Commits · 4ddbf8ca5ee5994b3ee31e53aa3b6b6fe733c8fe · GATB / gatb-core

30 Apr, 2015 5 commits
- cosmit · 4ddbf8ca
  edrezen authored Apr 30, 2015
  
  4ddbf8ca
- Correct bad path · f573de31
  edrezen authored Apr 30, 2015
  
  f573de31
- First version · 17d5198a
  edrezen authored Apr 30, 2015
  
  17d5198a
- Adjustement for small kmer sizes (for instance in unit tests) · 8d1f1bbc
  edrezen authored Apr 30, 2015
  
  8d1f1bbc
- Correct bad minimize size usage by Debloom classes · 487a1079
  edrezen authored Apr 30, 2015
  
  487a1079
29 Apr, 2015 2 commits
- iterator on Hash16 · 9e5777cd
  Guillaume Rizk authored Apr 29, 2015
  
  9e5777cd
- more explicit error message in params · 7f98049a
  Rayan Chikhi authored Apr 29, 2015
  
  7f98049a
27 Apr, 2015 14 commits
- sha1 management · 78aec4fd
  Erwan Drezen authored Apr 27, 2015
  
  78aec4fd
- first version · 2477a8db
  edrezen authored Apr 27, 2015
  
  2477a8db
- sha1 · fb7fb20d
  Erwan Drezen authored Apr 27, 2015
  
  fb7fb20d
- sha1 · 6114e6b1
  Erwan Drezen authored Apr 27, 2015
  
  6114e6b1
- SHA1 management · 358262bf
  Erwan Drezen authored Apr 27, 2015
  
  358262bf
- SHA1 management · bbbb9370
  edrezen authored Apr 27, 2015
  
  bbbb9370
- Reintroduce a prototype for 'iterate' · 22b46117
  edrezen authored Apr 27, 2015
  
  22b46117
- cosmit · 52420e63
  edrezen authored Apr 27, 2015
  
  52420e63
- Merge branch 'master' of ssh://edrezen@scm.gforge.inria.fr//gitroot/gatb-core/gatb-core.git · 1eb05a7a
  edrezen authored Apr 27, 2015
  
  1eb05a7a
- Retrieve git sha1 and use it in config.h file; dump the sha1 as output · 79a76121
  edrezen authored Apr 27, 2015
```
of dbgh5
```
  79a76121
- minor modif to error message · c1636d9e
  Rayan authored Apr 27, 2015
  
  c1636d9e
- update -W options (remove some because of continuous integration · 20eb7fe1
  edrezen authored Apr 27, 2015
```
servers)
```
  20eb7fe1
- Correct bad "finalize" call on first iterator in case of multi banks · de507e95
  edrezen authored Apr 27, 2015
  
  de507e95
- Use -Wall (minus a few warning options) and correct many (minor) · 2606292d
  edrezen authored Apr 27, 2015
```
warnings
```
  2606292d
24 Apr, 2015 4 commits
- cosmit · af21e957
  edrezen authored Apr 24, 2015
  
  af21e957
- Correct bad computation of max seq length in BankFasta => made some · df3128e7
  edrezen authored Apr 24, 2015
```
problems with new way to estimate kmers number in
SortingCountAlgorithm::configure
```
  df3128e7
- correct bad constructor call for old compiler version · e9d69b48
  Erwan Drezen authored Apr 24, 2015
  
  e9d69b48
- Add the choice to delete functors at the end of a dispatcher iterate: · d5633bcd
  edrezen authored Apr 24, 2015
```
synchronously or asynchronously
```
  d5633bcd
23 Apr, 2015 10 commits
- When iterating multi banks, the 'finalize' call was not done (which · 098b4d33
  edrezen authored Apr 23, 2015
```
releases the file handle)
```
  098b4d33
- Add a hack to avoid an invalid write (seen by valgring) when a seuqnece · 15776553
  edrezen authored Apr 23, 2015
```
has a header holding a space at index being a power of 2.
```
  15776553
- Add a 'finalize' method in IBank => used by BankFasta to close the file · 030a298c
  edrezen authored Apr 23, 2015
```
handle (see bank10 snippet)
```
  030a298c
- cosmit · ea196003
  edrezen authored Apr 23, 2015
  
  ea196003
- Improve "bank split" snippet · 824adac0
  edrezen authored Apr 23, 2015
  
  824adac0
- Better management of HDF5 errors · 013eebc6
  edrezen authored Apr 23, 2015
  
  013eebc6
- cosmit · 01d35e00
  edrezen authored Apr 23, 2015
  
  01d35e00
- Dump in GBytes · 0223afab
  edrezen authored Apr 23, 2015
  
  0223afab
- Display (part of) bank name in first progress bar · bc6915e6
  edrezen authored Apr 23, 2015
  
  bc6915e6
- Avoid two small memory leaks during unit tests · 8c4dd1fe
  edrezen authored Apr 23, 2015
  
  8c4dd1fe
22 Apr, 2015 5 commits
- cosmit · 7df528c0
  edrezen authored Apr 22, 2015
  
  7df528c0
- first version · 41f1c287
  edrezen authored Apr 22, 2015
  
  41f1c287
- Use another constructor for ofstream (otherwise may not compile with old · 627c9d7b
  edrezen authored Apr 22, 2015
```
compilers versions)
```
  627c9d7b
- Use another constructor for ofstream (otherwise may not compile with old · 1b7bc1fc
  edrezen authored Apr 22, 2015
```
compilers versions)
```
  1b7bc1fc
- cosmit · 48a426bb
  edrezen authored Apr 22, 2015
  
  48a426bb