- 11 Dec, 2015 2 commits
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Rayan authored
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- 10 Dec, 2015 1 commit
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Rayan Chikhi authored
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- 09 Dec, 2015 3 commits
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Rayan Chikhi authored
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Rayan Chikhi authored
a more robust estimation of minimizers repartition. before, short reads could lead to incorrect estimation as we only read a fixed number for reads; but now, we require to read a certain number of superkmers. will see if that fixes the OAHash max rehashes bug.
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Rayan Chikhi authored
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- 06 Dec, 2015 2 commits
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Rayan Chikhi authored
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Rayan Chikhi authored
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- 05 Dec, 2015 1 commit
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Rayan Chikhi authored
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- 25 Nov, 2015 1 commit
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Rayan Chikhi authored
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- 23 Nov, 2015 1 commit
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Charles Deltel authored
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- 19 Nov, 2015 1 commit
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Rayan Chikhi authored
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- 18 Nov, 2015 2 commits
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Rayan Chikhi authored
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Rayan Chikhi authored
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- 16 Nov, 2015 1 commit
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Rayan Chikhi authored
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- 14 Nov, 2015 2 commits
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Rayan Chikhi authored
still takes quite a bit of construction memory though; also, slightly longer query times. could be solved by switching to compute_mphf_seq but i wanted to try with superspeedy construction.
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Rayan Chikhi authored
related to why we can't just ignore non-branching nodes forever during simplifications (they may become dead-ends after tip removal); this removes the possibility of a faster nodes iteration (that wouldn't compute a mphf index for each node)
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- 13 Nov, 2015 1 commit
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Rayan Chikhi authored
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- 12 Nov, 2015 5 commits
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Rayan Chikhi authored
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Rayan Chikhi authored
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Rayan Chikhi authored
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Rayan Chikhi authored
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Rayan Chikhi authored
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- 11 Nov, 2015 1 commit
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Rayan Chikhi authored
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- 10 Nov, 2015 16 commits
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Rayan Chikhi authored
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Rayan Chikhi authored
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Rayan Chikhi authored
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Rayan Chikhi authored
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Rayan Chikhi authored
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Rayan Chikhi authored
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Rayan Chikhi authored
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Rayan Chikhi authored
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Rayan Chikhi authored
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Rayan Chikhi authored
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Rayan Chikhi authored
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Rayan Chikhi authored
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Rayan Chikhi authored
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Rayan Chikhi authored
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Rayan Chikhi authored
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Rayan Chikhi authored
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