
+ +--4
+ ! +-----H022
+ +-32
+ ! +--H013
+ +-23
+ +--H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 1 no ..... .....
+ 1 17 no ..... .....
+ 17 22 yes ...1. .....
+ 22 H035 yes ..... ....0
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+ 14 19 no ..... .....
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+ 8 H002 no ..... .....
+ 8 16 yes ....0 .....
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+ 16 29 no ..... .....
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+ 29 6 yes ..... 1....
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+ 1 27 no ..... .....
+ 27 35 no ..... .....
+ 35 ANCE no ..... .....
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+ 11 3 no ..... .....
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+ 5 34 no ..... .....
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+ 15 18 yes ..... ....0
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+ 18 12 no ..... .....
+ 12 H010 no ..... .....
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+ 5 20 yes 0.... .....
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+ 20 4 yes ..... ....0
+ 4 H034 no ..... .....
+ 4 32 yes ....1 .....
+ 32 H022 no ..... .....
+ 32 23 yes ..... 0....
+ 23 H013 no ..... .....
+ 23 H019 yes ..... ....1
+
+
+
+
+
+ +--H035
+ +----------------------------------------22
+ ! +--H007
+ +----------------------------------------------------------17
+ ! ! +--------------------------------------H025
+ ! ! !
+ ! +----25 +-----------------------------------H004
+ ! ! !
+ ! ! ! +-----H005
+ ! +--2 +-------------------------30
+ ! ! ! ! +--H031
+ ! ! ! +-28
+ ! +-19 +--H008
+ ! !
+ ! ! +-----------------------H024
+ ! ! !
+ ! +-------14 +--------------------H016
+ ! ! !
+ ! +--7 +-----------------H032
+--1 ! !
+ ! +-24 +--------------H021
+ ! ! !
+ ! +-26 +-----------H002
+ ! ! !
+ ! +--8 +--H012
+ ! ! +----29
+ ! ! ! +--H009
+ ! +-16
+ ! ! +--H023
+ ! +-----6
+ ! +--H026
+ !
+ ! +--ANCE
+ ! +----------------------------------------------------35
+ ! ! +--H030
+ +----------------------------------------------27
+ ! +--------------------------------------------------H006
+ ! !
+ +----10 +-----------------------------------------------H015
+ ! !
+ +--9 +--------------------------------------------H028
+ ! !
+ ! ! +-----------------------------------------H001
+ +-13 !
+ ! ! +--------------------------------------H020
+ ! ! !
+ +-11 ! +--------------------H018
+ ! ! !
+ ! ! ! +--H011
+ ! ! +-------------34 +-------------31
+ +--3 ! ! ! +--H003
+ ! ! ! !
+ ! ! +-21 +--H014
+ ! ! ! +-------33
+ ! ! ! ! +--H017
+ ! ! +----15
+ +--5 ! +-----H010
+ ! +----12
+ ! ! +--H033
+ ! +-18
+ ! +--H027
+ !
+ ! +-----------H029
+ +----------------------20
+ ! +--------H034
+ +--4
+ ! +-----H022
+ +-32
+ ! +--H013
+ +-23
+ +--H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 1 no ..... .....
+ 1 17 no ..... .....
+ 17 22 yes ...1. .....
+ 22 H035 yes ..... ....0
+ 22 H007 no ..... .....
+ 17 25 yes 0.... .....
+ 25 H025 no ..... .....
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+ 2 19 yes ..... 0....
+ 19 30 no ..... .....
+ 30 H005 yes ..... ....0
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+ 8 H002 no ..... .....
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+ 16 29 no ..... .....
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+ 16 6 yes ..... 1....
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+ 6 H026 yes 0.... .....
+ 1 27 no ..... .....
+ 27 35 no ..... .....
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+ 11 3 no ..... .....
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+ 5 34 no ..... .....
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+ 21 31 no ..... .....
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+ 15 12 yes ..... ....0
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+ 12 18 no ..... .....
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+ 5 20 yes 0.... .....
+ 20 H029 no ..... .....
+ 20 4 yes ..... ....0
+ 4 H034 no ..... .....
+ 4 32 yes ....1 .....
+ 32 H022 no ..... .....
+ 32 23 yes ..... 0....
+ 23 H013 no ..... .....
+ 23 H019 yes ..... ....1
+
+
+
+
+
+ +--H035
+ +----------------------------------------22
+ ! +--H007
+ +----------------------------------------------------------17
+ ! ! +--------------------------------------H025
+ ! ! !
+ ! +----25 +-----------------------------------H004
+ ! ! !
+ ! ! ! +-----H005
+ ! +--2 +-------------------------30
+ ! ! ! ! +--H031
+ ! ! ! +-28
+ ! +-19 +--H008
+ ! !
+ ! ! +-----------------------H024
+ ! ! !
+ ! +-------14 +--------------------H016
+ ! ! !
+ ! +--7 +-----------------H032
+--1 ! !
+ ! +-24 +--------------H021
+ ! ! !
+ ! +-26 +-----------H002
+ ! ! !
+ ! +--8 +--H012
+ ! ! +----29
+ ! ! ! +--H009
+ ! +-16
+ ! ! +--H023
+ ! +-----6
+ ! +--H026
+ !
+ ! +--ANCE
+ ! +----------------------------------------------------35
+ ! ! +--H030
+ +----------------------------------------------27
+ ! +--------------------------------------------------H006
+ ! !
+ +----10 +-----------------------------------------------H015
+ ! !
+ +--9 +--------------------------------------------H028
+ ! !
+ ! ! +-----------------------------------------H001
+ +-13 !
+ ! ! +--------------------------------------H020
+ ! ! !
+ +-11 ! +--------------------H018
+ ! ! !
+ ! ! ! +--H011
+ ! ! +-------------34 +-------------31
+ +--3 ! ! ! +--H003
+ ! ! ! !
+ ! ! +-21 +--H014
+ ! ! ! +-------33
+ ! ! ! ! +--H017
+ ! ! +----15
+ +--5 ! +--H033
+ ! ! +-18
+ ! +----12 +--H010
+ ! !
+ ! +-----H027
+ !
+ ! +-----------H029
+ +----------------------20
+ ! +--------H034
+ +--4
+ ! +-----H022
+ +-32
+ ! +--H013
+ +-23
+ +--H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 1 no ..... .....
+ 1 17 no ..... .....
+ 17 22 yes ...1. .....
+ 22 H035 yes ..... ....0
+ 22 H007 no ..... .....
+ 17 25 yes 0.... .....
+ 25 H025 no ..... .....
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+ 19 30 no ..... .....
+ 30 H005 yes ..... ....0
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+ 28 H008 no ..... .....
+ 19 14 no ..... .....
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+ 14 7 yes ...1. .....
+ 7 H016 no ..... .....
+ 7 24 no ..... .....
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+ 24 26 yes ..1.. .....
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+ 16 29 no ..... .....
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+ 5 34 no ..... .....
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+ 18 H010 no ..... .....
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+ 5 20 yes 0.... .....
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+ 4 32 yes ....1 .....
+ 32 H022 no ..... .....
+ 32 23 yes ..... 0....
+ 23 H013 no ..... .....
+ 23 H019 yes ..... ....1
+
+
+
+
+
+ +--H035
+ +----------------------------------------22
+ ! +--H007
+ +----------------------------------------------------------17
+ ! ! +--------------------------------------H025
+ ! ! !
+ ! +----25 +-----------------------------------H004
+ ! ! !
+ ! ! ! +-----H005
+ ! +--2 +-------------------------30
+ ! ! ! ! +--H031
+ ! ! ! +-28
+ ! +-19 +--H008
+ ! !
+ ! ! +-----------------------H024
+ ! ! !
+ ! +-------14 +--------------------H016
+ ! ! !
+ ! +--7 +-----------------H032
+--1 ! !
+ ! +-24 +--------------H021
+ ! ! !
+ ! +-26 +-----------H002
+ ! ! !
+ ! +--8 +--H012
+ ! ! +----29
+ ! ! ! +--H009
+ ! +-16
+ ! ! +--H023
+ ! +-----6
+ ! +--H026
+ !
+ ! +--ANCE
+ ! +----------------------------------------------------35
+ ! ! +--H030
+ +----------------------------------------------27
+ ! +--------------------------------------------------H006
+ ! !
+ +----10 +-----------------------------------------------H015
+ ! !
+ +--9 +--------------------------------------------H028
+ ! !
+ ! ! +-----------------------------------------H020
+ +-13 !
+ ! ! +--------------------------------------H001
+ ! ! !
+ +--3 ! +--------------------H018
+ ! ! !
+ ! ! ! +--H011
+ ! ! +-------------34 +-------------31
+ +-11 ! ! ! +--H003
+ ! ! ! !
+ ! ! +-21 +--H014
+ ! ! ! +-------33
+ ! ! ! ! +--H017
+ ! ! +----15
+ +--5 ! +--H033
+ ! ! +-18
+ ! +----12 +--H010
+ ! !
+ ! +-----H027
+ !
+ ! +-----------H029
+ +----------------------20
+ ! +--------H034
+ +--4
+ ! +-----H022
+ +-32
+ ! +--H013
+ +-23
+ +--H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 1 no ..... .....
+ 1 17 no ..... .....
+ 17 22 yes ...1. .....
+ 22 H035 yes ..... ....0
+ 22 H007 no ..... .....
+ 17 25 yes 0.... .....
+ 25 H025 no ..... .....
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+ 19 30 no ..... .....
+ 30 H005 yes ..... ....0
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+ 28 H008 no ..... .....
+ 19 14 no ..... .....
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+ 24 26 yes ..1.. .....
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+ 16 29 no ..... .....
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+ 1 27 no ..... .....
+ 27 35 no ..... .....
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+ 3 11 no ..... .....
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+ 5 34 no ..... .....
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+ 18 H010 no ..... .....
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+ 5 20 yes 0.... .....
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+ 4 H034 no ..... .....
+ 4 32 yes ....1 .....
+ 32 H022 no ..... .....
+ 32 23 yes ..... 0....
+ 23 H013 no ..... .....
+ 23 H019 yes ..... ....1
+
+
+
+
+
+ +--H035
+ +----------------------------------------22
+ ! +--H007
+ +----------------------------------------------------------17
+ ! ! +--------------------------------------H025
+ ! ! !
+ ! +----25 +-----------------------------------H004
+ ! ! !
+ ! ! ! +-----H005
+ ! +--2 +-------------------------30
+ ! ! ! ! +--H031
+ ! ! ! +-28
+ ! +-19 +--H008
+ ! !
+ ! ! +-----------------------H024
+ ! ! !
+ ! +-------14 +--------------------H016
+ ! ! !
+ ! +--7 +-----------------H032
+--1 ! !
+ ! +-24 +--------------H021
+ ! ! !
+ ! +-26 +-----------H002
+ ! ! !
+ ! +--8 +--H012
+ ! ! +----29
+ ! ! ! +--H009
+ ! +-16
+ ! ! +--H023
+ ! +-----6
+ ! +--H026
+ !
+ ! +--ANCE
+ ! +----------------------------------------------------35
+ ! ! +--H030
+ +----------------------------------------------27
+ ! +--------------------------------------------------H006
+ ! !
+ +----10 +-----------------------------------------------H028
+ ! !
+ +-13 +--------------------------------------------H015
+ ! !
+ ! ! +-----------------------------------------H020
+ +--9 !
+ ! ! +--------------------------------------H001
+ ! ! !
+ +--3 ! +--------------------H018
+ ! ! !
+ ! ! ! +--H011
+ ! ! +-------------34 +-------------31
+ +-11 ! ! ! +--H003
+ ! ! ! !
+ ! ! +-21 +--H014
+ ! ! ! +-------33
+ ! ! ! ! +--H017
+ ! ! +----15
+ +--5 ! +--H033
+ ! ! +-18
+ ! +----12 +--H010
+ ! !
+ ! +-----H027
+ !
+ ! +-----------H029
+ +----------------------20
+ ! +--------H034
+ +--4
+ ! +-----H022
+ +-32
+ ! +--H013
+ +-23
+ +--H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 1 no ..... .....
+ 1 17 no ..... .....
+ 17 22 yes ...1. .....
+ 22 H035 yes ..... ....0
+ 22 H007 no ..... .....
+ 17 25 yes 0.... .....
+ 25 H025 no ..... .....
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+ 2 H004 no ..... .....
+ 2 19 yes ..... 0....
+ 19 30 no ..... .....
+ 30 H005 yes ..... ....0
+ 30 28 no ..... .....
+ 28 H031 yes ..... ..1..
+ 28 H008 no ..... .....
+ 19 14 no ..... .....
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+ 7 H016 no ..... .....
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+ 26 8 yes 1.... .....
+ 8 H002 no ..... .....
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+ 16 29 no ..... .....
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+ 16 6 yes ..... 1....
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+ 3 11 no ..... .....
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+ 5 34 no ..... .....
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+ 33 H014 yes 0.... .....
+ 33 H017 no ..... .....
+ 15 12 yes ..... ....0
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+ 18 H033 yes 0.... .....
+ 18 H010 no ..... .....
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+ 5 20 yes 0.... .....
+ 20 H029 no ..... .....
+ 20 4 yes ..... ....0
+ 4 H034 no ..... .....
+ 4 32 yes ....1 .....
+ 32 H022 no ..... .....
+ 32 23 yes ..... 0....
+ 23 H013 no ..... .....
+ 23 H019 yes ..... ....1
+
+
+
+
+
+ +--------------------------------------H025
+ !
+ +----------------------------------------------------------------25 +-----------------------------------H004
+ ! ! !
+ ! ! ! +-----H005
+ ! +--2 +-------------------------30
+ ! ! ! ! +--H031
+ ! ! ! +-28
+ ! +-19 +--H008
+ ! !
+ ! ! +-----------------------H024
+ ! ! !
+ ! +-------14 +--H032
+ ! ! +----------------24
+ ! ! ! +--H016
+ ! +--7
+ ! ! +--------------H021
+--1 ! !
+ ! +----26 +-----------H002
+ ! ! !
+ ! +--8 +--H012
+ ! ! +----29
+ ! ! ! +--H009
+ ! +-16
+ ! ! +--H023
+ ! +-----6
+ ! +--H026
+ !
+ ! +--H035
+ ! +----------------------------------------------------------22
+ ! ! +--H007
+ ! !
+ +----------------------------------------17 +--ANCE
+ ! +----------------------------------------------------35
+ ! ! +--H030
+ +----27
+ ! +--------------------------------------------------H006
+ ! !
+ +----10 +-----------------------------------------------H028
+ ! !
+ +-13 +--------------------------------------------H015
+ ! !
+ ! ! +-----------------------------------------H020
+ +--9 !
+ ! ! +--------------------------------------H001
+ ! ! !
+ +--3 ! +--------------------H018
+ ! ! !
+ ! ! ! +--H011
+ ! ! +-------------34 +-------------31
+ +-11 ! ! ! +--H003
+ ! ! ! !
+ ! ! +-21 +--H014
+ ! ! ! +-------33
+ ! ! ! ! +--H017
+ ! ! +----15
+ +--5 ! +-----H010
+ ! +----12
+ ! ! +--H033
+ ! +-18
+ ! +--H027
+ !
+ ! +-----------H029
+ +----------------------20
+ ! +--------H034
+ +--4
+ ! +-----H022
+ +-32
+ ! +--H013
+ +-23
+ +--H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 1 no ..... .....
+ 1 25 yes 0.... .....
+ 25 H025 no ..... .....
+ 25 2 yes ....1 .....
+ 2 H004 no ..... .....
+ 2 19 yes ..... 0....
+ 19 30 no ..... .....
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+ 28 H008 no ..... .....
+ 19 14 no ..... .....
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+ 14 7 yes ...1. .....
+ 7 24 no ..... .....
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+ 8 H002 no ..... .....
+ 8 16 yes ....0 .....
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+ 16 6 yes ..... 1....
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+ 22 H007 no ..... .....
+ 17 27 no ..... .....
+ 27 35 no ..... .....
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+ 3 11 no ..... .....
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+ 5 34 no ..... .....
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+ 21 31 no ..... .....
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+ 15 33 yes ..1.. .....
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+ 15 12 yes ..... ....0
+ 12 H010 no ..... .....
+ 12 18 no ..... .....
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+ 5 20 yes 0.... .....
+ 20 H029 no ..... .....
+ 20 4 yes ..... ....0
+ 4 H034 no ..... .....
+ 4 32 yes ....1 .....
+ 32 H022 no ..... .....
+ 32 23 yes ..... 0....
+ 23 H013 no ..... .....
+ 23 H019 yes ..... ....1
+
+
+
+
+
+ +--------------------------------------H025
+ !
+ +----------------------------------------------------------------25 +-----------------------------------H004
+ ! ! !
+ ! ! ! +-----H005
+ ! +--2 +-------------------------30
+ ! ! ! ! +--H031
+ ! ! ! +-28
+ ! +-19 +--H008
+ ! !
+ ! ! +-----------------------H024
+ ! ! !
+ ! +-------14 +--H032
+ ! ! +----------------24
+ ! ! ! +--H016
+ ! +--7
+ ! ! +--------------H021
+--1 ! !
+ ! +----26 +-----------H002
+ ! ! !
+ ! +--8 +--H012
+ ! ! +----29
+ ! ! ! +--H009
+ ! +-16
+ ! ! +--H023
+ ! +-----6
+ ! +--H026
+ !
+ ! +--H035
+ ! +----------------------------------------------------------22
+ ! ! +--H007
+ ! !
+ +----------------------------------------17 +--ANCE
+ ! +----------------------------------------------------35
+ ! ! +--H030
+ +----27
+ ! +--------------------------------------------------H006
+ ! !
+ +----10 +-----------------------------------------------H028
+ ! !
+ +-13 +--------------------------------------------H001
+ ! !
+ ! ! +-----------------------------------------H015
+ +-11 !
+ ! ! +--------------------------------------H020
+ ! ! !
+ +--9 ! +--------------------H018
+ ! ! !
+ ! ! ! +--H011
+ ! ! +-------------34 +-------------31
+ +--3 ! ! ! +--H003
+ ! ! ! !
+ ! ! +-21 +--H014
+ ! ! ! +-------33
+ ! ! ! ! +--H017
+ ! ! +----15
+ +--5 ! +-----H010
+ ! +----12
+ ! ! +--H033
+ ! +-18
+ ! +--H027
+ !
+ ! +-----------H029
+ +----------------------20
+ ! +--------H034
+ +--4
+ ! +-----H022
+ +-32
+ ! +--H013
+ +-23
+ +--H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 1 no ..... .....
+ 1 25 yes 0.... .....
+ 25 H025 no ..... .....
+ 25 2 yes ....1 .....
+ 2 H004 no ..... .....
+ 2 19 yes ..... 0....
+ 19 30 no ..... .....
+ 30 H005 yes ..... ....0
+ 30 28 no ..... .....
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+ 28 H008 no ..... .....
+ 19 14 no ..... .....
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+ 14 7 yes ...1. .....
+ 7 24 no ..... .....
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+ 7 26 yes ..1.. .....
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+ 26 8 yes 1.... .....
+ 8 H002 no ..... .....
+ 8 16 yes ....0 .....
+ 16 29 no ..... .....
+ 29 H012 no ..... .....
+ 29 H009 yes ..... ..1..
+ 16 6 yes ..... 1....
+ 6 H023 no ..... .....
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+ 1 17 no ..... .....
+ 17 22 yes ...1. .....
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+ 22 H007 no ..... .....
+ 17 27 no ..... .....
+ 27 35 no ..... .....
+ 35 ANCE no ..... .....
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+ 27 10 yes .0... .....
+ 10 H006 no ..... .....
+ 10 13 yes ..... .1.1.
+ 13 H028 no ..... .....
+ 13 11 yes ..... ..1..
+ 11 H001 no ..... .....
+ 11 9 no ..... .....
+ 9 H015 yes ..... ...0.
+ 9 3 no ..... .....
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+ 5 34 no ..... .....
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+ 34 21 yes ...1. .....
+ 21 31 no ..... .....
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+ 21 15 no ..... .....
+ 15 33 yes ..1.. .....
+ 33 H014 yes 0.... .....
+ 33 H017 no ..... .....
+ 15 12 yes ..... ....0
+ 12 H010 no ..... .....
+ 12 18 no ..... .....
+ 18 H033 yes 0.... .....
+ 18 H027 yes ..1.. 0....
+ 5 20 yes 0.... .....
+ 20 H029 no ..... .....
+ 20 4 yes ..... ....0
+ 4 H034 no ..... .....
+ 4 32 yes ....1 .....
+ 32 H022 no ..... .....
+ 32 23 yes ..... 0....
+ 23 H013 no ..... .....
+ 23 H019 yes ..... ....1
+
+
+
+
+
+ +--H035
+ +----------------------------------------22
+ ! +--H007
+ +----------------------------------------------------------17
+ ! ! +--------------------------------------H025
+ ! ! !
+ ! +----25 +-----------------------------------H004
+ ! ! !
+ ! ! ! +-----H005
+ ! +--2 +-------------------------30
+ ! ! ! ! +--H031
+ ! ! ! +-28
+ ! +-19 +--H008
+ ! !
+ ! ! +-----------------------H024
+ ! ! !
+ ! +-------14 +--H032
+ ! ! +----------------24
+ ! ! ! +--H016
+--1 +--7
+ ! ! +--------------H021
+ ! ! !
+ ! +----26 +-----------H002
+ ! ! !
+ ! +--8 +--H012
+ ! ! +----29
+ ! ! ! +--H009
+ ! +-16
+ ! ! +--H023
+ ! +-----6
+ ! +--H026
+ !
+ ! +--ANCE
+ ! +----------------------------------------------------35
+ ! ! +--H030
+ +----------------------------------------------27
+ ! +--------------------------------------------------H006
+ ! !
+ +----10 +-----------------------------------------------H028
+ ! !
+ ! ! +--------------------------------------------H020
+ +-13 !
+ ! ! +--H001
+ ! ! +-------------------------------------11
+ +--3 ! +--H015
+ ! !
+ ! ! +--------------------H018
+ ! ! !
+ ! ! ! +--H011
+ +--9 +-------------34 +-------------31
+ ! ! ! ! +--H003
+ ! ! ! !
+ ! ! +-21 +--H033
+ ! ! ! +-------18
+ ! ! ! ! +--H010
+ ! ! +----12
+ +-----5 ! +-----H017
+ ! +----15
+ ! ! +--H014
+ ! +-33
+ ! +--H027
+ !
+ ! +-----------H029
+ +----------------------20
+ ! +--------H034
+ +--4
+ ! +-----H022
+ +-32
+ ! +--H013
+ +-23
+ +--H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 1 no ..... .....
+ 1 17 no ..... .....
+ 17 22 yes ...1. .....
+ 22 H035 yes ..... ....0
+ 22 H007 no ..... .....
+ 17 25 yes 0.... .....
+ 25 H025 no ..... .....
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+ 2 H004 no ..... .....
+ 2 19 yes ..... 0....
+ 19 30 no ..... .....
+ 30 H005 yes ..... ....0
+ 30 28 no ..... .....
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+ 28 H008 no ..... .....
+ 19 14 no ..... .....
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+ 14 7 yes ...1. .....
+ 7 24 no ..... .....
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+ 24 H016 no ..... .....
+ 7 26 yes ..1.. .....
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+ 26 8 yes 1.... .....
+ 8 H002 no ..... .....
+ 8 16 yes ....0 .....
+ 16 29 no ..... .....
+ 29 H012 no ..... .....
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+ 16 6 yes ..... 1....
+ 6 H023 no ..... .....
+ 6 H026 yes 0.... .....
+ 1 27 no ..... .....
+ 27 35 no ..... .....
+ 35 ANCE no ..... .....
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+ 27 10 yes .0... .....
+ 10 H006 no ..... .....
+ 10 13 yes ..... .1.1.
+ 13 H028 no ..... .....
+ 13 3 yes ..... ..1..
+ 3 H020 yes ..... ....0
+ 3 9 no ..... .....
+ 9 11 no ..... .....
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+ 5 34 no ..... .....
+ 34 H018 no ..... .....
+ 34 21 yes ...1. .....
+ 21 31 no ..... .....
+ 31 H011 no ..... .....
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+ 21 12 no ..... .....
+ 12 18 yes ..... ....0
+ 18 H033 yes 0.... .....
+ 18 H010 no ..... .....
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+ 15 H017 no ..... .....
+ 15 33 no ..... .....
+ 33 H014 yes 0.... .....
+ 33 H027 yes ..... 0...0
+ 5 20 yes 0.... .....
+ 20 H029 no ..... .....
+ 20 4 yes ..... ....0
+ 4 H034 no ..... .....
+ 4 32 yes ....1 .....
+ 32 H022 no ..... .....
+ 32 23 yes ..... 0....
+ 23 H013 no ..... .....
+ 23 H019 yes ..... ....1
+
+
+
+
+
+ +--H035
+ +----------------------------------------22
+ ! +--H007
+ +----------------------------------------------------------17
+ ! ! +--------------------------------------H025
+ ! ! !
+ ! +----25 +-----------------------------------H004
+ ! ! !
+ ! ! ! +-----H005
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+ ! ! ! ! +--H031
+ ! ! ! +-28
+ ! +-19 +--H008
+ ! !
+ ! ! +-----------------------H024
+ ! ! !
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+ ! ! ! +--H016
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+ ! ! !
+ ! +----26 +-----------H002
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+ ! +--8 +--H012
+ ! ! +----29
+ ! ! ! +--H009
+ ! +-16
+ ! ! +--H023
+ ! +-----6
+ ! +--H026
+ !
+ ! +--ANCE
+ ! +----------------------------------------------------35
+ ! ! +--H030
+ +----------------------------------------------27
+ ! +--------------------------------------------------H006
+ ! !
+ +----10 +-----------------------------------------------H028
+ ! !
+ ! ! +--------------------------------------------H020
+ +-13 !
+ ! ! +--H001
+ ! ! +-------------------------------------11
+ +--3 ! +--H015
+ ! !
+ ! ! +--------------------H018
+ ! ! !
+ ! ! ! +--H011
+ +--9 +-------------34 +-------------31
+ ! ! ! ! +--H003
+ ! ! ! !
+ ! ! +-21 +--H033
+ ! ! ! +-------18
+ ! ! ! ! +--H010
+ ! ! +----12
+ +-----5 ! +--H014
+ ! ! +-33
+ ! +----15 +--H017
+ ! !
+ ! +-----H027
+ !
+ ! +-----------H029
+ +----------------------20
+ ! +--------H034
+ +--4
+ ! +-----H022
+ +-32
+ ! +--H013
+ +-23
+ +--H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 1 no ..... .....
+ 1 17 no ..... .....
+ 17 22 yes ...1. .....
+ 22 H035 yes ..... ....0
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+ 17 25 yes 0.... .....
+ 25 H025 no ..... .....
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+ 19 30 no ..... .....
+ 30 H005 yes ..... ....0
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+ 28 H008 no ..... .....
+ 19 14 no ..... .....
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+ 7 24 no ..... .....
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+ 32 H022 no ..... .....
+ 32 23 yes ..... 0....
+ 23 H013 no ..... .....
+ 23 H019 yes ..... ....1
+
+
+
+
+
+ +--H035
+ +----------------------------------------22
+ ! +--H007
+ +----------------------------------------------------------17
+ ! ! +--------------------------------------H025
+ ! ! !
+ ! +----25 +-----------------------------------H004
+ ! ! !
+ ! ! ! +-----H005
+ ! +--2 +-------------------------30
+ ! ! ! ! +--H031
+ ! ! ! +-28
+ ! +-19 +--H008
+ ! !
+ ! ! +-----------------------H024
+ ! ! !
+ ! +-------14 +--H032
+ ! ! +----------------24
+ ! ! ! +--H016
+--1 +--7
+ ! ! +--------------H021
+ ! ! !
+ ! +----26 +-----------H002
+ ! ! !
+ ! +--8 +--H012
+ ! ! +----29
+ ! ! ! +--H009
+ ! +-16
+ ! ! +--H023
+ ! +-----6
+ ! +--H026
+ !
+ ! +--ANCE
+ ! +----------------------------------------------------35
+ ! ! +--H030
+ +----------------------------------------------27
+ ! +--------------------------------------------------H006
+ ! !
+ +----10 +-----------------------------------------------H028
+ ! !
+ ! ! +--------------------------------------------H020
+ +-13 !
+ ! ! +--H001
+ ! ! +-------------------------------------11
+ +--3 ! +--H015
+ ! !
+ ! ! +--------------------H018
+ ! ! !
+ ! ! ! +--H011
+ +--9 +-------------34 +-------------31
+ ! ! ! ! +--H003
+ ! ! ! !
+ ! ! +-21 +--H033
+ ! ! ! +-------18
+ ! ! ! ! +--H010
+ ! ! +----12
+ +-----5 ! +-----H014
+ ! +----33
+ ! ! +--H017
+ ! +-15
+ ! +--H027
+ !
+ ! +-----------H029
+ +----------------------20
+ ! +--------H034
+ +--4
+ ! +-----H022
+ +-32
+ ! +--H013
+ +-23
+ +--H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 1 no ..... .....
+ 1 17 no ..... .....
+ 17 22 yes ...1. .....
+ 22 H035 yes ..... ....0
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+ 17 25 yes 0.... .....
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+ 19 30 no ..... .....
+ 30 H005 yes ..... ....0
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+ 28 H008 no ..... .....
+ 19 14 no ..... .....
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+ 7 24 no ..... .....
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+ 7 26 yes ..1.. .....
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+ 26 8 yes 1.... .....
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+ 1 27 no ..... .....
+ 27 35 no ..... .....
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+ 3 9 no ..... .....
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+ 4 32 yes ....1 .....
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+ 32 23 yes ..... 0....
+ 23 H013 no ..... .....
+ 23 H019 yes ..... ....1
+
+
+
+
+
+ +--H035
+ +----------------------------------------22
+ ! +--H007
+ +----------------------------------------------------------17
+ ! ! +--------------------------------------H025
+ ! ! !
+ ! +----25 +-----------------------------------H004
+ ! ! !
+ ! ! ! +-----H005
+ ! +--2 +-------------------------30
+ ! ! ! ! +--H031
+ ! ! ! +-28
+ ! +-19 +--H008
+ ! !
+ ! ! +-----------------------H024
+ ! ! !
+ ! +-------14 +--H032
+ ! ! +----------------24
+ ! ! ! +--H016
+--1 +--7
+ ! ! +--------------H021
+ ! ! !
+ ! +----26 +-----------H002
+ ! ! !
+ ! +--8 +--H012
+ ! ! +----29
+ ! ! ! +--H009
+ ! +-16
+ ! ! +--H023
+ ! +-----6
+ ! +--H026
+ !
+ ! +--ANCE
+ ! +----------------------------------------------------35
+ ! ! +--H030
+ +----------------------------------------------27
+ ! +--------------------------------------------------H006
+ ! !
+ +----10 +-----------------------------------------------H028
+ ! !
+ ! ! +--------------------------------------------H020
+ +-13 !
+ ! ! +--H001
+ ! ! +-------------------------------------11
+ +--3 ! +--H015
+ ! !
+ ! ! +--------------------H018
+ ! ! !
+ ! ! ! +--H011
+ +--9 +-------------34 +-------------31
+ ! ! ! ! +--H003
+ ! ! ! !
+ ! ! +-21 +--H014
+ ! ! ! +-------33
+ ! ! ! ! +--H017
+ ! ! +----15
+ +-----5 ! +-----H010
+ ! +----12
+ ! ! +--H033
+ ! +-18
+ ! +--H027
+ !
+ ! +-----------H029
+ +----------------------20
+ ! +--------H034
+ +--4
+ ! +-----H022
+ +-32
+ ! +--H013
+ +-23
+ +--H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 1 no ..... .....
+ 1 17 no ..... .....
+ 17 22 yes ...1. .....
+ 22 H035 yes ..... ....0
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+ 17 25 yes 0.... .....
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+ 19 30 no ..... .....
+ 30 H005 yes ..... ....0
+ 30 28 no ..... .....
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+ 28 H008 no ..... .....
+ 19 14 no ..... .....
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+ 5 20 yes 0.... .....
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+ 4 32 yes ....1 .....
+ 32 H022 no ..... .....
+ 32 23 yes ..... 0....
+ 23 H013 no ..... .....
+ 23 H019 yes ..... ....1
+
+
+
+
+
+ +--H035
+ +----------------------------------------22
+ ! +--H007
+ +----------------------------------------------------------17
+ ! ! +--------------------------------------H025
+ ! ! !
+ ! +----25 +-----------------------------------H004
+ ! ! !
+ ! ! ! +-----H005
+ ! +--2 +-------------------------30
+ ! ! ! ! +--H031
+ ! ! ! +-28
+ ! +-19 +--H008
+ ! !
+ ! ! +-----------------------H024
+ ! ! !
+ ! +-------14 +--H032
+ ! ! +----------------24
+ ! ! ! +--H016
+--1 +--7
+ ! ! +--------------H021
+ ! ! !
+ ! +----26 +-----------H002
+ ! ! !
+ ! +--8 +--H012
+ ! ! +----29
+ ! ! ! +--H009
+ ! +-16
+ ! ! +--H023
+ ! +-----6
+ ! +--H026
+ !
+ ! +--ANCE
+ ! +----------------------------------------------------35
+ ! ! +--H030
+ +----------------------------------------------27
+ ! +--------------------------------------------------H006
+ ! !
+ +----10 +-----------------------------------------------H028
+ ! !
+ ! ! +--------------------------------------------H020
+ +-13 !
+ ! ! +--H001
+ ! ! +-------------------------------------11
+ +--3 ! +--H015
+ ! !
+ ! ! +--------------------H018
+ ! ! !
+ ! ! ! +--H011
+ +--9 +-------------34 +-------------31
+ ! ! ! ! +--H003
+ ! ! ! !
+ ! ! +-21 +--H014
+ ! ! ! +-------33
+ ! ! ! ! +--H017
+ ! ! +----15
+ +-----5 ! +--H033
+ ! ! +-18
+ ! +----12 +--H010
+ ! !
+ ! +-----H027
+ !
+ ! +-----------H029
+ +----------------------20
+ ! +--------H034
+ +--4
+ ! +-----H022
+ +-32
+ ! +--H013
+ +-23
+ +--H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 1 no ..... .....
+ 1 17 no ..... .....
+ 17 22 yes ...1. .....
+ 22 H035 yes ..... ....0
+ 22 H007 no ..... .....
+ 17 25 yes 0.... .....
+ 25 H025 no ..... .....
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+ 2 19 yes ..... 0....
+ 19 30 no ..... .....
+ 30 H005 yes ..... ....0
+ 30 28 no ..... .....
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+ 28 H008 no ..... .....
+ 19 14 no ..... .....
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+ 7 26 yes ..1.. .....
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+ 1 27 no ..... .....
+ 27 35 no ..... .....
+ 35 ANCE no ..... .....
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+ 3 9 no ..... .....
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+ 5 34 no ..... .....
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+ 21 31 no ..... .....
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+ 33 H017 no ..... .....
+ 15 12 yes ..... ....0
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+ 18 H010 no ..... .....
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+ 5 20 yes 0.... .....
+ 20 H029 no ..... .....
+ 20 4 yes ..... ....0
+ 4 H034 no ..... .....
+ 4 32 yes ....1 .....
+ 32 H022 no ..... .....
+ 32 23 yes ..... 0....
+ 23 H013 no ..... .....
+ 23 H019 yes ..... ....1
+
+
+
+
+
+ +--H035
+ +----------------------------------------22
+ ! +--H007
+ +----------------------------------------------------------17
+ ! ! +--------------------------------------H025
+ ! ! !
+ ! +----25 +-----------------------------------H004
+ ! ! !
+ ! ! ! +-----H005
+ ! +--2 +-------------------------30
+ ! ! ! ! +--H031
+ ! ! ! +-28
+ ! +-19 +--H008
+ ! !
+ ! ! +-----------------------H024
+ ! ! !
+ ! +-------14 +--------------------H032
+ ! ! !
+ ! +-24 +-----------------H016
+--1 ! !
+ ! +--7 +--------------H021
+ ! ! !
+ ! +-26 +-----------H002
+ ! ! !
+ ! +--8 +--H012
+ ! ! +----29
+ ! ! ! +--H009
+ ! +-16
+ ! ! +--H023
+ ! +-----6
+ ! +--H026
+ !
+ ! +--ANCE
+ ! +----------------------------------------------------35
+ ! ! +--H030
+ +----------------------------------------------27
+ ! +--------------------------------------------------H006
+ ! !
+ +----10 +-----------------------------------------------H028
+ ! !
+ ! ! +--------------------------------------------H020
+ +-13 !
+ ! ! +--H001
+ ! ! +-------------------------------------11
+ +--3 ! +--H015
+ ! !
+ ! ! +--------------------H018
+ ! ! !
+ ! ! ! +--H011
+ +--9 +-------------34 +-------------31
+ ! ! ! ! +--H003
+ ! ! ! !
+ ! ! +-21 +--H014
+ ! ! ! +-------33
+ ! ! ! ! +--H017
+ ! ! +----15
+ +-----5 ! +--H033
+ ! ! +-18
+ ! +----12 +--H010
+ ! !
+ ! +-----H027
+ !
+ ! +-----------H029
+ +----------------------20
+ ! +--------H034
+ +--4
+ ! +-----H022
+ +-32
+ ! +--H013
+ +-23
+ +--H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 1 no ..... .....
+ 1 17 no ..... .....
+ 17 22 yes ...1. .....
+ 22 H035 yes ..... ....0
+ 22 H007 no ..... .....
+ 17 25 yes 0.... .....
+ 25 H025 no ..... .....
+ 25 2 yes ....1 .....
+ 2 H004 no ..... .....
+ 2 19 yes ..... 0....
+ 19 30 no ..... .....
+ 30 H005 yes ..... ....0
+ 30 28 no ..... .....
+ 28 H031 yes ..... ..1..
+ 28 H008 no ..... .....
+ 19 14 no ..... .....
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+ 24 7 no ..... .....
+ 7 H016 no ..... .....
+ 7 26 yes ..1.. .....
+ 26 H021 yes ..... ..1..
+ 26 8 yes 1.... .....
+ 8 H002 no ..... .....
+ 8 16 yes ....0 .....
+ 16 29 no ..... .....
+ 29 H012 no ..... .....
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+ 16 6 yes ..... 1....
+ 6 H023 no ..... .....
+ 6 H026 yes 0.... .....
+ 1 27 no ..... .....
+ 27 35 no ..... .....
+ 35 ANCE no ..... .....
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+ 27 10 yes .0... .....
+ 10 H006 no ..... .....
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+ 13 H028 no ..... .....
+ 13 3 yes ..... ..1..
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+ 3 9 no ..... .....
+ 9 11 no ..... .....
+ 11 H001 no ..... .....
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+ 9 5 yes .1... .....
+ 5 34 no ..... .....
+ 34 H018 no ..... .....
+ 34 21 yes ...1. .....
+ 21 31 no ..... .....
+ 31 H011 no ..... .....
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+ 15 33 maybe ..1.. .....
+ 33 H014 yes 0.... .....
+ 33 H017 no ..... .....
+ 15 12 yes ..... ....0
+ 12 18 maybe ..0.. .....
+ 18 H033 yes 0.... .....
+ 18 H010 no ..... .....
+ 12 H027 yes ..1.. 0....
+ 5 20 yes 0.... .....
+ 20 H029 no ..... .....
+ 20 4 yes ..... ....0
+ 4 H034 no ..... .....
+ 4 32 yes ....1 .....
+ 32 H022 no ..... .....
+ 32 23 yes ..... 0....
+ 23 H013 no ..... .....
+ 23 H019 yes ..... ....1
+
+
+
+
+
+ +--H035
+ +----------------------------------------22
+ ! +--H007
+ +----------------------------------------------------------17
+ ! ! +--------------------------------------H025
+ ! ! !
+ ! +----25 +-----------------------------------H004
+ ! ! !
+ ! ! ! +-----H005
+ ! +--2 +-------------------------30
+ ! ! ! ! +--H031
+ ! ! ! +-28
+ ! +-19 +--H008
+ ! !
+ ! ! +-----------------------H024
+ ! ! !
+ ! +-------14 +--------------------H016
+ ! ! !
+ ! +--7 +-----------------H032
+--1 ! !
+ ! +-24 +--------------H021
+ ! ! !
+ ! +-26 +-----------H002
+ ! ! !
+ ! +--8 +--H012
+ ! ! +----29
+ ! ! ! +--H009
+ ! +-16
+ ! ! +--H023
+ ! +-----6
+ ! +--H026
+ !
+ ! +--ANCE
+ ! +----------------------------------------------------35
+ ! ! +--H030
+ +----------------------------------------------27
+ ! +--------------------------------------------------H006
+ ! !
+ +----10 +-----------------------------------------------H028
+ ! !
+ ! ! +--------------------------------------------H020
+ +-13 !
+ ! ! +--H001
+ ! ! +-------------------------------------11
+ +--3 ! +--H015
+ ! !
+ ! ! +--------------------H018
+ ! ! !
+ ! ! ! +--H011
+ +--9 +-------------34 +-------------31
+ ! ! ! ! +--H003
+ ! ! ! !
+ ! ! +-21 +--H014
+ ! ! ! +-------33
+ ! ! ! ! +--H017
+ ! ! +----15
+ +-----5 ! +--H033
+ ! ! +-18
+ ! +----12 +--H010
+ ! !
+ ! +-----H027
+ !
+ ! +-----------H029
+ +----------------------20
+ ! +--------H034
+ +--4
+ ! +-----H022
+ +-32
+ ! +--H013
+ +-23
+ +--H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 1 no ..... .....
+ 1 17 no ..... .....
+ 17 22 yes ...1. .....
+ 22 H035 yes ..... ....0
+ 22 H007 no ..... .....
+ 17 25 yes 0.... .....
+ 25 H025 no ..... .....
+ 25 2 yes ....1 .....
+ 2 H004 no ..... .....
+ 2 19 yes ..... 0....
+ 19 30 no ..... .....
+ 30 H005 yes ..... ....0
+ 30 28 no ..... .....
+ 28 H031 yes ..... ..1..
+ 28 H008 no ..... .....
+ 19 14 no ..... .....
+ 14 H024 yes ..... ...1.
+ 14 7 yes ...1. .....
+ 7 H016 no ..... .....
+ 7 24 no ..... .....
+ 24 H032 yes ..... .1...
+ 24 26 yes ..1.. .....
+ 26 H021 yes ..... ..1..
+ 26 8 yes 1.... .....
+ 8 H002 no ..... .....
+ 8 16 yes ....0 .....
+ 16 29 no ..... .....
+ 29 H012 no ..... .....
+ 29 H009 yes ..... ..1..
+ 16 6 yes ..... 1....
+ 6 H023 no ..... .....
+ 6 H026 yes 0.... .....
+ 1 27 no ..... .....
+ 27 35 no ..... .....
+ 35 ANCE no ..... .....
+ 35 H030 yes ..... ...1.
+ 27 10 yes .0... .....
+ 10 H006 no ..... .....
+ 10 13 yes ..... .1.1.
+ 13 H028 no ..... .....
+ 13 3 yes ..... ..1..
+ 3 H020 yes ..... ....0
+ 3 9 no ..... .....
+ 9 11 no ..... .....
+ 11 H001 no ..... .....
+ 11 H015 yes ..... ...0.
+ 9 5 yes .1... .....
+ 5 34 no ..... .....
+ 34 H018 no ..... .....
+ 34 21 yes ...1. .....
+ 21 31 no ..... .....
+ 31 H011 no ..... .....
+ 31 H003 yes ....1 .....
+ 21 15 maybe ..?.. .....
+ 15 33 maybe ..1.. .....
+ 33 H014 yes 0.... .....
+ 33 H017 no ..... .....
+ 15 12 yes ..... ....0
+ 12 18 maybe ..0.. .....
+ 18 H033 yes 0.... .....
+ 18 H010 no ..... .....
+ 12 H027 yes ..1.. 0....
+ 5 20 yes 0.... .....
+ 20 H029 no ..... .....
+ 20 4 yes ..... ....0
+ 4 H034 no ..... .....
+ 4 32 yes ....1 .....
+ 32 H022 no ..... .....
+ 32 23 yes ..... 0....
+ 23 H013 no ..... .....
+ 23 H019 yes ..... ....1
+
+
+
+
+
+ +--H035
+ +----------------------------------------22
+ ! +--H007
+ +----------------------------------------------------------17
+ ! ! +--------------------------------------H025
+ ! ! !
+ ! +----25 +-----------------------------------H004
+ ! ! !
+ ! ! ! +-----H005
+ ! +--2 +-------------------------30
+ ! ! ! ! +--H031
+ ! ! ! +-28
+ ! +-19 +--H008
+ ! !
+ ! ! +-----------------------H024
+ ! ! !
+ ! +-------14 +--H032
+ ! ! +----------------24
+ ! ! ! +--H016
+--1 +--7
+ ! ! +--------------H021
+ ! ! !
+ ! +----26 +-----------H002
+ ! ! !
+ ! +--8 +--H012
+ ! ! +----29
+ ! ! ! +--H009
+ ! +-16
+ ! ! +--H023
+ ! +-----6
+ ! +--H026
+ !
+ ! +--ANCE
+ ! +----------------------------------------------------35
+ ! ! +--H030
+ +----------------------------------------------27
+ ! +--------------------------------------------------H006
+ ! !
+ +----10 +-----------------------------------------------H028
+ ! !
+ ! ! +--------------------------------------------H020
+ +-13 !
+ ! ! +--H001
+ ! ! +-------------------------------------11
+ +--3 ! +--H015
+ ! !
+ ! ! +--------------------H018
+ ! ! !
+ ! ! ! +--H011
+ +--9 +-------------34 +-------------31
+ ! ! ! ! +--H003
+ ! ! ! !
+ ! ! +-21 +--H014
+ ! ! ! +-------33
+ ! ! ! ! +--H017
+ ! ! +----15
+ +-----5 ! +-----H033
+ ! +----18
+ ! ! +--H010
+ ! +-12
+ ! +--H027
+ !
+ ! +-----------H029
+ +----------------------20
+ ! +--------H034
+ +--4
+ ! +-----H022
+ +-32
+ ! +--H013
+ +-23
+ +--H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 1 no ..... .....
+ 1 17 no ..... .....
+ 17 22 yes ...1. .....
+ 22 H035 yes ..... ....0
+ 22 H007 no ..... .....
+ 17 25 yes 0.... .....
+ 25 H025 no ..... .....
+ 25 2 yes ....1 .....
+ 2 H004 no ..... .....
+ 2 19 yes ..... 0....
+ 19 30 no ..... .....
+ 30 H005 yes ..... ....0
+ 30 28 no ..... .....
+ 28 H031 yes ..... ..1..
+ 28 H008 no ..... .....
+ 19 14 no ..... .....
+ 14 H024 yes ..... ...1.
+ 14 7 yes ...1. .....
+ 7 24 no ..... .....
+ 24 H032 yes ..... .1...
+ 24 H016 no ..... .....
+ 7 26 yes ..1.. .....
+ 26 H021 yes ..... ..1..
+ 26 8 yes 1.... .....
+ 8 H002 no ..... .....
+ 8 16 yes ....0 .....
+ 16 29 no ..... .....
+ 29 H012 no ..... .....
+ 29 H009 yes ..... ..1..
+ 16 6 yes ..... 1....
+ 6 H023 no ..... .....
+ 6 H026 yes 0.... .....
+ 1 27 no ..... .....
+ 27 35 no ..... .....
+ 35 ANCE no ..... .....
+ 35 H030 yes ..... ...1.
+ 27 10 yes .0... .....
+ 10 H006 no ..... .....
+ 10 13 yes ..... .1.1.
+ 13 H028 no ..... .....
+ 13 3 yes ..... ..1..
+ 3 H020 yes ..... ....0
+ 3 9 no ..... .....
+ 9 11 no ..... .....
+ 11 H001 no ..... .....
+ 11 H015 yes ..... ...0.
+ 9 5 yes .1... .....
+ 5 34 no ..... .....
+ 34 H018 no ..... .....
+ 34 21 yes ...1. .....
+ 21 31 no ..... .....
+ 31 H011 no ..... .....
+ 31 H003 yes ....1 .....
+ 21 15 no ..... .....
+ 15 33 yes ..1.. .....
+ 33 H014 yes 0.... .....
+ 33 H017 no ..... .....
+ 15 18 yes ..... ....0
+ 18 H033 yes 0.... .....
+ 18 12 no ..... .....
+ 12 H010 no ..... .....
+ 12 H027 yes ..1.. 0....
+ 5 20 yes 0.... .....
+ 20 H029 no ..... .....
+ 20 4 yes ..... ....0
+ 4 H034 no ..... .....
+ 4 32 yes ....1 .....
+ 32 H022 no ..... .....
+ 32 23 yes ..... 0....
+ 23 H013 no ..... .....
+ 23 H019 yes ..... ....1
+
+
+
+
+
+ +--------------------------------------H025
+ !
+ +----------------------------------------------------------------25 +-----------------------------------H004
+ ! ! !
+ ! ! ! +-----H005
+ ! +--2 +-------------------------30
+ ! ! ! ! +--H031
+ ! ! ! +-28
+ ! +-19 +--H008
+ ! !
+ ! ! +-----------------------H024
+ ! ! !
+ ! +-------14 +--H032
+ ! ! +----------------24
+ ! ! ! +--H016
+ ! +--7
+ ! ! +--------------H021
+--1 ! !
+ ! +----26 +-----------H002
+ ! ! !
+ ! +--8 +--H012
+ ! ! +----29
+ ! ! ! +--H009
+ ! +-16
+ ! ! +--H023
+ ! +-----6
+ ! +--H026
+ !
+ ! +--H035
+ ! +----------------------------------------------------------22
+ ! ! +--H007
+ ! !
+ +----------------------------------------17 +--ANCE
+ ! +----------------------------------------------------35
+ ! ! +--H030
+ +----27
+ ! +--------------------------------------------------H006
+ ! !
+ +----10 +-----------------------------------------------H028
+ ! !
+ +-13 +--------------------------------------------H001
+ ! !
+ ! ! +-----------------------------------------H020
+ +-11 !
+ ! ! +--------------------------------------H015
+ ! ! !
+ +--3 ! +--------------------H018
+ ! ! !
+ ! ! ! +--H011
+ ! ! +-------------34 +-------------31
+ +--9 ! ! ! +--H003
+ ! ! ! !
+ ! ! +-21 +--H014
+ ! ! ! +-------33
+ ! ! ! ! +--H017
+ ! ! +----15
+ +--5 ! +-----H010
+ ! +----12
+ ! ! +--H033
+ ! +-18
+ ! +--H027
+ !
+ ! +-----------H029
+ +----------------------20
+ ! +--------H034
+ +--4
+ ! +-----H022
+ +-32
+ ! +--H013
+ +-23
+ +--H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 1 no ..... .....
+ 1 25 yes 0.... .....
+ 25 H025 no ..... .....
+ 25 2 yes ....1 .....
+ 2 H004 no ..... .....
+ 2 19 yes ..... 0....
+ 19 30 no ..... .....
+ 30 H005 yes ..... ....0
+ 30 28 no ..... .....
+ 28 H031 yes ..... ..1..
+ 28 H008 no ..... .....
+ 19 14 no ..... .....
+ 14 H024 yes ..... ...1.
+ 14 7 yes ...1. .....
+ 7 24 no ..... .....
+ 24 H032 yes ..... .1...
+ 24 H016 no ..... .....
+ 7 26 yes ..1.. .....
+ 26 H021 yes ..... ..1..
+ 26 8 yes 1.... .....
+ 8 H002 no ..... .....
+ 8 16 yes ....0 .....
+ 16 29 no ..... .....
+ 29 H012 no ..... .....
+ 29 H009 yes ..... ..1..
+ 16 6 yes ..... 1....
+ 6 H023 no ..... .....
+ 6 H026 yes 0.... .....
+ 1 17 no ..... .....
+ 17 22 yes ...1. .....
+ 22 H035 yes ..... ....0
+ 22 H007 no ..... .....
+ 17 27 no ..... .....
+ 27 35 no ..... .....
+ 35 ANCE no ..... .....
+ 35 H030 yes ..... ...1.
+ 27 10 yes .0... .....
+ 10 H006 no ..... .....
+ 10 13 yes ..... .1.1.
+ 13 H028 no ..... .....
+ 13 11 yes ..... ..1..
+ 11 H001 no ..... .....
+ 11 3 no ..... .....
+ 3 H020 yes ..... ....0
+ 3 9 no ..... .....
+ 9 H015 yes ..... ...0.
+ 9 5 yes .1... .....
+ 5 34 no ..... .....
+ 34 H018 no ..... .....
+ 34 21 yes ...1. .....
+ 21 31 no ..... .....
+ 31 H011 no ..... .....
+ 31 H003 yes ....1 .....
+ 21 15 no ..... .....
+ 15 33 yes ..1.. .....
+ 33 H014 yes 0.... .....
+ 33 H017 no ..... .....
+ 15 12 yes ..... ....0
+ 12 H010 no ..... .....
+ 12 18 no ..... .....
+ 18 H033 yes 0.... .....
+ 18 H027 yes ..1.. 0....
+ 5 20 yes 0.... .....
+ 20 H029 no ..... .....
+ 20 4 yes ..... ....0
+ 4 H034 no ..... .....
+ 4 32 yes ....1 .....
+ 32 H022 no ..... .....
+ 32 23 yes ..... 0....
+ 23 H013 no ..... .....
+ 23 H019 yes ..... ....1
+
+
+
+
+
+ +--H035
+ +----------------------------------------22
+ ! +--H007
+ +----------------------------------------------------------17
+ ! ! +--------------------------------------H025
+ ! ! !
+ ! +----25 +-----------------------------------H004
+ ! ! !
+ ! ! ! +-----H005
+ ! +--2 +-------------------------30
+ ! ! ! ! +--H031
+ ! ! ! +-28
+ ! +-19 +--H008
+ ! !
+ ! ! +-----------------------H024
+ ! ! !
+ ! +-------14 +--------------------H016
+ ! ! !
+ ! +--7 +-----------------H032
+--1 ! !
+ ! +-24 +--------------H021
+ ! ! !
+ ! +-26 +-----------H002
+ ! ! !
+ ! +--8 +--H012
+ ! ! +----29
+ ! ! ! +--H009
+ ! +-16
+ ! ! +--H023
+ ! +-----6
+ ! +--H026
+ !
+ ! +--ANCE
+ ! +----------------------------------------------------35
+ ! ! +--H030
+ +----------------------------------------------27
+ ! +--------------------------------------------------H006
+ ! !
+ +----10 +-----------------------------------------------H028
+ ! !
+ +-13 +--------------------------------------------H020
+ ! !
+ ! ! +-----------------------------------------H015
+ +--3 !
+ ! ! +--------------------------------------H001
+ ! ! !
+ +--9 ! +--------------------H018
+ ! ! !
+ ! ! ! +--H011
+ ! ! +-------------34 +-------------31
+ +-11 ! ! ! +--H003
+ ! ! ! !
+ ! ! +-21 +--H014
+ ! ! ! +-------33
+ ! ! ! ! +--H017
+ ! ! +----15
+ +--5 ! +--H033
+ ! ! +-18
+ ! +----12 +--H010
+ ! !
+ ! +-----H027
+ !
+ ! +-----------H029
+ +----------------------20
+ ! +--------H034
+ +--4
+ ! +-----H022
+ +-32
+ ! +--H013
+ +-23
+ +--H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 1 no ..... .....
+ 1 17 no ..... .....
+ 17 22 yes ...1. .....
+ 22 H035 yes ..... ....0
+ 22 H007 no ..... .....
+ 17 25 yes 0.... .....
+ 25 H025 no ..... .....
+ 25 2 yes ....1 .....
+ 2 H004 no ..... .....
+ 2 19 yes ..... 0....
+ 19 30 no ..... .....
+ 30 H005 yes ..... ....0
+ 30 28 no ..... .....
+ 28 H031 yes ..... ..1..
+ 28 H008 no ..... .....
+ 19 14 no ..... .....
+ 14 H024 yes ..... ...1.
+ 14 7 yes ...1. .....
+ 7 H016 no ..... .....
+ 7 24 no ..... .....
+ 24 H032 yes ..... .1...
+ 24 26 yes ..1.. .....
+ 26 H021 yes ..... ..1..
+ 26 8 yes 1.... .....
+ 8 H002 no ..... .....
+ 8 16 yes ....0 .....
+ 16 29 no ..... .....
+ 29 H012 no ..... .....
+ 29 H009 yes ..... ..1..
+ 16 6 yes ..... 1....
+ 6 H023 no ..... .....
+ 6 H026 yes 0.... .....
+ 1 27 no ..... .....
+ 27 35 no ..... .....
+ 35 ANCE no ..... .....
+ 35 H030 yes ..... ...1.
+ 27 10 yes .0... .....
+ 10 H006 no ..... .....
+ 10 13 yes ..... .1.1.
+ 13 H028 no ..... .....
+ 13 3 yes ..... ..1..
+ 3 H020 yes ..... ....0
+ 3 9 no ..... .....
+ 9 H015 yes ..... ...0.
+ 9 11 no ..... .....
+ 11 H001 no ..... .....
+ 11 5 yes .1... .....
+ 5 34 no ..... .....
+ 34 H018 no ..... .....
+ 34 21 yes ...1. .....
+ 21 31 no ..... .....
+ 31 H011 no ..... .....
+ 31 H003 yes ....1 .....
+ 21 15 maybe ..?.. .....
+ 15 33 maybe ..1.. .....
+ 33 H014 yes 0.... .....
+ 33 H017 no ..... .....
+ 15 12 yes ..... ....0
+ 12 18 maybe ..0.. .....
+ 18 H033 yes 0.... .....
+ 18 H010 no ..... .....
+ 12 H027 yes ..1.. 0....
+ 5 20 yes 0.... .....
+ 20 H029 no ..... .....
+ 20 4 yes ..... ....0
+ 4 H034 no ..... .....
+ 4 32 yes ....1 .....
+ 32 H022 no ..... .....
+ 32 23 yes ..... 0....
+ 23 H013 no ..... .....
+ 23 H019 yes ..... ....1
+
+
+
+
+
+ +--------------------------------------H025
+ !
+ +----------------------------------------------------------------25 +-----------------------------------H004
+ ! ! !
+ ! ! ! +-----H005
+ ! +--2 +-------------------------30
+ ! ! ! ! +--H031
+ ! ! ! +-28
+ ! +-19 +--H008
+ ! !
+ ! ! +-----------------------H024
+ ! ! !
+ ! +-------14 +--H032
+ ! ! +----------------24
+ ! ! ! +--H016
+ ! +--7
+ ! ! +--------------H021
+--1 ! !
+ ! +----26 +-----------H002
+ ! ! !
+ ! +--8 +--H012
+ ! ! +----29
+ ! ! ! +--H009
+ ! +-16
+ ! ! +--H023
+ ! +-----6
+ ! +--H026
+ !
+ ! +--H035
+ ! +----------------------------------------------------------22
+ ! ! +--H007
+ ! !
+ +----------------------------------------17 +--ANCE
+ ! +----------------------------------------------------35
+ ! ! +--H030
+ +----27
+ ! +--------------------------------------------------H006
+ ! !
+ +----10 +-----------------------------------------------H028
+ ! !
+ +-13 +--------------------------------------------H020
+ ! !
+ ! ! +-----------------------------------------H015
+ +--3 !
+ ! ! +--------------------------------------H001
+ ! ! !
+ +--9 ! +--------------------H018
+ ! ! !
+ ! ! ! +--H011
+ ! ! +-------------34 +-------------31
+ +-11 ! ! ! +--H003
+ ! ! ! !
+ ! ! +-21 +--H014
+ ! ! ! +-------33
+ ! ! ! ! +--H017
+ ! ! +----15
+ +--5 ! +-----H010
+ ! +----12
+ ! ! +--H033
+ ! +-18
+ ! +--H027
+ !
+ ! +-----------H029
+ +----------------------20
+ ! +--------H034
+ +--4
+ ! +-----H022
+ +-32
+ ! +--H013
+ +-23
+ +--H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 1 no ..... .....
+ 1 25 yes 0.... .....
+ 25 H025 no ..... .....
+ 25 2 yes ....1 .....
+ 2 H004 no ..... .....
+ 2 19 yes ..... 0....
+ 19 30 no ..... .....
+ 30 H005 yes ..... ....0
+ 30 28 no ..... .....
+ 28 H031 yes ..... ..1..
+ 28 H008 no ..... .....
+ 19 14 no ..... .....
+ 14 H024 yes ..... ...1.
+ 14 7 yes ...1. .....
+ 7 24 no ..... .....
+ 24 H032 yes ..... .1...
+ 24 H016 no ..... .....
+ 7 26 yes ..1.. .....
+ 26 H021 yes ..... ..1..
+ 26 8 yes 1.... .....
+ 8 H002 no ..... .....
+ 8 16 yes ....0 .....
+ 16 29 no ..... .....
+ 29 H012 no ..... .....
+ 29 H009 yes ..... ..1..
+ 16 6 yes ..... 1....
+ 6 H023 no ..... .....
+ 6 H026 yes 0.... .....
+ 1 17 no ..... .....
+ 17 22 yes ...1. .....
+ 22 H035 yes ..... ....0
+ 22 H007 no ..... .....
+ 17 27 no ..... .....
+ 27 35 no ..... .....
+ 35 ANCE no ..... .....
+ 35 H030 yes ..... ...1.
+ 27 10 yes .0... .....
+ 10 H006 no ..... .....
+ 10 13 yes ..... .1.1.
+ 13 H028 no ..... .....
+ 13 3 yes ..... ..1..
+ 3 H020 yes ..... ....0
+ 3 9 no ..... .....
+ 9 H015 yes ..... ...0.
+ 9 11 no ..... .....
+ 11 H001 no ..... .....
+ 11 5 yes .1... .....
+ 5 34 no ..... .....
+ 34 H018 no ..... .....
+ 34 21 yes ...1. .....
+ 21 31 no ..... .....
+ 31 H011 no ..... .....
+ 31 H003 yes ....1 .....
+ 21 15 no ..... .....
+ 15 33 yes ..1.. .....
+ 33 H014 yes 0.... .....
+ 33 H017 no ..... .....
+ 15 12 yes ..... ....0
+ 12 H010 no ..... .....
+ 12 18 no ..... .....
+ 18 H033 yes 0.... .....
+ 18 H027 yes ..1.. 0....
+ 5 20 yes 0.... .....
+ 20 H029 no ..... .....
+ 20 4 yes ..... ....0
+ 4 H034 no ..... .....
+ 4 32 yes ....1 .....
+ 32 H022 no ..... .....
+ 32 23 yes ..... 0....
+ 23 H013 no ..... .....
+ 23 H019 yes ..... ....1
+
+
+
+
+
+ +--H035
+ +----------------------------------------22
+ ! +--H007
+ +----------------------------------------------------------17
+ ! ! +--------------------------------------H025
+ ! ! !
+ ! +----25 +-----------------------------------H004
+ ! ! !
+ ! ! ! +-----H005
+ ! +--2 +-------------------------30
+ ! ! ! ! +--H031
+ ! ! ! +-28
+ ! +-19 +--H008
+ ! !
+ ! ! +-----------------------H024
+ ! ! !
+ ! +-------14 +--------------------H016
+ ! ! !
+ ! +--7 +-----------------H032
+--1 ! !
+ ! +-24 +--------------H021
+ ! ! !
+ ! +-26 +-----------H002
+ ! ! !
+ ! +--8 +--H012
+ ! ! +----29
+ ! ! ! +--H009
+ ! +-16
+ ! ! +--H023
+ ! +-----6
+ ! +--H026
+ !
+ ! +--ANCE
+ ! +----------------------------------------------------35
+ ! ! +--H030
+ +----------------------------------------------27
+ ! +--------------------------------------------------H006
+ ! !
+ +----10 +-----------------------------------------------H028
+ ! !
+ +-13 +--------------------------------------------H020
+ ! !
+ ! ! +-----------------------------------------H001
+ +--3 !
+ ! ! +--------------------------------------H015
+ ! ! !
+ +-11 ! +--------------------H018
+ ! ! !
+ ! ! ! +--H011
+ ! ! +-------------34 +-------------31
+ +--9 ! ! ! +--H003
+ ! ! ! !
+ ! ! +-21 +--H014
+ ! ! ! +-------33
+ ! ! ! ! +--H017
+ ! ! +----15
+ +--5 ! +--H033
+ ! ! +-18
+ ! +----12 +--H010
+ ! !
+ ! +-----H027
+ !
+ ! +-----------H029
+ +----------------------20
+ ! +--------H034
+ +--4
+ ! +-----H022
+ +-32
+ ! +--H013
+ +-23
+ +--H019
+
+
+requires a total of 38.000
+
+From To Any Steps? State at upper node
+ ( . means same as in the node below it on tree)
+
+root 1 no ..... .....
+ 1 17 no ..... .....
+ 17 22 yes ...1. .....
+ 22 H035 yes ..... ....0
+ 22 H007 no ..... .....
+ 17 25 yes 0.... .....
+ 25 H025 no ..... .....
+ 25 2 yes ....1 .....
+ 2 H004 no ..... .....
+ 2 19 yes ..... 0....
+ 19 30 no ..... .....
+ 30 H005 yes ..... ....0
+ 30 28 no ..... .....
+ 28 H031 yes ..... ..1..
+ 28 H008 no ..... .....
+ 19 14 no ..... .....
+ 14 H024 yes ..... ...1.
+ 14 7 yes ...1. .....
+ 7 H016 no ..... .....
+ 7 24 no ..... .....
+ 24 H032 yes ..... .1...
+ 24 26 yes ..1.. .....
+ 26 H021 yes ..... ..1..
+ 26 8 yes 1.... .....
+ 8 H002 no ..... .....
+ 8 16 yes ....0 .....
+ 16 29 no ..... .....
+ 29 H012 no ..... .....
+ 29 H009 yes ..... ..1..
+ 16 6 yes ..... 1....
+ 6 H023 no ..... .....
+ 6 H026 yes 0.... .....
+ 1 27 no ..... .....
+ 27 35 no ..... .....
+ 35 ANCE no ..... .....
+ 35 H030 yes ..... ...1.
+ 27 10 yes .0... .....
+ 10 H006 no ..... .....
+ 10 13 yes ..... .1.1.
+ 13 H028 no ..... .....
+ 13 3 yes ..... ..1..
+ 3 H020 yes ..... ....0
+ 3 11 no ..... .....
+ 11 H001 no ..... .....
+ 11 9 no ..... .....
+ 9 H015 yes ..... ...0.
+ 9 5 yes .1... .....
+ 5 34 no ..... .....
+ 34 H018 no ..... .....
+ 34 21 yes ...1. .....
+ 21 31 no ..... .....
+ 31 H011 no ..... .....
+ 31 H003 yes ....1 .....
+ 21 15 maybe ..?.. .....
+ 15 33 maybe ..1.. .....
+ 33 H014 yes 0.... .....
+ 33 H017 no ..... .....
+ 15 12 yes ..... ....0
+ 12 18 maybe ..0.. .....
+ 18 H033 yes 0.... .....
+ 18 H010 no ..... .....
+ 12 H027 yes ..1.. 0....
+ 5 20 yes 0.... .....
+ 20 H029 no ..... .....
+ 20 4 yes ..... ....0
+ 4 H034 no ..... .....
+ 4 32 yes ....1 .....
+ 32 H022 no ..... .....
+ 32 23 yes ..... 0....
+ 23 H013 no ..... .....
+ 23 H019 yes ..... ....1
+
+
diff --git a/trunk/test/phylip/ancestor_present/association/outtree b/trunk/test/phylip/ancestor_present/association/outtree
new file mode 100644
index 0000000000000000000000000000000000000000..14eb3a5ff98bc6a711df28686f797a1919a82271
--- /dev/null
+++ b/trunk/test/phylip/ancestor_present/association/outtree
@@ -0,0 +1,400 @@
+(((H035,H007),(H025,(H004,((H005,(H031,H008)),(H024,((H032,H016),(H021,
+(H002,((H012,H009),(H023,H026)))))))))),((ANCE,H030),(H006,(H028,((H015,
+(H001,H020)),((H018,((H011,H003),((H014,H017),(H010,(H033,H027))))),
+(H029,(H034,(H022,(H013,H019))))))))))[0.0100];
+(((H035,H007),(H025,(H004,((H005,(H031,H008)),(H024,((H032,H016),(H021,
+(H002,((H012,H009),(H023,H026)))))))))),((ANCE,H030),(H006,(H028,(((H001,
+H015),H020),((H018,((H011,H003),((H014,H017),(H010,(H033,H027))))),
+(H029,(H034,(H022,(H013,H019))))))))))[0.0100];
+((H025,(H004,((H005,(H031,H008)),(H024,((H032,H016),(H021,(H002,((H012,
+H009),(H023,H026))))))))),((H035,H007),((ANCE,H030),(H006,(H028,(H001,
+((H015,H020),((H018,((H011,H003),((H014,H017),(H010,(H033,H027))))),
+(H029,(H034,(H022,(H013,H019))))))))))))[0.0100];
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+(H021,(H002,(H009,(H012,(H023,H026))))))))))))),(ANCE,(H006,(H028,
+(H015,(H001,(H020,((H018,(H003,(H011,((H014,H017),(H010,H027))))),
+(H029,(H033,(H034,(H022,(H013,H019))))))))))))))[0.0100];
+(H030,(((H035,H007),(H025,(H004,(H008,(H031,(H024,(H005,(H032,(H016,
+(H021,(H002,(H009,(H012,(H023,H026)))))))))))))),(ANCE,(H006,(H028,
+(H015,(H001,(H020,((H018,(H003,(H011,((H014,H017),(H010,H027))))),
+(H029,(H033,(H034,(H022,(H013,H019))))))))))))))[0.0100];
+(H030,(((H035,H007),(H025,(H004,(H031,(H008,(H024,(H005,(H032,(H016,
+(H021,(H002,((H012,H009),(H023,H026))))))))))))),(ANCE,(H006,(H028,
+(H015,(H001,(H020,((H018,(H003,(H011,((H014,H017),(H010,H027))))),
+(H029,(H033,(H034,(H022,(H013,H019))))))))))))))[0.0100];
+(H030,(((H035,H007),(H025,(H004,(H031,(H008,(H024,(H005,(H032,(H016,
+(H021,(H002,(H009,(H012,(H023,H026)))))))))))))),(ANCE,(H006,(H028,
+(H015,(H001,(H020,((H018,(H003,(H011,((H014,H017),(H010,H027))))),
+(H029,(H033,(H034,(H022,(H013,H019))))))))))))))[0.0100];
+(H030,(((H035,H007),(H025,(H004,((H005,H031),(H008,(H024,(H032,(H016,
+(H021,(H002,(H012,(H009,(H023,H026))))))))))))),(ANCE,(H006,(H028,
+(H015,(H001,(H020,((H018,(H003,(H011,((H014,H017),(H010,H027))))),
+(H029,(H033,(H034,(H022,(H013,H019))))))))))))))[0.0100];
+(H030,(((H035,H007),(H025,(H004,(H031,(H008,(H024,(H005,(H032,(H016,
+(H021,(H002,(H012,(H009,(H023,H026)))))))))))))),(ANCE,(H006,(H028,
+(H015,(H001,(H020,((H018,(H003,(H011,((H014,H017),(H010,H027))))),
+(H029,(H033,(H034,(H022,(H013,H019))))))))))))))[0.0100];
+(H030,(((H035,H007),(H025,(H004,(H005,(H031,(H008,(H024,(H032,(H016,
+(H021,(H002,(H012,(H009,(H023,H026)))))))))))))),(ANCE,(H006,(H028,
+(H015,(H001,(H020,((H018,(H003,(H011,((H014,H017),(H010,H027))))),
+(H029,(H033,(H034,(H022,(H013,H019))))))))))))))[0.0100];
+(H030,(((H035,H007),(H025,(H004,(H008,(H024,((H005,H031),(H032,(H016,
+(H021,(H002,(H009,(H012,(H023,H026))))))))))))),(ANCE,(H006,(H028,
+(H015,(H001,(H020,((H018,(H003,(H011,((H014,H017),(H010,H027))))),
+(H029,(H033,(H034,(H022,(H013,H019))))))))))))))[0.0100];
+(H030,(((H035,H007),(H025,(H004,(H008,(H024,(H031,(H005,(H032,(H016,
+(H021,(H002,(H009,(H012,(H023,H026)))))))))))))),(ANCE,(H006,(H028,
+(H015,(H001,(H020,((H018,(H003,(H011,((H014,H017),(H010,H027))))),
+(H029,(H033,(H034,(H022,(H013,H019))))))))))))))[0.0100];
+(H030,(((H035,H007),(H025,(H004,(H008,(H024,(H005,(H031,(H032,(H016,
+(H021,(H002,(H009,(H012,(H023,H026)))))))))))))),(ANCE,(H006,(H028,
+(H015,(H001,(H020,((H018,(H003,(H011,((H014,H017),(H010,H027))))),
+(H029,(H033,(H034,(H022,(H013,H019))))))))))))))[0.0100];
+(((H035,H007),(H025,(H004,(H008,(H024,((H005,H031),(H032,(H016,(H021,
+(H002,(H009,(H012,(H023,H026))))))))))))),((ANCE,H030),(H006,(H028,
+(H015,(H001,(H020,((H018,(H003,(H011,((H014,H017),(H010,H027))))),
+(H029,(H033,(H034,(H022,(H013,H019)))))))))))))[0.0100];
+(((H035,H007),(H025,(H004,(H008,(H024,((H005,H031),(H032,(H016,(H021,
+(H002,(H009,(H012,(H023,H026))))))))))))),(H030,(ANCE,(H006,(H028,
+(H015,(H001,(H020,((H018,(H003,(H011,((H014,H017),(H010,H027))))),
+(H029,(H033,(H034,(H022,(H013,H019))))))))))))))[0.0100];
+(((H035,H007),(H025,(H004,(H008,(H024,((H005,H031),(H032,(H016,(H021,
+(H002,(H009,(H012,(H023,H026))))))))))))),(ANCE,(H030,(H006,(H028,
+(H015,(H001,(H020,((H018,(H003,(H011,((H014,H017),(H010,H027))))),
+(H029,(H033,(H034,(H022,(H013,H019))))))))))))))[0.0100];
+(((H035,H007),(H025,(H004,(H008,(H024,((H005,H031),(H032,(H016,(H021,
+(H002,(H009,(H012,(H023,H026))))))))))))),(ANCE,(H006,(H030,(H028,
+(H015,(H001,(H020,((H018,(H003,(H011,((H014,H017),(H010,H027))))),
+(H029,(H033,(H034,(H022,(H013,H019))))))))))))))[0.0100];
+((H030,((H035,H007),(H025,(H004,(H008,(H024,((H005,H031),(H032,(H016,
+(H021,(H002,(H009,(H012,(H023,H026)))))))))))))),(ANCE,(H006,(H028,
+(H015,(H001,(H020,((H018,(H003,(H011,((H014,H017),(H010,H027))))),
+(H029,(H033,(H034,(H022,(H013,H019)))))))))))))[0.0100];
+(((H030,(H035,H007)),(H025,(H004,(H008,(H024,((H005,H031),(H032,(H016,
+(H021,(H002,(H009,(H012,(H023,H026))))))))))))),(ANCE,(H006,(H028,
+(H015,(H001,(H020,((H018,(H003,(H011,((H014,H017),(H010,H027))))),
+(H029,(H033,(H034,(H022,(H013,H019)))))))))))))[0.0100];
+(((H035,H007),(H030,(H025,(H004,(H008,(H024,((H005,H031),(H032,(H016,
+(H021,(H002,(H009,(H012,(H023,H026)))))))))))))),(ANCE,(H006,(H028,
+(H015,(H001,(H020,((H018,(H003,(H011,((H014,H017),(H010,H027))))),
+(H029,(H033,(H034,(H022,(H013,H019)))))))))))))[0.0100];
+(((H035,H007),(H025,(H004,(H008,(H024,((H005,H031),(H016,(H032,(H021,
+(H002,(H009,(H012,(H023,H026))))))))))))),((ANCE,H030),(H006,(H028,
+(H015,(H001,(H020,((H018,((H011,H003),((H014,H017),(H010,H027)))),
+(H029,(H033,(H034,(H022,(H013,H019)))))))))))))[0.0100];
+(((H035,H007),(H025,(H004,(H008,(H024,((H005,H031),(H016,(H032,(H021,
+(H002,(H009,(H012,(H023,H026))))))))))))),((ANCE,H030),(H006,(H028,
+(H015,(H001,(H020,((H018,(H003,(H011,((H014,H017),(H010,H027))))),
+(H029,(H033,(H034,(H022,(H013,H019)))))))))))))[0.0100];
+(((H035,H007),(H025,(H004,(H008,(H024,((H005,H031),(H016,(H032,(H021,
+(H002,(H009,(H012,(H023,H026))))))))))))),((ANCE,H030),(H006,(H028,
+(H015,(H001,(H020,((H018,(H011,(H003,((H014,H017),(H010,H027))))),
+(H029,(H033,(H034,(H022,(H013,H019)))))))))))))[0.0100];
+(((H035,H007),(H025,(H004,(H024,((H005,(H031,H008)),(H016,(H032,(H021,
+(H002,(H009,(H012,(H023,H026)))))))))))),((ANCE,H030),(H006,(H028,
+(H015,(H001,(H020,((H018,((H011,H003),((H014,H017),(H033,(H010,H027))))),
+(H029,(H034,(H022,(H013,H019))))))))))))[0.0100];
+(((H035,H007),(H025,(H004,((H005,(H031,H008)),(H024,(H016,(H032,(H021,
+(H002,((H012,H009),(H023,H026))))))))))),((ANCE,H030),(H006,(H015,
+(H028,(H001,(H020,((H018,((H011,H003),((H014,H017),(H010,(H033,H027))))),
+(H029,(H034,(H022,(H013,H019))))))))))))[0.0100];
+(((H035,H007),(H025,(H004,((H005,(H031,H008)),(H024,(H016,(H032,(H021,
+(H002,((H012,H009),(H023,H026))))))))))),((ANCE,H030),(H006,(H015,
+(H028,(H001,(H020,((H018,((H011,H003),((H014,H017),((H033,H010),H027)))),
+(H029,(H034,(H022,(H013,H019))))))))))))[0.0100];
+(((H035,H007),(H025,(H004,((H005,(H031,H008)),(H024,(H016,(H032,(H021,
+(H002,((H012,H009),(H023,H026))))))))))),((ANCE,H030),(H006,(H015,
+(H028,(H020,(H001,((H018,((H011,H003),((H014,H017),((H033,H010),H027)))),
+(H029,(H034,(H022,(H013,H019))))))))))))[0.0100];
+(((H035,H007),(H025,(H004,((H005,(H031,H008)),(H024,(H016,(H032,(H021,
+(H002,((H012,H009),(H023,H026))))))))))),((ANCE,H030),(H006,(H028,
+(H015,(H020,(H001,((H018,((H011,H003),((H014,H017),((H033,H010),H027)))),
+(H029,(H034,(H022,(H013,H019))))))))))))[0.0100];
+((H025,(H004,((H005,(H031,H008)),(H024,((H032,H016),(H021,(H002,((H012,
+H009),(H023,H026))))))))),((H035,H007),((ANCE,H030),(H006,(H028,(H015,
+(H020,(H001,((H018,((H011,H003),((H014,H017),(H010,(H033,H027))))),
+(H029,(H034,(H022,(H013,H019)))))))))))))[0.0100];
+((H025,(H004,((H005,(H031,H008)),(H024,((H032,H016),(H021,(H002,((H012,
+H009),(H023,H026))))))))),((H035,H007),((ANCE,H030),(H006,(H028,(H001,
+(H015,(H020,((H018,((H011,H003),((H014,H017),(H010,(H033,H027))))),
+(H029,(H034,(H022,(H013,H019)))))))))))))[0.0100];
+(((H035,H007),(H025,(H004,((H005,(H031,H008)),(H024,((H032,H016),(H021,
+(H002,((H012,H009),(H023,H026)))))))))),((ANCE,H030),(H006,(H028,(H020,
+((H001,H015),((H018,((H011,H003),((H033,H010),(H017,(H014,H027))))),
+(H029,(H034,(H022,(H013,H019)))))))))))[0.0100];
+(((H035,H007),(H025,(H004,((H005,(H031,H008)),(H024,((H032,H016),(H021,
+(H002,((H012,H009),(H023,H026)))))))))),((ANCE,H030),(H006,(H028,(H020,
+((H001,H015),((H018,((H011,H003),((H033,H010),((H014,H017),H027)))),
+(H029,(H034,(H022,(H013,H019)))))))))))[0.0100];
+(((H035,H007),(H025,(H004,((H005,(H031,H008)),(H024,((H032,H016),(H021,
+(H002,((H012,H009),(H023,H026)))))))))),((ANCE,H030),(H006,(H028,(H020,
+((H001,H015),((H018,((H011,H003),((H033,H010),(H014,(H017,H027))))),
+(H029,(H034,(H022,(H013,H019)))))))))))[0.0100];
+(((H035,H007),(H025,(H004,((H005,(H031,H008)),(H024,((H032,H016),(H021,
+(H002,((H012,H009),(H023,H026)))))))))),((ANCE,H030),(H006,(H028,(H020,
+((H001,H015),((H018,((H011,H003),((H014,H017),(H010,(H033,H027))))),
+(H029,(H034,(H022,(H013,H019)))))))))))[0.0100];
+(((H035,H007),(H025,(H004,((H005,(H031,H008)),(H024,((H032,H016),(H021,
+(H002,((H012,H009),(H023,H026)))))))))),((ANCE,H030),(H006,(H028,(H020,
+((H001,H015),((H018,((H011,H003),((H014,H017),((H033,H010),H027)))),
+(H029,(H034,(H022,(H013,H019)))))))))))[0.0100];
+(((H035,H007),(H025,(H004,((H005,(H031,H008)),(H024,(H032,(H016,(H021,
+(H002,((H012,H009),(H023,H026))))))))))),((ANCE,H030),(H006,(H028,
+(H020,((H001,H015),((H018,((H011,H003),((H014,H017),((H033,H010),H027)))),
+(H029,(H034,(H022,(H013,H019)))))))))))[0.0100];
+(((H035,H007),(H025,(H004,((H005,(H031,H008)),(H024,(H016,(H032,(H021,
+(H002,((H012,H009),(H023,H026))))))))))),((ANCE,H030),(H006,(H028,
+(H020,((H001,H015),((H018,((H011,H003),((H014,H017),((H033,H010),H027)))),
+(H029,(H034,(H022,(H013,H019)))))))))))[0.0100];
+(((H035,H007),(H025,(H004,((H005,(H031,H008)),(H024,((H032,H016),(H021,
+(H002,((H012,H009),(H023,H026)))))))))),((ANCE,H030),(H006,(H028,(H020,
+((H001,H015),((H018,((H011,H003),((H014,H017),(H033,(H010,H027))))),
+(H029,(H034,(H022,(H013,H019)))))))))))[0.0100];
+((H025,(H004,((H005,(H031,H008)),(H024,((H032,H016),(H021,(H002,((H012,
+H009),(H023,H026))))))))),((H035,H007),((ANCE,H030),(H006,(H028,(H001,
+(H020,(H015,((H018,((H011,H003),((H014,H017),(H010,(H033,H027))))),
+(H029,(H034,(H022,(H013,H019)))))))))))))[0.0100];
+(((H035,H007),(H025,(H004,((H005,(H031,H008)),(H024,(H016,(H032,(H021,
+(H002,((H012,H009),(H023,H026))))))))))),((ANCE,H030),(H006,(H028,
+(H020,(H015,(H001,((H018,((H011,H003),((H014,H017),((H033,H010),H027)))),
+(H029,(H034,(H022,(H013,H019))))))))))))[0.0100];
+((H025,(H004,((H005,(H031,H008)),(H024,((H032,H016),(H021,(H002,((H012,
+H009),(H023,H026))))))))),((H035,H007),((ANCE,H030),(H006,(H028,(H020,
+(H015,(H001,((H018,((H011,H003),((H014,H017),(H010,(H033,H027))))),
+(H029,(H034,(H022,(H013,H019)))))))))))))[0.0100];
+(((H035,H007),(H025,(H004,((H005,(H031,H008)),(H024,(H016,(H032,(H021,
+(H002,((H012,H009),(H023,H026))))))))))),((ANCE,H030),(H006,(H028,
+(H020,(H001,(H015,((H018,((H011,H003),((H014,H017),((H033,H010),H027)))),
+(H029,(H034,(H022,(H013,H019))))))))))))[0.0100];
diff --git a/trunk/test/phylip/ancestor_present/association/run_altree b/trunk/test/phylip/ancestor_present/association/run_altree
new file mode 100755
index 0000000000000000000000000000000000000000..51a135cac157bfd7dd4adca61ff8749ea3c89962
--- /dev/null
+++ b/trunk/test/phylip/ancestor_present/association/run_altree
@@ -0,0 +1,11 @@
+#!/bin/sh -x
+
+# To run phylip, option A and 5 are used
+phylip mix
+
+# To perform the association test. The ancestral sequence must be
+# provided with the --anc-seq option beacuse it is not in the phylip
+# output file
+../../../../altree -i outfile -j nb_cas_controls.txt \
+ -a -t SNP -p phylip -r 1 \
+ --tree-to-analyse 1 --anc-seq 1100010001 -o 1_trio_phy.asso
diff --git a/trunk/test/phylip/ancestor_present/association/trio.phy b/trunk/test/phylip/ancestor_present/association/trio.phy
new file mode 100644
index 0000000000000000000000000000000000000000..c7531deaf4bde3749092b223250d2a490e42e602
--- /dev/null
+++ b/trunk/test/phylip/ancestor_present/association/trio.phy
@@ -0,0 +1,37 @@
+ 36 10
+H019 0100101111
+H026 0111010001
+H004 0100110001
+H020 1000011110
+H034 0100011110
+H027 1111001110
+H023 1111010001
+H016 0101100001
+H002 1111100001
+H015 1000011101
+H006 1000010001
+H001 1000011111
+H010 1101011110
+H028 1000011011
+H024 0100100011
+H017 1111011111
+H009 1111000101
+H007 1101010001
+H033 0101011110
+H008 0100100001
+H029 0100011111
+H003 1101111111
+H035 1101010000
+H013 0100101110
+H032 0101101001
+H025 0100010001
+H021 0111100101
+H030 1100010011
+H031 0100100101
+H012 1111000001
+H005 0100100000
+H011 1101011111
+H022 0100111110
+H014 0111011111
+H018 1100011111
+ANCE 1100010001
diff --git a/trunk/test/phylip/outgroup_absent/association/1_trio_phy.asso b/trunk/test/phylip/outgroup_absent/association/1_trio_phy.asso
new file mode 100644
index 0000000000000000000000000000000000000000..fda8270ce0f406d92b6b637c18c43b9a68332c37
--- /dev/null
+++ b/trunk/test/phylip/outgroup_absent/association/1_trio_phy.asso
@@ -0,0 +1,134 @@
+
+ /----* H030 case/control:1/1
+ | Site: 9 Sens: 0-->1
+ |----* H006 case/control:23/19
+ | Site: 2 Sens: 1-->0
+-----* 35+(10+(27)) case/control:200/200
+ |
+ | [0] ddl=2 chi2=0.43 p_value_chi2=0.801
+ | [1] ddl=4 chi2=3.49 p_value_chi2=0.539
+ | [2] ddl=6 chi2=7.31 p_value_chi2=0.24
+ | [3] ddl=8 chi2=9.87 p_value_chi2=0.241
+ | [4] ddl=9 chi2=12.35 p_value_chi2=0.17
+ | [5] ddl=10 chi2=18.26 p_value_chi2=0.037
+ | [6] ddl=12 chi2=19.27 p_value_chi2=0.04
+ | [7] ddl=16 chi2=27.25 p_value_chi2=0.015
+ | [8] ddl=18 chi2=31.34 p_value_chi2=0.009
+ | [9] ddl=19 chi2=31.42 p_value_chi2=0.016
+ | [10] ddl=20 chi2=39.94 p_value_chi2=0.002
+ | [11] ddl=21 chi2=50.63 p_value_chi2=0
+ | [12] ddl=23 chi2=52.79 p_value_chi2=0
+ | [13] ddl=25 chi2=53.21 p_value_chi2=0
+ | [14] ddl=27 chi2=54.70 p_value_chi2=0
+ | [15] ddl=32 chi2=66.05 p_value_chi2=0
+ | [16] ddl=34 chi2=68.34 p_value_chi2=0
+ | /----* H035 case/control:1/0
+ | | Site: 10 Sens: 1-->0
+ | |----* H007 case/control:25/36
+ \----* 17+(22) case/control:176/180
+ | Site: 4 Sens: 0-->1
+ | /----* H023 case/control:1/5
+ | |----* H026 case/control:1/0
+ | | Site: 1 Sens: 1-->0
+ \----* 1+(6) case/control:150/144
+ | Site: 3 Sens: 0-->1
+ | /----* H012 case/control:1/2
+ | |----* H009 case/control:5/10
+ | | Site: 8 Sens: 0-->1
+ \----* 16+(29) case/control:148/139
+ | Site: 6 Sens: 1-->0
+ | /----* H002 case/control:9/3
+ \----* 8 case/control:142/127
+ | Site: 5 Sens: 0-->1
+ | /----* H021 case/control:11/2
+ | | Site: 8 Sens: 0-->1
+ \----* 26 case/control:133/124
+ | Site: 1 Sens: 1-->0
+ | /----* H032 case/control:0/1
+ | | Site: 7 Sens: 0-->1
+ | |----* H016 case/control:2/2
+ \----* 7+(24) case/control:122/122
+ | Site: 3 Sens: 1-->0
+ | /----* H025 case/control:2/3
+ | | Site: 5 Sens: 1-->0
+ | /----* 25 case/control:13/5
+ | | | Site: 6 Sens: 0-->1
+ | | \----* H004 case/control:11/2
+ | |----* H008 case/control:28/19
+ | |----* H005 case/control:2/2
+ | | Site: 10 Sens: 1-->0
+ \----* 2+(19+(28+(30))) case/control:120/119
+ | Site: 4 Sens: 1-->0
+ |----* H031 case/control:1/0
+ | Site: 8 Sens: 0-->1
+ | /----* H024 case/control:1/0
+ \----* 14 case/control:76/93
+ | Site: 9 Sens: 0-->1
+ | /----* H013 case/control:15/5
+ | /----* 23 case/control:72/90
+ | | | Site: 10 Sens: 1-->0
+ | | | /----* H022 case/control:9/1
+ | | \----* 32 case/control:57/85
+ | | | Site: 6 Sens: 0-->1
+ | | | /----* H033 case/control:0/1
+ | | | /----* 18 case/control:1/4
+ | | | | | Site: 4 Sens: 0-->1
+ | | | | \----* H010 case/control:1/3
+ | | | | Site: 1 Sens: 0-->1
+ | | | |----* H034 case/control:1/0
+ | | \----* 4+(12) case/control:48/84
+ | | | Site: 5 Sens: 1-->0
+ | | | /----* H029 case/control:1/3
+ | | \----* 20 case/control:46/80
+ | | | Site: 10 Sens: 0-->1
+ | | | /----* H018 case/control:2/2
+ | | | | /----* H011 case/control:3/8
+ | | | | |----* H003 case/control:2/0
+ | | | | | Site: 5 Sens: 0-->1
+ | | | |----* 21+(31) case/control:8/21
+ | | | | | Site: 4 Sens: 0-->1
+ | | | | | /----* H014 case/control:2/3
+ | | | | | | Site: 1 Sens: 1-->0
+ | | | | | |----* H017 case/control:0/8
+ | | | | \----* 15+(33) case/control:3/13
+ | | | | | Site: 3 Sens: 0-->1
+ | | | | \----* H027 case/control:1/2
+ | | | | Site: 6 Sens: 1-->0
+ | | | | Site: 10 Sens: 1-->0
+ | | \----* 5+(34) case/control:45/77
+ | | | Site: 1 Sens: 0-->1
+ | | | /----* H001 case/control:24/39
+ | | | |----* H015 case/control:2/6
+ | | | | Site: 9 Sens: 1-->0
+ | | \----* 9+(11)+(13) case/control:35/54
+ | | | Site: 2 Sens: 1-->0
+ | | |----* H028 case/control:4/0
+ | | | Site: 8 Sens: 1-->0
+ | | \----* H020 case/control:5/9
+ | | Site: 10 Sens: 1-->0
+ \----* 3 case/control:75/93
+ | Site: 8 Sens: 0-->1
+ | Site: 7 Sens: 0-->